Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACE	0	genome.wustl.edu	37	17	61562387	61562387	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	61562387	61562387	C	A	SNP	ACE	ENST00000490216	human	ensembl	69_37n	+1	known	silent	c.159	p.T53	0.001	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	57	0	0.00	28	5	15.15	-	-	-
ADCY3	0	genome.wustl.edu	37	2	25046212	25046212	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	25046212	25046212	G	T	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	missense	c.2749	p.Q917K	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	71	0	0.00	35	4	10.26	-	-	-
AGMO	0	genome.wustl.edu	37	7	15458245	15458245	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	15458245	15458245	G	T	SNP	AGMO	ENST00000342526	human	ensembl	69_37n	-1	known	missense	c.547	p.P183T	1.000	pfam_Fatty_acid_hydroxylase	pfam_Fatty_acid_hydroxylase	-	no_errors	AGMO	HGNC	ENSG00000187546	36	0	0.00	34	4	10.53	-	-	-
AHDC1	0	genome.wustl.edu	37	1	27875353	27875355	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	27875353	27875355	AGG	-	DEL	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	in_frame_del	c.3274_3272	p.S1091in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	60	0	0.00	33	4	10.81	-	-	-
APOB	0	genome.wustl.edu	37	2	21229322	21229322	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	21229322	21229322	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.10418	p.A3473V	0.860	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	38	0	0.00	16	7	30.43	-	-	-
ATP7B	0	genome.wustl.edu	37	13	52518395	52518395	+	Silent	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	13	52518395	52518395	G	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	silent	c.3093	p.T1031	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	100	0	0.00	35	4	10.26	-	-	-
BBC3	0	genome.wustl.edu	37	19	47725123	47725123	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	47725123	47725123	T	C	SNP	BBC3	ENST00000439096	human	ensembl	69_37n	-1	known	missense	c.518	p.N173S	1.000	NULL	NULL	-	no_errors	BBC3	HGNC	ENSG00000105327	112	0	0.00	49	32	39.51	-	-	-
C11orf63	0	genome.wustl.edu	37	11	122805129	122805129	+	Missense_Mutation	SNP	A	A	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	11	122805129	122805129	A	T	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	+1	known	missense	c.980	p.N327I	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	61	0	0.00	31	20	39.22	-	-	-
CAPN2	0	genome.wustl.edu	37	1	223900497	223900497	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	223900497	223900497	C	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	+1	known	missense	c.155	p.P52Q	0.988	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	46	0	0.00	20	4	16.67	-	-	-
CCDC40	0	genome.wustl.edu	37	17	78064032	78064032	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	78064032	78064032	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	+1	known	missense	c.2927	p.Q976R	0.006	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	67	0	0.00	14	15	51.72	-	-	-
CLSTN3	0	genome.wustl.edu	37	12	7303269	7303269	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	12	7303269	7303269	A	G	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	+1	known	missense	c.2375	p.N792S	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	51	0	0.00	19	15	44.12	-	-	-
COL4A1	0	genome.wustl.edu	37	13	110847433	110847433	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	13	110847433	110847433	C	A	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.1318	p.G440C	0.872	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	53	0	0.00	30	4	11.76	-	-	-
COL4A2	0	genome.wustl.edu	37	13	111143635	111143635	+	Silent	SNP	G	G	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	13	111143635	111143635	G	C	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	+1	known	silent	c.3402	p.G1134	0.492	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	42	0	0.00	18	13	41.94	-	-	-
COL4A5	0	genome.wustl.edu	37	X	107834821	107834822	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	X	107834821	107834822	-	C	INS	COL4A5	ENST00000328300	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1370_1371	p.G460fs	0.871:0.765	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	89	0	0.00	51	20	28.17	-	-	-
