Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AACS	0	genome.wustl.edu	37	12	125603260	125603261	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	12	125603260	125603261	CC	-	DEL	AACS	ENST00000316519	human	ensembl	69_37n	+1	known	frame_shift_del	c.1070_1071	p.L359fs	1.000:0.999	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	73	0	0.00	18	2	10.00	-	-	-
AKAP4	0	genome.wustl.edu	37	X	49957345	49957345	+	Silent	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	49957345	49957345	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.2019	p.A673	0.012	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	172	0	0.00	121	89	42.18	-	-	-
ARSE	0	genome.wustl.edu	37	X	2853148	2853148	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	2853148	2853148	G	A	SNP	ARSE	ENST00000545496	human	ensembl	69_37n	-1	known	missense	c.1570	p.P524S	0.820	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	137	0	0.00	68	58	46.03	-	-	-
BPHL	0	genome.wustl.edu	37	6	3140669	3140669	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	6	3140669	3140669	T	A	SNP	BPHL	ENST00000423798	human	ensembl	69_37n	+1	putative	nonsense	c.11	p.L4*	0.793	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BPHL	HGNC	ENSG00000137274	53	0	0.00	47	24	33.80	-	-	-
BST2	0	genome.wustl.edu	37	19	17516273	17516273	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	17516273	17516273	C	G	SNP	BST2	ENST00000252593	human	ensembl	69_37n	-1	known	missense	c.112	p.G38R	0.000	NULL	superfamily_Prefoldin	-	no_errors	BST2	HGNC	ENSG00000130303	153	0	0.00	84	45	34.88	-	-	-
CIAO1	0	genome.wustl.edu	37	2	96933656	96933657	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	96933656	96933657	-	G	INS	CIAO1	ENST00000488633	human	ensembl	69_37n	+1	known	frame_shift_ins	c.483_484	p.Q161fs	0.535:0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	31	0	0.00	21	12	36.36	-	-	-
CIAO1	0	genome.wustl.edu	37	2	96933659	96933660	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	96933659	96933660	-	CC	INS	CIAO1	ENST00000488633	human	ensembl	69_37n	+1	known	frame_shift_ins	c.486_487	p.E162fs	0.999:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	29	0	0.00	20	12	37.50	-	-	-
CORO6	0	genome.wustl.edu	37	17	27948434	27948434	+	Silent	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	17	27948434	27948434	G	A	SNP	CORO6	ENST00000345068	human	ensembl	69_37n	-1	known	silent	c.6	p.S2	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549	55	0	0.00	18	8	30.77	-	-	-
CREB3L3	0	genome.wustl.edu	37	19	4171690	4171690	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	4171690	4171690	C	T	SNP	CREB3L3	ENST00000252587	human	ensembl	69_37n	+1	known	missense	c.776	p.A259V	0.427	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd	-	no_errors	CREB3L3	HGNC	ENSG00000060566	19	0	0.00	22	7	24.14	-	-	-
DCLK2	0	genome.wustl.edu	37	4	151153908	151153908	+	Silent	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	4	151153908	151153908	C	T	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	+1	known	silent	c.1545	p.N515	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	124	0	0.00	87	39	30.95	-	-	-
DLGAP2	0	genome.wustl.edu	37	8	1497608	1497608	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	8	1497608	1497608	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	69_37n	+1	known	missense	c.749	p.A250V	0.006	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	40	0	0.00	34	12	26.09	-	-	-
DNASE2	0	genome.wustl.edu	37	19	12991929	12991929	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	12991929	12991929	C	G	SNP	DNASE2	ENST00000222219	human	ensembl	69_37n	-1	known	missense	c.124	p.G42R	0.014	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2	HGNC	ENSG00000105612	62	0	0.00	24	24	50.00	-	-	-
DOC2A	0	genome.wustl.edu	37	16	30018123	30018123	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	16	30018123	30018123	C	T	SNP	DOC2A	ENST00000564357	human	ensembl	69_37n	-1	novel	missense	c.370	p.G124R	0.008	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOC2A	HGNC	ENSG00000149927	89	0	0.00	53	32	37.65	-	-	-
DPPA2	0	genome.wustl.edu	37	3	109031471	109031471	+	Silent	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	109031471	109031471	G	A	SNP	DPPA2	ENST00000478945	human	ensembl	69_37n	-1	known	silent	c.102	p.D34	0.001	NULL	pfscan_SAP_DNA-bd	-	no_errors	DPPA2	HGNC	ENSG00000163530	240	0	0.00	107	81	43.09	-	-	-
DUOX2	0	genome.wustl.edu	37	15	45396252	45396252	+	Splice_Site	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	15	45396252	45396252	C	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	splice_site	c.2561-1	e19-1	1.000	-	-	-	no_errors	DUOX2	HGNC	ENSG00000140279	116	1	0.85	79	24	23.30	-	-	-
