Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALS2CR11	0	genome.wustl.edu	37	2	202358909	202358909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	2	202358909	202358909	T	-	DEL	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	frame_shift_del	c.2155	p.S719fs	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	74	0	0.00	18	2	10.00	-	-	-
C2	0	genome.wustl.edu	37	6	31896624	31896624	+	Silent	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	31896624	31896624	G	A	SNP	C2	ENST00000299367	human	ensembl	69_37n	+1	known	silent	c.372	p.R124	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP	pfam_VWF_A,pfam_Peptidase_S1_S6,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C2	HGNC	ENSG00000166278	170	0	0.00	110	112	50.45	-	-	-
C9orf9	0	genome.wustl.edu	37	9	135763881	135763881	+	Silent	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	135763881	135763881	G	A	SNP	C9orf9	ENST00000356311	human	ensembl	69_37n	+1	known	silent	c.552	p.Q184	0.005	NULL	NULL	-	no_errors	C9orf9	HGNC	ENSG00000165698	13	0	0.00	12	4	25.00	-	-	-
CATSPERD	0	genome.wustl.edu	37	19	5744496	5744496	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	5744496	5744496	C	T	SNP	CATSPERD	ENST00000381624	human	ensembl	69_37n	+1	known	missense	c.632	p.A211V	0.012	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898	383	0	0.00	161	166	50.76	-	-	-
CCNB3	0	genome.wustl.edu	37	X	50037884	50037884	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	50037884	50037884	C	G	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	+1	known	missense	c.226	p.Q76E	0.004	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	351	0	0.00	175	171	49.42	-	-	-
CGA	0	genome.wustl.edu	37	6	87796031	87796031	+	Silent	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	87796031	87796031	C	T	SNP	CGA	ENST00000369582	human	ensembl	69_37n	-1	known	silent	c.210	p.T70	0.987	pfam_Glyco_hormone,smart_Glyco_hormone,pfscan_Glyco_hormone,prints_Glyco_hormone	pfam_Glyco_hormone,smart_Glyco_hormone,pfscan_Glyco_hormone,prints_Glyco_hormone	-	no_errors	CGA	HGNC	ENSG00000135346	264	0	0.00	165	97	37.02	-	-	-
CHD8	0	genome.wustl.edu	37	14	21859709	21859709	+	Silent	SNP	C	C	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	21859709	21859709	C	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	silent	c.6978	p.L2326	1.000	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	86	0	0.00	90	18	16.67	-	-	-
CLYBL	0	genome.wustl.edu	37	13	100518535	100518535	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	13	100518535	100518535	C	T	SNP	CLYBL	ENST00000339105	human	ensembl	69_37n	+1	known	missense	c.676	p.R226W	1.000	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	-	no_errors	CLYBL	HGNC	ENSG00000125246	140	0	0.00	93	74	44.31	-	-	-
CMTM5	0	genome.wustl.edu	37	14	23848056	23848056	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	23848056	23848056	G	T	SNP	CMTM5	ENST00000339180	human	ensembl	69_37n	+1	known	missense	c.458	p.C153F	0.009	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	21	0	0.00	11	9	45.00	-	-	-
DAZAP1	0	genome.wustl.edu	37	19	1430254	1430254	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	1430254	1430254	C	-	DEL	DAZAP1	ENST00000233078	human	ensembl	69_37n	+1	known	frame_shift_del	c.764	p.P257fs	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626	43	0	0.00	22	42	62.69	-	-	-
DMD	0	genome.wustl.edu	37	X	31152232	31152232	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	31152232	31152232	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.11001	p.F3667L	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	246	0	0.00	252	121	32.35	-	-	-
DUPD1	0	genome.wustl.edu	37	10	76818229	76818229	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	76818229	76818229	G	T	SNP	DUPD1	ENST00000338487	human	ensembl	69_37n	-1	known	nonsense	c.44	p.S15*	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUPD1	HGNC	ENSG00000188716	143	0	0.00	134	33	19.76	-	-	-
E2F1	0	genome.wustl.edu	37	20	32267640	32267640	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	20	32267640	32267640	G	A	SNP	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	missense	c.493	p.R165W	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	139	0	0.00	257	42	14.00	-	-	-
