Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABL2	0	genome.wustl.edu	37	1	179078567	179078567	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	1	179078567	179078567	C	T	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	missense	c.1835	p.R612K	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	52	0	0.00	16	12	42.86	-	-	-
AFG3L2	0	genome.wustl.edu	37	18	12329635	12329635	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	18	12329635	12329635	C	T	SNP	AFG3L2	ENST00000269143	human	ensembl	69_37n	-1	known	missense	c.2323	p.G775S	1.000	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	AFG3L2	HGNC	ENSG00000141385	171	0	0.00	49	30	37.97	-	-	-
ARHGEF18	0	genome.wustl.edu	37	19	7504982	7504982	+	Silent	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	7504982	7504982	C	T	SNP	ARHGEF18	ENST00000359920	human	ensembl	69_37n	+1	known	silent	c.156	p.G52	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880	9	0	0.00	15	16	51.61	-	-	-
CABS1	0	genome.wustl.edu	37	4	71200897	71200897	+	Silent	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	4	71200897	71200897	C	T	SNP	CABS1	ENST00000273936	human	ensembl	69_37n	+1	known	silent	c.141	p.H47	0.095	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309	86	0	0.00	65	70	51.85	-	-	-
CIRH1A	0	genome.wustl.edu	37	16	69184739	69184739	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	16	69184739	69184739	C	T	SNP	CIRH1A	ENST00000314423	human	ensembl	69_37n	+1	known	missense	c.934	p.R312C	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	115	0	0.00	51	26	33.77	-	-	-
COL5A1	0	genome.wustl.edu	37	9	137591855	137591855	+	Silent	SNP	G	G	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	9	137591855	137591855	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	+1	known	silent	c.378	p.Q126	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	16	0	0.00	6	4	40.00	-	-	-
DMTF1	0	genome.wustl.edu	37	7	86811354	86811354	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	7	86811354	86811354	T	-	DEL	DMTF1	ENST00000394702	human	ensembl	69_37n	+1	known	frame_shift_del	c.732	p.F247fs	1.000	NULL	NULL	-	no_errors	DMTF1	HGNC	ENSG00000135164	8	0	0.00	5	3	37.50	-	-	-
DNASE1L3	0	genome.wustl.edu	37	3	58190568	58190568	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	3	58190568	58190568	C	T	SNP	DNASE1L3	ENST00000318316	human	ensembl	69_37n	-1	known	missense	c.361	p.D121N	0.983	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L3	HGNC	ENSG00000163687	126	0	0.00	83	34	29.06	-	-	-
FAM47C	0	genome.wustl.edu	37	X	37027222	37027222	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	37027222	37027222	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	+1	known	missense	c.739	p.R247C	0.090	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	162	1	0.61	24	13	35.14	-	-	-
GALNT12	0	genome.wustl.edu	37	9	101589095	101589095	+	Silent	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	9	101589095	101589095	C	T	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	+1	known	silent	c.603	p.R201	0.133	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	93	0	0.00	136	94	40.87	-	-	-
GYS1	0	genome.wustl.edu	37	19	49472669	49472669	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	49472669	49472669	G	A	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.2090	p.A697V	0.993	NULL	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	18	0	0.00	10	8	44.44	-	-	-
IFI35	0	genome.wustl.edu	37	17	41164295	41164295	+	Splice_Site	SNP	G	G	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	17	41164295	41164295	G	A	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	+1	known	splice_site	c.120+1	e2+1	0.992	-	-	-	no_errors	IFI35	HGNC	ENSG00000068079	93	0	0.00	56	27	32.53	-	-	-
IGHV3-30	0	genome.wustl.edu	37	14	106791268	106791268	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	14	106791268	106791268	C	T	SNP	IGHV3-30	ENST00000390613	human	ensembl	69_37n	-1	known	missense	c.88	p.V30M	0.145	pfam_Ig_V-set	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGHV3-30	HGNC	ENSG00000211953	290	0	0.00	54	20	27.03	-	-	-
IKBKB	0	genome.wustl.edu	37	8	42178341	42178342	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	8	42178341	42178342	-	G	INS	IKBKB	ENST00000520810	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1667_1668	p.T559fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	55	0	0.00	24	4	14.29	-	-	-
IQCA1	0	genome.wustl.edu	37	2	237308121	237308121	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	2	237308121	237308121	T	G	SNP	IQCA1	ENST00000409907	human	ensembl	69_37n	-1	known	missense	c.1145	p.E382A	0.289	NULL	pfam_ATPase_AAA_core,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	244	0	0.00	91	74	44.85	-	-	-
ITSN2	0	genome.wustl.edu	37	2	24531572	24531572	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	2	24531572	24531572	G	A	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.707	p.S236L	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	114	0	0.00	93	66	41.25	-	-	-
KIAA0226	0	genome.wustl.edu	37	3	197427914	197427915	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	3	197427914	197427915	-	G	INS	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	frame_shift_ins	c.831_830	p.V278fs	0.000:0.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	31	0	0.00	10	3	23.08	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1269750	1269750	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	11	1269750	1269750	C	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	frame_shift_del	c.11649	p.P3884fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	60	0	0.00	17	2	10.53	-	-	-
NEDD4L	0	genome.wustl.edu	37	18	55990551	55990551	+	Silent	SNP	G	G	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	18	55990551	55990551	G	A	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	+1	known	silent	c.498	p.Q166	0.998	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	165	1	0.60	89	56	38.62	-	-	-
