Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACR	0	genome.wustl.edu	37	22	51183255	51183255	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	51183255	51183255	A	G	SNP	ACR	ENST00000216139	human	ensembl	69_37n	+1	known	missense	c.886	p.M296V	0.001	pirsf_Pept_S1A_acrosin	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Pept_S1A_acrosin,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ACR	HGNC	ENSG00000100312	18	0	0.00	25	10	28.57	-	-	-
ACSM5	0	genome.wustl.edu	37	16	20442562	20442562	+	Silent	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	20442562	20442562	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	+1	known	silent	c.1227	p.N409	0.043	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	45	0	0.00	73	9	10.98	-	-	-
ADAM21P1	0	genome.wustl.edu	37	14	70713858	70713858	+	RNA	SNP	T	T	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	70713858	70713858	T	C	SNP	ADAM21P1	ENST00000530196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	31	0	0.00	50	7	12.28	-	-	-
ANKRD62P1-PARP4P3	0	genome.wustl.edu	37	22	17156061	17156061	+	RNA	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	17156061	17156061	A	G	SNP	ANKRD62P1-PARP4P3	ENST00000338526	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ANKRD62P1-PARP4P3	HGNC	ENSG00000189295	41	0	0.00	40	6	13.04	-	-	-
ARHGEF38	0	genome.wustl.edu	37	4	106580340	106580340	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	4	106580340	106580340	A	G	SNP	ARHGEF38	ENST00000420470	human	ensembl	69_37n	+1	putative	missense	c.1363	p.T455A	0.001	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	40	0	0.00	59	7	10.61	-	-	-
BCORL1	0	genome.wustl.edu	37	X	129149548	129149548	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	129149548	129149548	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	+1	known	missense	c.2800	p.A934S	0.643	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	28	0	0.00	44	8	15.38	-	-	-
BCORL1	0	genome.wustl.edu	37	X	129149549	129149549	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	129149549	129149549	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	+1	known	missense	c.2801	p.A934V	0.623	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	28	0	0.00	43	7	13.73	-	-	-
C1orf167	0	genome.wustl.edu	37	1	11838848	11838848	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	11838848	11838848	G	T	SNP	C1orf167	ENST00000433342	human	ensembl	69_37n	+1	known	missense	c.2543	p.S848I	0.000	NULL	NULL	-	no_errors	C1orf167	HGNC	ENSG00000215910	36	0	0.00	42	6	12.50	-	-	-
C6orf183	0	genome.wustl.edu	37	6	109517706	109517706	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	109517706	109517706	G	A	SNP	C6orf183	ENST00000417143	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	C6orf183	HGNC	ENSG00000243587	50	0	0.00	47	10	16.95	-	-	-
CCDC162P	0	genome.wustl.edu	37	6	109621494	109621494	+	RNA	SNP	T	T	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	109621494	109621494	T	C	SNP	CCDC162P	ENST00000422819	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC162P	HGNC	ENSG00000203799	34	0	0.00	32	4	11.11	-	-	-
CCZ1	0	genome.wustl.edu	37	7	5965334	5965334	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	5965334	5965334	C	T	SNP	CCZ1	ENST00000496860	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCZ1	HGNC	ENSG00000122674	31	0	0.00	39	7	15.22	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862109	68862110	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	68862109	68862110	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2197_2198	p.R734fs	0.999:1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	70	0	0.00	56	22	28.21	-	-	-
CEP250	0	genome.wustl.edu	37	20	34062642	34062642	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	34062642	34062642	C	T	SNP	CEP250	ENST00000425096	human	ensembl	69_37n	+1	novel	missense	c.76	p.R26C	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP250	HGNC	ENSG00000126001	40	0	0.00	54	6	10.00	-	-	-
COL6A5	0	genome.wustl.edu	37	3	130159281	130159283	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	130159281	130159283	CAC	-	DEL	COL6A5	ENST00000265379	human	ensembl	69_37n	+1	known	in_frame_del	c.6099_6101	p.T2034in_frame_del	0.002:0.018:0.097	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	24	0	0.00	31	6	16.22	-	-	-
