Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD24	0	genome.wustl.edu	37	19	4212477	4212477	+	Silent	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	4212477	4212477	G	A	SNP	ANKRD24	ENST00000262970	human	ensembl	69_37n	+1	known	silent	c.1335	p.P445	0.017	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	368	0	0.00	290	52	15.20	-	-	-
AP4E1	0	genome.wustl.edu	37	15	51223146	51223146	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	15	51223146	51223146	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	+1	known	missense	c.847	p.L283F	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	169	0	0.00	84	30	26.32	-	-	-
ATG2B	0	genome.wustl.edu	37	14	96773188	96773188	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	14	96773188	96773188	C	T	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.4369	p.E1457K	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	139	0	0.00	137	26	15.95	-	-	-
ATP6V1B1	0	genome.wustl.edu	37	2	71170640	71170640	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	2	71170640	71170640	G	T	SNP	ATP6V1B1	ENST00000454446	human	ensembl	69_37n	+1	novel	missense	c.22	p.A8S	1.000	NULL	pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_ATPase_F1/A1-cplx_a/bsu_N	-	no_stop_codon:bad_bp_length_for_coding_region	ATP6V1B1	HGNC	ENSG00000116039	57	0	0.00	25	38	60.32	-	-	-
CFP	0	genome.wustl.edu	37	X	47485822	47485822	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	X	47485822	47485822	C	T	SNP	CFP	ENST00000247153	human	ensembl	69_37n	-1	known	missense	c.1037	p.R346H	0.467	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	179	0	0.00	121	19	13.57	-	-	-
COG5	0	genome.wustl.edu	37	7	106898812	106898812	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	7	106898812	106898812	T	C	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	missense	c.1685	p.D562G	1.000	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	369	0	0.00	142	158	52.49	-	-	-
COMP	0	genome.wustl.edu	37	19	18898318	18898318	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	18898318	18898318	C	T	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	missense	c.1117	p.D373N	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	36	0	0.00	25	12	32.43	-	-	-
CUL7	0	genome.wustl.edu	37	6	43005481	43005481	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	6	43005481	43005481	C	T	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.5294	p.R1765Q	0.931	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	158	0	0.00	114	18	13.53	-	-	-
CYB5R2	0	genome.wustl.edu	37	11	7694105	7694105	+	Silent	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	11	7694105	7694105	C	T	SNP	CYB5R2	ENST00000524608	human	ensembl	69_37n	-1	putative	silent	c.132	p.L44	0.011	NULL	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase	-	no_stop_codon:bad_bp_length_for_coding_region	CYB5R2	HGNC	ENSG00000166394	115	0	0.00	52	31	37.35	-	-	-
DMBT1	0	genome.wustl.edu	37	10	124377690	124377690	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	124377690	124377690	G	T	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	+1	known	missense	c.5049	p.W1683C	0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	304	0	0.00	170	29	14.57	-	-	-
DNAH10	0	genome.wustl.edu	37	12	124341720	124341720	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	124341720	124341720	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	+1	known	missense	c.6202	p.V2068I	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	98	0	0.00	61	29	32.22	-	-	-
DOCK1	0	genome.wustl.edu	37	10	128908590	128908590	+	Silent	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	128908590	128908590	C	T	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	+1	known	silent	c.2532	p.I844	0.991	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	178	0	0.00	76	11	12.64	-	-	-
EPS15L1	0	genome.wustl.edu	37	19	16514562	16514562	+	Silent	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	16514562	16514562	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	silent	c.1608	p.T536	0.049	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	121	0	0.00	98	14	12.50	-	-	-
EVPL	0	genome.wustl.edu	37	17	74004932	74004932	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	17	74004932	74004932	G	A	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.4354	p.R1452W	0.963	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	91	0	0.00	56	72	55.38	-	-	-
FAT3	0	genome.wustl.edu	37	11	92616055	92616055	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	11	92616055	92616055	G	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	+1	known	missense	c.12433	p.A4145T	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	108	0	0.00	72	10	12.20	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	158	0	0.00	254	84	24.85	-	-	-
