Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C11orf24	0	genome.wustl.edu	37	11	68031210	68031210	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	68031210	68031210	C	G	SNP	C11orf24	ENST00000304271	human	ensembl	69_37n	-1	known	missense	c.26	p.W9S	0.001	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	31	0	0.00	23	7	23.33	-	-	-
CACNA1B	0	genome.wustl.edu	37	9	140865931	140865931	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	9	140865931	140865931	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	+1	known	missense	c.1433	p.R478H	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	106	1	0.93	56	37	39.78	-	-	-
CCDC18	0	genome.wustl.edu	37	1	93646095	93646095	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	93646095	93646095	C	-	DEL	CCDC18	ENST00000557479	human	ensembl	69_37n	+1	known	frame_shift_del	c.8	p.T5fs	0.004	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	13	0	0.00	4	2	33.33	-	-	-
CWC25	0	genome.wustl.edu	37	17	36977158	36977158	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	36977158	36977158	C	T	SNP	CWC25	ENST00000225428	human	ensembl	69_37n	-1	known	missense	c.187	p.V63I	0.998	NULL	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296	40	0	0.00	33	18	35.29	-	-	-
FOXK2	0	genome.wustl.edu	37	17	80525932	80525932	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	80525932	80525932	C	T	SNP	FOXK2	ENST00000335255	human	ensembl	69_37n	+1	known	missense	c.617	p.A206V	1.000	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,prints_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568	39	0	0.00	16	12	42.86	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115703	8115703	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	10	8115703	8115703	T	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_del	c.1052	p.N352fs	1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	28	0	0.00	14	5	26.32	-	-	-
KCNA5	0	genome.wustl.edu	37	12	5154181	5154181	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	5154181	5154181	C	A	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	+1	known	missense	c.868	p.Q290K	0.135	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	23	0	0.00	10	7	41.18	-	-	-
KCNK9	0	genome.wustl.edu	37	8	140714982	140714982	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	140714982	140714982	T	C	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.254	p.Y85C	1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	38	0	0.00	70	15	17.24	-	-	-
MLL3	0	genome.wustl.edu	37	7	151860728	151860728	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	7	151860728	151860728	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.9934	p.Q3312*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	159	0	0.00	75	55	42.31	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1251806	1251806	+	Silent	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	1251806	1251806	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.1455	p.T485	0.192	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	18	0	0.00	10	13	54.17	-	-	-
NEGR1	0	genome.wustl.edu	37	1	72241932	72241932	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	72241932	72241932	C	T	SNP	NEGR1	ENST00000357731	human	ensembl	69_37n	-1	known	missense	c.458	p.G153E	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NEGR1	HGNC	ENSG00000172260	65	0	0.00	32	25	43.86	-	-	-
NPIPL2	0	genome.wustl.edu	37	16	74419288	74419288	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	74419288	74419288	T	C	SNP	NPIPL2	ENST00000429990	human	ensembl	69_37n	+1	known	missense	c.298	p.S100P	0.043	pfam_NPIP	pfam_NPIP	-	no_errors	NPIPL2	HGNC	ENSG00000196436	344	0	0.00	167	82	32.93	-	-	-
NPLOC4	0	genome.wustl.edu	37	17	79526303	79526303	+	Silent	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	79526303	79526303	G	A	SNP	NPLOC4	ENST00000331134	human	ensembl	69_37n	-1	known	silent	c.1809	p.C603	1.000	smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,smart_Znf_RanBP2,pirsf_PolyUb_recognition_cplx_Npl4,pfscan_Znf_RanBP2	-	no_errors	NPLOC4	HGNC	ENSG00000182446	18	0	0.00	19	4	17.39	-	-	-
OR2W5	0	genome.wustl.edu	37	1	247655187	247655187	+	RNA	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	247655187	247655187	G	A	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.375	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	33	0	0.00	31	5	13.89	-	-	-
PCDHGA11	0	genome.wustl.edu	37	5	140802650	140802650	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	5	140802650	140802650	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	+1	known	missense	c.1856	p.A619V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	32	0	0.00	18	9	33.33	-	-	-
PRR16	0	genome.wustl.edu	37	5	120022380	120022380	+	Silent	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	5	120022380	120022380	G	A	SNP	PRR16	ENST00000407149	human	ensembl	69_37n	+1	known	silent	c.891	p.R297	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838	27	0	0.00	5	5	50.00	-	-	-
PRRG2	0	genome.wustl.edu	37	19	50091757	50091757	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	50091757	50091757	G	A	SNP	PRRG2	ENST00000246794	human	ensembl	69_37n	+1	known	missense	c.305	p.R102H	0.245	superfamily_GLA_domain	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG2	HGNC	ENSG00000126460	31	0	0.00	27	10	27.03	-	-	-