CSE1L	0	genome.wustl.edu	37	20	47713063	47713063	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	47713063	47713063	C	T	SNP	CSE1L	ENST00000469700	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	CSE1L	HGNC	ENSG00000124207	26	0	0.00	17	4	19.05	-	-	-
CSMD2	0	genome.wustl.edu	37	1	34025030	34025030	+	Silent	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	34025030	34025030	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.8424	p.T2808	0.998	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	27	0	0.00	28	4	12.50	-	-	-
CTNNA1	0	genome.wustl.edu	37	5	138118920	138118920	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	5	138118920	138118920	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	+1	known	missense	c.160	p.R54C	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	29	0	0.00	45	14	23.73	-	-	-
CYP2G1P	0	genome.wustl.edu	37	19	41405962	41405962	+	Missense_Mutation	SNP	T	T	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	19	41405962	41405962	T	G	SNP	CYP2G1P	ENST00000252909	human	ensembl	69_37n	+1	known	missense	c.412	p.C138G	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_start_codon	CYP2G1P	HGNC	ENSG00000130612	12	0	0.00	24	5	17.24	-	-	-
DTX2P1	0	genome.wustl.edu	37	7	76629626	76629626	+	Splice_Site	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	76629626	76629626	G	A	SNP	DTX2P1	ENST00000425797	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	0.470	-	-	-	no_coding_region:pseudogene	DTX2P1	HGNC	ENSG00000186704	35	0	0.00	32	4	11.11	-	-	-
EIF2B3	0	genome.wustl.edu	37	1	45424509	45424509	+	RNA	SNP	G	G	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	45424509	45424509	G	C	SNP	EIF2B3	ENST00000487532	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EIF2B3	HGNC	ENSG00000070785	26	0	0.00	35	9	20.00	-	-	-
ENSG00000226232	0	genome.wustl.edu	37	16	70010517	70010519	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	70010517	70010519	TGT	-	DEL	ENSG00000226232	ENST00000532298	human	ensembl	69_37n	-1	novel	in_frame_del	c.761_759	p.Q253in_frame_del	0.600:0.610:0.620	pfam_NPIP	pfam_NPIP	-	no_errors	RP11-419C5.2	Clone_based_vega_gene	ENSG00000226232	13	0	0.00	7	6	46.15	-	-	-
EPHA4	0	genome.wustl.edu	37	2	222282765	222282765	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222282765	222282765	C	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	30	0	0.00	43	5	10.42	-	-	-
EPHA4	0	genome.wustl.edu	37	2	222282959	222282959	+	RNA	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222282959	222282959	G	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.516	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	25	0	0.00	24	5	17.24	-	-	-
EPHA4	0	genome.wustl.edu	37	2	222283000	222283000	+	RNA	SNP	A	A	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222283000	222283000	A	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	22	0	0.00	22	6	21.43	-	-	-
EPHA4	0	genome.wustl.edu	37	2	222283281	222283281	+	RNA	SNP	T	T	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222283281	222283281	T	C	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.938	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	19	0	0.00	20	5	20.00	-	-	-
EPHA4	0	genome.wustl.edu	37	2	222284646	222284646	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222284646	222284646	C	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	21	0	0.00	23	9	28.12	-	-	-
EPHA4	0	genome.wustl.edu	37	2	222284686	222284686	+	RNA	SNP	G	G	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222284686	222284686	G	C	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.994	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	22	0	0.00	23	6	20.00	-	-	-
FAM99B	0	genome.wustl.edu	37	11	1705513	1705513	+	RNA	SNP	C	C	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	1705513	1705513	C	G	SNP	FAM99B	ENST00000382166	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM99B	HGNC	ENSG00000205865	47	0	0.00	64	9	12.33	-	-	-
FER1L4	0	genome.wustl.edu	37	20	34194243	34194243	+	RNA	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	34194243	34194243	A	G	SNP	FER1L4	ENST00000426117	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.916	-	-	-	no_errors	FER1L4	HGNC	ENSG00000088340	29	0	0.00	34	4	10.26	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	53	0	0.00	42	7	14.29	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	48	0	0.00	45	8	15.09	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29624093	29624093	+	Splice_Site	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	29624093	29624093	G	T	SNP	FRG1B	ENST00000278882	human	ensembl	69_37n	+1	known	splice_site	c.116+1	e2+1	1.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	36	0	0.00	34	8	19.05	-	-	-