ELAVL1	0	genome.wustl.edu	37	19	8032461	8032461	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	8032461	8032461	G	A	SNP	ELAVL1	ENST00000351593	human	ensembl	69_37n	-1	known	missense	c.725	p.A242V	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	41	0	0.00	31	34	51.52	-	-	-
GIPC3	0	genome.wustl.edu	37	19	3589526	3589527	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	3589526	3589527	-	G	INS	GIPC3	ENST00000322315	human	ensembl	69_37n	+1	known	frame_shift_ins	c.678_679	p.A228fs	0.411:0.803	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855	45	0	0.00	44	5	10.20	-	-	-
GPATCH3	0	genome.wustl.edu	37	1	27219895	27219895	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	27219895	27219895	C	A	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.1096	p.V366L	0.867	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	124	0	0.00	44	16	26.67	-	-	-
GPR162	0	genome.wustl.edu	37	12	6934684	6934685	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	12	6934684	6934685	-	C	INS	GPR162	ENST00000311268	human	ensembl	69_37n	+1	known	frame_shift_ins	c.903_904	p.W303fs	0.313:0.996	pfam_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_162,prints_GPCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510	32	0	0.00	20	3	13.04	-	-	-
HOXA1	0	genome.wustl.edu	37	7	27134949	27134949	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	27134949	27134949	C	T	SNP	HOXA1	ENST00000343060	human	ensembl	69_37n	-1	known	missense	c.583	p.A195T	0.610	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA1	HGNC	ENSG00000105991	94	0	0.00	76	24	24.00	-	-	-
KALRN	0	genome.wustl.edu	37	3	124380761	124380761	+	Silent	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	124380761	124380761	C	T	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	+1	known	silent	c.6328	p.L2110	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	136	0	0.00	105	13	11.02	-	-	-
KCTD16	0	genome.wustl.edu	37	5	143853657	143853657	+	Silent	SNP	T	T	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	5	143853657	143853657	T	C	SNP	KCTD16	ENST00000507359	human	ensembl	69_37n	+1	known	silent	c.1267	p.L423	0.927	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775	27	0	0.00	30	15	33.33	-	-	-
MARC1	0	genome.wustl.edu	37	1	220986673	220986673	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	220986673	220986673	A	T	SNP	MARC1	ENST00000407981	human	ensembl	69_37n	+1	putative	nonsense	c.703	p.K235*	0.378	pfam_MoCF_Sase_C,superfamily_Pyrv_Knase-like_insert_dom	pfam_MoCF_Sase_C,pfam_MOSC_N,superfamily_Pyrv_Knase-like_insert_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MARC1	HGNC	ENSG00000186205	140	0	0.00	175	51	22.47	-	-	-
MEOX2	0	genome.wustl.edu	37	7	15666489	15666489	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	15666489	15666489	C	T	SNP	MEOX2	ENST00000262041	human	ensembl	69_37n	-1	known	missense	c.572	p.R191K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511	365	0	0.00	166	163	49.54	-	-	-
MRPL24	0	genome.wustl.edu	37	1	156708153	156708153	+	Silent	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	156708153	156708153	G	A	SNP	MRPL24	ENST00000361531	human	ensembl	69_37n	-1	known	silent	c.261	p.V87	0.013	pfam_KOW,superfamily_Translation_prot_SH3-like,tigrfam_Ribosomal_L24	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	-	no_errors	MRPL24	HGNC	ENSG00000143314	227	0	0.00	234	79	25.16	-	-	-
MUC16	0	genome.wustl.edu	37	19	9061379	9061379	+	Silent	SNP	T	T	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	9061379	9061379	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.26067	p.T8689	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	196	0	0.00	256	150	36.95	-	-	-
MYO7B	0	genome.wustl.edu	37	2	128382968	128382968	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	128382968	128382968	C	-	DEL	MYO7B	ENST00000389524	human	ensembl	69_37n	+1	known	frame_shift_del	c.3995	p.R1333fs	1.000	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	10	0	0.00	4	2	33.33	-	-	-
NLRP8	0	genome.wustl.edu	37	19	56466066	56466066	+	Silent	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	56466066	56466066	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	+1	known	silent	c.642	p.I214	0.001	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	82	0	0.00	52	32	38.10	-	-	-
NOTUM	0	genome.wustl.edu	37	17	79914941	79914942	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	17	79914941	79914942	-	C	INS	NOTUM	ENST00000409678	human	ensembl	69_37n	-1	known	frame_shift_ins	c.705_704	p.T236fs	1.000:1.000	pfam_Pec_acetylest	pfam_Pec_acetylest	-	no_errors	NOTUM	HGNC	ENSG00000185269	15	0	0.00	10	3	23.08	-	-	-
OTOF	0	genome.wustl.edu	37	2	26706481	26706481	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	26706481	26706481	C	T	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.1241	p.R414H	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	26	0	0.00	14	6	30.00	-	-	-