CSMD2	0	genome.wustl.edu	37	1	34011768	34011768	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	34011768	34011768	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.8969	p.R2990H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	57	0	0.00	22	13	37.14	-	-	-
DKC1	0	genome.wustl.edu	37	X	154002897	154002897	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	X	154002897	154002897	G	T	SNP	DKC1	ENST00000369550	human	ensembl	69_37n	+1	known	missense	c.1176	p.M392I	1.000	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	58	0	0.00	22	4	15.38	-	-	-
DNMT3A	0	genome.wustl.edu	37	2	25469630	25469630	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	25469630	25469630	C	-	DEL	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	frame_shift_del	c.1138	p.A380fs	0.983	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	31	0	0.00	9	6	40.00	-	-	-
DNMT3A	0	genome.wustl.edu	37	2	25469632	25469632	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	25469632	25469632	C	-	DEL	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	frame_shift_del	c.1136	p.R379fs	0.997	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	28	0	0.00	7	6	42.86	-	-	-
DNMT3L	0	genome.wustl.edu	37	21	45670991	45670991	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	21	45670991	45670991	C	A	SNP	DNMT3L	ENST00000436357	human	ensembl	69_37n	-1	putative	missense	c.131	p.G44V	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNMT3L	HGNC	ENSG00000142182	36	0	0.00	17	4	19.05	-	-	-
EFTUD2	0	genome.wustl.edu	37	17	42928692	42928692	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	42928692	42928692	T	C	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.2869	p.M957V	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	32	0	0.00	13	3	18.75	-	-	-
EPAS1	0	genome.wustl.edu	37	2	46574117	46574117	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	46574117	46574117	C	A	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	+1	known	silent	c.132	p.P44	0.014	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	92	0	0.00	30	5	14.29	-	-	-
EXOC2	0	genome.wustl.edu	37	6	619510	619510	+	Silent	SNP	T	T	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	6	619510	619510	T	C	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	silent	c.456	p.L152	0.939	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	63	0	0.00	19	9	32.14	-	-	-
FAM20A	0	genome.wustl.edu	37	17	66533883	66533883	+	Splice_Site	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	66533883	66533883	C	A	SNP	FAM20A	ENST00000592554	human	ensembl	69_37n	-1	known	splice_site	c.1362-1	e11-1	1.000	-	-	-	no_errors	FAM20A	HGNC	ENSG00000108950	36	0	0.00	18	3	14.29	-	-	-
GALNT6	0	genome.wustl.edu	37	12	51758037	51758037	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	12	51758037	51758037	A	G	SNP	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	missense	c.917	p.F306S	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	221	1	0.45	114	15	11.63	-	-	-
GSDMC	0	genome.wustl.edu	37	8	130789734	130789734	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	130789734	130789734	G	A	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	missense	c.100	p.R34C	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	131	0	0.00	31	15	32.61	-	-	-
GTF2IRD2B	0	genome.wustl.edu	37	7	74564167	74564167	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	74564167	74564167	G	T	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	+1	known	missense	c.1914	p.R638S	0.106	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	45	0	0.00	26	4	13.33	-	-	-
HIVEP2	0	genome.wustl.edu	37	6	143075010	143075010	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	6	143075010	143075010	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.6575	p.G2192D	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	39	0	0.00	49	7	12.50	-	-	-
HMGXB4	0	genome.wustl.edu	37	22	35661431	35661431	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	22	35661431	35661431	C	A	SNP	HMGXB4	ENST00000216106	human	ensembl	69_37n	+1	known	silent	c.1050	p.A350	0.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	61	0	0.00	30	4	11.76	-	-	-
HNRNPL	0	genome.wustl.edu	37	19	39336615	39336615	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	39336615	39336615	G	T	SNP	HNRNPL	ENST00000221419	human	ensembl	69_37n	-1	known	missense	c.502	p.P168T	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	82	0	0.00	60	7	10.45	-	-	-
