Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF3	0	genome.wustl.edu	37	2	100170901	100170901	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	100170901	100170901	G	A	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.3506	p.P1169L	0.994	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	96	0	0.00	40	36	47.37	-	-	-
ASB5	0	genome.wustl.edu	37	4	177190238	177190238	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	177190238	177190238	G	C	SNP	ASB5	ENST00000296525	human	ensembl	69_37n	-1	known	missense	c.22	p.R8G	0.997	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB5	HGNC	ENSG00000164122	38	0	0.00	36	34	48.57	-	-	-
CACNA1F	0	genome.wustl.edu	37	X	49082871	49082871	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	X	49082871	49082871	A	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.1496	p.L499Q	0.691	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	124	0	0.00	14	11	42.31	-	-	-
CLSTN3	0	genome.wustl.edu	37	12	7293852	7293852	+	Silent	SNP	G	G	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	7293852	7293852	G	A	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	+1	known	silent	c.1338	p.E446	0.997	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	262	0	0.00	29	27	48.21	-	-	-
CMYA5	0	genome.wustl.edu	37	5	79033437	79033437	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	5	79033437	79033437	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	+1	known	missense	c.8849	p.G2950V	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	24	0	0.00	22	9	29.03	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950807	16950807	+	RNA	SNP	C	C	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	16950807	16950807	C	T	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.483	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	8	0	0.00	3	10	76.92	-	-	-
DNAH17	0	genome.wustl.edu	37	17	76501415	76501415	+	Missense_Mutation	SNP	T	T	G			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	17	76501415	76501415	T	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.4904	p.E1635A	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	42	0	0.00	33	27	44.26	-	-	-
DPY19L4	0	genome.wustl.edu	37	8	95796032	95796032	+	Splice_Site	SNP	T	T	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	8	95796032	95796032	T	A	SNP	DPY19L4	ENST00000414645	human	ensembl	69_37n	+1	known	splice_site	c.1848+2	e17+2	1.000	-	-	-	no_errors	DPY19L4	HGNC	ENSG00000156162	43	0	0.00	117	63	35.00	-	-	-
DYRK3	0	genome.wustl.edu	37	1	206810308	206810308	+	Silent	SNP	A	A	G			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	206810308	206810308	A	G	SNP	DYRK3	ENST00000367106	human	ensembl	69_37n	+1	known	silent	c.12	p.K4	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	82	0	0.00	101	122	54.71	-	-	-
FGF6	0	genome.wustl.edu	37	12	4554416	4554416	+	Silent	SNP	G	G	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	4554416	4554416	G	A	SNP	FGF6	ENST00000228837	human	ensembl	69_37n	-1	known	silent	c.321	p.S107	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF6	HGNC	ENSG00000111241	32	0	0.00	15	5	23.81	-	-	-
FRYL	0	genome.wustl.edu	37	4	48542474	48542474	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	48542474	48542474	A	C	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.6191	p.L2064R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	23	0	0.00	35	36	50.70	-	-	-
KIF1B	0	genome.wustl.edu	37	1	10386254	10386254	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	10386254	10386254	A	G	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	+1	known	missense	c.2623	p.T875A	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	86	0	0.00	6	49	87.50	-	-	-
KRTAP23-1	0	genome.wustl.edu	37	21	31720857	31720857	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	21	31720857	31720857	C	T	SNP	KRTAP23-1	ENST00000334160	human	ensembl	69_37n	-1	known	missense	c.68	p.G23D	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP23-1	HGNC	ENSG00000186980	180	0	0.00	60	47	43.93	-	-	-
LAMA1	0	genome.wustl.edu	37	18	6959369	6959369	+	Silent	SNP	C	C	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	18	6959369	6959369	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	silent	c.7749	p.A2583	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	41	0	0.00	37	19	33.93	-	-	-
MUC4	0	genome.wustl.edu	37	3	195508115	195508115	+	Missense_Mutation	SNP	T	T	G			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	3	195508115	195508115	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.10336	p.T3446P	0.077	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	35	0	0.00	764	137	14.92	-	-	-
OTUD4	0	genome.wustl.edu	37	4	146059245	146059245	+	Silent	SNP	C	C	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	146059245	146059245	C	T	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	silent	c.2682	p.L894	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	19	0	0.00	26	23	46.94	-	-	-
PCDHA4	0	genome.wustl.edu	37	5	140188293	140188293	+	Silent	SNP	C	C	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	5	140188293	140188293	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	+1	known	silent	c.1521	p.Y507	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	22	0	0.00	10	9	47.37	-	-	-
POTEF	0	genome.wustl.edu	37	2	130832835	130832835	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	130832835	130832835	C	T	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.2210	p.R737H	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	42	0	0.00	37	34	47.89	-	-	-
RBBP5	0	genome.wustl.edu	37	1	205073004	205073004	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	205073004	205073004	G	A	SNP	RBBP5	ENST00000264515	human	ensembl	69_37n	-1	known	missense	c.503	p.T168M	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP5	HGNC	ENSG00000117222	127	0	0.00	155	58	27.23	-	-	-
SLC9A5	0	genome.wustl.edu	37	16	67289834	67289834	+	Splice_Site	SNP	G	G	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	16	67289834	67289834	G	A	SNP	SLC9A5	ENST00000299798	human	ensembl	69_37n	+1	known	splice_site	c.911+1	e5+1	1.000	-	-	-	no_errors	SLC9A5	HGNC	ENSG00000135740	21	0	0.00	2	6	75.00	-	-	-
SYNPO2L	0	genome.wustl.edu	37	10	75406951	75406951	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	10	75406951	75406951	A	G	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	missense	c.2459	p.F820S	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	27	0	0.00	5	8	61.54	-	-	-
UHRF1BP1L	0	genome.wustl.edu	37	12	100482869	100482869	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	100482869	100482869	G	A	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.845	p.S282F	0.999	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	40	0	0.00	30	41	57.75	-	-	-
