Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTL6B	0	genome.wustl.edu	37	7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	20	0	0.00	18	3	14.29	-	-	-
ADAMTSL4	0	genome.wustl.edu	37	1	150530505	150530506	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	1	150530505	150530506	-	G	INS	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2331_2332	p.G780fs	1.000:1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	26	0	0.00	31	4	11.43	-	-	-
AOAH	0	genome.wustl.edu	37	7	36552857	36552857	+	Silent	SNP	C	C	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	36552857	36552857	C	T	SNP	AOAH	ENST00000431169	human	ensembl	69_37n	-1	putative	silent	c.1848	p.E616	0.604	NULL	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	233	0	0.00	218	100	31.45	-	-	-
BMPER	0	genome.wustl.edu	37	7	34192803	34192803	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	34192803	34192803	G	T	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	+1	known	missense	c.1976	p.C659F	0.997	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	232	0	0.00	150	99	39.76	-	-	-
CADPS	0	genome.wustl.edu	37	3	62423869	62423869	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	62423869	62423869	C	G	SNP	CADPS	ENST00000473635	human	ensembl	69_37n	-1	known	missense	c.662	p.W221S	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CADPS	HGNC	ENSG00000163618	141	0	0.00	104	58	35.80	-	-	-
DCAF8L2	0	genome.wustl.edu	37	X	27765025	27765025	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	X	27765025	27765025	G	A	SNP	DCAF8L2	ENST00000451261	human	ensembl	69_37n	+1	known	missense	c.13	p.E5K	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	11	0	0.00	21	11	34.38	-	-	-
OR1N1	0	genome.wustl.edu	37	9	125289198	125289198	+	Silent	SNP	G	G	A			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	9	125289198	125289198	G	A	SNP	OR1N1	ENST00000304880	human	ensembl	69_37n	-1	known	silent	c.375	p.C125	0.163	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1N1	HGNC	ENSG00000171505	132	0	0.00	77	63	45.00	-	-	-
OR6V1	0	genome.wustl.edu	37	7	142749782	142749782	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	142749782	142749782	C	A	SNP	OR6V1	ENST00000418316	human	ensembl	69_37n	+1	known	missense	c.345	p.D115E	0.991	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6V1	HGNC	ENSG00000225781	311	0	0.00	128	103	44.59	-	-	-
PCMTD2	0	genome.wustl.edu	37	20	62896720	62896720	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	20	62896720	62896720	G	A	SNP	PCMTD2	ENST00000308824	human	ensembl	69_37n	+1	known	missense	c.520	p.E174K	1.000	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	91	0	0.00	143	99	40.91	-	-	-
POTEM	0	genome.wustl.edu	37	14	19990641	19990641	+	Silent	SNP	C	C	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	14	19990641	19990641	C	T	SNP	POTEM	ENST00000551509	human	ensembl	69_37n	-1	novel	silent	c.1434	p.K478	0.978	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	18	0	0.00	19	6	24.00	-	-	-
PPM1L	0	genome.wustl.edu	37	3	160783305	160783305	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	160783305	160783305	A	C	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	+1	known	missense	c.689	p.D230A	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	228	0	0.00	172	132	43.28	-	-	-
PROK2	0	genome.wustl.edu	37	3	71821981	71821981	+	Splice_Site	SNP	T	T	C			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	71821981	71821981	T	C	SNP	PROK2	ENST00000295619	human	ensembl	69_37n	-1	known	splice_site	c.286-2	e4-2	0.999	-	-	-	no_errors	PROK2	HGNC	ENSG00000163421	38	0	0.00	86	52	37.68	-	-	-
RICTOR	0	genome.wustl.edu	37	5	38958580	38958580	+	Silent	SNP	G	G	A			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	38958580	38958580	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	silent	c.2385	p.S795	0.731	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	157	0	0.00	121	89	42.38	-	-	-
RNASE3	0	genome.wustl.edu	37	14	21359857	21359857	+	Silent	SNP	A	A	G			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	14	21359857	21359857	A	G	SNP	RNASE3	ENST00000304639	human	ensembl	69_37n	+1	known	silent	c.12	p.K4	0.000	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE3	HGNC	ENSG00000169397	368	0	0.00	200	155	43.54	-	-	-
SORCS2	0	genome.wustl.edu	37	4	7714487	7714487	+	Silent	SNP	C	C	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	4	7714487	7714487	C	T	SNP	SORCS2	ENST00000507866	human	ensembl	69_37n	+1	known	silent	c.1896	p.S632	0.593	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	46	0	0.00	50	8	13.79	-	-	-
TLE2	0	genome.wustl.edu	37	19	3013795	3013796	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	19	3013795	3013796	-	G	INS	TLE2	ENST00000262953	human	ensembl	69_37n	-1	known	frame_shift_ins	c.745_744	p.S248fs	1.000:1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	36	0	0.00	11	3	21.43	-	-	-
TMEM155	0	genome.wustl.edu	37	4	122681612	122681612	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	4	122681612	122681612	C	T	SNP	TMEM155	ENST00000337677	human	ensembl	69_37n	-1	known	missense	c.230	p.R77H	0.000	NULL	NULL	-	no_errors	TMEM155	HGNC	ENSG00000164112	16	0	0.00	9	5	35.71	-	-	-
TMEM71	0	genome.wustl.edu	37	8	133764098	133764098	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	8	133764098	133764098	C	T	SNP	TMEM71	ENST00000356838	human	ensembl	69_37n	-1	known	missense	c.247	p.D83N	0.923	NULL	NULL	-	no_errors	TMEM71	HGNC	ENSG00000165071	277	0	0.00	281	620	68.74	-	-	-
TTLL3	0	genome.wustl.edu	37	3	9859333	9859333	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	9859333	9859333	G	T	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	+1	known	missense	c.749	p.G250V	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	98	0	0.00	95	60	38.71	-	-	-
XPNPEP2	0	genome.wustl.edu	37	X	128887190	128887190	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	X	128887190	128887190	A	G	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	+1	known	missense	c.1073	p.N358S	1.000	superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	171	0	0.00	147	48	24.62	-	-	-
ZNF354B	0	genome.wustl.edu	37	5	178310408	178310408	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	178310408	178310408	A	C	SNP	ZNF354B	ENST00000322434	human	ensembl	69_37n	+1	known	missense	c.955	p.I319L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338	183	0	0.00	122	65	34.76	-	-	-