HTR7P1	0	genome.wustl.edu	37	12	13153397	13153397	+	RNA	SNP	G	G	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	12	13153397	13153397	G	C	SNP	HTR7P1	ENST00000535469	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HTR7P1	HGNC	ENSG00000183935	20	0	0.00	13	5	27.78	-	-	-
ITFG3	0	genome.wustl.edu	37	16	314108	314108	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	16	314108	314108	G	A	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	+1	known	missense	c.1282	p.A428T	0.926	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	70	0	0.00	33	23	41.07	-	-	-
JRK	0	genome.wustl.edu	37	8	143740215	143740215	+	RNA	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	143740215	143740215	G	T	SNP	JRK	ENST00000507178	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	43	0	0.00	21	3	12.50	-	-	-
KIAA1383	0	genome.wustl.edu	37	1	232943640	232943640	+	Silent	SNP	T	T	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	232943640	232943640	T	C	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	+1	known	silent	c.2871	p.N957	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	26	0	0.00	18	12	40.00	-	-	-
KIAA1522	0	genome.wustl.edu	37	1	33233706	33233706	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	33233706	33233706	C	A	SNP	KIAA1522	ENST00000401073	human	ensembl	69_37n	+1	known	silent	c.450	p.T150	1.000	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522	48	0	0.00	16	8	33.33	-	-	-
KIAA1524	0	genome.wustl.edu	37	3	108298527	108298527	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	3	108298527	108298527	C	A	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	silent	c.558	p.V186	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	27	0	0.00	25	21	45.65	-	-	-
KIAA1731	0	genome.wustl.edu	37	11	93429528	93429528	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	11	93429528	93429528	G	T	SNP	KIAA1731	ENST00000411936	human	ensembl	69_37n	+1	known	missense	c.1714	p.D572Y	0.985	NULL	NULL	-	no_errors	KIAA1731	HGNC	ENSG00000166004	42	0	0.00	33	4	10.81	-	-	-
KIAA1804	0	genome.wustl.edu	37	1	233512266	233512266	+	Silent	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	233512266	233512266	C	T	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	+1	known	silent	c.1917	p.D639	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	87	0	0.00	30	20	40.00	-	-	-
LIMK1	0	genome.wustl.edu	37	7	73520486	73520486	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	73520486	73520486	G	T	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	+1	known	missense	c.794	p.G265V	0.242	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	54	0	0.00	34	4	10.53	-	-	-
LRRC48	0	genome.wustl.edu	37	17	17907781	17907781	+	Silent	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	17907781	17907781	G	A	SNP	LRRC48	ENST00000313838	human	ensembl	69_37n	+1	known	silent	c.1104	p.L368	0.998	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	82	0	0.00	32	14	29.79	-	-	-
MLL3	0	genome.wustl.edu	37	7	151879136	151879136	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	151879136	151879136	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5809	p.Q1937*	0.047	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	70	0	0.00	26	18	40.91	-	-	-
NRXN1	0	genome.wustl.edu	37	2	50201237	50201237	+	Silent	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	50201237	50201237	G	T	SNP	NRXN1	ENST00000412315	human	ensembl	69_37n	-1	novel	silent	c.105	p.S35	1.000	NULL	smart_Neurexin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRXN1	HGNC	ENSG00000179915	51	0	0.00	28	4	12.50	-	-	-
PHF3	0	genome.wustl.edu	37	6	64404655	64404655	+	Splice_Site	SNP	G	G	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	6	64404655	64404655	G	C	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	+1	known	splice_site	c.2680+1	e5+1	1.000	-	-	-	no_errors	PHF3	HGNC	ENSG00000118482	28	0	0.00	28	4	12.50	-	-	-
PLA2G15	0	genome.wustl.edu	37	16	68293091	68293091	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	16	68293091	68293091	G	T	SNP	PLA2G15	ENST00000219345	human	ensembl	69_37n	+1	known	missense	c.770	p.R257L	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	70	0	0.00	36	4	10.00	-	-	-
PPP1R16A	0	genome.wustl.edu	37	8	145722633	145722633	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	145722633	145722633	C	T	SNP	PPP1R16A	ENST00000292539	human	ensembl	69_37n	+1	known	missense	c.56	p.T19I	1.000	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R16A	HGNC	ENSG00000160972	51	0	0.00	21	4	16.00	-	-	-