ERVFRD-1	0	genome.wustl.edu	37	6	11103979	11103979	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	11103979	11103979	G	T	SNP	ERVFRD-1	ENST00000472091	human	ensembl	69_37n	-1	known	missense	c.1565	p.T522K	0.003	NULL	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVFRD-1	HGNC	ENSG00000244476	111	0	0.00	52	33	38.82	-	-	-
FBXL3	0	genome.wustl.edu	37	13	77595895	77595895	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	13	77595895	77595895	C	G	SNP	FBXL3	ENST00000355619	human	ensembl	69_37n	-1	known	missense	c.101	p.C34S	0.014	superfamily_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like	-	no_errors	FBXL3	HGNC	ENSG00000005812	181	0	0.00	199	33	14.22	-	-	-
FCGR3B	0	genome.wustl.edu	37	1	161600164	161600164	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	161600164	161600164	G	T	SNP	FCGR3B	ENST00000421702	human	ensembl	69_37n	-1	putative	missense	c.119	p.A40E	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FCGR3B	HGNC	ENSG00000162747	72	0	0.00	132	59	30.89	-	-	-
HRNR	0	genome.wustl.edu	37	1	152188940	152188940	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	152188940	152188940	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5165	p.L1722S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	17	0	0.00	70	31	30.69	-	-	-
IFITM3	0	genome.wustl.edu	37	11	320790	320790	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	320790	320790	G	T	SNP	IFITM3	ENST00000399808	human	ensembl	69_37n	-1	known	missense	c.24	p.F8L	0.000	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM3	HGNC	ENSG00000142089	123	0	0.00	111	33	22.92	-	-	-
IGHV4-31	0	genome.wustl.edu	37	14	106805400	106805400	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	106805400	106805400	A	T	SNP	IGHV4-31	ENST00000438142	human	ensembl	69_37n	-1	known	missense	c.163	p.W55R	0.000	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGHV4-31	HGNC	ENSG00000231475	251	0	0.00	239	176	42.41	-	-	-
IRAK3	0	genome.wustl.edu	37	12	66641568	66641568	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	12	66641568	66641568	T	G	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	+1	known	missense	c.1408	p.F470V	0.716	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	261	1	0.38	107	121	53.07	-	-	-
KLHL38	0	genome.wustl.edu	37	8	124664638	124664638	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	124664638	124664638	C	T	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.529	p.A177T	0.311	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	18	0	0.00	18	14	43.75	-	-	-
MEGF8	0	genome.wustl.edu	37	19	42862378	42862378	+	Silent	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	42862378	42862378	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	+1	known	silent	c.5094	p.L1698	0.999	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	75	0	0.00	70	13	15.66	-	-	-
NOVA2	0	genome.wustl.edu	37	19	46457123	46457123	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	46457123	46457123	C	T	SNP	NOVA2	ENST00000263257	human	ensembl	69_37n	-1	known	missense	c.311	p.R104Q	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967	374	1	0.27	210	272	56.31	-	-	-
OCRL	0	genome.wustl.edu	37	X	128692644	128692644	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	128692644	128692644	G	T	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	+1	known	missense	c.474	p.M158I	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	264	1	0.38	136	93	40.61	-	-	-
OR5AR1	0	genome.wustl.edu	37	11	56431680	56431680	+	Silent	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	56431680	56431680	C	T	SNP	OR5AR1	ENST00000302969	human	ensembl	69_37n	+1	known	silent	c.519	p.I173	0.574	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	301	0	0.00	215	72	25.09	-	-	-
OR5T2	0	genome.wustl.edu	37	11	56000198	56000198	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	56000198	56000198	G	A	SNP	OR5T2	ENST00000313264	human	ensembl	69_37n	-1	known	missense	c.464	p.A155V	0.957	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T2	HGNC	ENSG00000181718	268	0	0.00	187	52	21.76	-	-	-
PCDHGA7	0	genome.wustl.edu	37	5	140764680	140764680	+	Silent	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	5	140764680	140764680	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	+1	known	silent	c.2214	p.S738	0.173	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	74	0	0.00	52	48	47.52	-	-	-
