Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AHNAK	0	genome.wustl.edu	37	11	62284554	62284554	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	62284554	62284554	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.17335	p.R5779C	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	171	0	0.00	111	47	29.75	-	-	-
ASCL3	0	genome.wustl.edu	37	11	8959451	8959451	+	Silent	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	8959451	8959451	G	A	SNP	ASCL3	ENST00000325884	human	ensembl	69_37n	-1	known	silent	c.258	p.C86	0.917	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ASCL3	HGNC	ENSG00000176009	144	0	0.00	88	53	37.59	-	-	-
BTD	0	genome.wustl.edu	37	3	15643051	15643051	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	15643051	15643051	C	A	SNP	BTD	ENST00000417015	human	ensembl	69_37n	+1	known	missense	c.140	p.A47E	0.000	NULL	NULL	-	no_errors	BTD	HGNC	ENSG00000169814	56	0	0.00	36	11	23.40	-	-	-
CACNA1A	0	genome.wustl.edu	37	19	13356070	13356070	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	13356070	13356070	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.4876	p.R1626C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	108	0	0.00	77	37	32.46	-	-	-
CCP110	0	genome.wustl.edu	37	16	19548275	19548275	+	Silent	SNP	A	A	G			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	19548275	19548275	A	G	SNP	CCP110	ENST00000381396	human	ensembl	69_37n	+1	known	silent	c.1284	p.L428	0.023	NULL	NULL	-	no_errors	CCP110	HGNC	ENSG00000103540	230	0	0.00	148	77	34.22	-	-	-
CLEC18A	0	genome.wustl.edu	37	16	69985383	69985383	+	Silent	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	69985383	69985383	G	A	SNP	CLEC18A	ENST00000449317	human	ensembl	69_37n	+1	known	silent	c.114	p.P38	0.000	superfamily_CAP_domain	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18A	HGNC	ENSG00000157322	62	0	0.00	29	4	12.12	-	-	-
CPT1B	0	genome.wustl.edu	37	22	51009679	51009679	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	22	51009679	51009679	T	C	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	missense	c.1783	p.R595G	0.984	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	131	0	0.00	67	54	44.63	-	-	-
HLA-J	0	genome.wustl.edu	37	6	29976024	29976024	+	RNA	SNP	C	C	G			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	29976024	29976024	C	G	SNP	HLA-J	ENST00000462773	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622	20	0	0.00	24	5	17.24	-	-	-
KIAA0240	0	genome.wustl.edu	37	6	42832565	42832565	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	42832565	42832565	A	C	SNP	KIAA0240	ENST00000314073	human	ensembl	69_37n	+1	known	missense	c.2621	p.N874T	0.975	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	147	0	0.00	116	53	31.36	-	-	-
LPHN2	0	genome.wustl.edu	37	1	82409015	82409015	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	1	82409015	82409015	T	C	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	+1	known	missense	c.760	p.S254P	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	210	0	0.00	122	63	34.05	-	-	-
LRRC15	0	genome.wustl.edu	37	3	194080956	194080956	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	194080956	194080956	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	missense	c.835	p.R279C	0.955	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	524	0	0.00	357	219	37.95	-	-	-
MAGEA3	0	genome.wustl.edu	37	X	151936112	151936112	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	151936112	151936112	G	A	SNP	MAGEA3	ENST00000370278	human	ensembl	69_37n	-1	known	nonsense	c.55	p.R19*	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867	19	0	0.00	10	4	28.57	-	-	-
MTRF1L	0	genome.wustl.edu	37	6	153315705	153315705	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	153315705	153315705	C	G	SNP	MTRF1L	ENST00000367233	human	ensembl	69_37n	-1	known	missense	c.630	p.K210N	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1L	HGNC	ENSG00000112031	393	2	0.50	278	131	32.03	-	-	-
MUC16	0	genome.wustl.edu	37	19	9069332	9069332	+	Silent	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	9069332	9069332	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.18114	p.H6038	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	324	1	0.31	203	85	29.41	-	-	-
MYO7A	0	genome.wustl.edu	37	11	76893500	76893500	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	76893500	76893500	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	+1	known	missense	c.3140	p.R1047H	0.976	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	59	0	0.00	105	21	16.54	-	-	-
NAALADL2	0	genome.wustl.edu	37	3	174974237	174974237	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	174974237	174974237	A	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	+1	known	missense	c.857	p.D286V	0.997	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	175	0	0.00	134	38	21.97	-	-	-
NMRK2	0	genome.wustl.edu	37	19	3942216	3942216	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	3942216	3942216	G	A	SNP	NMRK2	ENST00000168977	human	ensembl	69_37n	+1	known	missense	c.638	p.R213H	0.000	NULL	NULL	-	no_errors	NMRK2	HGNC	ENSG00000077009	14	0	0.00	9	7	43.75	-	-	-
NPAS4	0	genome.wustl.edu	37	11	66188712	66188712	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	66188712	66188712	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	+1	known	missense	c.62	p.R21Q	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	27	0	0.00	18	5	21.74	-	-	-
NPSR1-AS1	0	genome.wustl.edu	37	7	34873776	34873776	+	RNA	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	7	34873776	34873776	G	A	SNP	NPSR1-AS1	ENST00000436945	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NPSR1-AS1	HGNC	ENSG00000197085	14	0	0.00	3	4	57.14	-	-	-
