Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD34C	0	genome.wustl.edu	37	15	79586581	79586581	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	15	79586581	79586581	A	-	DEL	ANKRD34C	ENST00000421388	human	ensembl	69_37n	+1	known	frame_shift_del	c.955	p.K319fs	0.811	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34C	HGNC	ENSG00000235711	38	0	0.00	10	2	16.67	-	-	-
ANKRD52	0	genome.wustl.edu	37	12	56651611	56651611	+	Splice_Site	DEL	C	C	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	12	56651611	56651611	C	-	DEL	ANKRD52	ENST00000267116	human	ensembl	69_37n	-1	known	splice_site_del	c.111+1	e2+1	1.000	-	-	-	no_errors	ANKRD52	HGNC	ENSG00000139645	87	0	0.00	15	2	11.76	-	-	-
BCL9L	0	genome.wustl.edu	37	11	118769652	118769652	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	118769652	118769652	G	-	DEL	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	frame_shift_del	c.3972	p.F1324fs	0.993	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	85	0	0.00	17	2	10.53	-	-	-
COL5A1	0	genome.wustl.edu	37	9	137687132	137687132	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	137687132	137687132	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	+1	known	missense	c.2770	p.R924W	0.985	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	128	0	0.00	24	13	35.14	-	-	-
CRIPAK	0	genome.wustl.edu	37	4	1388682	1388683	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	4	1388682	1388683	-	CA	INS	CRIPAK	ENST00000324803	human	ensembl	69_37n	+1	known	frame_shift_ins	c.383_384	p.R130fs	0.006:0.026	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	106	1	0.93	17	3	15.00	-	-	-
CTC1	0	genome.wustl.edu	37	17	8138378	8138378	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	17	8138378	8138378	C	-	DEL	CTC1	ENST00000315684	human	ensembl	69_37n	-1	known	frame_shift_del	c.1432	p.A478fs	0.871	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971	46	0	0.00	3	2	40.00	-	-	-
CTCF	0	genome.wustl.edu	37	16	67670628	67670628	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	16	67670628	67670628	G	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	+1	known	nonsense	c.1873	p.E625*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	94	0	0.00	0	29	100.00	-	-	-
DAB2IP	0	genome.wustl.edu	37	9	124522318	124522318	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	124522318	124522318	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	+1	known	missense	c.770	p.G257D	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	91	0	0.00	8	5	38.46	-	-	-
DRD3	0	genome.wustl.edu	37	3	113890710	113890710	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	113890710	113890710	C	T	SNP	DRD3	ENST00000383673	human	ensembl	69_37n	-1	known	missense	c.130	p.V44I	0.481	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577	129	0	0.00	9	13	59.09	-	-	-
EFHA2	0	genome.wustl.edu	37	8	16944521	16944521	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	8	16944521	16944521	G	C	SNP	EFHA2	ENST00000318063	human	ensembl	69_37n	+1	known	missense	c.826	p.D276H	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHA2	HGNC	ENSG00000155970	504	0	0.00	147	94	39.00	-	-	-
EIF2C1	0	genome.wustl.edu	37	1	36359982	36359982	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	36359982	36359982	G	A	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	+1	known	missense	c.851	p.R284H	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	207	0	0.00	31	31	50.00	-	-	-
EXTL3	0	genome.wustl.edu	37	8	28595139	28595139	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	8	28595139	28595139	G	C	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	+1	known	missense	c.2380	p.E794Q	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	241	0	0.00	26	15	36.59	-	-	-
FAM75A6	0	genome.wustl.edu	37	9	43624850	43624850	+	Silent	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	43624850	43624850	C	T	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	silent	c.3837	p.R1279	0.001	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	92	0	0.00	25	3	10.71	-	-	-
FAM83G	0	genome.wustl.edu	37	17	18891586	18891586	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	17	18891586	18891586	C	-	DEL	FAM83G	ENST00000345041	human	ensembl	69_37n	-1	known	frame_shift_del	c.664	p.A222fs	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	101	0	0.00	9	2	18.18	-	-	-
FANCD2	0	genome.wustl.edu	37	3	10106486	10106486	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	10106486	10106486	C	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	+1	known	missense	c.2095	p.L699F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	127	0	0.00	33	18	35.29	-	-	-
