Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTR5	0	genome.wustl.edu	37	20	37400366	37400366	+	Silent	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	20	37400366	37400366	C	T	SNP	ACTR5	ENST00000243903	human	ensembl	69_37n	+1	known	silent	c.1731	p.I577	1.000	NULL	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR5	HGNC	ENSG00000101442	89	0	0.00	39	22	36.07	-	-	-
ATXN3L	0	genome.wustl.edu	37	X	13337899	13337899	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	X	13337899	13337899	C	T	SNP	ATXN3L	ENST00000380622	human	ensembl	69_37n	-1	known	missense	c.155	p.G52E	0.999	pfam_Josephin,pfscan_Josephin,prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3L	HGNC	ENSG00000123594	67	0	0.00	30	27	47.37	-	-	-
C11orf95	0	genome.wustl.edu	37	11	63533672	63533672	+	RNA	SNP	C	C	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	11	63533672	63533672	C	A	SNP	C11orf95	ENST00000433688	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C11orf95	HGNC	ENSG00000188070	63	0	0.00	33	14	29.79	-	-	-
C20orf27	0	genome.wustl.edu	37	20	3736174	3736174	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	20	3736174	3736174	G	A	SNP	C20orf27	ENST00000399683	human	ensembl	69_37n	-1	known	missense	c.224	p.A75V	0.038	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C20orf27	HGNC	ENSG00000101220	80	0	0.00	38	12	24.00	-	-	-
CACNA1G	0	genome.wustl.edu	37	17	48701409	48701409	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	48701409	48701409	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	+1	known	missense	c.6202	p.G2068S	0.002	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	72	0	0.00	25	15	37.50	-	-	-
CACNA2D3	0	genome.wustl.edu	37	3	54604012	54604012	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	3	54604012	54604012	G	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	+1	known	missense	c.769	p.V257L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	42	0	0.00	34	4	10.53	-	-	-
CDH23	0	genome.wustl.edu	37	10	73545397	73545397	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	10	73545397	73545397	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	+1	known	missense	c.5731	p.V1911I	0.655	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	37	0	0.00	19	7	26.92	-	-	-
CFHR3	0	genome.wustl.edu	37	1	196748946	196748946	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	196748946	196748946	T	-	DEL	CFHR3	ENST00000367425	human	ensembl	69_37n	+1	known	frame_shift_del	c.273	p.L92fs	0.002	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785	47	0	0.00	60	8	11.76	-	-	-
COPA	0	genome.wustl.edu	37	1	160280027	160280027	+	Silent	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	160280027	160280027	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.1098	p.F366	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	43	0	0.00	39	14	26.42	-	-	-
COPA	0	genome.wustl.edu	37	1	160280035	160280035	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	160280035	160280035	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.1090	p.P364S	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	40	0	0.00	40	13	24.53	-	-	-
DOM3Z	0	genome.wustl.edu	37	6	31938577	31938577	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	6	31938577	31938577	G	A	SNP	DOM3Z	ENST00000495340	human	ensembl	69_37n	-1	novel	missense	c.38	p.P13L	0.062	NULL	pfam_RAI1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOM3Z	HGNC	ENSG00000204348	38	0	0.00	30	8	21.05	-	-	-
ERCC8	0	genome.wustl.edu	37	5	60170337	60170337	+	RNA	SNP	A	A	G			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	5	60170337	60170337	A	G	SNP	ERCC8	ENST00000462279	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERCC8	HGNC	ENSG00000049167	59	0	0.00	29	4	12.12	-	-	-
FAM195B	0	genome.wustl.edu	37	17	79781072	79781072	+	RNA	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	79781072	79781072	C	T	SNP	FAM195B	ENST00000575090	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.025	-	-	-	no_errors	FAM195B	HGNC	ENSG00000225663	106	1	0.92	30	18	37.50	-	-	-
LCT	0	genome.wustl.edu	37	2	136570331	136570331	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	2	136570331	136570331	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.1903	p.V635I	0.722	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	117	0	0.00	52	38	42.22	-	-	-
LGI1	0	genome.wustl.edu	37	10	95557106	95557106	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	10	95557106	95557106	G	A	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	+1	known	missense	c.1220	p.R407H	1.000	pfam_EPTP,superfamily_WD40_repeat_dom	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	27	0	0.00	12	11	47.83	-	-	-
MUC19	0	genome.wustl.edu	37	12	40805978	40805978	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	12	40805978	40805978	C	A	SNP	MUC19	ENST00000425730	human	ensembl	69_37n	+1	novel	missense	c.250	p.P84T	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_VWC_out,smart_Unchr_dom_Cys-rich	-	no_stop_codon:bad_bp_length_for_coding_region	MUC19	HGNC	ENSG00000205592	48	0	0.00	23	6	20.69	-	-	-
NASP	0	genome.wustl.edu	37	1	46066130	46066130	+	Splice_Site	SNP	G	G	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	46066130	46066130	G	T	SNP	NASP	ENST00000402363	human	ensembl	69_37n	+1	known	splice_site	c.113+1	e2+1	0.896	-	-	-	no_errors	NASP	HGNC	ENSG00000132780	50	0	0.00	28	4	12.50	-	-	-
