Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
A2MP1	0	genome.wustl.edu	37	12	9413853	9413853	+	RNA	SNP	T	T	C			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	12	9413853	9413853	T	C	SNP	A2MP1	ENST00000544183	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	24	0	0.00	30	5	14.29	-	-	-
AKR1CL1	0	genome.wustl.edu	37	10	5199934	5199934	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	10	5199934	5199934	G	C	SNP	AKR1CL1	ENST00000473890	human	ensembl	69_37n	-1	novel	missense	c.232	p.R78G	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1CL1	HGNC	ENSG00000196326	28	0	0.00	60	9	13.04	-	-	-
ANP32AP1	0	genome.wustl.edu	37	15	35529406	35529406	+	RNA	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	15	35529406	35529406	C	T	SNP	ANP32AP1	ENST00000560832	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	ANP32AP1	HGNC	ENSG00000259516	9	0	0.00	43	8	15.69	-	-	-
ASTN2	0	genome.wustl.edu	37	9	119770383	119770383	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	9	119770383	119770383	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.1579	p.D527N	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	22	0	0.00	50	13	20.63	-	-	-
CEP152	0	genome.wustl.edu	37	15	49085545	49085545	+	Silent	SNP	G	G	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	15	49085545	49085545	G	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	silent	c.805	p.L269	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	16	0	0.00	56	16	22.22	-	-	-
DCUN1D4	0	genome.wustl.edu	37	4	52780048	52780048	+	RNA	SNP	G	G	C			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	4	52780048	52780048	G	C	SNP	DCUN1D4	ENST00000508257	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCUN1D4	HGNC	ENSG00000109184	24	0	0.00	38	6	13.33	-	-	-
DENND2D	0	genome.wustl.edu	37	1	111730159	111730159	+	RNA	SNP	G	G	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	111730159	111730159	G	A	SNP	DENND2D	ENST00000468692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	35	0	0.00	100	15	13.04	-	-	-
DENND2D	0	genome.wustl.edu	37	1	111730160	111730160	+	RNA	SNP	C	C	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	111730160	111730160	C	A	SNP	DENND2D	ENST00000468692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	35	0	0.00	100	14	12.28	-	-	-
EGFLAM	0	genome.wustl.edu	37	5	38370546	38370546	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	5	38370546	38370546	G	T	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	+1	known	missense	c.694	p.D232Y	0.003	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	18	0	0.00	35	10	22.22	-	-	-
FAM89A	0	genome.wustl.edu	37	1	231161773	231161773	+	RNA	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	231161773	231161773	C	T	SNP	FAM89A	ENST00000494111	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM89A	HGNC	ENSG00000182118	9	0	0.00	18	18	50.00	-	-	-
FLG	0	genome.wustl.edu	37	1	152280782	152280782	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	152280782	152280782	A	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.6580	p.Y2194H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	83	0	0.00	156	24	13.26	-	-	-
GPC2	0	genome.wustl.edu	37	7	99767587	99767587	+	RNA	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	7	99767587	99767587	A	G	SNP	GPC2	ENST00000471050	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPC2	HGNC	ENSG00000213420	16	0	0.00	27	11	28.95	-	-	-
HERC2P4	0	genome.wustl.edu	37	16	32192670	32192670	+	RNA	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	16	32192670	32192670	C	T	SNP	HERC2P4	ENST00000568097	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.939	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267	46	0	0.00	91	17	15.74	-	-	-
HOXA5	0	genome.wustl.edu	37	7	27181431	27181431	+	RNA	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	7	27181431	27181431	C	T	SNP	HOXA5	ENST00000520854	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	HOXA5	HGNC	ENSG00000106004	19	0	0.00	28	12	30.00	-	-	-
LHX9	0	genome.wustl.edu	37	1	197898292	197898292	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	197898292	197898292	C	G	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	+1	known	missense	c.1097	p.T366S	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	17	0	0.00	32	10	23.81	-	-	-
LRRC63	0	genome.wustl.edu	37	13	46801970	46801970	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	13	46801970	46801970	A	G	SNP	LRRC63	ENST00000446175	human	ensembl	69_37n	+1	known	missense	c.409	p.M137V	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC63	HGNC	ENSG00000173988	13	0	0.00	25	5	16.67	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56161269	56161271	+	In_Frame_Del	DEL	TTA	TTA	-			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	TTA	TTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	5	56161269	56161271	TTA	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	in_frame_del	c.1138_1140	p.L380in_frame_del	0.988:0.999:0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	23	0	0.00	51	10	16.13	-	-	-
MGC34034	0	genome.wustl.edu	37	6	134142606	134142606	+	RNA	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	6	134142606	134142606	A	G	SNP	MGC34034	ENST00000456347	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-662A9.2	Clone_based_vega_gene	ENSG00000223586	18	0	0.00	22	5	18.52	-	-	-