FMN2	0	genome.wustl.edu	37	1	240374531	240374531	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	240374531	240374531	A	G	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	+1	known	missense	c.4061	p.K1354R	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	316	0	0.00	72	73	50.34	-	-	-
FRY	0	genome.wustl.edu	37	13	32869412	32869412	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	13	32869412	32869412	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	+1	known	missense	c.8857	p.R2953C	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	271	0	0.00	46	36	43.90	-	-	-
GALNT11	0	genome.wustl.edu	37	7	151807732	151807732	+	Splice_Site	SNP	T	T	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	7	151807732	151807732	T	A	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	+1	known	splice_site	c.1080+2	e6+2	1.000	-	-	-	no_errors	GALNT11	HGNC	ENSG00000178234	391	0	0.00	171	22	11.40	-	-	-
GUCY2F	0	genome.wustl.edu	37	X	108718516	108718516	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	X	108718516	108718516	C	A	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.650	p.G217V	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	100	1	0.99	12	5	29.41	-	-	-
HAS3	0	genome.wustl.edu	37	16	69148464	69148464	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	16	69148464	69148464	C	-	DEL	HAS3	ENST00000306560	human	ensembl	69_37n	+1	known	frame_shift_del	c.957	p.L320fs	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS3	HGNC	ENSG00000103044	91	0	0.00	7	2	22.22	-	-	-
HECTD4	0	genome.wustl.edu	37	12	112657218	112657218	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	12	112657218	112657218	G	-	DEL	HECTD4	ENST00000377560	human	ensembl	69_37n	-1	known	frame_shift_del	c.6530	p.P2177fs	1.000	superfamily_ConA-like_lec_gl	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	93	0	0.00	18	2	10.00	-	-	-
HYOU1	0	genome.wustl.edu	37	11	118925916	118925916	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	118925916	118925916	C	A	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.400	p.V134L	0.999	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	132	0	0.00	0	12	100.00	-	-	-
KCNS3	0	genome.wustl.edu	37	2	18112662	18112662	+	Silent	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	18112662	18112662	C	T	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	+1	known	silent	c.387	p.H129	0.038	superfamily_BTB/POZ_fold	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	151	0	0.00	27	14	34.15	-	-	-
KIAA0922	0	genome.wustl.edu	37	4	154471282	154471282	+	Silent	SNP	T	T	C			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	4	154471282	154471282	T	C	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	+1	known	silent	c.297	p.D99	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	276	0	0.00	170	133	43.89	-	-	-
LIF	0	genome.wustl.edu	37	22	30639826	30639826	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	22	30639826	30639826	G	A	SNP	LIF	ENST00000403987	human	ensembl	69_37n	-1	putative	nonsense	c.244	p.R82*	0.000	NULL	NULL	-	no_errors	LIF	HGNC	ENSG00000128342	432	0	0.00	8	54	85.71	-	-	-
MADD	0	genome.wustl.edu	37	11	47303974	47303974	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	47303974	47303974	G	-	DEL	MADD	ENST00000311027	human	ensembl	69_37n	+1	known	frame_shift_del	c.1512	p.G505fs	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	139	0	0.00	12	2	14.29	-	-	-
NFATC2	0	genome.wustl.edu	37	20	50048860	50048860	+	Silent	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	20	50048860	50048860	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	silent	c.2466	p.C822	0.944	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	102	1	0.97	15	15	50.00	-	-	-
NTM	0	genome.wustl.edu	37	11	132180029	132180029	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	132180029	132180029	A	-	DEL	NTM	ENST00000539799	human	ensembl	69_37n	+1	known	frame_shift_del	c.685	p.K229fs	0.998	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NTM	HGNC	ENSG00000182667	105	0	0.00	15	2	11.76	-	-	-
PALMD	0	genome.wustl.edu	37	1	100154698	100154698	+	Silent	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	100154698	100154698	G	A	SNP	PALMD	ENST00000263174	human	ensembl	69_37n	+1	known	silent	c.882	p.L294	0.002	NULL	pfam_Paralemmin	-	no_errors	PALMD	HGNC	ENSG00000099260	185	0	0.00	61	31	33.70	-	-	-
