Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AHNAK2	0	genome.wustl.edu	37	14	105417180	105417180	+	Silent	SNP	G	G	C			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	14	105417180	105417180	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.4608	p.L1536	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	117	0	0.00	69	23	25.00	-	-	-
AKAP9	0	genome.wustl.edu	37	7	91718705	91718705	+	Missense_Mutation	SNP	G	G	C			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	7	91718705	91718705	G	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	+1	known	missense	c.9232	p.E3078Q	0.994	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	78	0	0.00	74	14	15.91	-	-	-
ALOX5AP	0	genome.wustl.edu	37	13	31338226	31338226	+	Missense_Mutation	SNP	C	C	G			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	13	31338226	31338226	C	G	SNP	ALOX5AP	ENST00000380490	human	ensembl	69_37n	+1	known	missense	c.469	p.L157V	0.959	NULL	pfam_Membr-assoc_MAPEG,prints_5_LipOase_AP	-	no_errors	ALOX5AP	HGNC	ENSG00000132965	67	0	0.00	72	14	16.28	-	-	-
ANKRD11	0	genome.wustl.edu	37	16	89351908	89351908	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	16	89351908	89351908	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.1042	p.E348K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	111	0	0.00	67	24	26.37	-	-	-
BBS12	0	genome.wustl.edu	37	4	123664254	123664254	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	123664254	123664254	G	A	SNP	BBS12	ENST00000314218	human	ensembl	69_37n	+1	known	missense	c.1207	p.V403M	0.001	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS12	HGNC	ENSG00000181004	35	0	0.00	30	7	18.92	-	-	-
DHX9	0	genome.wustl.edu	37	1	182836152	182836152	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	1	182836152	182836152	G	T	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	+1	known	missense	c.1531	p.D511Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	16	0	0.00	13	5	27.78	-	-	-
DTX1	0	genome.wustl.edu	37	12	113534596	113534596	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	113534596	113534596	C	A	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	+1	known	nonsense	c.1715	p.S572*	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	67	0	0.00	49	23	31.94	-	-	-
ENSG00000257921	0	genome.wustl.edu	37	12	58176985	58176985	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	58176985	58176985	C	T	SNP	ENSG00000257921	ENST00000471530	human	ensembl	69_37n	+1	known	missense	c.194	p.S65L	0.974	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RP11-571M6.15	Clone_based_vega_gene	ENSG00000257921	25	0	0.00	19	6	24.00	-	-	-
EPB41L3	0	genome.wustl.edu	37	18	5433996	5433996	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	18	5433996	5433996	C	T	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.730	p.E244K	1.000	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	40	0	0.00	37	15	28.85	-	-	-
FAT1	0	genome.wustl.edu	37	4	187535469	187535469	+	Silent	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	187535469	187535469	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	silent	c.9105	p.D3035	0.950	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	38	0	0.00	33	7	17.50	-	-	-
FLJ43681	0	genome.wustl.edu	37	17	81187931	81187931	+	RNA	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	17	81187931	81187931	G	A	SNP	FLJ43681	ENST00000425566	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	AC139099.3	Clone_based_vega_gene	ENSG00000232938	123	0	0.00	68	15	18.07	-	-	-
FRG1	0	genome.wustl.edu	37	4	190878562	190878562	+	Missense_Mutation	SNP	G	G	C			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	190878562	190878562	G	C	SNP	FRG1	ENST00000226798	human	ensembl	69_37n	+1	known	missense	c.442	p.A148P	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536	74	0	0.00	63	8	11.27	-	-	-
GOLGA8J	0	genome.wustl.edu	37	15	30437636	30437636	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	15	30437636	30437636	G	A	SNP	GOLGA8J	ENST00000569052	human	ensembl	69_37n	+1	novel	missense	c.1762	p.A588T	0.079	NULL	NULL	-	no_errors	RP5-1086D14.3	Clone_based_vega_gene	ENSG00000261247	9	0	0.00	4	4	50.00	-	-	-
HDAC1	0	genome.wustl.edu	37	1	32790085	32790085	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	1	32790085	32790085	G	A	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	+1	known	missense	c.286	p.V96I	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	148	0	0.00	119	19	13.77	-	-	-
HDLBP	0	genome.wustl.edu	37	2	242170255	242170255	+	Silent	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	2	242170255	242170255	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	silent	c.3393	p.D1131	0.787	smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	46	0	0.00	56	13	18.84	-	-	-
