Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AHCTF1	0	genome.wustl.edu	37	1	247027259	247027259	+	Silent	SNP	T	T	C			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	1	247027259	247027259	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.3534	p.E1178	0.981	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	53	0	0.00	17	14	45.16	-	-	-
BOD1L1	0	genome.wustl.edu	37	4	13604573	13604573	+	Silent	SNP	G	G	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	4	13604573	13604573	G	T	SNP	BOD1L1	ENST00000040738	human	ensembl	69_37n	-1	known	silent	c.3951	p.T1317	0.011	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219	46	0	0.00	16	35	68.63	-	-	-
C14orf102	0	genome.wustl.edu	37	14	90764685	90764685	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	14	90764685	90764685	G	A	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.1585	p.R529W	1.000	pfam_NRDE-2	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	42	0	0.00	9	8	47.06	-	-	-
COL27A1	0	genome.wustl.edu	37	9	116930643	116930643	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	9	116930643	116930643	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	+1	known	missense	c.808	p.E270K	0.679	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	45	0	0.00	20	3	13.04	-	-	-
CS	0	genome.wustl.edu	37	12	56676232	56676232	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	12	56676232	56676232	T	C	SNP	CS	ENST00000351328	human	ensembl	69_37n	-1	known	missense	c.560	p.Q187R	1.000	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,tigrfam_Citrate_synthase_euk	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,prints_Citrate_synthase-like,tigrfam_Citrate_synthase_euk	-	no_errors	CS	HGNC	ENSG00000062485	110	1	0.90	45	5	10.00	-	-	-
CS	0	genome.wustl.edu	37	12	56676244	56676244	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	12	56676244	56676244	C	T	SNP	CS	ENST00000351328	human	ensembl	69_37n	-1	known	missense	c.548	p.R183Q	1.000	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,tigrfam_Citrate_synthase_euk	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,prints_Citrate_synthase-like,tigrfam_Citrate_synthase_euk	-	no_errors	CS	HGNC	ENSG00000062485	104	1	0.95	40	6	13.04	-	-	-
CTBP1-AS1	0	genome.wustl.edu	37	4	1245889	1245889	+	RNA	SNP	C	C	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	4	1245889	1245889	C	A	SNP	CTBP1-AS1	ENST00000581398	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTBP1-AS1	HGNC	ENSG00000196810	24	0	0.00	12	12	50.00	-	-	-
DST	0	genome.wustl.edu	37	6	56323823	56323823	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	6	56323823	56323823	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.23233	p.D7745H	1.000	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	90	0	0.00	39	22	36.07	-	-	-
DST	0	genome.wustl.edu	37	6	56323940	56323940	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	6	56323940	56323940	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.23116	p.D7706N	1.000	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	39	0	0.00	23	20	46.51	-	-	-
DST	0	genome.wustl.edu	37	6	56324027	56324027	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	6	56324027	56324027	C	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	nonsense	c.23029	p.G7677*	1.000	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	40	0	0.00	9	8	47.06	-	-	-
FAM123C	0	genome.wustl.edu	37	2	131521307	131521308	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	2	131521307	131521308	-	G	INS	FAM123C	ENST00000321420	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1662_1663	p.A556fs	0.000:0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	14	0	0.00	10	4	28.57	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40433370	40433370	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	19	40433370	40433370	C	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.899	p.R300L	0.023	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	36	0	0.00	13	5	27.78	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115861	8115862	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	10	8115861	8115862	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1210_1211	p.S405fs	0.998:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	52	0	0.00	10	4	28.57	-	-	-
GFPT2	0	genome.wustl.edu	37	5	179740926	179740927	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	5	179740926	179740927	-	A	INS	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1312_1311	p.K437fs	1.000:0.889	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	51	0	0.00	20	10	33.33	-	-	-
HDAC5	0	genome.wustl.edu	37	17	42161001	42161001	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	17	42161001	42161001	C	T	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	nonsense	c.2378	p.W793*	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	44	0	0.00	17	17	50.00	-	-	-
HRNR	0	genome.wustl.edu	37	1	152186614	152186614	+	Silent	SNP	C	C	G			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	1	152186614	152186614	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.7491	p.S2497	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	37	0	0.00	32	5	13.51	-	-	-
HTRA3	0	genome.wustl.edu	37	4	8305971	8305971	+	Nonsense_Mutation	SNP	T	T	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	4	8305971	8305971	T	A	SNP	HTRA3	ENST00000307358	human	ensembl	69_37n	+1	known	nonsense	c.1161	p.Y387*	0.454	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1_S6,pfam_Kazal-type_dom,pfam_PDZ,pfam_Prot_inh_Kazal,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,prints_Peptidase_S1C,pfscan_PDZ	-	no_errors	HTRA3	HGNC	ENSG00000170801	99	0	0.00	28	22	44.00	-	-	-
ITCH	0	genome.wustl.edu	37	20	33077728	33077728	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	20	33077728	33077728	G	T	SNP	ITCH	ENST00000262650	human	ensembl	69_37n	+1	known	missense	c.2439	p.W813C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	ITCH	HGNC	ENSG00000078747	57	0	0.00	19	8	29.63	-	-	-
JRK	0	genome.wustl.edu	37	8	143745924	143745924	+	RNA	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	8	143745924	143745924	G	A	SNP	JRK	ENST00000422119	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	35	0	0.00	11	6	35.29	-	-	-