FRMPD2	0	genome.wustl.edu	37	10	49388901	49388901	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	10	49388901	49388901	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2735	p.G912E	0.000	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	41	0	0.00	59	11	15.71	-	-	-
FUCA2	0	genome.wustl.edu	37	6	143832677	143832677	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	143832677	143832677	G	A	SNP	FUCA2	ENST00000002165	human	ensembl	69_37n	-1	known	missense	c.95	p.T32M	0.010	pfam_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA2	HGNC	ENSG00000001036	32	0	0.00	30	8	21.05	-	-	-
GABRQ	0	genome.wustl.edu	37	X	151821277	151821277	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	151821277	151821277	T	A	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	+1	known	missense	c.1432	p.F478I	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	18	0	0.00	44	9	16.98	-	-	-
GFM1	0	genome.wustl.edu	37	3	158367837	158367837	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	158367837	158367837	C	T	SNP	GFM1	ENST00000264263	human	ensembl	69_37n	+1	novel	missense	c.733	p.R245C	0.000	pfam_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	37	0	0.00	80	11	12.09	-	-	-
GOLGA2	0	genome.wustl.edu	37	9	131020796	131020798	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	9	131020796	131020798	CCT	-	DEL	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	in_frame_del	c.2146_2144	p.E715in_frame_del	0.000:0.000:0.004	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	29	0	0.00	20	4	16.67	-	-	-
GVINP1	0	genome.wustl.edu	37	11	6738952	6738952	+	RNA	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	6738952	6738952	G	T	SNP	GVINP1	ENST00000526769	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	21	0	0.00	30	6	16.67	-	-	-
GVINP1	0	genome.wustl.edu	37	11	6740206	6740206	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	6740206	6740206	C	T	SNP	GVINP1	ENST00000526769	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	33	0	0.00	35	4	10.26	-	-	-
HKDC1	0	genome.wustl.edu	37	10	71027231	71027231	+	RNA	SNP	G	G	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	10	71027231	71027231	G	C	SNP	HKDC1	ENST00000486754	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HKDC1	HGNC	ENSG00000156510	78	0	0.00	95	11	10.38	-	-	-
HLA-J	0	genome.wustl.edu	37	6	29975994	29975994	+	RNA	SNP	C	C	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	29975994	29975994	C	A	SNP	HLA-J	ENST00000462773	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622	31	0	0.00	38	9	19.15	-	-	-
HLA-J	0	genome.wustl.edu	37	6	29976024	29976024	+	RNA	SNP	C	C	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	29976024	29976024	C	G	SNP	HLA-J	ENST00000462773	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622	30	0	0.00	40	9	18.37	-	-	-
HYDIN	0	genome.wustl.edu	37	16	71015329	71015329	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	71015329	71015329	G	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.4472	p.P1491H	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	41	0	0.00	41	6	12.77	-	-	-
IGHG4	0	genome.wustl.edu	37	14	106092383	106092383	+	Silent	SNP	C	C	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	106092383	106092383	C	G	SNP	IGHG4	ENST00000390543	human	ensembl	69_37n	-1	known	silent	c.21	p.S7	0.271	pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHG4	HGNC	ENSG00000211892	15	0	0.00	20	9	31.03	-	-	-
IGLJ3	0	genome.wustl.edu	37	22	23247082	23247082	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	23247082	23247082	C	T	SNP	IGLJ3	ENST00000390324	human	ensembl	69_37n	+1	known	missense	c.28	p.P10S	0.009	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IGLJ3	HGNC	ENSG00000211678	65	0	0.00	48	7	11.86	-	-	-
IGLV5-48	0	genome.wustl.edu	37	22	22707309	22707309	+	Silent	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	22707309	22707309	C	T	SNP	IGLV5-48	ENST00000390293	human	ensembl	69_37n	+1	known	silent	c.21	p.L7	0.007	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGLV5-48	HGNC	ENSG00000211647	54	0	0.00	44	5	10.20	-	-	-