PRKDC	0	genome.wustl.edu	37	8	48812933	48812933	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	48812933	48812933	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.3364	p.G1122C	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	60	0	0.00	30	4	11.76	-	-	-
PRPSAP1	0	genome.wustl.edu	37	17	74324845	74324845	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	74324845	74324845	G	T	SNP	PRPSAP1	ENST00000446526	human	ensembl	69_37n	-1	known	missense	c.734	p.P245Q	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542	111	0	0.00	38	5	11.63	-	-	-
PVRL4	0	genome.wustl.edu	37	1	161042511	161042511	+	Silent	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	161042511	161042511	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	69_37n	-1	known	silent	c.1473	p.T491	0.962	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PVRL4	HGNC	ENSG00000143217	115	0	0.00	41	28	40.00	-	-	-
RBBP6	0	genome.wustl.edu	37	16	24583718	24583718	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	16	24583718	24583718	G	T	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	+1	known	missense	c.5331	p.E1777D	0.883	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	28	0	0.00	15	4	21.05	-	-	-
RNA5SP392	0	genome.wustl.edu	37	15	40623824	40623824	+	RNA	SNP	A	A	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	15	40623824	40623824	A	G	SNP	RNA5SP392	ENST00000516905	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNA5SP392	HGNC	ENSG00000252714	24	0	0.00	12	4	25.00	-	-	-
RNF220	0	genome.wustl.edu	37	1	44877815	44877815	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	44877815	44877815	C	T	SNP	RNF220	ENST00000355387	human	ensembl	69_37n	+1	known	missense	c.46	p.L16F	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147	106	0	0.00	50	10	16.67	-	-	-
RPAP1	0	genome.wustl.edu	37	15	41828343	41828343	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	15	41828343	41828343	C	T	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	missense	c.404	p.R135H	1.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	50	0	0.00	28	5	15.15	-	-	-
RPRD2	0	genome.wustl.edu	37	1	150445838	150445838	+	RNA	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	150445838	150445838	C	A	SNP	RPRD2	ENST00000492220	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125	33	0	0.00	23	4	14.81	-	-	-
RPS20	0	genome.wustl.edu	37	8	56986993	56986993	+	RNA	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	56986993	56986993	C	T	SNP	RPS20	ENST00000520490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPS20	HGNC	ENSG00000008988	19	0	0.00	9	4	30.77	-	-	-
RTKN	0	genome.wustl.edu	37	2	74659597	74659597	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	74659597	74659597	C	A	SNP	RTKN	ENST00000272430	human	ensembl	69_37n	-1	known	missense	c.308	p.R103L	1.000	NULL	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	105	0	0.00	35	4	10.26	-	-	-
SDK2	0	genome.wustl.edu	37	17	71375613	71375613	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	71375613	71375613	G	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.4838	p.P1613Q	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	51	0	0.00	22	3	12.00	-	-	-
SH3RF3	0	genome.wustl.edu	37	2	110107366	110107366	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	110107366	110107366	C	A	SNP	SH3RF3	ENST00000309415	human	ensembl	69_37n	+1	known	silent	c.2454	p.P818	0.002	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox	-	no_errors	SH3RF3	HGNC	ENSG00000172985	45	0	0.00	27	5	15.62	-	-	-
SLC22A8	0	genome.wustl.edu	37	11	62761059	62761059	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	11	62761059	62761059	C	A	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	nonsense	c.1366	p.G456*	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	61	0	0.00	33	4	10.81	-	-	-
SLC8A2	0	genome.wustl.edu	37	19	47960788	47960789	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	47960788	47960789	-	G	INS	SLC8A2	ENST00000236877	human	ensembl	69_37n	-1	known	frame_shift_ins	c.739_738	p.D246fs	1.000:0.926	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160	37	0	0.00	5	2	28.57	-	-	-
