Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BAHCC1	0	genome.wustl.edu	37	17	79422327	79422327	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	79422327	79422327	G	C	SNP	BAHCC1	ENST00000307745	human	ensembl	69_37n	+1	known	missense	c.4480	p.E1494Q	0.986	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	15	0	0.00	19	12	38.71	-	-	-
C19orf40	0	genome.wustl.edu	37	19	33464469	33464469	+	Splice_Site	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	19	33464469	33464469	G	A	SNP	C19orf40	ENST00000588258	human	ensembl	69_37n	+1	known	splice_site	c.243+1	e2+1	1.000	-	-	-	no_errors	C19orf40	HGNC	ENSG00000131944	83	0	0.00	76	23	23.23	-	-	-
CLEC4E	0	genome.wustl.edu	37	12	8692538	8692539	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	12	8692538	8692539	CT	-	DEL	CLEC4E	ENST00000299663	human	ensembl	69_37n	-1	known	frame_shift_del	c.43_42	p.G15fs	0.000:0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4E	HGNC	ENSG00000166523	106	0	0.00	53	8	12.50	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950807	16950807	+	RNA	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	16950807	16950807	C	T	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.483	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	14	0	0.00	19	7	26.92	-	-	-
CSGALNACT1	0	genome.wustl.edu	37	8	19263493	19263493	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	8	19263493	19263493	C	T	SNP	CSGALNACT1	ENST00000311540	human	ensembl	69_37n	-1	known	missense	c.1397	p.R466Q	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408	74	0	0.00	34	37	52.11	-	-	-
CTSL2	0	genome.wustl.edu	37	9	99798887	99798887	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	99798887	99798887	C	G	SNP	CTSL2	ENST00000259470	human	ensembl	69_37n	-1	known	missense	c.539	p.G180A	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL2	HGNC	ENSG00000136943	150	0	0.00	126	32	20.13	-	-	-
DEPDC7	0	genome.wustl.edu	37	11	33047294	33047294	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	11	33047294	33047294	C	T	SNP	DEPDC7	ENST00000241051	human	ensembl	69_37n	+1	known	nonsense	c.163	p.R55*	0.980	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690	214	0	0.00	103	49	32.24	-	-	-
EPHB2	0	genome.wustl.edu	37	1	23222000	23222000	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	23222000	23222000	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	+1	known	missense	c.1627	p.L543F	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	153	0	0.00	114	52	31.33	-	-	-
FAM71F2	0	genome.wustl.edu	37	7	128317709	128317709	+	Silent	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	7	128317709	128317709	C	T	SNP	FAM71F2	ENST00000480462	human	ensembl	69_37n	+1	known	silent	c.457	p.L153	1.000	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71F2	HGNC	ENSG00000205085	66	0	0.00	29	14	32.56	-	-	-
FAM75D1	0	genome.wustl.edu	37	9	84605378	84605378	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	84605378	84605378	G	T	SNP	FAM75D1	ENST00000344803	human	ensembl	69_37n	+1	known	missense	c.279	p.R93S	0.003	NULL	NULL	-	no_errors	FAM75D1	HGNC	ENSG00000214929	311	0	0.00	149	66	30.56	-	-	-
GPR125	0	genome.wustl.edu	37	4	22390523	22390523	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	4	22390523	22390523	G	A	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.2771	p.A924V	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	57	0	0.00	35	4	10.26	-	-	-
IP6K2	0	genome.wustl.edu	37	3	48732632	48732633	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	48732632	48732633	-	C	INS	IP6K2	ENST00000328631	human	ensembl	69_37n	-1	known	frame_shift_ins	c.93_92	p.C31fs	0.631:1.000	NULL	pfam_IPK	-	no_errors	IP6K2	HGNC	ENSG00000068745	104	0	0.00	64	36	36.00	-	-	-
KAT6B	0	genome.wustl.edu	37	10	76739051	76739051	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	10	76739051	76739051	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	69_37n	+1	known	missense	c.2185	p.E729K	1.000	superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650	290	1	0.34	105	33	23.91	-	-	-
KRT28	0	genome.wustl.edu	37	17	38954517	38954517	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	38954517	38954517	C	G	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	missense	c.660	p.E220D	0.999	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	196	0	0.00	207	39	15.85	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12011227	12011228	+	Splice_Site	INS	-	-	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	12011227	12011228	-	T	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	splice_site_ins	c.666+1_666+1	e6+1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	222	0	0.00	73	11	13.10	-	-	-
MIA3	0	genome.wustl.edu	37	1	222801435	222801435	+	Silent	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	222801435	222801435	G	A	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	+1	known	silent	c.873	p.E291	0.929	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	109	0	0.00	140	24	14.63	-	-	-
MLLT10	0	genome.wustl.edu	37	10	21827790	21827790	+	Missense_Mutation	SNP	T	T	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	10	21827790	21827790	T	A	SNP	MLLT10	ENST00000430455	human	ensembl	69_37n	+1	known	missense	c.85	p.W29R	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLLT10	HGNC	ENSG00000078403	252	0	0.00	91	57	38.51	-	-	-
PARP14	0	genome.wustl.edu	37	3	122399872	122399872	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	122399872	122399872	C	T	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	+1	known	missense	c.142	p.P48S	0.104	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	22	0	0.00	17	8	32.00	-	-	-
PDGFRB	0	genome.wustl.edu	37	5	149510159	149510159	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	5	149510159	149510159	C	T	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.1310	p.R437H	0.850	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	29	0	0.00	23	11	32.35	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	163	0	0.00	57	102	64.15	-	-	-