IMPACT	0	genome.wustl.edu	37	18	22028136	22028136	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	18	22028136	22028136	C	T	SNP	IMPACT	ENST00000284202	human	ensembl	69_37n	+1	known	missense	c.748	p.H250Y	1.000	pfam_Impact_N,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Impact_N,pfam_RWD-domain,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	IMPACT	HGNC	ENSG00000154059	51	0	0.00	44	18	29.03	-	-	-
KLRF2	0	genome.wustl.edu	37	12	10046052	10046052	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	12	10046052	10046052	C	A	SNP	KLRF2	ENST00000535540	human	ensembl	69_37n	+1	known	missense	c.391	p.P131T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRF2	HGNC	ENSG00000256797	21	0	0.00	30	6	16.67	-	-	-
KNCN	0	genome.wustl.edu	37	1	47013180	47013180	+	RNA	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	47013180	47013180	A	G	SNP	KNCN	ENST00000524908	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	KNCN	HGNC	ENSG00000162456	39	0	0.00	37	5	11.90	-	-	-
LINC00152	0	genome.wustl.edu	37	2	87755101	87755101	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	87755101	87755101	C	T	SNP	LINC00152	ENST00000409054	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00152	HGNC	ENSG00000222041	46	0	0.00	47	12	20.34	-	-	-
LINC00243	0	genome.wustl.edu	37	6	30782235	30782235	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	30782235	30782235	G	A	SNP	LINC00243	ENST00000399196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LINC00243	HGNC	ENSG00000214894	45	0	0.00	56	9	13.85	-	-	-
LOXL1	0	genome.wustl.edu	37	15	74244344	74244344	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	15	74244344	74244344	C	T	SNP	LOXL1	ENST00000567675	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.103	-	-	-	no_errors	LOXL1	HGNC	ENSG00000129038	53	0	0.00	47	8	14.55	-	-	-
MAGEA12	0	genome.wustl.edu	37	X	151900503	151900503	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	151900503	151900503	C	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.298	p.D100H	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	64	0	0.00	66	18	21.18	-	-	-
MBNL2	0	genome.wustl.edu	37	13	97995412	97995412	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	13	97995412	97995412	C	T	SNP	MBNL2	ENST00000376673	human	ensembl	69_37n	+1	known	missense	c.482	p.P161L	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793	42	0	0.00	48	6	11.11	-	-	-
MED21	0	genome.wustl.edu	37	12	27181513	27181513	+	RNA	SNP	T	T	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	12	27181513	27181513	T	G	SNP	MED21	ENST00000536503	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	MED21	HGNC	ENSG00000152944	36	0	0.00	39	6	13.04	-	-	-
MLC1	0	genome.wustl.edu	37	22	50506877	50506877	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	50506877	50506877	G	T	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	nonsense	c.879	p.Y293*	0.999	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	38	0	0.00	25	7	21.88	-	-	-
MLIP	0	genome.wustl.edu	37	6	54002231	54002231	+	Missense_Mutation	SNP	A	A	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	54002231	54002231	A	C	SNP	MLIP	ENST00000502396	human	ensembl	69_37n	+1	putative	missense	c.1364	p.E455A	0.002	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147	20	0	0.00	28	5	15.15	-	-	-
MMP25	0	genome.wustl.edu	37	16	3097494	3097494	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	3097494	3097494	G	A	SNP	MMP25	ENST00000336577	human	ensembl	69_37n	+1	known	missense	c.178	p.D60N	0.475	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP25	HGNC	ENSG00000008516	65	0	0.00	108	37	25.52	-	-	-
MRGPRG-AS1	0	genome.wustl.edu	37	11	3243346	3243346	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	3243346	3243346	C	T	SNP	MRGPRG-AS1	ENST00000420873	human	ensembl	69_37n	+1	known	missense	c.404	p.S135F	0.029	NULL	NULL	-	no_errors	MRGPRG-AS1	HGNC	ENSG00000236301	28	0	0.00	36	4	10.00	-	-	-
MT1P3	0	genome.wustl.edu	37	20	33864484	33864484	+	RNA	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	33864484	33864484	A	G	SNP	MT1P3	ENST00000435366	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MT1P3	HGNC	ENSG00000126005	25	0	0.00	36	4	10.00	-	-	-
MTX1	0	genome.wustl.edu	37	1	155181843	155181843	+	RNA	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	155181843	155181843	G	T	SNP	MTX1	ENST00000481771	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTX1	HGNC	ENSG00000173171	38	0	0.00	58	7	10.77	-	-	-
