Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CACNA2D3	0	genome.wustl.edu	37	3	55107522	55107522	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	55107522	55107522	T	C	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	+1	known	missense	c.3038	p.V1013A	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	106	0	0.00	90	16	14.95	-	-	-
E2F2	0	genome.wustl.edu	37	1	23847527	23847527	+	Silent	SNP	C	C	T			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	1	23847527	23847527	C	T	SNP	E2F2	ENST00000361729	human	ensembl	69_37n	-1	known	silent	c.615	p.G205	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F2	HGNC	ENSG00000007968	73	0	0.00	47	23	32.86	-	-	-
FAM122C	0	genome.wustl.edu	37	X	133955536	133955536	+	RNA	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	X	133955536	133955536	G	A	SNP	FAM122C	ENST00000495147	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM122C	HGNC	ENSG00000156500	505	1	0.20	214	49	18.63	-	-	-
FBXO40	0	genome.wustl.edu	37	3	121342188	121342188	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	121342188	121342188	G	A	SNP	FBXO40	ENST00000338040	human	ensembl	69_37n	+1	known	missense	c.1912	p.E638K	0.962	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833	40	0	0.00	23	6	20.69	-	-	-
GPS2	0	genome.wustl.edu	37	17	7217447	7217447	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	7217447	7217447	G	A	SNP	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	nonsense	c.349	p.Q117*	1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	423	0	0.00	112	66	37.08	-	-	-
LLGL1	0	genome.wustl.edu	37	17	18145296	18145296	+	Silent	SNP	C	C	T			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	18145296	18145296	C	T	SNP	LLGL1	ENST00000316843	human	ensembl	69_37n	+1	known	silent	c.2865	p.R955	0.000	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat	-	no_errors	LLGL1	HGNC	ENSG00000131899	72	0	0.00	28	16	36.36	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12032570	12032571	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	12032570	12032571	-	TC	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1039_1040	p.S350fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	277	0	0.00	92	29	23.97	-	-	-
MLLT4	0	genome.wustl.edu	37	6	168289974	168289974	+	Nonsense_Mutation	SNP	T	T	G			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	6	168289974	168289974	T	G	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	+1	known	nonsense	c.977	p.L326*	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	408	0	0.00	112	45	28.66	-	-	-
MYOM3	0	genome.wustl.edu	37	1	24390618	24390618	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	1	24390618	24390618	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.3575	p.A1192V	0.980	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	169	0	0.00	86	38	30.65	-	-	-
NUMBL	0	genome.wustl.edu	37	19	41183152	41183152	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	19	41183152	41183152	G	C	SNP	NUMBL	ENST00000252891	human	ensembl	69_37n	-1	known	missense	c.715	p.P239A	0.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	32	0	0.00	23	4	14.81	-	-	-
PCDH12	0	genome.wustl.edu	37	5	141334577	141334577	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	5	141334577	141334577	T	G	SNP	PCDH12	ENST00000231484	human	ensembl	69_37n	-1	known	missense	c.2840	p.N947T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	15	0	0.00	13	4	23.53	-	-	-
PDCD11	0	genome.wustl.edu	37	10	105200238	105200238	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	105200238	105200238	A	T	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	+1	known	missense	c.4340	p.Q1447L	0.191	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	296	0	0.00	179	51	22.17	-	-	-
PKD1L3	0	genome.wustl.edu	37	16	71976599	71976599	+	RNA	SNP	C	C	T			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	16	71976599	71976599	C	T	SNP	PKD1L3	ENST00000335106	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PKD1L3	HGNC	ENSG00000187008	182	0	0.00	81	21	20.59	-	-	-
PLA2G15	0	genome.wustl.edu	37	16	68293055	68293055	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	16	68293055	68293055	A	G	SNP	PLA2G15	ENST00000219345	human	ensembl	69_37n	+1	known	missense	c.734	p.N245S	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	22	0	0.00	20	8	28.57	-	-	-
RPP30	0	genome.wustl.edu	37	10	92656100	92656100	+	Silent	SNP	C	C	T			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	92656100	92656100	C	T	SNP	RPP30	ENST00000413330	human	ensembl	69_37n	+1	known	silent	c.648	p.D216	1.000	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688	237	1	0.42	135	30	18.18	-	-	-
SLC25A22	0	genome.wustl.edu	37	11	793561	793561	+	Silent	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	11	793561	793561	G	A	SNP	SLC25A22	ENST00000320230	human	ensembl	69_37n	-1	known	silent	c.261	p.N87	0.997	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542	91	0	0.00	82	15	15.46	-	-	-
SLC9C1	0	genome.wustl.edu	37	3	111901058	111901058	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	111901058	111901058	G	C	SNP	SLC9C1	ENST00000305815	human	ensembl	69_37n	-1	known	missense	c.2571	p.I857M	0.012	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139	199	0	0.00	69	23	25.00	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	24	0	0.00	11	7	38.89	-	-	-
TUBGCP5	0	genome.wustl.edu	37	15	22866738	22866738	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	15	22866738	22866738	G	A	SNP	TUBGCP5	ENST00000283645	human	ensembl	69_37n	+1	known	missense	c.2350	p.V784I	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP5	HGNC	ENSG00000153575	271	0	0.00	135	44	24.58	-	-	-
UNC45B	0	genome.wustl.edu	37	17	33504550	33504550	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	33504550	33504550	G	A	SNP	UNC45B	ENST00000268876	human	ensembl	69_37n	+1	known	missense	c.2182	p.D728N	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	70	0	0.00	32	6	15.79	-	-	-
ZNF511	0	genome.wustl.edu	37	10	135125374	135125374	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	135125374	135125374	G	A	SNP	ZNF511	ENST00000359035	human	ensembl	69_37n	+1	known	missense	c.709	p.V237I	0.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	15	0	0.00	5	8	61.54	-	-	-