GPR114	0	genome.wustl.edu	37	16	57597859	57597859	+	Missense_Mutation	SNP	T	T	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	16	57597859	57597859	T	A	SNP	GPR114	ENST00000340339	human	ensembl	69_37n	+1	known	missense	c.397	p.C133S	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	68	0	0.00	27	30	52.63	-	-	-
GRSF1	0	genome.wustl.edu	37	4	71697363	71697363	+	Nonstop_Mutation	SNP	C	C	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	4	71697363	71697363	C	A	SNP	GRSF1	ENST00000514161	human	ensembl	69_37n	-1	putative	nonstop	c.653	p.*218L	0.543	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GRSF1	HGNC	ENSG00000132463	164	0	0.00	189	22	10.43	-	-	-
HSPG2	0	genome.wustl.edu	37	1	22174253	22174253	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	1	22174253	22174253	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.7954	p.V2652M	0.717	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	46	0	0.00	53	6	10.17	-	-	-
ISL1	0	genome.wustl.edu	37	5	50689391	50689391	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	5	50689391	50689391	T	C	SNP	ISL1	ENST00000230658	human	ensembl	69_37n	+1	known	missense	c.997	p.S333P	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	ISL1	HGNC	ENSG00000016082	309	0	0.00	159	37	18.88	-	-	-
KIAA1211L	0	genome.wustl.edu	37	2	99438563	99438564	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	2	99438563	99438564	-	A	INS	KIAA1211L	ENST00000397899	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2173_2172	p.E724fs	0.064:0.004	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872	16	0	0.00	9	18	66.67	-	-	-
KRTAP19-6	0	genome.wustl.edu	37	21	31914098	31914098	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	21	31914098	31914098	C	T	SNP	KRTAP19-6	ENST00000334046	human	ensembl	69_37n	-1	known	missense	c.55	p.G19S	0.000	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-6	HGNC	ENSG00000186925	447	0	0.00	255	72	21.88	-	-	-
LZTS1	0	genome.wustl.edu	37	8	20112587	20112587	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	8	20112587	20112587	G	A	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	missense	c.106	p.R36W	0.385	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	111	0	0.00	15	31	67.39	-	-	-
MAST4	0	genome.wustl.edu	37	5	66438047	66438047	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	5	66438047	66438047	G	A	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	+1	known	missense	c.2608	p.D870N	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	196	0	0.00	82	16	16.33	-	-	-
MGAT4B	0	genome.wustl.edu	37	5	179225212	179225212	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	5	179225212	179225212	G	A	SNP	MGAT4B	ENST00000337755	human	ensembl	69_37n	-1	known	missense	c.1621	p.R541C	1.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013	13	0	0.00	14	10	41.67	-	-	-
MYBBP1A	0	genome.wustl.edu	37	17	4448343	4448343	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	17	4448343	4448343	A	G	SNP	MYBBP1A	ENST00000381556	human	ensembl	69_37n	-1	known	missense	c.2288	p.V763A	1.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382	49	0	0.00	26	13	33.33	-	-	-
MYBPC2	0	genome.wustl.edu	37	19	50957393	50957393	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	50957393	50957393	C	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	+1	known	missense	c.1866	p.N622K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	121	1	0.82	123	30	19.61	-	-	-
N4BP2	0	genome.wustl.edu	37	4	40104400	40104400	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	4	40104400	40104400	C	T	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	+1	known	missense	c.935	p.T312I	0.000	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	160	0	0.00	116	48	29.27	-	-	-
NELL2	0	genome.wustl.edu	37	12	45105162	45105162	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	45105162	45105162	G	A	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	missense	c.1252	p.L418F	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	195	0	0.00	173	22	11.28	-	-	-
OPRM1	0	genome.wustl.edu	37	6	154412313	154412313	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	6	154412313	154412313	G	T	SNP	OPRM1	ENST00000524150	human	ensembl	69_37n	+1	known	missense	c.517	p.V173F	1.000	NULL	prints_Mu_opioid_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	353	2	0.56	280	40	12.50	-	-	-
OR5D18	0	genome.wustl.edu	37	11	55587367	55587367	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	11	55587367	55587367	G	T	SNP	OR5D18	ENST00000333976	human	ensembl	69_37n	+1	known	missense	c.262	p.V88F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119	716	0	0.00	318	73	18.67	-	-	-
