Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AR	0	genome.wustl.edu	37	X	66765081	66765081	+	Silent	SNP	C	C	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	X	66765081	66765081	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	+1	known	silent	c.93	p.R31	1.000	pfam_Andrgn_rcpt,prints_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	31	0	0.00	27	9	25.00	-	-	-
ATM	0	genome.wustl.edu	37	11	108121488	108121488	+	Silent	SNP	G	G	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	11	108121488	108121488	G	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	+1	known	silent	c.1296	p.L432	0.015	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	29	0	0.00	24	11	31.43	-	-	-
CDH1	0	genome.wustl.edu	37	16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	29	0	0.00	7	10	58.82	-	-	-
FAT2	0	genome.wustl.edu	37	5	150924228	150924228	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	5	150924228	150924228	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	nonsense	c.6460	p.Q2154*	0.020	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	22	0	0.00	22	11	33.33	-	-	-
FKBP8	0	genome.wustl.edu	37	19	18650372	18650372	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	19	18650372	18650372	C	A	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.538	p.D180Y	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	13	0	0.00	14	8	36.36	-	-	-
ITGB3BP	0	genome.wustl.edu	37	1	63920077	63920077	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	1	63920077	63920077	C	G	SNP	ITGB3BP	ENST00000371092	human	ensembl	69_37n	-1	known	missense	c.518	p.R173T	0.995	pfam_NRIF3_coact_rcpt	pfam_NRIF3_coact_rcpt	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	140	1	0.71	115	35	23.33	-	-	-
KCNMA1	0	genome.wustl.edu	37	10	78943191	78943191	+	Nonsense_Mutation	SNP	T	T	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	10	78943191	78943191	T	A	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	nonsense	c.796	p.R266*	1.000	pfam_Ion_trans_dom	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	29	0	0.00	28	11	28.21	-	-	-
MCL1	0	genome.wustl.edu	37	1	150551359	150551359	+	Silent	SNP	A	A	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	1	150551359	150551359	A	T	SNP	MCL1	ENST00000369026	human	ensembl	69_37n	-1	known	silent	c.648	p.V216	0.600	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Apop_reg_Mc1,prints_Bcl2_BH	-	no_errors	MCL1	HGNC	ENSG00000143384	24	0	0.00	26	9	25.71	-	-	-
MLL5	0	genome.wustl.edu	37	7	104719345	104719345	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	7	104719345	104719345	G	T	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	+1	known	missense	c.1183	p.V395F	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	156	0	0.00	160	75	31.91	-	-	-
NPHS1	0	genome.wustl.edu	37	19	36321761	36321761	+	Silent	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	19	36321761	36321761	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	silent	c.3579	p.Y1193	0.121	NULL	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	46	0	0.00	50	12	19.35	-	-	-
NXF5	0	genome.wustl.edu	37	X	101096721	101096721	+	Silent	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	X	101096721	101096721	G	A	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	silent	c.165	p.F55	0.987	pfam_Tap_RNA-bd	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	170	0	0.00	143	48	25.00	-	-	-
OR2T34	0	genome.wustl.edu	37	1	248737167	248737167	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	1	248737167	248737167	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	missense	c.892	p.R298C	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	26	0	0.00	37	10	21.28	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0.00	55	33	37.50	-	-	-
PPM1B	0	genome.wustl.edu	37	2	44429052	44429052	+	Silent	SNP	C	C	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	2	44429052	44429052	C	T	SNP	PPM1B	ENST00000282412	human	ensembl	69_37n	+1	known	silent	c.714	p.I238	0.985	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1B	HGNC	ENSG00000138032	75	0	0.00	83	28	25.23	-	-	-
RNF215	0	genome.wustl.edu	37	22	30775744	30775744	+	Missense_Mutation	SNP	A	A	T			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	22	30775744	30775744	A	T	SNP	RNF215	ENST00000382363	human	ensembl	69_37n	-1	known	missense	c.1067	p.L356Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF215	HGNC	ENSG00000099999	48	0	0.00	26	21	44.68	-	-	-
SAT2	0	genome.wustl.edu	37	17	7531048	7531048	+	RNA	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	17	7531048	7531048	G	A	SNP	SAT2	ENST00000380466	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAT2	HGNC	ENSG00000141504	11	0	0.00	5	7	58.33	-	-	-
STK31	0	genome.wustl.edu	37	7	23792363	23792363	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	7	23792363	23792363	A	G	SNP	STK31	ENST00000355870	human	ensembl	69_37n	+1	known	missense	c.1045	p.T349A	0.999	NULL	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	80	0	0.00	75	32	29.91	-	-	-
ZFHX3	0	genome.wustl.edu	37	16	72832413	72832413	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	16	72832413	72832413	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.4168	p.Q1390*	1.000	pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	100	0	0.00	40	51	56.04	-	-	-
