Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM2	0	genome.wustl.edu	37	8	39695678	39695678	+	Silent	SNP	G	G	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	8	39695678	39695678	G	A	SNP	ADAM2	ENST00000265708	human	ensembl	69_37n	-1	known	silent	c.27	p.S9	0.001	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	59	0	0.00	65	10	13.33	-	-	-
ARPP21	0	genome.wustl.edu	37	3	35833914	35833914	+	Silent	SNP	C	C	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	3	35833914	35833914	C	A	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	+1	known	silent	c.2076	p.G692	0.982	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	60	0	0.00	33	15	31.25	-	-	-
CELSR2	0	genome.wustl.edu	37	1	109814957	109814957	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	1	109814957	109814957	T	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	+1	known	missense	c.7984	p.S2662P	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	15	0	0.00	4	8	66.67	-	-	-
CREBL2	0	genome.wustl.edu	37	12	12788868	12788868	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	12	12788868	12788868	G	T	SNP	CREBL2	ENST00000228865	human	ensembl	69_37n	+1	known	missense	c.173	p.R58L	0.999	pfam_bZIP_2,pfam_bZIP_1	pfam_bZIP_2,pfam_bZIP_1	-	no_errors	CREBL2	HGNC	ENSG00000111269	18	0	0.00	16	11	40.74	-	-	-
DMBX1	0	genome.wustl.edu	37	1	46977791	46977791	+	Silent	SNP	G	G	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	1	46977791	46977791	G	A	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	+1	known	silent	c.774	p.S258	0.031	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	41	0	0.00	4	5	55.56	-	-	-
DNAH1	0	genome.wustl.edu	37	3	52404645	52404645	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	3	52404645	52404645	C	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	+1	known	missense	c.6411	p.N2137K	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	31	0	0.00	16	10	38.46	-	-	-
GALNT8	0	genome.wustl.edu	37	12	4874615	4874615	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	12	4874615	4874615	G	A	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	+1	known	missense	c.1664	p.R555H	0.132	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	77	0	0.00	43	8	15.69	-	-	-
GHRHR	0	genome.wustl.edu	37	7	31013744	31013744	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	7	31013744	31013744	G	A	SNP	GHRHR	ENST00000326139	human	ensembl	69_37n	+1	known	missense	c.742	p.A248T	0.820	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	GHRHR	HGNC	ENSG00000106128	31	0	0.00	10	16	61.54	-	-	-
GOLGA8IP	0	genome.wustl.edu	37	15	23259835	23259835	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	15	23259835	23259835	C	T	SNP	GOLGA8IP	ENST00000450802	human	ensembl	69_37n	+1	known	missense	c.505	p.R169C	0.288	NULL	NULL	-	no_errors	GOLGA8IP	HGNC	ENSG00000153666	8	0	0.00	6	6	50.00	-	-	-
GPC3	0	genome.wustl.edu	37	X	132887946	132887946	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	X	132887946	132887946	G	A	SNP	GPC3	ENST00000394299	human	ensembl	69_37n	-1	known	nonsense	c.595	p.R199*	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC3	HGNC	ENSG00000147257	139	0	0.00	126	31	19.75	-	-	-
IGHG4	0	genome.wustl.edu	37	14	106092401	106092401	+	Silent	SNP	A	A	G			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	14	106092401	106092401	A	G	SNP	IGHG4	ENST00000390543	human	ensembl	69_37n	-1	known	silent	c.3	p.A1	0.002	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHG4	HGNC	ENSG00000211892	17	0	0.00	16	6	27.27	-	-	-
LBH	0	genome.wustl.edu	37	2	30457271	30457271	+	Silent	SNP	C	C	T			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	2	30457271	30457271	C	T	SNP	LBH	ENST00000395323	human	ensembl	69_37n	+1	known	silent	c.27	p.C9	1.000	pirsf_LBH	pirsf_LBH,prints_LBH	-	no_errors	LBH	HGNC	ENSG00000213626	65	0	0.00	34	12	26.09	-	-	-
MAGEA12	0	genome.wustl.edu	37	X	151900138	151900138	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	X	151900138	151900138	G	C	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.663	p.I221M	0.014	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	116	0	0.00	75	9	10.59	-	-	-
MYT1L	0	genome.wustl.edu	37	2	1926290	1926290	+	Silent	SNP	C	C	T			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	2	1926290	1926290	C	T	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	silent	c.1251	p.S417	0.141	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	74	0	0.00	20	17	45.95	-	-	-
OR51E2	0	genome.wustl.edu	37	11	4703421	4703421	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	11	4703421	4703421	G	A	SNP	OR51E2	ENST00000396950	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332	11	0	0.00	20	16	44.44	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178928086	178928087	+	Frame_Shift_Ins	INS	-	-	G			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	3	178928086	178928087	-	G	INS	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1364_1365	p.L456fs	1.000:1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0.00	40	5	11.11	-	-	-
SF3B1	0	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	24	0	0.00	8	13	61.90	-	-	-
TBC1D3P5	0	genome.wustl.edu	37	17	25752519	25752519	+	RNA	SNP	C	C	T			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	17	25752519	25752519	C	T	SNP	TBC1D3P5	ENST00000586223	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TBC1D3P5	HGNC	ENSG00000266433	60	0	0.00	31	6	16.22	-	-	-
USH1C	0	genome.wustl.edu	37	11	17518353	17518353	+	Missense_Mutation	SNP	A	A	C			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	11	17518353	17518353	A	C	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.2498	p.I833S	0.998	superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	33	0	0.00	15	5	25.00	-	-	-
WDR66	0	genome.wustl.edu	37	12	122359385	122359385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	12	122359385	122359385	C	-	DEL	WDR66	ENST00000288912	human	ensembl	69_37n	+1	known	frame_shift_del	c.174	p.E59fs	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	25	0	0.00	18	5	20.83	-	-	-