KDM2A	0	genome.wustl.edu	37	11	67012699	67012699	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	11	67012699	67012699	A	G	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	+1	known	missense	c.1603	p.I535V	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	70	0	0.00	19	19	50.00	-	-	-
KIAA0430	0	genome.wustl.edu	37	16	15725261	15725261	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	16	15725261	15725261	G	T	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.1328	p.P443Q	1.000	pfam_NYN_limkain-b1	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	47	0	0.00	35	4	10.26	-	-	-
KIAA0895	0	genome.wustl.edu	37	7	36423487	36423487	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	7	36423487	36423487	T	A	SNP	KIAA0895	ENST00000297063	human	ensembl	69_37n	-1	known	missense	c.159	p.K53N	0.338	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542	51	0	0.00	16	3	15.79	-	-	-
KRT86	0	genome.wustl.edu	37	12	52695896	52695896	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	12	52695896	52695896	C	T	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	+1	known	missense	c.196	p.R66C	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	14	0	0.00	7	5	41.67	-	-	-
LINC00618	0	genome.wustl.edu	37	14	97411646	97411646	+	RNA	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	14	97411646	97411646	C	T	SNP	LINC00618	ENST00000435624	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	LINC00618	HGNC	ENSG00000225163	33	0	0.00	19	17	47.22	-	-	-
MLL5	0	genome.wustl.edu	37	7	104703871	104703871	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	7	104703871	104703871	A	G	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	+1	known	missense	c.260	p.N87S	1.000	superfamily_Znf_FYVE_PHD	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	46	0	0.00	25	14	35.00	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1263006	1263006	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	11	1263006	1263006	G	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.4905	p.Q1635H	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	23	0	0.00	2	7	77.78	-	-	-
NOTCH1	0	genome.wustl.edu	37	9	139400222	139400222	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	9	139400222	139400222	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.4126	p.G1376S	0.674	pirsf_Notch,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	39	0	0.00	25	22	46.81	-	-	-
NRIP1	0	genome.wustl.edu	37	21	16340003	16340004	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	21	16340003	16340004	-	TT	INS	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	frame_shift_ins	c.511_510	p.V170fs	1.000:0.999	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	61	0	0.00	24	10	29.41	-	-	-
PIGA	0	genome.wustl.edu	37	X	15342880	15342880	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	X	15342880	15342880	T	A	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.1095	p.Q365H	0.089	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	47	0	0.00	11	3	20.00	-	-	-
PPP1R37	0	genome.wustl.edu	37	19	45649032	45649032	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	19	45649032	45649032	G	A	SNP	PPP1R37	ENST00000221462	human	ensembl	69_37n	+1	known	missense	c.1718	p.R573Q	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	PPP1R37	HGNC	ENSG00000104866	24	0	0.00	10	4	26.67	-	-	-
PRICKLE2	0	genome.wustl.edu	37	3	64084954	64084954	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	3	64084954	64084954	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	missense	c.2308	p.A770T	0.186	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	30	0	0.00	20	13	39.39	-	-	-
PTP4A2	0	genome.wustl.edu	37	1	32384789	32384792	+	RNA	DEL	ATCA	ATCA	-			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	ATCA	ATCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	1	32384789	32384792	ATCA	-	DEL	PTP4A2	ENST00000526960	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.940:0.897:0.372:0.298	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007	13	0	0.00	7	7	50.00	-	-	-
RALYL	0	genome.wustl.edu	37	8	85785620	85785620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	8	85785620	85785620	A	-	DEL	RALYL	ENST00000521268	human	ensembl	69_37n	+1	known	frame_shift_del	c.673	p.K225fs	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672	28	0	0.00	9	2	18.18	-	-	-
SLC16A5	0	genome.wustl.edu	37	17	73100170	73100172	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	17	73100170	73100172	AGA	-	DEL	SLC16A5	ENST00000329783	human	ensembl	69_37n	+1	known	in_frame_del	c.1259_1261	p.K422in_frame_del	0.922:0.979:0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	45	0	0.00	12	29	69.05	-	-	-
SLCO1B3	0	genome.wustl.edu	37	12	21220258	21220258	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	12	21220258	21220258	T	-	DEL	SLCO1B3	ENST00000553473	human	ensembl	69_37n	+1	known	frame_shift_del	c.1871	p.Q625fs	0.184	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	51	0	0.00	16	2	11.11	-	-	-
SLTM	0	genome.wustl.edu	37	15	59179738	59179738	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	15	59179738	59179738	G	A	SNP	SLTM	ENST00000380516	human	ensembl	69_37n	-1	known	missense	c.2377	p.R793W	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	65	0	0.00	43	14	24.56	-	-	-
WDR13	0	genome.wustl.edu	37	X	48458086	48458086	+	Silent	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	X	48458086	48458086	C	T	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	+1	known	silent	c.504	p.D168	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	32	0	0.00	3	10	76.92	-	-	-
ZNF385D	0	genome.wustl.edu	37	3	21478513	21478513	+	Silent	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	3	21478513	21478513	G	A	SNP	ZNF385D	ENST00000281523	human	ensembl	69_37n	-1	known	silent	c.622	p.L208	0.954	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789	181	0	0.00	69	62	47.33	-	-	-
ZNF518B	0	genome.wustl.edu	37	4	10445820	10445820	+	Silent	SNP	G	G	A			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	4	10445820	10445820	G	A	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	silent	c.2133	p.N711	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	35	0	0.00	12	14	53.85	-	-	-
ZNF707	0	genome.wustl.edu	37	8	144773090	144773090	+	RNA	SNP	C	C	T			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	8	144773090	144773090	C	T	SNP	ZNF707	ENST00000530341	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF707	HGNC	ENSG00000181135	15	0	0.00	8	11	57.89	-	-	-