MYO15B	0	genome.wustl.edu	37	17	73609112	73609112	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	73609112	73609112	G	A	SNP	MYO15B	ENST00000578462	human	ensembl	69_37n	+1	putative	missense	c.346	p.A116T	0.001	pfscan_MyTH4_dom	pfscan_MyTH4_dom	-	no_stop_codon:bad_bp_length_for_coding_region	MYO15B	Clone_based_vega_gene	ENSG00000266714	31	0	0.00	34	5	12.82	-	-	-
NF1	0	genome.wustl.edu	37	17	29527590	29527590	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	29527590	29527590	C	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	+1	known	nonsense	c.1039	p.Q347*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	56	0	0.00	50	12	19.35	-	-	-
NPAS2	0	genome.wustl.edu	37	2	101437561	101437561	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	101437561	101437561	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	+1	known	missense	c.73	p.E25K	0.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	34	0	0.00	54	6	10.00	-	-	-
NPAS2	0	genome.wustl.edu	37	2	101437601	101437601	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	101437601	101437601	C	G	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	+1	known	missense	c.113	p.T38S	0.011	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	28	0	0.00	58	10	14.71	-	-	-
OLFML3	0	genome.wustl.edu	37	1	114523105	114523105	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	114523105	114523105	G	A	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	+1	known	missense	c.266	p.R89H	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	31	0	0.00	37	9	19.57	-	-	-
OPA1	0	genome.wustl.edu	37	3	193386239	193386239	+	Silent	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	193386239	193386239	C	T	SNP	OPA1	ENST00000429164	human	ensembl	69_37n	+1	putative	silent	c.222	p.P74	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	OPA1	HGNC	ENSG00000198836	47	0	0.00	70	10	12.50	-	-	-
OVOL2	0	genome.wustl.edu	37	20	18005113	18005113	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	18005113	18005113	C	T	SNP	OVOL2	ENST00000483661	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OVOL2	HGNC	ENSG00000125850	13	0	0.00	12	5	29.41	-	-	-
PCLO	0	genome.wustl.edu	37	7	82578885	82578885	+	Silent	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	82578885	82578885	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.11019	p.K3673	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	40	0	0.00	25	8	24.24	-	-	-
PGAM1P5	0	genome.wustl.edu	37	12	96067161	96067161	+	RNA	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	12	96067161	96067161	G	T	SNP	PGAM1P5	ENST00000552554	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.345	-	-	-	no_errors	PGAM1P5	HGNC	ENSG00000257150	31	0	0.00	25	6	18.75	-	-	-
PI16	0	genome.wustl.edu	37	6	36929296	36929296	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	36929296	36929296	G	A	SNP	PI16	ENST00000373674	human	ensembl	69_37n	+1	known	missense	c.463	p.E155K	0.009	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	26	0	0.00	47	11	18.97	-	-	-
PIK3C2G	0	genome.wustl.edu	37	12	18435399	18435401	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	12	18435399	18435401	CCC	-	DEL	PIK3C2G	ENST00000538779	human	ensembl	69_37n	+1	known	in_frame_del	c.384_386	p.P129in_frame_del	0.001:0.000:0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	33	0	0.00	48	7	12.73	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178922324	178922324	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	178922324	178922324	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1093	p.E365K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	42	0	0.00	64	10	13.51	-	-	-
PRIC285	0	genome.wustl.edu	37	20	62202632	62202632	+	RNA	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	62202632	62202632	A	G	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	29	0	0.00	37	7	15.91	-	-	-
PRSS3P3	0	genome.wustl.edu	37	7	141988676	141988676	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	141988676	141988676	C	T	SNP	PRSS3P3	ENST00000463748	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	PRSS3P3	HGNC	ENSG00000242115	36	0	0.00	51	6	10.53	-	-	-
PTPN14	0	genome.wustl.edu	37	1	214705676	214705676	+	RNA	SNP	A	A	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	214705676	214705676	A	C	SNP	PTPN14	ENST00000491277	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.344	-	-	-	no_errors	PTPN14	HGNC	ENSG00000152104	23	0	0.00	34	5	12.82	-	-	-
PTPN21	0	genome.wustl.edu	37	14	89016855	89016855	+	RNA	SNP	G	G	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	89016855	89016855	G	T	SNP	PTPN21	ENST00000554628	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPN21	HGNC	ENSG00000070778	15	0	0.00	28	8	22.22	-	-	-
