Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARHGEF7	0	genome.wustl.edu	37	13	111953173	111953173	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	13	111953173	111953173	G	T	SNP	ARHGEF7	ENST00000370623	human	ensembl	69_37n	+1	known	missense	c.1997	p.G666V	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CH-domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	19	0	0.00	17	4	19.05	-	-	-
ATP10B	0	genome.wustl.edu	37	5	160097653	160097653	+	Silent	SNP	C	C	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	5	160097653	160097653	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.492	p.Q164	0.995	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	33	0	0.00	32	4	11.11	-	-	-
C21orf58	0	genome.wustl.edu	37	21	47722406	47722406	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	21	47722406	47722406	G	T	SNP	C21orf58	ENST00000291691	human	ensembl	69_37n	-1	known	missense	c.806	p.A269D	0.003	NULL	NULL	-	no_errors	C21orf58	HGNC	ENSG00000160298	35	0	0.00	32	4	11.11	-	-	-
DDX11L10	0	genome.wustl.edu	37	16	61730	61730	+	RNA	SNP	C	C	G			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	16	61730	61730	C	G	SNP	DDX11L10	ENST00000513886	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.342	-	-	-	no_errors	DDX11L10	HGNC	ENSG00000233614	11	0	0.00	4	7	63.64	-	-	-
DLGAP3	0	genome.wustl.edu	37	1	35370591	35370591	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	1	35370591	35370591	G	-	DEL	DLGAP3	ENST00000235180	human	ensembl	69_37n	-1	known	frame_shift_del	c.394	p.Q132fs	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	10	0	0.00	4	2	33.33	-	-	-
EIF4G1	0	genome.wustl.edu	37	3	184040637	184040638	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	3	184040637	184040638	-	A	INS	EIF4G1	ENST00000352767	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1845_1846	p.R617fs	1.000:1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	64	0	0.00	44	9	16.98	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	36	0	0.00	29	5	14.71	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	38	0	0.00	18	5	21.74	-	-	-
GRAMD1B	0	genome.wustl.edu	37	11	123484325	123484325	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	11	123484325	123484325	C	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	+1	known	missense	c.1757	p.P586L	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	27	0	0.00	28	5	15.15	-	-	-
IL27RA	0	genome.wustl.edu	37	19	14161654	14161654	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	19	14161654	14161654	G	T	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	+1	known	missense	c.1487	p.G496V	0.987	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	28	0	0.00	26	4	13.33	-	-	-
INTS1	0	genome.wustl.edu	37	7	1538684	1538684	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	7	1538684	1538684	G	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.1448	p.T483N	1.000	pfam_DUF3677	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	32	0	0.00	36	4	10.00	-	-	-
KCNS2	0	genome.wustl.edu	37	8	99440759	99440759	+	Silent	SNP	G	G	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	8	99440759	99440759	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	69_37n	+1	known	silent	c.552	p.V184	0.918	prints_K_chnl	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486	31	0	0.00	30	4	11.76	-	-	-
LINC00617	0	genome.wustl.edu	37	14	96389173	96389173	+	RNA	SNP	A	A	G			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	14	96389173	96389173	A	G	SNP	LINC00617	ENST00000503525	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00617	HGNC	ENSG00000250366	34	0	0.00	26	5	16.13	-	-	-
MAPT	0	genome.wustl.edu	37	17	44061292	44061292	+	Silent	SNP	C	C	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	17	44061292	44061292	C	A	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	+1	known	silent	c.1122	p.L374	1.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	42	0	0.00	62	7	10.14	-	-	-
MUC20	0	genome.wustl.edu	37	3	195345599	195345599	+	Silent	SNP	G	G	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	3	195345599	195345599	G	A	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	+1	known	silent	c.72	p.T24	0.014	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	13	0	0.00	3	3	50.00	-	-	-
NCOA6	0	genome.wustl.edu	37	20	33328866	33328866	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	20	33328866	33328866	A	T	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.5194	p.L1732M	0.439	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	63	0	0.00	57	13	18.57	-	-	-
NOTCH4	0	genome.wustl.edu	37	6	32169121	32169121	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	6	32169121	32169121	G	T	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.3912	p.S1304R	0.999	pirsf_Notch,prints_Notch_4	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	33	0	0.00	22	4	15.38	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	58	0	0.00	51	6	10.53	-	-	-
TPM3P9	0	genome.wustl.edu	37	19	53945215	53945215	+	RNA	SNP	G	G	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	19	53945215	53945215	G	A	SNP	TPM3P9	ENST00000424846	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	TPM3P9	HGNC	ENSG00000241015	20	0	0.00	21	4	16.00	-	-	-
TUBBP5	0	genome.wustl.edu	37	9	141070897	141070897	+	RNA	SNP	G	G	A			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	9	141070897	141070897	G	A	SNP	TUBBP5	ENST00000290377	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	29	0	0.00	27	6	18.18	-	-	-