PAX8	0	genome.wustl.edu	37	2	113993061	113993061	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	113993061	113993061	G	A	SNP	PAX8	ENST00000429538	human	ensembl	69_37n	-1	known	nonsense	c.997	p.Q333*	1.000	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX8	HGNC	ENSG00000125618	51	0	0.00	27	12	30.77	-	-	-
PCNT	0	genome.wustl.edu	37	21	47819611	47819611	+	Silent	SNP	T	T	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	21	47819611	47819611	T	C	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	+1	known	silent	c.4692	p.I1564	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	75	0	0.00	39	10	20.41	-	-	-
QARS	0	genome.wustl.edu	37	3	49135886	49135886	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	49135886	49135886	C	G	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.1984	p.E662Q	1.000	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	54	0	0.00	51	9	15.00	-	-	-
RAD54L2	0	genome.wustl.edu	37	3	51664777	51664777	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	51664777	51664777	G	A	SNP	RAD54L2	ENST00000409535	human	ensembl	69_37n	+1	known	missense	c.655	p.E219K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	134	0	0.00	155	40	20.51	-	-	-
RBMXL3	0	genome.wustl.edu	37	X	114426666	114426666	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	114426666	114426666	G	A	SNP	RBMXL3	ENST00000424776	human	ensembl	69_37n	+1	known	missense	c.2662	p.E888K	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	65	0	0.00	15	14	48.28	-	-	-
SCN7A	0	genome.wustl.edu	37	2	167298248	167298248	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	167298248	167298248	C	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.1815	p.K605N	0.954	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	161	0	0.00	76	44	36.67	-	-	-
SLC28A3	0	genome.wustl.edu	37	9	86894959	86894959	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	9	86894959	86894959	T	C	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	missense	c.1759	p.I587V	1.000	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	112	0	0.00	59	82	58.16	-	-	-
SOGA2	0	genome.wustl.edu	37	18	8796377	8796377	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	18	8796377	8796377	C	T	SNP	SOGA2	ENST00000359865	human	ensembl	69_37n	+1	known	missense	c.2158	p.L720F	1.000	NULL	pfam_DUF3166	-	no_errors	SOGA2	HGNC	ENSG00000168502	169	0	0.00	58	63	52.07	-	-	-
TBP	0	genome.wustl.edu	37	6	170871216	170871216	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	6	170871216	170871216	C	G	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	missense	c.392	p.P131R	1.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	281	0	0.00	147	92	38.49	-	-	-
TES	0	genome.wustl.edu	37	7	115892485	115892485	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	115892485	115892485	T	C	SNP	TES	ENST00000393484	human	ensembl	69_37n	+1	putative	missense	c.392	p.M131T	0.974	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TES	HGNC	ENSG00000135269	162	0	0.00	73	63	46.32	-	-	-
TRIP12	0	genome.wustl.edu	37	2	230678717	230678717	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	230678717	230678717	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	87	0	0.00	36	21	36.84	-	-	-
TRMT1	0	genome.wustl.edu	37	19	13218608	13218608	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	13218608	13218608	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	69_37n	-1	known	missense	c.1463	p.T488M	0.998	pfam_tRNA_MeTrfase_TRM1,tigrfam_tRNA_MeTrfase_TRM1	pfam_tRNA_MeTrfase_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_tRNA_MeTrfase_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907	94	0	0.00	73	47	39.17	-	-	-
TTLL12	0	genome.wustl.edu	37	22	43569738	43569738	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	22	43569738	43569738	G	A	SNP	TTLL12	ENST00000216129	human	ensembl	69_37n	-1	known	nonsense	c.1324	p.R442*	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL12	HGNC	ENSG00000100304	40	0	0.00	16	7	30.43	-	-	-
WDR19	0	genome.wustl.edu	37	4	39247000	39247000	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	4	39247000	39247000	G	T	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	+1	known	missense	c.2657	p.G886V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	175	0	0.00	65	24	26.97	-	-	-
YIPF6	0	genome.wustl.edu	37	X	67718953	67718953	+	Silent	SNP	G	G	A			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	67718953	67718953	G	A	SNP	YIPF6	ENST00000462683	human	ensembl	69_37n	+1	known	silent	c.45	p.S15	0.030	NULL	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704	201	0	0.00	223	51	18.61	-	-	-
