Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BARHL1	0	genome.wustl.edu	37	9	135458232	135458232	+	Silent	SNP	C	C	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	9	135458232	135458232	C	T	SNP	BARHL1	ENST00000263610	human	ensembl	69_37n	+1	known	silent	c.48	p.R16	0.879	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	BARHL1	HGNC	ENSG00000125492	52	0	0.00	16	6	27.27	-	-	-
CD300E	0	genome.wustl.edu	37	17	72619828	72619828	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	17	72619828	72619828	G	A	SNP	CD300E	ENST00000426295	human	ensembl	69_37n	-1	known	missense	c.56	p.P19L	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300E	HGNC	ENSG00000186407	196	0	0.00	201	77	27.70	-	-	-
CDC42BPA	0	genome.wustl.edu	37	1	227288919	227288919	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	227288919	227288919	G	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.2023	p.P675S	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	207	0	0.00	197	163	45.28	-	-	-
COL12A1	0	genome.wustl.edu	37	6	75884984	75884984	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	6	75884984	75884984	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2480	p.T827M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	212	0	0.00	157	66	29.60	-	-	-
CUL4B	0	genome.wustl.edu	37	X	119678367	119678367	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	119678367	119678367	C	T	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.1106	p.R369Q	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	229	0	0.00	296	54	15.43	-	-	-
DNPEP	0	genome.wustl.edu	37	2	220249154	220249154	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	2	220249154	220249154	A	-	DEL	DNPEP	ENST00000273075	human	ensembl	69_37n	-1	known	frame_shift_del	c.786	p.A263fs	0.803	pfam_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992	35	0	0.00	11	2	15.38	-	-	-
FSIP2	0	genome.wustl.edu	37	2	186673142	186673142	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	2	186673142	186673142	A	-	DEL	FSIP2	ENST00000343098	human	ensembl	69_37n	+1	known	frame_shift_del	c.19376	p.N6461fs	0.001	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	150	0	0.00	112	41	26.62	-	-	-
GJB3	0	genome.wustl.edu	37	1	35251060	35251060	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	35251060	35251060	G	A	SNP	GJB3	ENST00000373362	human	ensembl	69_37n	+1	known	missense	c.697	p.A233T	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910	31	0	0.00	13	9	32.14	-	-	-
HEY1	0	genome.wustl.edu	37	8	80677554	80677554	+	Missense_Mutation	SNP	A	A	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	8	80677554	80677554	A	T	SNP	HEY1	ENST00000337919	human	ensembl	69_37n	-1	known	missense	c.796	p.S266T	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEY1	HGNC	ENSG00000164683	12	0	0.00	2	10	83.33	-	-	-
HOXA5	0	genome.wustl.edu	37	7	27182916	27182916	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	7	27182916	27182916	G	A	SNP	HOXA5	ENST00000222726	human	ensembl	69_37n	-1	known	missense	c.311	p.S104F	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004	15	0	0.00	7	4	36.36	-	-	-
HYAL2	0	genome.wustl.edu	37	3	50355675	50355675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	3	50355675	50355675	T	-	DEL	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	frame_shift_del	c.1307	p.E436fs	0.903	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	29	0	0.00	6	3	33.33	-	-	-
HYAL2	0	genome.wustl.edu	37	3	50355680	50355681	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	3	50355680	50355681	-	TT	INS	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1302_1301	p.S434fs	0.905:0.978	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	28	0	0.00	6	3	33.33	-	-	-
IGHV4-61	0	genome.wustl.edu	37	14	107095423	107095423	+	Silent	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	14	107095423	107095423	G	A	SNP	IGHV4-61	ENST00000390630	human	ensembl	69_37n	-1	known	silent	c.57	p.S19	0.987	pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGHV4-61	HGNC	ENSG00000211970	87	0	0.00	46	8	14.81	-	-	-
IRF4	0	genome.wustl.edu	37	6	397138	397138	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	6	397138	397138	G	A	SNP	IRF4	ENST00000380956	human	ensembl	69_37n	+1	known	missense	c.523	p.D175N	1.000	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265	124	0	0.00	45	29	39.19	-	-	-
KLHL15	0	genome.wustl.edu	37	X	24024161	24024162	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	24024161	24024162	-	T	INS	KLHL15	ENST00000328046	human	ensembl	69_37n	-1	known	frame_shift_ins	c.650_649	p.T217fs	1.000:1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010	919	0	0.00	832	304	26.76	-	-	-
KRT2	0	genome.wustl.edu	37	12	53042056	53042056	+	Silent	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	53042056	53042056	G	A	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	silent	c.1023	p.R341	0.001	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	340	0	0.00	259	110	29.81	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178024	56178027	+	Frame_Shift_Del	DEL	AGAT	AGAT	-			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	AGAT	AGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	5	56178024	56178027	AGAT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.2997_3000	p.D1000fs	1.000:1.000:1.000:0.958	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	404	0	0.00	185	72	27.48	-	-	-
MDM1	0	genome.wustl.edu	37	12	68719294	68719294	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	68719294	68719294	C	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	missense	c.560	p.R187I	1.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	544	1	0.18	365	167	31.39	-	-	-