PGLYRP3	0	genome.wustl.edu	37	1	153270481	153270481	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	153270481	153270481	C	A	SNP	PGLYRP3	ENST00000290722	human	ensembl	69_37n	-1	known	missense	c.977	p.G326V	0.802	pfam_Amidase_domain,superfamily_Amidase_domain,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527	100	0	0.00	198	32	13.91	-	-	-
PGM5	0	genome.wustl.edu	37	9	70993224	70993224	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	70993224	70993224	G	T	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	+1	known	missense	c.371	p.C124F	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	182	0	0.00	169	30	15.08	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	147	0	0.00	68	72	51.06	-	-	-
PPID	0	genome.wustl.edu	37	4	159644428	159644428	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	4	159644428	159644428	A	C	SNP	PPID	ENST00000307720	human	ensembl	69_37n	-1	known	missense	c.13	p.S5A	0.189	superfamily_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497	154	1	0.65	139	58	29.44	-	-	-
PRRX1	0	genome.wustl.edu	37	1	170695377	170695377	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	170695377	170695377	G	A	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	+1	known	missense	c.434	p.R145Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	60	0	0.00	53	35	39.77	-	-	-
RNF113A	0	genome.wustl.edu	37	X	119005097	119005097	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	119005097	119005097	C	A	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.480	p.Q160H	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	216	0	0.00	228	36	13.64	-	-	-
RP1	0	genome.wustl.edu	37	8	55533917	55533917	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	55533917	55533917	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	+1	known	missense	c.391	p.R131W	1.000	superfamily_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	15	0	0.00	10	14	58.33	-	-	-
SF1	0	genome.wustl.edu	37	11	64534720	64534720	+	Splice_Site	SNP	T	T	G			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	64534720	64534720	T	G	SNP	SF1	ENST00000486867	human	ensembl	69_37n	-1	putative	splice_site	c.506-2	e4-2	1.000	-	-	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SF1	HGNC	ENSG00000168066	145	0	0.00	121	51	29.65	-	-	-
SLC12A9	0	genome.wustl.edu	37	7	100456724	100456724	+	Silent	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	7	100456724	100456724	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	+1	known	silent	c.918	p.V306	0.000	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	195	1	0.51	319	40	11.14	-	-	-
SLC40A1	0	genome.wustl.edu	37	2	190428591	190428591	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	2	190428591	190428591	A	C	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	missense	c.1121	p.L374R	0.978	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	102	0	0.00	67	51	42.86	-	-	-
SLIT1	0	genome.wustl.edu	37	10	98816176	98816176	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	98816176	98816176	G	T	SNP	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	missense	c.1203	p.F401L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	213	0	0.00	153	123	44.57	-	-	-
SMC1A	0	genome.wustl.edu	37	X	53439174	53439174	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	53439174	53439174	C	T	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.884	p.R295Q	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	271	0	0.00	207	124	37.46	-	-	-
UBA1	0	genome.wustl.edu	37	X	47065655	47065655	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	47065655	47065655	A	T	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	+1	known	missense	c.1750	p.M584L	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	59	0	0.00	33	34	50.75	-	-	-
VPS13B	0	genome.wustl.edu	37	8	100883111	100883111	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	100883111	100883111	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	+1	known	missense	c.11566	p.V3856I	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	115	0	0.00	83	46	35.66	-	-	-
VPS28	0	genome.wustl.edu	37	8	145649475	145649475	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	145649475	145649475	C	T	SNP	VPS28	ENST00000377348	human	ensembl	69_37n	-1	known	missense	c.497	p.R166H	0.996	pfam_VPS28,pirsf_VPS28	pfam_VPS28,pirsf_VPS28	-	no_errors	VPS28	HGNC	ENSG00000160948	29	0	0.00	35	30	46.15	-	-	-