RAB13	0	genome.wustl.edu	37	1	153954778	153954779	+	RNA	INS	-	-	AC			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	153954778	153954779	-	AC	INS	RAB13	ENST00000462680	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545	18	0	0.00	34	6	15.00	-	-	-
RAI1	0	genome.wustl.edu	37	17	17698429	17698429	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	17698429	17698429	A	G	SNP	RAI1	ENST00000353383	human	ensembl	69_37n	+1	known	missense	c.2167	p.T723A	0.001	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	33	0	0.00	34	4	10.53	-	-	-
RFX8	0	genome.wustl.edu	37	2	102067083	102067083	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	102067083	102067083	T	C	SNP	RFX8	ENST00000376826	human	ensembl	69_37n	-1	known	missense	c.320	p.Y107C	0.998	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX8	HGNC	ENSG00000196460	26	0	0.00	45	6	11.76	-	-	-
RHOA	0	genome.wustl.edu	37	3	49413010	49413010	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	49413010	49413010	G	A	SNP	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	missense	c.13	p.R5W	0.997	tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	24	0	0.00	41	12	22.64	-	-	-
RNA5SP22	0	genome.wustl.edu	37	1	78560583	78560583	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	78560583	78560583	G	A	SNP	RNA5SP22	ENST00000365393	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.496	-	-	-	no_errors	RNA5SP22	HGNC	ENSG00000202263	28	0	0.00	31	4	11.11	-	-	-
RNF44	0	genome.wustl.edu	37	5	175956177	175956177	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	5	175956177	175956177	G	A	SNP	RNF44	ENST00000506378	human	ensembl	69_37n	-1	putative	missense	c.611	p.P204L	0.000	smart_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNF44	HGNC	ENSG00000146083	20	0	0.00	33	6	15.00	-	-	-
RP11-165H20.1	0	genome.wustl.edu	37	1	111826007	111826007	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	111826007	111826007	C	T	SNP	RP11-165H20.1	ENST00000369743	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.913	-	-	-	no_errors	RP11-165H20.1	Clone_based_vega_gene	ENSG00000203878	33	0	0.00	28	4	12.50	-	-	-
RPL13AP3	0	genome.wustl.edu	37	14	56232970	56232970	+	RNA	SNP	T	T	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	56232970	56232970	T	C	SNP	RPL13AP3	ENST00000494676	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL13AP3	HGNC	ENSG00000177350	23	0	0.00	29	10	25.64	-	-	-
RPL13AP3	0	genome.wustl.edu	37	14	56233260	56233260	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	56233260	56233260	C	T	SNP	RPL13AP3	ENST00000494676	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL13AP3	HGNC	ENSG00000177350	29	0	0.00	49	6	10.91	-	-	-
SCN9A	0	genome.wustl.edu	37	2	167085365	167085365	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	167085365	167085365	A	G	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.4045	p.Y1349H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	35	0	0.00	40	7	14.89	-	-	-
SLC24A4	0	genome.wustl.edu	37	14	92959228	92959228	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	92959228	92959228	G	A	SNP	SLC24A4	ENST00000525557	human	ensembl	69_37n	+1	putative	missense	c.1370	p.R457K	0.000	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC24A4	HGNC	ENSG00000140090	33	0	0.00	31	4	11.43	-	-	-
SMG7	0	genome.wustl.edu	37	1	183511476	183511476	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	183511476	183511476	G	A	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	+1	known	missense	c.1681	p.G561R	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	14	0	0.00	19	8	29.63	-	-	-
SMPD4P1	0	genome.wustl.edu	37	22	20977077	20977077	+	RNA	SNP	C	C	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	20977077	20977077	C	A	SNP	SMPD4P1	ENST00000443839	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SMPD4P1	HGNC	ENSG00000223553	30	0	0.00	35	5	12.50	-	-	-
STK3	0	genome.wustl.edu	37	8	99895940	99895940	+	Silent	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	8	99895940	99895940	G	A	SNP	STK3	ENST00000523601	human	ensembl	69_37n	-1	putative	silent	c.45	p.N15	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK3	HGNC	ENSG00000104375	22	0	0.00	27	4	12.90	-	-	-