SPRR2G	0	genome.wustl.edu	37	1	153122539	153122539	+	Silent	SNP	A	A	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	153122539	153122539	A	G	SNP	SPRR2G	ENST00000368748	human	ensembl	69_37n	-1	known	silent	c.48	p.P16	0.345	NULL	NULL	-	no_errors	SPRR2G	HGNC	ENSG00000159516	164	0	0.00	99	30	23.26	-	-	-
STOX1	0	genome.wustl.edu	37	10	70644056	70644056	+	Silent	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	10	70644056	70644056	G	T	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	+1	known	silent	c.504	p.L168	1.000	pfam_Storkhead-box_winged-helix	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	44	0	0.00	15	3	16.67	-	-	-
SUN2	0	genome.wustl.edu	37	22	39137043	39137043	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	22	39137043	39137043	G	T	SNP	SUN2	ENST00000216064	human	ensembl	69_37n	-1	known	missense	c.1159	p.R387S	0.510	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242	74	0	0.00	27	3	10.00	-	-	-
SYNJ1	0	genome.wustl.edu	37	21	34018835	34018835	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	21	34018835	34018835	C	A	SNP	SYNJ1	ENST00000433931	human	ensembl	69_37n	-1	known	missense	c.3232	p.G1078C	0.998	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	55	0	0.00	27	4	12.90	-	-	-
TFPI2	0	genome.wustl.edu	37	7	93519971	93519972	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	93519971	93519972	-	G	INS	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	frame_shift_ins	c.20_19	p.L7fs	0.001:0.000	pirsf_Prot_inhib_I2_TFPI	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	9	0	0.00	10	2	16.67	-	-	-
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	64	0	0.00	31	4	11.43	-	-	-
TXNRD2	0	genome.wustl.edu	37	22	19886581	19886581	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	22	19886581	19886581	C	A	SNP	TXNRD2	ENST00000535882	human	ensembl	69_37n	-1	known	missense	c.670	p.G224W	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470	54	0	0.00	23	3	11.54	-	-	-
USH2A	0	genome.wustl.edu	37	1	216390733	216390733	+	Silent	SNP	G	G	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	216390733	216390733	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.3153	p.S1051	1.000	pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	53	0	0.00	31	5	13.89	-	-	-
USP25	0	genome.wustl.edu	37	21	17250132	17250132	+	Silent	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	21	17250132	17250132	C	A	SNP	USP25	ENST00000400183	human	ensembl	69_37n	+1	known	silent	c.3027	p.A1009	0.774	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	38	0	0.00	34	4	10.53	-	-	-
USP34	0	genome.wustl.edu	37	2	61484057	61484057	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	61484057	61484057	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.6077	p.E2026G	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	32	0	0.00	49	10	16.95	-	-	-
VCAN	0	genome.wustl.edu	37	5	82815219	82815219	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	5	82815219	82815219	C	A	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	+1	known	missense	c.1094	p.P365H	0.967	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	51	0	0.00	29	4	12.12	-	-	-
VPS51	0	genome.wustl.edu	37	11	64876339	64876339	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	11	64876339	64876339	C	A	SNP	VPS51	ENST00000279281	human	ensembl	69_37n	+1	known	missense	c.1396	p.L466I	1.000	NULL	pfam_Vps51,pfam_Dor1,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823	69	0	0.00	31	4	11.43	-	-	-
ZAK	0	genome.wustl.edu	37	2	174086217	174086219	+	In_Frame_Del	DEL	GAC	GAC	-			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	174086217	174086219	GAC	-	DEL	ZAK	ENST00000338983	human	ensembl	69_37n	+1	known	in_frame_del	c.1327_1329	p.D443in_frame_del	1.000:0.982:0.676	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	52	0	0.00	13	2	13.33	-	-	-
ZNF608	0	genome.wustl.edu	37	5	123972613	123972614	+	RNA	INS	-	-	A			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	5	123972613	123972614	-	A	INS	ZNF608	ENST00000513985	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.291:0.200	-	-	-	no_errors	ZNF608	HGNC	ENSG00000168916	9	0	0.00	13	10	43.48	-	-	-
ZNF814	0	genome.wustl.edu	37	19	58384274	58384274	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	58384274	58384274	A	-	DEL	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	frame_shift_del	c.2484	p.Y828fs	0.364	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	134	0	0.00	62	43	40.57	-	-	-