KCNA7	0	genome.wustl.edu	37	19	49573895	49573895	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	19	49573895	49573895	C	T	SNP	KCNA7	ENST00000221444	human	ensembl	69_37n	-1	known	missense	c.796	p.G266R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	34	0	0.00	23	13	36.11	-	-	-
KDR	0	genome.wustl.edu	37	4	55955041	55955042	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	55955041	55955042	-	G	INS	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3504_3503	p.Q1169fs	0.721:0.984	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	64	0	0.00	51	6	10.53	-	-	-
LINC00281	0	genome.wustl.edu	37	22	21662329	21662329	+	RNA	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	22	21662329	21662329	G	A	SNP	LINC00281	ENST00000436681	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	LINC00281	HGNC	ENSG00000206142	11	0	0.00	11	5	31.25	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56179458	56179458	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	5	56179458	56179458	T	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.3771	p.Y1258fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	28	0	0.00	42	9	17.31	-	-	-
MARC1	0	genome.wustl.edu	37	1	220964935	220964935	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	1	220964935	220964935	C	A	SNP	MARC1	ENST00000407981	human	ensembl	69_37n	+1	putative	missense	c.103	p.Q35K	1.000	pfam_MOSC_N	pfam_MoCF_Sase_C,pfam_MOSC_N,superfamily_Pyrv_Knase-like_insert_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MARC1	HGNC	ENSG00000186205	65	0	0.00	71	8	10.13	-	-	-
MEGF11	0	genome.wustl.edu	37	15	66273187	66273187	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	15	66273187	66273187	G	A	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	missense	c.691	p.R231C	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	53	0	0.00	24	6	20.00	-	-	-
METTL18	0	genome.wustl.edu	37	1	169762443	169762443	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	1	169762443	169762443	C	A	SNP	METTL18	ENST00000303469	human	ensembl	69_37n	-1	known	missense	c.394	p.V132L	0.751	NULL	pfam_Nicotinamide_N-MeTfrase-like,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom	-	no_errors	METTL18	HGNC	ENSG00000171806	35	0	0.00	66	12	15.38	-	-	-
MICAL3	0	genome.wustl.edu	37	22	18371885	18371885	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	22	18371885	18371885	G	A	SNP	MICAL3	ENST00000461307	human	ensembl	69_37n	-1	putative	missense	c.362	p.P121L	0.996	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MICAL3	HGNC	ENSG00000243156	65	0	0.00	49	7	12.50	-	-	-
MLL3	0	genome.wustl.edu	37	7	152007146	152007146	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	7	152007146	152007146	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.754	p.H252Y	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	43	0	0.00	33	12	26.67	-	-	-
MUC12	0	genome.wustl.edu	37	7	100641745	100641745	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	7	100641745	100641745	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.8330	p.R2777H	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	17	0	0.00	4	2	33.33	-	-	-
PATE3	0	genome.wustl.edu	37	11	125659317	125659317	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	11	125659317	125659317	G	A	SNP	PATE3	ENST00000445202	human	ensembl	69_37n	+1	known	missense	c.86	p.R29H	0.063	NULL	NULL	-	no_errors	PATE3	HGNC	ENSG00000236027	38	0	0.00	50	14	21.88	-	-	-
PBX2P1	0	genome.wustl.edu	37	3	142897223	142897223	+	RNA	SNP	T	T	G			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	3	142897223	142897223	T	G	SNP	PBX2P1	ENST00000560287	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171	13	0	0.00	8	4	33.33	-	-	-
PCDHA9	0	genome.wustl.edu	37	5	140229433	140229433	+	Silent	SNP	C	C	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	5	140229433	140229433	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	+1	known	silent	c.1353	p.N451	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	115	0	0.00	50	40	44.44	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	22	0	0.00	15	6	28.57	-	-	-
RACGAP1	0	genome.wustl.edu	37	12	50410433	50410433	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	50410433	50410433	G	T	SNP	RACGAP1	ENST00000548247	human	ensembl	69_37n	-1	putative	nonsense	c.47	p.S16*	1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	RACGAP1	HGNC	ENSG00000161800	30	0	0.00	32	4	11.11	-	-	-
SOAT2	0	genome.wustl.edu	37	12	53498996	53498996	+	Missense_Mutation	SNP	C	C	G			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	53498996	53498996	C	G	SNP	SOAT2	ENST00000301466	human	ensembl	69_37n	+1	known	missense	c.244	p.L82V	0.001	NULL	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780	26	0	0.00	19	6	24.00	-	-	-
