Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APTX	0	genome.wustl.edu	37	9	32987555	32987555	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	9	32987555	32987555	G	C	SNP	APTX	ENST00000379819	human	ensembl	69_37n	-1	known	missense	c.512	p.A171G	0.000	NULL	pfam_Histidine_triad_HIT,superfamily_HIT-like,superfamily_SMAD_FHA_domain,pfscan_Histidine_triad_HIT	-	no_errors	APTX	HGNC	ENSG00000137074	277	0	0.00	240	124	34.07	-	-	-
ATN1	0	genome.wustl.edu	37	12	7047646	7047646	+	Silent	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	7047646	7047646	G	A	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	+1	known	silent	c.2520	p.K840	0.994	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	65	0	0.00	23	18	43.90	-	-	-
BPI	0	genome.wustl.edu	37	20	36962894	36962894	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	20	36962894	36962894	C	T	SNP	BPI	ENST00000417318	human	ensembl	69_37n	+1	novel	missense	c.824	p.T275M	0.017	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BPI	HGNC	ENSG00000101425	312	2	0.63	291	160	35.48	-	-	-
CGRRF1	0	genome.wustl.edu	37	14	54996904	54996904	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	14	54996904	54996904	G	T	SNP	CGRRF1	ENST00000216420	human	ensembl	69_37n	+1	known	missense	c.382	p.D128Y	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CGRRF1	HGNC	ENSG00000100532	147	0	0.00	270	36	11.76	-	-	-
DCAF17	0	genome.wustl.edu	37	2	172291597	172291597	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	2	172291597	172291597	G	A	SNP	DCAF17	ENST00000375255	human	ensembl	69_37n	+1	known	missense	c.131	p.S44N	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	109	0	0.00	29	26	46.43	-	-	-
DLG5	0	genome.wustl.edu	37	10	79570872	79570873	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	79570872	79570873	-	G	INS	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4443_4442	p.A1482fs	0.852:0.901	superfamily_PDZ	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	28	0	0.00	27	3	10.00	-	-	-
EMILIN2	0	genome.wustl.edu	37	18	2909695	2909695	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	18	2909695	2909695	C	T	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	+1	known	missense	c.2702	p.P901L	0.000	smart_C1q,pfscan_C1q	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	63	0	0.00	21	6	22.22	-	-	-
FAM188B	0	genome.wustl.edu	37	7	30818062	30818062	+	Silent	SNP	A	A	C			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	7	30818062	30818062	A	C	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	+1	known	silent	c.78	p.T26	0.166	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	76	0	0.00	62	26	29.55	-	-	-
FANCM	0	genome.wustl.edu	37	14	45644374	45644375	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	14	45644374	45644375	-	T	INS	FANCM	ENST00000267430	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2417_2418	p.D807fs	0.000:0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	143	0	0.00	100	65	39.39	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	49	0	0.00	57	24	29.63	-	-	-
GDI1	0	genome.wustl.edu	37	X	153668416	153668416	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	X	153668416	153668416	C	T	SNP	GDI1	ENST00000447750	human	ensembl	69_37n	+1	known	missense	c.517	p.R173W	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	162	0	0.00	41	11	21.15	-	-	-
GLT8D1	0	genome.wustl.edu	37	3	52728920	52728920	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	3	52728920	52728920	C	A	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	missense	c.1057	p.D353Y	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	122	0	0.00	82	40	32.79	-	-	-
GNAZ	0	genome.wustl.edu	37	22	23438487	23438488	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	22	23438487	23438488	-	G	INS	GNAZ	ENST00000248996	human	ensembl	69_37n	+1	known	frame_shift_ins	c.605_606	p.Q205fs	1.000:1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266	60	0	0.00	32	4	11.11	-	-	-
KCNC2	0	genome.wustl.edu	37	12	75444552	75444552	+	Silent	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	75444552	75444552	G	A	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	silent	c.1233	p.N411	0.996	pfam_Ion_trans_dom,pfam_Ion_trans_2	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	165	0	0.00	129	205	61.38	-	-	-
KPNA5	0	genome.wustl.edu	37	6	117050794	117050794	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	6	117050794	117050794	T	C	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	+1	known	missense	c.1322	p.V441A	0.999	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	200	0	0.00	166	113	40.50	-	-	-
LETM1	0	genome.wustl.edu	37	4	1836578	1836578	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	4	1836578	1836578	G	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.870	p.F290L	0.999	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	53	0	0.00	26	9	25.71	-	-	-
LONP1	0	genome.wustl.edu	37	19	5708352	5708352	+	Splice_Site	SNP	C	C	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	19	5708352	5708352	C	T	SNP	LONP1	ENST00000360614	human	ensembl	69_37n	-1	known	splice_site	c.932+1	e5+1	1.000	-	-	-	no_errors	LONP1	HGNC	ENSG00000196365	14	0	0.00	3	8	72.73	-	-	-
MAML3	0	genome.wustl.edu	37	4	140811265	140811265	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	4	140811265	140811265	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.1325	p.P442L	0.999	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	196	0	0.00	89	79	46.75	-	-	-
MED24	0	genome.wustl.edu	37	17	38182541	38182541	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	17	38182541	38182541	A	T	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	missense	c.1853	p.V618E	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	177	0	0.00	35	45	55.56	-	-	-
