Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C1orf112	0	genome.wustl.edu	37	1	169770068	169770068	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	169770068	169770068	C	A	SNP	C1orf112	ENST00000286031	human	ensembl	69_37n	+1	known	missense	c.22	p.H8N	0.997	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460	43	0	0.00	33	19	35.85	-	-	-
CCDC136	0	genome.wustl.edu	37	7	128455958	128455958	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	128455958	128455958	C	T	SNP	CCDC136	ENST00000494552	human	ensembl	69_37n	+1	novel	missense	c.2966	p.T989I	0.976	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC136	HGNC	ENSG00000128596	73	0	0.00	68	11	13.92	-	-	-
CCDC19	0	genome.wustl.edu	37	1	159858227	159858227	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	159858227	159858227	C	A	SNP	CCDC19	ENST00000368099	human	ensembl	69_37n	-1	known	missense	c.332	p.R111L	0.954	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085	55	0	0.00	68	56	44.44	-	-	-
CDK3	0	genome.wustl.edu	37	17	73998015	73998015	+	Silent	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	17	73998015	73998015	G	A	SNP	CDK3	ENST00000425876	human	ensembl	69_37n	+1	known	silent	c.177	p.K59	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK3	HGNC	ENSG00000250506	49	0	0.00	68	43	38.74	-	-	-
CNTNAP3B	0	genome.wustl.edu	37	9	43876040	43876040	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	9	43876040	43876040	C	A	SNP	CNTNAP3B	ENST00000377564	human	ensembl	69_37n	+1	known	missense	c.2132	p.S711Y	0.997	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529	26	0	0.00	28	5	15.15	-	-	-
CWC27	0	genome.wustl.edu	37	5	64081367	64081367	+	Silent	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	5	64081367	64081367	C	T	SNP	CWC27	ENST00000381070	human	ensembl	69_37n	+1	known	silent	c.456	p.D152	0.588	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015	71	0	0.00	90	13	12.62	-	-	-
DICER1	0	genome.wustl.edu	37	14	95562728	95562728	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	14	95562728	95562728	C	T	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.4529	p.C1510Y	1.000	pfam_RNase_III_dom,superfamily_RNase_III_dom,smart_RNase_III_dom	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	42	0	0.00	53	41	43.62	-	-	-
DMRTB1	0	genome.wustl.edu	37	1	53927225	53927225	+	Silent	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	53927225	53927225	G	A	SNP	DMRTB1	ENST00000371445	human	ensembl	69_37n	+1	known	silent	c.657	p.P219	0.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006	27	0	0.00	42	16	27.59	-	-	-
EXOSC7	0	genome.wustl.edu	37	3	45030632	45030632	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	3	45030632	45030632	G	A	SNP	EXOSC7	ENST00000265564	human	ensembl	69_37n	+1	known	missense	c.58	p.E20K	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914	132	0	0.00	187	23	10.90	-	-	-
FAM122B	0	genome.wustl.edu	37	X	133923130	133923130	+	Silent	SNP	A	A	G			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	133923130	133923130	A	G	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	silent	c.318	p.D106	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	85	0	0.00	91	80	46.78	-	-	-
FAM188B	0	genome.wustl.edu	37	7	30876302	30876302	+	Silent	SNP	A	A	G			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	30876302	30876302	A	G	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	+1	known	silent	c.1161	p.E387	0.988	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	107	0	0.00	122	80	39.60	-	-	-
FURIN	0	genome.wustl.edu	37	15	91422703	91422703	+	Silent	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	91422703	91422703	G	A	SNP	FURIN	ENST00000268171	human	ensembl	69_37n	+1	known	silent	c.1083	p.T361	0.481	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564	26	0	0.00	24	19	44.19	-	-	-
GBP1	0	genome.wustl.edu	37	1	89524918	89524918	+	RNA	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	89524918	89524918	C	T	SNP	GBP1	ENST00000493139	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GBP1	HGNC	ENSG00000117228	71	0	0.00	66	35	34.65	-	-	-
HEG1	0	genome.wustl.edu	37	3	124739694	124739694	+	Missense_Mutation	SNP	T	T	G			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	3	124739694	124739694	T	G	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.1194	p.E398D	0.075	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	63	0	0.00	101	23	18.55	-	-	-
IRF7	0	genome.wustl.edu	37	11	615281	615281	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	615281	615281	G	A	SNP	IRF7	ENST00000330243	human	ensembl	69_37n	-1	known	missense	c.38	p.S13F	0.000	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF7	HGNC	ENSG00000185507	8	0	0.00	4	5	55.56	-	-	-
KLC2	0	genome.wustl.edu	37	11	66033219	66033219	+	Silent	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66033219	66033219	C	T	SNP	KLC2	ENST00000316924	human	ensembl	69_37n	+1	known	silent	c.1428	p.S476	0.992	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	13	0	0.00	25	9	25.71	-	-	-
LONRF3	0	genome.wustl.edu	37	X	118140133	118140133	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	118140133	118140133	A	G	SNP	LONRF3	ENST00000371628	human	ensembl	69_37n	+1	known	missense	c.1465	p.K489E	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF3	HGNC	ENSG00000175556	122	0	0.00	153	84	35.15	-	-	-
MAGED1	0	genome.wustl.edu	37	X	51638615	51638615	+	Missense_Mutation	SNP	A	A	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	51638615	51638615	A	T	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	+1	known	missense	c.680	p.D227V	0.939	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	66	0	0.00	109	15	11.90	-	-	-