STPG1	0	genome.wustl.edu	37	1	24684116	24684116	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	24684116	24684116	G	A	SNP	STPG1	ENST00000468303	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STPG1	HGNC	ENSG00000001460	23	0	0.00	28	4	12.50	-	-	-
TBCD	0	genome.wustl.edu	37	17	80895745	80895745	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	80895745	80895745	T	C	SNP	TBCD	ENST00000539345	human	ensembl	69_37n	+1	novel	missense	c.3305	p.V1102A	0.001	NULL	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	45	0	0.00	51	7	12.07	-	-	-
TCEANC	0	genome.wustl.edu	37	X	13682577	13682577	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	13682577	13682577	G	A	SNP	TCEANC	ENST00000490617	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TCEANC	HGNC	ENSG00000176896	44	0	0.00	75	10	11.63	-	-	-
TLR1	0	genome.wustl.edu	37	4	38798935	38798935	+	Silent	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	4	38798935	38798935	C	T	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	silent	c.1518	p.S506	0.002	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	57	0	0.00	93	12	11.32	-	-	-
TRIL	0	genome.wustl.edu	37	7	28997765	28997765	+	RNA	SNP	C	C	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	28997765	28997765	C	G	SNP	TRIL	ENST00000322982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734	33	0	0.00	58	8	12.12	-	-	-
TRIM34	0	genome.wustl.edu	37	11	5655085	5655085	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	5655085	5655085	G	A	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	+1	known	missense	c.1537	p.E513K	0.987	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	27	0	0.00	27	4	12.90	-	-	-
TUBA3FP	0	genome.wustl.edu	37	22	21363306	21363306	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	21363306	21363306	G	A	SNP	TUBA3FP	ENST00000292748	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBA3FP	HGNC	ENSG00000161149	52	0	0.00	60	7	10.45	-	-	-
UBE2Q2P1	0	genome.wustl.edu	37	15	85113662	85113662	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	15	85113662	85113662	C	T	SNP	UBE2Q2P1	ENST00000339094	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	UBE2Q2P1	HGNC	ENSG00000189136	8	0	0.00	9	12	57.14	-	-	-
UGP2	0	genome.wustl.edu	37	2	64084005	64084005	+	RNA	SNP	G	G	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	64084005	64084005	G	A	SNP	UGP2	ENST00000495020	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UGP2	HGNC	ENSG00000169764	38	0	0.00	66	11	14.29	-	-	-
VNN3	0	genome.wustl.edu	37	6	133052666	133052666	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	133052666	133052666	C	T	SNP	VNN3	ENST00000544102	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VNN3	HGNC	ENSG00000093134	33	0	0.00	32	10	23.81	-	-	-
XRRA1	0	genome.wustl.edu	37	11	74660143	74660143	+	RNA	SNP	G	G	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	74660143	74660143	G	C	SNP	XRRA1	ENST00000524430	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	XRRA1	HGNC	ENSG00000166435	14	0	0.00	25	5	16.67	-	-	-
ZNF440	0	genome.wustl.edu	37	19	11941221	11941221	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	19	11941221	11941221	T	A	SNP	ZNF440	ENST00000304060	human	ensembl	69_37n	+1	known	missense	c.127	p.L43I	0.116	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295	70	0	0.00	79	12	13.04	-	-	-
ZNF518A	0	genome.wustl.edu	37	10	97922576	97922576	+	RNA	SNP	A	A	G			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	10	97922576	97922576	A	G	SNP	ZNF518A	ENST00000534948	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	26	0	0.00	34	4	10.53	-	-	-
ZNRD1-AS1	0	genome.wustl.edu	37	6	30025285	30025285	+	RNA	SNP	C	C	T			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	30025285	30025285	C	T	SNP	ZNRD1-AS1	ENST00000421692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ZNRD1-AS1	HGNC	ENSG00000204623	42	0	0.00	51	6	10.53	-	-	-
ZRSR1	0	genome.wustl.edu	37	5	112228765	112228765	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	5	112228765	112228765	C	A	SNP	ZRSR1	ENST00000391338	human	ensembl	69_37n	+1	known	missense	c.1429	p.Q477K	0.280	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR1	HGNC	ENSG00000212643	25	0	0.00	42	6	12.50	-	-	-
ZSCAN5C	0	genome.wustl.edu	37	19	56719405	56719405	+	Missense_Mutation	SNP	A	A	C			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	19	56719405	56719405	A	C	SNP	ZSCAN5C	ENST00000376267	human	ensembl	69_37n	+1	known	missense	c.591	p.E197D	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5C	HGNC	ENSG00000204532	46	0	0.00	72	14	16.28	-	-	-