PSEN2	0	genome.wustl.edu	37	1	227069706	227069706	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	227069706	227069706	A	G	SNP	PSEN2	ENST00000391872	human	ensembl	69_37n	+1	known	missense	c.197	p.E66G	0.998	NULL	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801	19	0	0.00	14	27	64.29	-	-	-
PTPN22	0	genome.wustl.edu	37	1	114397570	114397570	+	Missense_Mutation	SNP	A	A	C			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	114397570	114397570	A	C	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.642	p.C214W	0.978	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	169	0	0.00	85	40	32.00	-	-	-
RIPK1	0	genome.wustl.edu	37	6	3077012	3077012	+	RNA	DEL	G	G	-			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	6	3077012	3077012	G	-	DEL	RIPK1	ENST00000490396	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	46	0	0.00	20	3	12.50	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037867	10037867	+	RNA	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	Y	10037867	10037867	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	42	0	0.00	29	4	12.12	-	-	-
RNF135	0	genome.wustl.edu	37	17	29325839	29325839	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	29325839	29325839	C	T	SNP	RNF135	ENST00000328381	human	ensembl	69_37n	+1	known	missense	c.929	p.S310F	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF135	HGNC	ENSG00000181481	69	0	0.00	49	33	40.24	-	-	-
RTL1	0	genome.wustl.edu	37	14	101348922	101348922	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	14	101348922	101348922	A	G	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.2204	p.V735A	0.956	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	103	0	0.00	86	41	32.28	-	-	-
SEC24A	0	genome.wustl.edu	37	5	134059307	134059307	+	Silent	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	5	134059307	134059307	C	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	+1	known	silent	c.3114	p.F1038	0.973	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	286	0	0.00	110	47	29.75	-	-	-
SH3PXD2B	0	genome.wustl.edu	37	5	171766429	171766429	+	Missense_Mutation	SNP	A	A	C			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	5	171766429	171766429	A	C	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	missense	c.1680	p.I560M	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	25	0	0.00	30	16	34.78	-	-	-
SI	0	genome.wustl.edu	37	3	164716394	164716394	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	164716394	164716394	G	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	nonsense	c.4474	p.R1492*	0.728	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	362	0	0.00	160	81	33.61	-	-	-
SMARCA2	0	genome.wustl.edu	37	9	2116045	2116045	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	2116045	2116045	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	+1	known	missense	c.3680	p.N1227S	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	34	0	0.00	21	11	34.38	-	-	-
SVEP1	0	genome.wustl.edu	37	9	113169979	113169979	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	113169979	113169979	A	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.7901	p.F2634S	0.087	NULL	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	56	0	0.00	38	18	32.14	-	-	-
SYNE2	0	genome.wustl.edu	37	14	64636985	64636985	+	Silent	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	14	64636985	64636985	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	+1	known	silent	c.17040	p.R5680	0.150	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	182	0	0.00	80	46	36.51	-	-	-
TARS2	0	genome.wustl.edu	37	1	150479529	150479529	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	150479529	150479529	G	A	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	+1	known	missense	c.2146	p.E716K	0.997	superfamily_Anticodon-bd	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	89	0	0.00	121	49	28.82	-	-	-
TBK1	0	genome.wustl.edu	37	12	64875760	64875760	+	Silent	SNP	A	A	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	12	64875760	64875760	A	G	SNP	TBK1	ENST00000331710	human	ensembl	69_37n	+1	known	silent	c.951	p.Q317	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TBK1	HGNC	ENSG00000183735	184	1	0.54	120	37	23.57	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	21	0	0.00	30	9	23.08	-	-	-
TMC5	0	genome.wustl.edu	37	16	19451502	19451502	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	16	19451502	19451502	C	G	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	+1	known	missense	c.142	p.P48A	0.001	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	122	0	0.00	76	31	28.97	-	-	-
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	7578190	7578190	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220S	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	210	0	0.00	68	67	49.63	-	-	-
TSPAN1	0	genome.wustl.edu	37	1	46650495	46650495	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	46650495	46650495	C	G	SNP	TSPAN1	ENST00000372003	human	ensembl	69_37n	+1	known	missense	c.378	p.I126M	0.997	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN1	HGNC	ENSG00000117472	96	0	0.00	78	34	30.36	-	-	-
VPREB1	0	genome.wustl.edu	37	22	22599458	22599458	+	Silent	SNP	C	C	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	22	22599458	22599458	C	T	SNP	VPREB1	ENST00000403807	human	ensembl	69_37n	+1	known	silent	c.147	p.I49	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VPREB1	HGNC	ENSG00000169575	93	0	0.00	59	24	28.92	-	-	-
WDR7	0	genome.wustl.edu	37	18	54385232	54385232	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	18	54385232	54385232	A	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	+1	known	missense	c.1616	p.D539V	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	213	1	0.47	35	48	57.83	-	-	-
WHAMMP2	0	genome.wustl.edu	37	15	28991161	28991161	+	RNA	DEL	C	C	-			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	15	28991161	28991161	C	-	DEL	WHAMMP2	ENST00000508764	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334	34	0	0.00	9	2	15.38	-	-	-