PARD3	0	genome.wustl.edu	37	10	34620061	34620061	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	10	34620061	34620061	A	T	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.2826	p.D942E	0.316	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	242	1	0.41	28	24	46.15	-	-	-
PDCD1	0	genome.wustl.edu	37	2	242793270	242793270	+	Silent	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	242793270	242793270	G	A	SNP	PDCD1	ENST00000334409	human	ensembl	69_37n	-1	known	silent	c.807	p.D269	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PDCD1	HGNC	ENSG00000188389	32	0	0.00	8	12	60.00	-	-	-
PRPF39	0	genome.wustl.edu	37	14	45566145	45566145	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	14	45566145	45566145	A	G	SNP	PRPF39	ENST00000355765	human	ensembl	69_37n	+1	known	missense	c.506	p.Y169C	1.000	smart_HAT	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246	252	0	0.00	94	53	35.81	-	-	-
PSD2	0	genome.wustl.edu	37	5	139202313	139202313	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	5	139202313	139202313	G	-	DEL	PSD2	ENST00000274710	human	ensembl	69_37n	+1	known	frame_shift_del	c.1213	p.I406fs	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	54	0	0.00	13	2	13.33	-	-	-
PTPN5	0	genome.wustl.edu	37	11	18765723	18765723	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	18765723	18765723	C	-	DEL	PTPN5	ENST00000358540	human	ensembl	69_37n	-1	known	frame_shift_del	c.121	p.E41fs	0.975	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786	103	0	0.00	15	2	11.76	-	-	-
RETNLB	0	genome.wustl.edu	37	3	108474726	108474726	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	108474726	108474726	C	T	SNP	RETNLB	ENST00000295755	human	ensembl	69_37n	-1	known	missense	c.235	p.G79S	1.000	pfam_Resistin,superfamily_Resistin	pfam_Resistin,superfamily_Resistin	-	no_errors	RETNLB	HGNC	ENSG00000163515	70	0	0.00	20	6	23.08	-	-	-
RGPD8	0	genome.wustl.edu	37	2	113161599	113161599	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	113161599	113161599	A	T	SNP	RGPD8	ENST00000302558	human	ensembl	69_37n	-1	known	missense	c.1220	p.I407N	0.992	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD8	HGNC	ENSG00000169629	74	0	0.00	22	11	33.33	-	-	-
SCN11A	0	genome.wustl.edu	37	3	38938447	38938447	+	Silent	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	38938447	38938447	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	silent	c.2292	p.I764	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	316	0	0.00	34	30	46.88	-	-	-
SHROOM4	0	genome.wustl.edu	37	X	50377366	50377366	+	Silent	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	X	50377366	50377366	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.1707	p.R569	0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	116	0	0.00	9	12	57.14	-	-	-
SYNDIG1L	0	genome.wustl.edu	37	14	74876345	74876345	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	14	74876345	74876345	G	-	DEL	SYNDIG1L	ENST00000331628	human	ensembl	69_37n	-1	known	frame_shift_del	c.103	p.Q35fs	1.000	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	SYNDIG1L	HGNC	ENSG00000183379	64	0	0.00	17	2	10.53	-	-	-
SYNM	0	genome.wustl.edu	37	15	99672941	99672941	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	15	99672941	99672941	C	T	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	+1	known	missense	c.4373	p.S1458L	0.834	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	157	0	0.00	15	5	25.00	-	-	-
TBC1D10C	0	genome.wustl.edu	37	11	67173127	67173127	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	67173127	67173127	G	A	SNP	TBC1D10C	ENST00000312390	human	ensembl	69_37n	+1	known	missense	c.422	p.R141H	0.998	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	87	0	0.00	42	12	22.22	-	-	-
THBS2	0	genome.wustl.edu	37	6	169626380	169626380	+	Silent	SNP	T	T	C			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	6	169626380	169626380	T	C	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	silent	c.2433	p.E811	0.895	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	185	0	0.00	32	22	40.74	-	-	-
UBR4	0	genome.wustl.edu	37	1	19491831	19491831	+	Silent	SNP	T	T	C			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	19491831	19491831	T	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.4224	p.V1408	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	80	0	0.00	23	4	14.81	-	-	-
UGT1A6	0	genome.wustl.edu	37	2	234601744	234601744	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	234601744	234601744	G	T	SNP	UGT1A6	ENST00000305139	human	ensembl	69_37n	+1	known	missense	c.94	p.V32F	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165	88	0	0.00	12	14	53.85	-	-	-