RECQL	0	genome.wustl.edu	37	12	21639494	21639494	+	Silent	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	21639494	21639494	C	T	SNP	RECQL	ENST00000421138	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700	49	0	0.00	16	16	50.00	-	-	-
SAMD4A	0	genome.wustl.edu	37	14	55169153	55169153	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	14	55169153	55169153	G	T	SNP	SAMD4A	ENST00000392067	human	ensembl	69_37n	+1	known	missense	c.570	p.W190C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577	34	0	0.00	11	14	56.00	-	-	-
SHANK1	0	genome.wustl.edu	37	19	51165718	51165718	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	51165718	51165718	C	T	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.6014	p.R2005Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	18	0	0.00	14	7	33.33	-	-	-
STUB1	0	genome.wustl.edu	37	16	731865	731865	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	731865	731865	C	T	SNP	STUB1	ENST00000566408	human	ensembl	69_37n	+1	putative	missense	c.314	p.A105V	1.000	NULL	pfam_Ubox_domain,smart_Ubox_domain,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STUB1	HGNC	ENSG00000103266	29	0	0.00	16	20	55.56	-	-	-
TGM2	0	genome.wustl.edu	37	20	36776418	36776418	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	20	36776418	36776418	C	T	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	missense	c.626	p.R209H	0.003	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	13	0	0.00	12	5	29.41	-	-	-
TP53BP2	0	genome.wustl.edu	37	1	223971901	223971901	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	223971901	223971901	G	C	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	missense	c.3279	p.I1093M	0.970	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	62	0	0.00	37	74	66.67	-	-	-
TTC39A	0	genome.wustl.edu	37	1	51767913	51767913	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	51767913	51767913	C	-	DEL	TTC39A	ENST00000262676	human	ensembl	69_37n	-1	known	frame_shift_del	c.1103	p.G368fs	0.000	NULL	pfam_OMP_IML2_mit/TPR_39	-	no_errors	TTC39A	HGNC	ENSG00000085831	10	0	0.00	4	2	33.33	-	-	-
UBC	0	genome.wustl.edu	37	12	125396630	125396631	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	125396630	125396631	-	G	INS	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1688_1687	p.Q563fs	1.000:1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	43	0	0.00	22	13	37.14	-	-	-
UBE2Q2P1	0	genome.wustl.edu	37	15	85070737	85070738	+	RNA	INS	-	-	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	15	85070737	85070738	-	A	INS	UBE2Q2P1	ENST00000339094	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007:0.009	-	-	-	no_errors	UBE2Q2P1	HGNC	ENSG00000189136	11	0	0.00	5	3	37.50	-	-	-
UBN1	0	genome.wustl.edu	37	16	4924371	4924371	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	4924371	4924371	C	T	SNP	UBN1	ENST00000262376	human	ensembl	69_37n	+1	known	missense	c.1960	p.P654S	0.096	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900	17	0	0.00	25	8	24.24	-	-	-
UBQLN3	0	genome.wustl.edu	37	11	5530467	5530467	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	5530467	5530467	G	A	SNP	UBQLN3	ENST00000311659	human	ensembl	69_37n	-1	known	missense	c.322	p.P108S	0.840	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520	53	0	0.00	37	13	26.00	-	-	-
USP53	0	genome.wustl.edu	37	4	120193097	120193097	+	Silent	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	4	120193097	120193097	C	T	SNP	USP53	ENST00000274030	human	ensembl	69_37n	+1	known	silent	c.2082	p.I694	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	32	0	0.00	18	12	40.00	-	-	-
VRK1	0	genome.wustl.edu	37	14	97299833	97299833	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	14	97299833	97299833	G	A	SNP	VRK1	ENST00000216639	human	ensembl	69_37n	+1	known	missense	c.25	p.A9T	0.120	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK1	HGNC	ENSG00000100749	60	0	0.00	24	18	42.86	-	-	-
ZNF285	0	genome.wustl.edu	37	19	44891754	44891754	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	44891754	44891754	G	A	SNP	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	missense	c.653	p.T218M	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	41	0	0.00	28	12	30.00	-	-	-
ZNF429	0	genome.wustl.edu	37	19	21719514	21719514	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	21719514	21719514	A	G	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	+1	known	missense	c.659	p.K220R	0.713	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	81	0	0.00	35	9	20.45	-	-	-
ZNF548	0	genome.wustl.edu	37	19	57908526	57908526	+	Silent	SNP	C	C	T			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	57908526	57908526	C	T	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	+1	known	silent	c.162	p.A54	0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	140	1	0.71	93	71	43.29	-	-	-
ZNF623	0	genome.wustl.edu	37	8	144732952	144732952	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	144732952	144732952	T	C	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	+1	known	missense	c.910	p.S304P	0.036	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	71	0	0.00	36	103	73.57	-	-	-