NAV1	0	genome.wustl.edu	37	1	201751394	201751394	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	201751394	201751394	G	A	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	+1	known	missense	c.1754	p.R585H	0.994	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	99	0	0.00	84	11	11.46	-	-	-
PHF8	0	genome.wustl.edu	37	X	54069225	54069225	+	Silent	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	X	54069225	54069225	C	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	silent	c.45	p.P15	0.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	142	0	0.00	102	31	23.13	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	20	0	0.00	19	16	45.71	-	-	-
PLCH1	0	genome.wustl.edu	37	3	155311894	155311894	+	Silent	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	3	155311894	155311894	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	silent	c.270	p.D90	0.982	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	94	0	0.00	33	25	43.10	-	-	-
POFUT2	0	genome.wustl.edu	37	21	46687385	46687385	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	21	46687385	46687385	G	T	SNP	POFUT2	ENST00000331343	human	ensembl	69_37n	-1	known	missense	c.1256	p.T419N	0.003	NULL	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	45	0	0.00	35	4	10.26	-	-	-
PTEN	0	genome.wustl.edu	37	10	89692868	89692868	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	10	89692868	89692868	C	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	frame_shift_del	c.352	p.H118fs	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	132	0	0.00	73	10	11.11	-	-	-
RABEP1	0	genome.wustl.edu	37	17	5266230	5266232	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	5266230	5266232	TGG	-	DEL	RABEP1	ENST00000262477	human	ensembl	69_37n	+1	known	in_frame_del	c.1587_1589	p.G530in_frame_del	1.000:1.000:1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	89	0	0.00	52	16	23.19	-	-	-
ROCK1P1	0	genome.wustl.edu	37	18	117294	117294	+	RNA	SNP	T	T	C			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	18	117294	117294	T	C	SNP	ROCK1P1	ENST00000576266	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	ROCK1P1	HGNC	ENSG00000263006	53	0	0.00	42	14	25.00	-	-	-
SF1	0	genome.wustl.edu	37	11	64533497	64533497	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	11	64533497	64533497	G	A	SNP	SF1	ENST00000486867	human	ensembl	69_37n	-1	putative	missense	c.871	p.R291W	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SF1	HGNC	ENSG00000168066	18	0	0.00	6	6	50.00	-	-	-
SLC2A3	0	genome.wustl.edu	37	12	8074173	8074173	+	Silent	SNP	A	A	G			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	12	8074173	8074173	A	G	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	silent	c.1327	p.L443	0.998	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	47	0	0.00	42	6	12.50	-	-	-
SPEG	0	genome.wustl.edu	37	2	220353572	220353572	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	2	220353572	220353572	C	T	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	+1	novel	missense	c.8099	p.P2700L	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	144	0	0.00	48	42	46.67	-	-	-
UNC79	0	genome.wustl.edu	37	14	93962758	93962758	+	Silent	SNP	G	G	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	14	93962758	93962758	G	T	SNP	UNC79	ENST00000553484	human	ensembl	69_37n	+1	known	silent	c.714	p.V238	0.987	NULL	superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	33	0	0.00	23	3	11.54	-	-	-
USF1	0	genome.wustl.edu	37	1	161009775	161009775	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	161009775	161009775	G	C	SNP	USF1	ENST00000368020	human	ensembl	69_37n	-1	known	missense	c.868	p.L290V	0.997	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	USF1	HGNC	ENSG00000158773	81	0	0.00	70	14	16.67	-	-	-
USP32	0	genome.wustl.edu	37	17	58289418	58289418	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	58289418	58289418	T	C	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.2146	p.I716V	1.000	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	86	0	0.00	48	26	35.14	-	-	-
USP34	0	genome.wustl.edu	37	2	61472411	61472411	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	2	61472411	61472411	A	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.6561	p.N2187K	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	56	0	0.00	43	9	17.31	-	-	-
VTCN1	0	genome.wustl.edu	37	1	117695947	117695947	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	117695947	117695947	C	T	SNP	VTCN1	ENST00000359008	human	ensembl	69_37n	-1	known	missense	c.499	p.E167K	0.993	pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VTCN1	HGNC	ENSG00000134258	57	0	0.00	22	12	35.29	-	-	-
ZFP3	0	genome.wustl.edu	37	17	4995115	4995115	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	4995115	4995115	G	T	SNP	ZFP3	ENST00000318833	human	ensembl	69_37n	+1	known	nonsense	c.316	p.G106*	0.336	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787	55	0	0.00	29	4	12.12	-	-	-
ZNF229	0	genome.wustl.edu	37	19	44933891	44933891	+	Silent	SNP	T	T	C			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	19	44933891	44933891	T	C	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	silent	c.1065	p.G355	0.979	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	81	0	0.00	25	14	35.90	-	-	-
