Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADHFE1	0	genome.wustl.edu	37	8	67356944	67356944	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	8	67356944	67356944	C	T	SNP	ADHFE1	ENST00000396623	human	ensembl	69_37n	+1	known	missense	c.314	p.T105M	1.000	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576	338	2	0.59	344	128	27.12	-	-	-
AGGF1	0	genome.wustl.edu	37	5	76358903	76358903	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	5	76358903	76358903	T	G	SNP	AGGF1	ENST00000312916	human	ensembl	69_37n	+1	known	missense	c.1971	p.H657Q	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252	202	0	0.00	235	73	23.70	-	-	-
AP4M1	0	genome.wustl.edu	37	7	99700554	99700554	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	7	99700554	99700554	C	G	SNP	AP4M1	ENST00000359593	human	ensembl	69_37n	+1	known	missense	c.322	p.L108V	0.998	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP4M1	HGNC	ENSG00000221838	188	1	0.53	141	55	28.06	-	-	-
CAD	0	genome.wustl.edu	37	2	27460602	27460602	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	2	27460602	27460602	C	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	+1	known	missense	c.4580	p.A1527D	1.000	pfam_Amidohydro_1	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	72	0	0.00	50	18	26.09	-	-	-
CCR3	0	genome.wustl.edu	37	3	46307328	46307328	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	46307328	46307328	C	-	DEL	CCR3	ENST00000545097	human	ensembl	69_37n	+1	known	frame_shift_del	c.742	p.L248fs	0.884	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR3,prints_Chemokine_CCR1,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1,prints_P2_purnocptor	-	no_errors	CCR3	HGNC	ENSG00000183625	280	0	0.00	203	54	20.38	-	-	-
FLG	0	genome.wustl.edu	37	1	152276139	152276139	+	Silent	SNP	C	C	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	1	152276139	152276139	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.11223	p.Q3741	0.009	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	496	3	0.60	509	134	20.81	-	-	-
FLNB	0	genome.wustl.edu	37	3	58097580	58097582	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	58097580	58097582	GGC	-	DEL	FLNB	ENST00000295956	human	ensembl	69_37n	+1	known	in_frame_del	c.2547_2549	p.A850in_frame_del	1.000:1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	165	0	0.00	128	35	21.08	-	-	-
GRIK4	0	genome.wustl.edu	37	11	120833362	120833362	+	Silent	SNP	C	C	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	11	120833362	120833362	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	69_37n	+1	known	silent	c.2238	p.T746	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	107	0	0.00	79	21	21.00	-	-	-
KIAA1109	0	genome.wustl.edu	37	4	123156157	123156157	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	123156157	123156157	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	+1	known	missense	c.3553	p.E1185K	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	222	0	0.00	133	26	16.35	-	-	-
KPNA4	0	genome.wustl.edu	37	3	160283041	160283041	+	Silent	SNP	T	T	C			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	160283041	160283041	T	C	SNP	KPNA4	ENST00000334256	human	ensembl	69_37n	-1	known	silent	c.30	p.Q10	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold,pfscan_Importin-a_IBB	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA4	HGNC	ENSG00000186432	139	0	0.00	142	44	23.66	-	-	-
MFSD8	0	genome.wustl.edu	37	4	128854182	128854182	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	128854182	128854182	A	G	SNP	MFSD8	ENST00000296468	human	ensembl	69_37n	-1	known	missense	c.821	p.V274A	0.929	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073	413	0	0.00	371	48	11.46	-	-	-
PDE9A	0	genome.wustl.edu	37	21	44182234	44182234	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	21	44182234	44182234	A	G	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	+1	known	missense	c.1127	p.N376S	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	95	0	0.00	85	32	27.35	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	203	1	0.49	194	78	28.68	-	-	-
PNMA2	0	genome.wustl.edu	37	8	26365461	26365461	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	8	26365461	26365461	G	A	SNP	PNMA2	ENST00000522362	human	ensembl	69_37n	-1	known	missense	c.811	p.R271W	0.023	pfam_Retrotrans_gag	pfam_Retrotrans_gag	-	no_errors	PNMA2	HGNC	ENSG00000240694	128	0	0.00	105	25	19.23	-	-	-
PPP3CA	0	genome.wustl.edu	37	4	102117231	102117231	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	102117231	102117231	A	G	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	missense	c.101	p.V34A	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	356	1	0.28	348	54	13.37	-	-	-
TYR	0	genome.wustl.edu	37	11	89018003	89018003	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	11	89018003	89018003	C	T	SNP	TYR	ENST00000263321	human	ensembl	69_37n	+1	known	missense	c.1247	p.A416V	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	176	0	0.00	181	66	26.72	-	-	-
