Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CDK10	0	genome.wustl.edu	37	16	89758243	89758243	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	89758243	89758243	A	G	SNP	CDK10	ENST00000353379	human	ensembl	69_37n	+1	known	missense	c.365	p.Q122R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK10	HGNC	ENSG00000185324	52	0	0.00	42	6	12.50	-	-	-
CX3CL1	0	genome.wustl.edu	37	16	57413659	57413659	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	57413659	57413659	G	A	SNP	CX3CL1	ENST00000006053	human	ensembl	69_37n	+1	known	missense	c.184	p.A62T	0.797	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210	33	0	0.00	39	5	11.36	-	-	-
DDR2	0	genome.wustl.edu	37	1	162731140	162731140	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	1	162731140	162731140	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	+1	known	missense	c.995	p.R332Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	53	0	0.00	55	9	14.06	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115888	8115889	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	10	8115888	8115889	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1237_1238	p.S414fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0.00	45	8	15.09	-	-	-
GIGYF2	0	genome.wustl.edu	37	2	233655500	233655500	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	2	233655500	233655500	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	+1	known	nonsense	c.871	p.R291*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	69	0	0.00	72	10	12.20	-	-	-
MYH2	0	genome.wustl.edu	37	17	10428881	10428881	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	17	10428881	10428881	G	A	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.4424	p.A1475V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	56	0	0.00	55	10	15.38	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037856	10037856	+	RNA	SNP	G	G	A			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	Y	10037856	10037856	G	A	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	12	0	0.00	11	5	31.25	-	-	-
SDK1	0	genome.wustl.edu	37	7	4272965	4272965	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	7	4272965	4272965	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	+1	known	missense	c.5906	p.R1969Q	0.825	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	17	0	0.00	28	7	20.00	-	-	-
TMF1	0	genome.wustl.edu	37	3	69072340	69072340	+	Silent	SNP	T	T	C			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	3	69072340	69072340	T	C	SNP	TMF1	ENST00000543976	human	ensembl	69_37n	-1	known	silent	c.3279	p.Q1093	0.616	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	112	0	0.00	69	9	11.39	-	-	-