MTRNR2L3	0	genome.wustl.edu	37	20	55934083	55934083	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	20	55934083	55934083	T	C	SNP	MTRNR2L3	ENST00000543500	human	ensembl	69_37n	-1	known	missense	c.13	p.R5G	1.000	NULL	NULL	-	no_errors	MTRNR2L3	HGNC	ENSG00000256222	22	0	0.00	30	5	14.29	-	-	-
MUC4	0	genome.wustl.edu	37	3	195511390	195511390	+	Missense_Mutation	SNP	T	T	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	3	195511390	195511390	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.7061	p.H2354P	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	48	0	0.00	76	11	12.64	-	-	-
MUC4	0	genome.wustl.edu	37	3	195513779	195513779	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	3	195513779	195513779	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.4672	p.A1558T	0.004	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	48	0	0.00	47	6	11.11	-	-	-
NPAS2	0	genome.wustl.edu	37	2	101437561	101437561	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	2	101437561	101437561	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	+1	known	missense	c.73	p.E25K	0.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	31	0	0.00	54	7	11.29	-	-	-
NTN3	0	genome.wustl.edu	37	16	2522060	2522060	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	16	2522060	2522060	G	C	SNP	NTN3	ENST00000293973	human	ensembl	69_37n	+1	known	missense	c.358	p.V120L	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN3	HGNC	ENSG00000162068	24	0	0.00	40	7	14.58	-	-	-
NUP155	0	genome.wustl.edu	37	5	37350364	37350364	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	5	37350364	37350364	C	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.727	p.E243K	1.000	pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	16	0	0.00	87	39	30.71	-	-	-
ODZ4	0	genome.wustl.edu	37	11	78381280	78381280	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	11	78381280	78381280	G	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.6110	p.T2037K	0.976	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	28	0	0.00	47	11	18.97	-	-	-
PLA2G6	0	genome.wustl.edu	37	22	38543453	38543453	+	RNA	SNP	T	T	C			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	22	38543453	38543453	T	C	SNP	PLA2G6	ENST00000420435	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLA2G6	HGNC	ENSG00000184381	28	0	0.00	63	9	12.50	-	-	-
RAET1K	0	genome.wustl.edu	37	6	150326267	150326267	+	RNA	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	6	150326267	150326267	A	G	SNP	RAET1K	ENST00000533735	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAET1K	HGNC	ENSG00000218358	38	0	0.00	36	4	10.00	-	-	-
RBMXL3	0	genome.wustl.edu	37	X	114427149	114427149	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	X	114427149	114427149	A	G	SNP	RBMXL3	ENST00000424776	human	ensembl	69_37n	+1	known	missense	c.3145	p.R1049G	0.987	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	16	0	0.00	9	11	55.00	-	-	-
RRP12	0	genome.wustl.edu	37	10	99118293	99118293	+	Splice_Site	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	10	99118293	99118293	C	T	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	splice_site	c.3791+1	e33+1	1.000	-	-	-	no_errors	RRP12	HGNC	ENSG00000052749	11	0	0.00	19	5	20.83	-	-	-
SLC43A3	0	genome.wustl.edu	37	11	57177569	57177569	+	Silent	SNP	G	G	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	11	57177569	57177569	G	A	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	silent	c.1086	p.L362	0.953	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	13	0	0.00	14	6	30.00	-	-	-
SOCS2	0	genome.wustl.edu	37	12	93968720	93968720	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	12	93968720	93968720	G	T	SNP	SOCS2	ENST00000340600	human	ensembl	69_37n	+1	known	missense	c.362	p.S121I	1.000	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,prints_SH2,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS2	HGNC	ENSG00000120833	9	0	0.00	21	5	19.23	-	-	-
SPIN2A	0	genome.wustl.edu	37	X	57162385	57162385	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	X	57162385	57162385	A	G	SNP	SPIN2A	ENST00000374906	human	ensembl	69_37n	-1	known	missense	c.646	p.Y216H	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN2A	HGNC	ENSG00000147059	30	0	0.00	51	11	17.74	-	-	-
TNS3	0	genome.wustl.edu	37	7	47481602	47481602	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	7	47481602	47481602	G	A	SNP	TNS3	ENST00000457718	human	ensembl	69_37n	-1	putative	missense	c.286	p.R96W	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Tyr_Pase_cat,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_stop_codon:bad_bp_length_for_coding_region	TNS3	HGNC	ENSG00000136205	8	0	0.00	16	15	48.39	-	-	-
TPTE2P1	0	genome.wustl.edu	37	13	25541467	25541467	+	RNA	SNP	C	C	T			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	13	25541467	25541467	C	T	SNP	TPTE2P1	ENST00000381871	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	TPTE2P1	HGNC	ENSG00000253771	19	0	0.00	43	8	15.69	-	-	-
TRIM62	0	genome.wustl.edu	37	1	33623922	33623922	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	33623922	33623922	G	-	DEL	TRIM62	ENST00000291416	human	ensembl	69_37n	-1	known	frame_shift_del	c.809	p.P270fs	0.999	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM62	HGNC	ENSG00000116525	44	0	0.00	50	8	13.79	-	-	-
ZNF710	0	genome.wustl.edu	37	15	90611206	90611206	+	Silent	SNP	G	G	A			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	15	90611206	90611206	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	+1	known	silent	c.837	p.Q279	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	20	0	0.00	34	8	19.05	-	-	-