PHF3	0	genome.wustl.edu	37	6	64395792	64395793	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	64395792	64395793	-	A	INS	PHF3	ENST00000262043	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2169_2170	p.P725fs	1.000:1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	12	0	0.00	10	2	16.67	-	-	-
PIM2	0	genome.wustl.edu	37	X	48772372	48772372	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	48772372	48772372	G	A	SNP	PIM2	ENST00000376509	human	ensembl	69_37n	-1	known	missense	c.520	p.R174C	0.121	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM2	HGNC	ENSG00000102096	56	0	0.00	94	60	38.96	-	-	-
PIP5K1C	0	genome.wustl.edu	37	19	3633459	3633460	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	3633459	3633460	-	G	INS	PIP5K1C	ENST00000335312	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1980_1979	p.A661fs	0.922:0.997	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	8	0	0.00	4	2	33.33	-	-	-
PRAM1	0	genome.wustl.edu	37	19	8564392	8564393	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	8564392	8564393	-	C	INS	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.300_299	p.T101fs	0.001:0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	18	0	0.00	4	2	33.33	-	-	-
PRAM1	0	genome.wustl.edu	37	19	8564394	8564395	+	Frame_Shift_Ins	INS	-	-	CAAA			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	8564394	8564395	-	CAAA	INS	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.298_297	p.V99fs	0.000:0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	18	0	0.00	4	2	33.33	-	-	-
PRRG3	0	genome.wustl.edu	37	X	150869296	150869297	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	150869296	150869297	-	G	INS	PRRG3	ENST00000370353	human	ensembl	69_37n	+1	known	frame_shift_ins	c.487_488	p.R166fs	0.000:0.000	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	48	0	0.00	31	5	13.89	-	-	-
RAB3GAP2	0	genome.wustl.edu	37	1	220325077	220325077	+	Silent	SNP	G	G	C			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	1	220325077	220325077	G	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	silent	c.3897	p.V1299	0.956	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	99	0	0.00	65	50	43.48	-	-	-
RAI1	0	genome.wustl.edu	37	17	17697697	17697697	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	17	17697697	17697697	C	T	SNP	RAI1	ENST00000353383	human	ensembl	69_37n	+1	known	nonsense	c.1435	p.Q479*	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	9	0	0.00	9	7	43.75	-	-	-
RICTOR	0	genome.wustl.edu	37	5	38952359	38952359	+	Silent	SNP	T	T	C			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	5	38952359	38952359	T	C	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	silent	c.3066	p.L1022	0.123	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	117	0	0.00	65	46	41.44	-	-	-
RPS6KA1	0	genome.wustl.edu	37	1	26885310	26885311	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	1	26885310	26885311	-	C	INS	RPS6KA1	ENST00000531382	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1124_1125	p.S378fs	1.000:0.993	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	26	0	0.00	12	3	20.00	-	-	-
RREB1	0	genome.wustl.edu	37	6	7247180	7247181	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	7247180	7247181	-	C	INS	RREB1	ENST00000379938	human	ensembl	69_37n	+1	known	frame_shift_ins	c.4497_4498	p.E1501fs	0.080:0.159	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	12	0	0.00	13	2	13.33	-	-	-
RTF1	0	genome.wustl.edu	37	15	41770786	41770788	+	In_Frame_Del	DEL	TTA	TTA	-			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	TTA	TTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	15	41770786	41770788	TTA	-	DEL	RTF1	ENST00000389629	human	ensembl	69_37n	+1	known	in_frame_del	c.1781_1783	p.FT594in_frame_delS	1.000:0.972:1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	123	0	0.00	148	354	61.89	-	-	-
RTF1	0	genome.wustl.edu	37	15	41770809	41770809	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	15	41770809	41770809	A	-	DEL	RTF1	ENST00000389629	human	ensembl	69_37n	+1	known	frame_shift_del	c.1804	p.T602fs	1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	123	0	0.00	142	256	64.16	-	-	-
SOBP	0	genome.wustl.edu	37	6	107955025	107955025	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	107955025	107955025	C	T	SNP	SOBP	ENST00000317357	human	ensembl	69_37n	+1	known	missense	c.977	p.P326L	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320	51	0	0.00	22	29	56.86	-	-	-
SPACA1	0	genome.wustl.edu	37	6	88769255	88769255	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	88769255	88769255	G	T	SNP	SPACA1	ENST00000237201	human	ensembl	69_37n	+1	known	missense	c.559	p.D187Y	0.764	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434	105	0	0.00	60	38	38.78	-	-	-
TMIGD2	0	genome.wustl.edu	37	19	4292606	4292606	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	4292606	4292606	C	-	DEL	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	frame_shift_del	c.839	p.G280fs	0.002	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	31	0	0.00	10	2	16.67	-	-	-
TTN	0	genome.wustl.edu	37	2	179499272	179499272	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	2	179499272	179499272	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34532	p.R11511Q	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	29	0	0.00	18	23	56.10	-	-	-
WBSCR22	0	genome.wustl.edu	37	7	73107983	73107983	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	7	73107983	73107983	C	T	SNP	WBSCR22	ENST00000265758	human	ensembl	69_37n	+1	known	missense	c.626	p.S209L	0.768	pfam_Unchr_MeTrfase_Williams-Beuren	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462	622	1	0.16	242	129	34.77	-	-	-
ZCCHC5	0	genome.wustl.edu	37	X	77913883	77913883	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	77913883	77913883	A	C	SNP	ZCCHC5	ENST00000321110	human	ensembl	69_37n	-1	known	missense	c.35	p.L12R	0.999	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300	66	0	0.00	41	38	48.10	-	-	-