OR11H1	0	genome.wustl.edu	37	22	16449768	16449769	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	22	16449768	16449769	-	A	INS	OR11H1	ENST00000252835	human	ensembl	69_37n	-1	known	frame_shift_ins	c.37_36	p.N12fs	0.999:1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538	107	0	0.00	112	26	18.84	-	-	-
PCDH11X	0	genome.wustl.edu	37	X	91133194	91133194	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	91133194	91133194	C	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	+1	known	nonsense	c.1955	p.S652*	0.951	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	117	0	0.00	71	46	39.32	-	-	-
PDE3A	0	genome.wustl.edu	37	12	20522503	20522503	+	Silent	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	20522503	20522503	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	+1	known	silent	c.285	p.A95	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	12	0	0.00	9	4	30.77	-	-	-
PIK3R1	0	genome.wustl.edu	37	5	67589601	67589602	+	In_Frame_Ins	INS	-	-	GTT			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	5	67589601	67589602	-	GTT	INS	PIK3R1	ENST00000396611	human	ensembl	69_37n	+1	known	in_frame_ins	c.1364_1365	p.456in_frame_insL	1.000:1.000	superfamily_Guanylate-bd_C	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	136	0	0.00	107	67	38.51	-	-	-
PLEKHA1	0	genome.wustl.edu	37	10	124177438	124177438	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	10	124177438	124177438	A	G	SNP	PLEKHA1	ENST00000368990	human	ensembl	69_37n	+1	known	missense	c.635	p.Y212C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679	166	0	0.00	44	40	47.62	-	-	-
PLOD3	0	genome.wustl.edu	37	7	100854922	100854922	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	7	100854922	100854922	C	T	SNP	PLOD3	ENST00000440925	human	ensembl	69_37n	-1	known	missense	c.146	p.S49N	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLOD3	HGNC	ENSG00000106397	19	0	0.00	15	9	37.50	-	-	-
RAD18	0	genome.wustl.edu	37	3	8983486	8983486	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	8983486	8983486	T	A	SNP	RAD18	ENST00000264926	human	ensembl	69_37n	-1	known	missense	c.269	p.N90I	1.000	NULL	pfam_SAP_DNA-bd,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_DNA-bd,pfscan_Znf_RING,pfscan_SAP_DNA-bd	-	no_errors	RAD18	HGNC	ENSG00000070950	199	0	0.00	140	78	35.78	-	-	-
RASSF2	0	genome.wustl.edu	37	20	4771137	4771137	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	20	4771137	4771137	C	T	SNP	RASSF2	ENST00000379376	human	ensembl	69_37n	-1	known	missense	c.497	p.R166H	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF2	HGNC	ENSG00000101265	115	0	0.00	74	45	37.50	-	-	-
SLC9A7P1	0	genome.wustl.edu	37	12	98850195	98850195	+	RNA	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	98850195	98850195	C	T	SNP	SLC9A7P1	ENST00000554295	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.998	-	-	-	no_errors	SLC9A7P1	HGNC	ENSG00000227825	177	0	0.00	205	25	10.87	-	-	-
SNRK	0	genome.wustl.edu	37	3	43389153	43389153	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	43389153	43389153	C	T	SNP	SNRK	ENST00000296088	human	ensembl	69_37n	+1	known	missense	c.1402	p.R468C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SNRK	HGNC	ENSG00000163788	248	0	0.00	168	99	37.08	-	-	-
ST3GAL5	0	genome.wustl.edu	37	2	86073664	86073664	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	2	86073664	86073664	C	T	SNP	ST3GAL5	ENST00000377332	human	ensembl	69_37n	-1	known	missense	c.685	p.G229R	0.998	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL5	HGNC	ENSG00000115525	227	0	0.00	166	58	25.89	-	-	-
TAS2R43	0	genome.wustl.edu	37	12	11244166	11244166	+	Silent	SNP	G	G	C			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	11244166	11244166	G	C	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	silent	c.663	p.T221	0.185	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	55	0	0.00	63	28	30.77	-	-	-
TAS2R43	0	genome.wustl.edu	37	12	11244194	11244194	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	11244194	11244194	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	missense	c.635	p.H212R	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	56	0	0.00	61	31	33.70	-	-	-
U2AF1L4	0	genome.wustl.edu	37	19	36235431	36235431	+	Silent	SNP	A	A	G			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	36235431	36235431	A	G	SNP	U2AF1L4	ENST00000412391	human	ensembl	69_37n	-1	known	silent	c.210	p.S70	0.999	smart_RRM_dom_euk,pfscan_RRM_dom	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1L4	HGNC	ENSG00000161265	28	0	0.00	17	4	19.05	-	-	-
USP29	0	genome.wustl.edu	37	19	57640371	57640371	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	57640371	57640371	C	T	SNP	USP29	ENST00000254181	human	ensembl	69_37n	+1	known	missense	c.328	p.P110S	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	69	0	0.00	41	22	34.92	-	-	-
VPS18	0	genome.wustl.edu	37	15	41194898	41194898	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	15	41194898	41194898	C	G	SNP	VPS18	ENST00000220509	human	ensembl	69_37n	+1	known	missense	c.2281	p.R761G	1.000	pfam_Clathrin_H-chain/VPS_repeat	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	167	0	0.00	109	46	29.49	-	-	-
ZNF333	0	genome.wustl.edu	37	19	14830057	14830057	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	14830057	14830057	C	T	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	+1	known	missense	c.1918	p.H640Y	0.660	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	150	0	0.00	86	51	37.23	-	-	-
ZNF668	0	genome.wustl.edu	37	16	31075619	31075619	+	Silent	SNP	G	G	A			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	31075619	31075619	G	A	SNP	ZNF668	ENST00000426488	human	ensembl	69_37n	-1	known	silent	c.231	p.A77	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394	97	0	0.00	63	25	28.41	-	-	-