MLLT10	0	genome.wustl.edu	37	10	21884363	21884363	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	21884363	21884363	T	A	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	+1	known	nonsense	c.399	p.Y133*	0.985	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	162	0	0.00	105	57	35.19	-	-	-
MYOM1	0	genome.wustl.edu	37	18	3090726	3090726	+	Silent	SNP	C	C	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	18	3090726	3090726	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	silent	c.3939	p.E1313	1.000	smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	147	0	0.00	42	47	52.81	-	-	-
NEB	0	genome.wustl.edu	37	2	152499685	152499686	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	2	152499685	152499686	-	T	INS	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8139_8138	p.N2713fs	0.998:1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	233	0	0.00	136	26	16.05	-	-	-
OTP	0	genome.wustl.edu	37	5	76932789	76932789	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	5	76932789	76932789	G	T	SNP	OTP	ENST00000306422	human	ensembl	69_37n	-1	known	missense	c.304	p.Q102K	1.000	superfamily_Homeodomain-like,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	OTP	HGNC	ENSG00000171540	82	0	0.00	34	13	27.66	-	-	-
PCK2	0	genome.wustl.edu	37	14	24568928	24568928	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	14	24568928	24568928	A	C	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	+1	known	missense	c.1014	p.E338D	0.901	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	143	0	0.00	62	43	40.57	-	-	-
PLXNA1	0	genome.wustl.edu	37	3	126735390	126735391	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	3	126735390	126735391	-	C	INS	PLXNA1	ENST00000393409	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3045_3046	p.G1017fs	0.554:0.981	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	16	0	0.00	25	4	13.79	-	-	-
RB1CC1	0	genome.wustl.edu	37	8	53558327	53558327	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	8	53558327	53558327	C	T	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.3922	p.E1308K	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	142	0	0.00	102	37	26.62	-	-	-
REV3L	0	genome.wustl.edu	37	6	111695272	111695272	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	6	111695272	111695272	A	G	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.4286	p.I1429T	0.958	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	384	0	0.00	275	83	23.18	-	-	-
SCN8A	0	genome.wustl.edu	37	12	52145348	52145348	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	52145348	52145348	T	G	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	+1	known	missense	c.2341	p.F781V	0.998	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	248	0	0.00	101	129	56.09	-	-	-
SELP	0	genome.wustl.edu	37	1	169588391	169588391	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	1	169588391	169588391	G	A	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.70	p.L24F	0.235	NULL	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	116	0	0.00	112	54	32.53	-	-	-
SHANK1	0	genome.wustl.edu	37	19	51165806	51165806	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	19	51165806	51165806	C	-	DEL	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	frame_shift_del	c.5926	p.A1976fs	0.455	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	19	0	0.00	9	2	18.18	-	-	-
SLIT1	0	genome.wustl.edu	37	10	98763830	98763830	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	98763830	98763830	A	-	DEL	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	frame_shift_del	c.3860	p.V1287fs	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	108	0	0.00	76	43	36.13	-	-	-
SMYD4	0	genome.wustl.edu	37	17	1690265	1690266	+	In_Frame_Ins	INS	-	-	TTT			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	17	1690265	1690266	-	TTT	INS	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	in_frame_ins	c.1723_1722	p.574in_frame_insK	1.000:0.977	pfam_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	52	0	0.00	31	37	54.41	-	-	-
SP140	0	genome.wustl.edu	37	2	231176276	231176276	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	2	231176276	231176276	G	A	SNP	SP140	ENST00000392045	human	ensembl	69_37n	+1	known	missense	c.2471	p.R824H	0.655	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	213	0	0.00	47	36	43.37	-	-	-
TET1	0	genome.wustl.edu	37	10	70406122	70406122	+	Silent	SNP	A	A	G			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	70406122	70406122	A	G	SNP	TET1	ENST00000373644	human	ensembl	69_37n	+1	known	silent	c.3636	p.K1212	0.912	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	223	0	0.00	136	56	29.17	-	-	-
TPH2	0	genome.wustl.edu	37	12	72388322	72388322	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	72388322	72388322	G	A	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	+1	known	missense	c.1045	p.E349K	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	138	0	0.00	579	172	22.90	-	-	-
TSNARE1	0	genome.wustl.edu	37	8	143425597	143425597	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	8	143425597	143425597	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	69_37n	-1	known	missense	c.475	p.R159C	0.017	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	46	0	0.00	25	4	13.79	-	-	-
VCX	0	genome.wustl.edu	37	X	7811259	7811259	+	Silent	SNP	G	G	C			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	X	7811259	7811259	G	C	SNP	VCX	ENST00000381059	human	ensembl	69_37n	+1	known	silent	c.15	p.P5	0.001	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	35	0	0.00	23	14	37.84	-	-	-