NCDN	0	genome.wustl.edu	37	1	36029024	36029024	+	Missense_Mutation	SNP	T	T	G			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	36029024	36029024	T	G	SNP	NCDN	ENST00000356090	human	ensembl	69_37n	+1	known	missense	c.1607	p.I536S	1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129	54	0	0.00	24	11	31.43	-	-	-
OASL	0	genome.wustl.edu	37	12	121458644	121458645	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	121458644	121458645	GT	-	DEL	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	frame_shift_del	c.1265_1264	p.T422fs	0.000:0.000	smart_Ubiquitin	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	234	0	0.00	278	194	41.10	-	-	-
OCRL	0	genome.wustl.edu	37	X	128692912	128692912	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	128692912	128692912	G	A	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	+1	known	missense	c.656	p.R219Q	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	593	0	0.00	437	174	28.48	-	-	-
OGDHL	0	genome.wustl.edu	37	10	50946283	50946283	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	10	50946283	50946283	G	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.2345	p.P782H	0.994	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	84	0	0.00	40	18	31.03	-	-	-
OR13G1	0	genome.wustl.edu	37	1	247835571	247835571	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	247835571	247835571	C	T	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	missense	c.773	p.R258H	0.823	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	275	0	0.00	126	57	31.15	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	267	1	0.37	230	323	58.41	-	-	-
PNCK	0	genome.wustl.edu	37	X	152936626	152936627	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	152936626	152936627	-	G	INS	PNCK	ENST00000447676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.883_882	p.F294fs	1.000:0.876	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PNCK	HGNC	ENSG00000130822	58	0	0.00	36	4	10.00	-	-	-
SEPT12	0	genome.wustl.edu	37	16	4829718	4829718	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	16	4829718	4829718	G	A	SNP	SEPT12	ENST00000268231	human	ensembl	69_37n	-1	known	missense	c.796	p.R266W	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623	75	0	0.00	119	25	17.36	-	-	-
SIPA1L1	0	genome.wustl.edu	37	14	72055691	72055691	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	14	72055691	72055691	G	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	+1	known	missense	c.1102	p.V368L	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	538	0	0.00	234	97	29.31	-	-	-
SLC12A9	0	genome.wustl.edu	37	7	100457800	100457800	+	Silent	SNP	G	G	C			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	7	100457800	100457800	G	C	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	+1	known	silent	c.1164	p.V388	0.882	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	107	0	0.00	30	36	54.55	-	-	-
SLFN12	0	genome.wustl.edu	37	17	33749142	33749142	+	Silent	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	17	33749142	33749142	G	A	SNP	SLFN12	ENST00000304905	human	ensembl	69_37n	-1	known	silent	c.906	p.V302	0.091	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123	309	0	0.00	379	187	32.92	-	-	-
SYDE2	0	genome.wustl.edu	37	1	85656406	85656406	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	85656406	85656406	T	C	SNP	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	missense	c.775	p.M259V	0.065	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	353	0	0.00	354	168	32.12	-	-	-
TCN1	0	genome.wustl.edu	37	11	59629105	59629105	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	11	59629105	59629105	C	T	SNP	TCN1	ENST00000257264	human	ensembl	69_37n	-1	known	missense	c.451	p.V151I	0.002	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827	344	0	0.00	211	90	29.90	-	-	-
TENC1	0	genome.wustl.edu	37	12	53457540	53457540	+	Silent	SNP	C	C	T			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	53457540	53457540	C	T	SNP	TENC1	ENST00000314276	human	ensembl	69_37n	+1	known	silent	c.4134	p.F1378	0.948	pfam_PTB,smart_PTyr_interaction_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	76	0	0.00	59	11	15.71	-	-	-
TOR1AIP2	0	genome.wustl.edu	37	1	179815877	179815877	+	Missense_Mutation	SNP	T	T	G			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	179815877	179815877	T	G	SNP	TOR1AIP2	ENST00000367612	human	ensembl	69_37n	-1	known	missense	c.742	p.K248Q	0.389	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP2	HGNC	ENSG00000169905	158	1	0.62	228	53	18.86	-	-	-
TTC37	0	genome.wustl.edu	37	5	94858950	94858950	+	Silent	SNP	T	T	G			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	5	94858950	94858950	T	G	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	silent	c.1713	p.G571	0.085	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	589	2	0.34	427	171	28.60	-	-	-
WWC1	0	genome.wustl.edu	37	5	167881097	167881097	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	5	167881097	167881097	G	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	+1	known	missense	c.2650	p.A884T	0.774	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	234	0	0.00	207	221	51.64	-	-	-
ZNF618	0	genome.wustl.edu	37	9	116764297	116764297	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	9	116764297	116764297	G	A	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	+1	known	missense	c.455	p.C152Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	86	0	0.00	43	14	24.56	-	-	-