MUC12	0	genome.wustl.edu	37	7	100643088	100643088	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	100643088	100643088	A	G	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.9673	p.I3225V	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	32	0	0.00	42	8	16.00	-	-	-
NEB	0	genome.wustl.edu	37	2	152483718	152483718	+	Missense_Mutation	SNP	T	T	C			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	2	152483718	152483718	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.10145	p.N3382S	0.958	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	102	0	0.00	108	43	28.48	-	-	-
OSBPL9	0	genome.wustl.edu	37	1	52222005	52222005	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	52222005	52222005	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	69_37n	+1	known	missense	c.611	p.A204V	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	78	0	0.00	72	9	11.11	-	-	-
PCSK5	0	genome.wustl.edu	37	9	78790192	78790192	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	9	78790192	78790192	C	G	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	+1	known	missense	c.2047	p.R683G	0.006	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	11	0	0.00	13	6	31.58	-	-	-
PKD1	0	genome.wustl.edu	37	16	2143858	2143858	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	2143858	2143858	C	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.10775	p.S3592I	0.995	prints_PKD_1	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	23	0	0.00	12	10	45.45	-	-	-
PPFIA1	0	genome.wustl.edu	37	11	70224272	70224272	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	70224272	70224272	C	T	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	+1	known	missense	c.3521	p.S1174F	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	83	0	0.00	347	55	13.68	-	-	-
PTEN	0	genome.wustl.edu	37	10	89624272	89624273	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	10	89624272	89624273	-	A	INS	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	frame_shift_ins	c.46_47	p.Y16fs	1.000:1.000	pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	124	0	0.00	39	84	68.29	-	-	-
PTPRB	0	genome.wustl.edu	37	12	70928673	70928673	+	Silent	SNP	C	C	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	12	70928673	70928673	C	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.6144	p.L2048	0.998	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	31	0	0.00	44	22	33.33	-	-	-
RAB1B	0	genome.wustl.edu	37	11	66039643	66039643	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66039643	66039643	G	A	SNP	RAB1B	ENST00000311481	human	ensembl	69_37n	+1	known	missense	c.103	p.E35K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903	48	0	0.00	257	55	17.63	-	-	-
SCN8A	0	genome.wustl.edu	37	12	52188168	52188168	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	12	52188168	52188168	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	+1	known	missense	c.4538	p.G1513E	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	90	0	0.00	106	61	36.53	-	-	-
SLC17A2	0	genome.wustl.edu	37	6	25921519	25921520	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	6	25921519	25921520	-	T	INS	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	frame_shift_ins	c.362_361	p.M121fs	0.956:0.558	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	91	0	0.00	91	54	37.24	-	-	-
SLC25A43	0	genome.wustl.edu	37	X	118586830	118586830	+	Missense_Mutation	SNP	A	A	C			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	118586830	118586830	A	C	SNP	SLC25A43	ENST00000336249	human	ensembl	69_37n	+1	known	missense	c.655	p.S219R	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713	69	0	0.00	66	11	14.29	-	-	-
SPATA13	0	genome.wustl.edu	37	13	24860370	24860370	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	13	24860370	24860370	G	T	SNP	SPATA13	ENST00000382108	human	ensembl	69_37n	+1	known	missense	c.2320	p.V774L	0.962	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957	29	0	0.00	9	23	69.70	-	-	-
TECTA	0	genome.wustl.edu	37	11	120996488	120996488	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	120996488	120996488	G	A	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	+1	known	missense	c.1681	p.G561S	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	41	0	0.00	14	39	73.58	-	-	-
TRAF7	0	genome.wustl.edu	37	16	2225153	2225153	+	Splice_Site	SNP	T	T	C			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	2225153	2225153	T	C	SNP	TRAF7	ENST00000326181	human	ensembl	69_37n	+1	known	splice_site	c.1386+2	e14+2	1.000	-	-	-	no_errors	TRAF7	HGNC	ENSG00000131653	70	0	0.00	59	53	47.32	-	-	-
UBXN11	0	genome.wustl.edu	37	1	26608890	26608891	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	26608890	26608891	CC	-	DEL	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	frame_shift_del	c.1463_1462	p.G488fs	0.001:0.001	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	8	0	0.00	9	4	30.77	-	-	-
VPS13C	0	genome.wustl.edu	37	15	62283988	62283988	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	62283988	62283988	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.1367	p.G456E	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	86	0	0.00	125	51	28.81	-	-	-
WFDC2	0	genome.wustl.edu	37	20	44108628	44108628	+	Silent	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	20	44108628	44108628	C	T	SNP	WFDC2	ENST00000372676	human	ensembl	69_37n	+1	known	silent	c.270	p.L90	0.032	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC2	HGNC	ENSG00000101443	63	0	0.00	74	43	36.44	-	-	-
ZNF236	0	genome.wustl.edu	37	18	74625749	74625749	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	18	74625749	74625749	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	+1	known	nonsense	c.2950	p.Q984*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	56	0	0.00	68	49	41.88	-	-	-