OR6C6	0	genome.wustl.edu	37	12	55688683	55688683	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	55688683	55688683	G	A	SNP	OR6C6	ENST00000358433	human	ensembl	69_37n	-1	known	missense	c.334	p.L112F	0.670	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C6	HGNC	ENSG00000188324	178	0	0.00	107	29	21.32	-	-	-
OS9	0	genome.wustl.edu	37	12	58114298	58114298	+	Silent	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	58114298	58114298	C	T	SNP	OS9	ENST00000315970	human	ensembl	69_37n	+1	known	silent	c.1875	p.I625	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	190	0	0.00	282	37	11.60	-	-	-
PGM1	0	genome.wustl.edu	37	1	64097433	64097433	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	1	64097433	64097433	G	A	SNP	PGM1	ENST00000371083	human	ensembl	69_37n	+1	known	missense	c.716	p.R239H	1.000	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739	99	0	0.00	83	42	33.60	-	-	-
PSMD4	0	genome.wustl.edu	37	1	151239784	151239784	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	1	151239784	151239784	G	A	SNP	PSMD4	ENST00000368884	human	ensembl	69_37n	+1	known	missense	c.1099	p.G367S	0.821	NULL	pfam_Ubiquitin-int_motif,pfam_Ssl1-like,smart_VWF_A,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_VWF_A	-	no_errors	PSMD4	HGNC	ENSG00000159352	359	1	0.28	166	193	53.76	-	-	-
PTPRD	0	genome.wustl.edu	37	9	8504363	8504363	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	9	8504363	8504363	C	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	nonsense	c.1720	p.G574*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	560	0	0.00	545	94	14.69	-	-	-
SEPHS2	0	genome.wustl.edu	37	16	30455839	30455839	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	16	30455839	30455839	C	T	SNP	SEPHS2	ENST00000542752	human	ensembl	69_37n	-1	known	missense	c.1039	p.V347I	1.000	pfam_AIR_synth_C,superfamily_AIR_synth_C,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918	130	0	0.00	94	88	48.35	-	-	-
SGPL1	0	genome.wustl.edu	37	10	72604349	72604349	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	72604349	72604349	G	A	SNP	SGPL1	ENST00000373202	human	ensembl	69_37n	+1	known	nonsense	c.147	p.W49*	0.996	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC	ENSG00000166224	222	0	0.00	201	47	18.88	-	-	-
SLC32A1	0	genome.wustl.edu	37	20	37356319	37356319	+	Silent	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	20	37356319	37356319	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	69_37n	+1	known	silent	c.615	p.V205	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438	64	0	0.00	75	13	14.77	-	-	-
SLCO3A1	0	genome.wustl.edu	37	15	92671615	92671615	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	15	92671615	92671615	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	69_37n	+1	known	missense	c.1408	p.P470S	0.001	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463	314	0	0.00	285	38	11.76	-	-	-
SOX5	0	genome.wustl.edu	37	12	23687456	23687457	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	23687456	23687457	-	A	INS	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1989_1990	p.Q665fs	1.000:1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	139	0	0.00	117	58	33.14	-	-	-
TFRC	0	genome.wustl.edu	37	3	195787076	195787076	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	3	195787076	195787076	G	A	SNP	TFRC	ENST00000360110	human	ensembl	69_37n	-1	known	missense	c.1511	p.T504M	0.008	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274	273	0	0.00	207	68	24.73	-	-	-
TMC2	0	genome.wustl.edu	37	20	2596835	2596835	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	20	2596835	2596835	A	G	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	+1	known	missense	c.1925	p.N642S	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	225	0	0.00	197	116	37.06	-	-	-
TRIB2	0	genome.wustl.edu	37	2	12880596	12880596	+	Silent	SNP	C	C	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	2	12880596	12880596	C	T	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	+1	known	silent	c.708	p.D236	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	80	0	0.00	62	47	43.12	-	-	-
VNN2	0	genome.wustl.edu	37	6	133072390	133072390	+	Missense_Mutation	SNP	A	A	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	6	133072390	133072390	A	T	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.1094	p.L365H	0.954	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	378	0	0.00	257	120	31.83	-	-	-
ZNF680	0	genome.wustl.edu	37	7	63982642	63982642	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	7	63982642	63982642	G	T	SNP	ZNF680	ENST00000309683	human	ensembl	69_37n	-1	known	missense	c.490	p.H164N	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041	208	0	0.00	104	20	16.13	-	-	-
