Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA6	0	genome.wustl.edu	37	17	67080627	67080627	+	Silent	SNP	C	C	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	17	67080627	67080627	C	T	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.4206	p.L1402	0.939	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	28	0	0.00	19	9	32.14	-	-	-
ADAMTS6	0	genome.wustl.edu	37	5	64593049	64593049	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	5	64593049	64593049	T	C	SNP	ADAMTS6	ENST00000536360	human	ensembl	69_37n	-1	known	missense	c.1393	p.I465V	1.000	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	68	0	0.00	33	7	17.50	-	-	-
ADAMTSL1	0	genome.wustl.edu	37	9	18574056	18574056	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	9	18574056	18574056	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	+1	known	missense	c.266	p.R89Q	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	142	1	0.70	85	10	10.53	-	-	-
ATG9A	0	genome.wustl.edu	37	2	220087423	220087423	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	2	220087423	220087423	G	T	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	missense	c.1792	p.L598M	0.583	NULL	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	64	0	0.00	51	9	15.00	-	-	-
C18orf63	0	genome.wustl.edu	37	18	72009541	72009541	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	18	72009541	72009541	G	T	SNP	C18orf63	ENST00000382675	human	ensembl	69_37n	+1	known	missense	c.774	p.M258I	1.000	NULL	NULL	-	no_errors	C18orf63	HGNC	ENSG00000206043	76	0	0.00	30	4	11.76	-	-	-
CDH1	0	genome.wustl.edu	37	16	68842369	68842369	+	Frame_Shift_Del	DEL	A	A	-			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	16	68842369	68842369	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.430	p.N144fs	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	136	0	0.00	83	15	15.15	-	-	-
DIO3OS	0	genome.wustl.edu	37	14	102018949	102018949	+	RNA	SNP	G	G	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	14	102018949	102018949	G	T	SNP	DIO3OS	ENST00000553575	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DIO3OS	HGNC	ENSG00000258498	101	0	0.00	46	8	14.81	-	-	-
DSG3	0	genome.wustl.edu	37	18	29037028	29037028	+	Frame_Shift_Del	DEL	A	A	-			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	18	29037028	29037028	A	-	DEL	DSG3	ENST00000257189	human	ensembl	69_37n	+1	known	frame_shift_del	c.157	p.K53fs	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	43	0	0.00	11	2	15.38	-	-	-
FAM216A	0	genome.wustl.edu	37	12	110924358	110924358	+	Silent	SNP	A	A	G			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	12	110924358	110924358	A	G	SNP	FAM216A	ENST00000377673	human	ensembl	69_37n	+1	known	silent	c.456	p.R152	0.638	NULL	NULL	-	no_errors	FAM216A	HGNC	ENSG00000204856	67	0	0.00	38	11	22.45	-	-	-
FLG	0	genome.wustl.edu	37	1	152283588	152283588	+	Silent	SNP	C	C	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	1	152283588	152283588	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.3774	p.S1258	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	327	0	0.00	217	65	22.97	-	-	-
FRS3	0	genome.wustl.edu	37	6	41738550	41738550	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	6	41738550	41738550	C	T	SNP	FRS3	ENST00000259748	human	ensembl	69_37n	-1	known	missense	c.1286	p.R429H	0.966	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218	44	0	0.00	39	5	11.36	-	-	-
GAS6	0	genome.wustl.edu	37	13	114549506	114549506	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	13	114549506	114549506	C	T	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	missense	c.337	p.V113M	0.331	NULL	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	106	0	0.00	42	7	14.29	-	-	-
GDPD4	0	genome.wustl.edu	37	11	76969468	76969468	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	11	76969468	76969468	G	A	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	missense	c.827	p.S276L	0.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	88	0	0.00	54	11	16.92	-	-	-
HECTD4	0	genome.wustl.edu	37	12	112664523	112664523	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	12	112664523	112664523	T	C	SNP	HECTD4	ENST00000550968	human	ensembl	69_37n	-1	putative	missense	c.128	p.Y43C	0.953	NULL	superfamily_ConA-like_lec_gl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HECTD4	HGNC	ENSG00000173064	61	0	0.00	34	8	19.05	-	-	-
KIAA0825	0	genome.wustl.edu	37	5	93820544	93820544	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	5	93820544	93820544	T	A	SNP	KIAA0825	ENST00000427991	human	ensembl	69_37n	-1	known	missense	c.1062	p.K354N	0.017	NULL	NULL	-	no_errors	KIAA0825	HGNC	ENSG00000185261	91	0	0.00	54	9	14.29	-	-	-
LENG1	0	genome.wustl.edu	37	19	54660549	54660549	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	19	54660549	54660549	C	A	SNP	LENG1	ENST00000222224	human	ensembl	69_37n	-1	known	missense	c.527	p.S176I	0.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617	177	1	0.56	105	15	12.50	-	-	-
MAML2	0	genome.wustl.edu	37	11	95712202	95712202	+	Silent	SNP	A	A	G			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	11	95712202	95712202	A	G	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.3381	p.D1127	0.884	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	87	0	0.00	45	13	22.41	-	-	-
PIN1P1	0	genome.wustl.edu	37	1	70385459	70385459	+	RNA	SNP	C	C	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	1	70385459	70385459	C	T	SNP	PIN1P1	ENST00000412108	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.785	-	-	-	no_errors	PIN1P1	HGNC	ENSG00000229359	89	0	0.00	69	11	13.75	-	-	-
PLXNA3	0	genome.wustl.edu	37	X	153694400	153694400	+	Silent	SNP	G	G	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	X	153694400	153694400	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	+1	known	silent	c.2655	p.P885	0.004	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	107	0	0.00	82	13	13.68	-	-	-
PSG5	0	genome.wustl.edu	37	19	43689261	43689261	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	19	43689261	43689261	G	T	SNP	PSG5	ENST00000342951	human	ensembl	69_37n	-1	known	missense	c.103	p.Q35K	0.029	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG5	HGNC	ENSG00000204941	251	1	0.40	157	18	10.23	-	-	-
PTEN	0	genome.wustl.edu	37	10	89717748	89717748	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	10	89717748	89717748	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	missense	c.773	p.F258Y	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	90	0	0.00	57	28	32.56	-	-	-
PTEN	0	genome.wustl.edu	37	10	89717749	89717749	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	10	89717749	89717749	C	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	missense	c.774	p.F258L	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	89	0	0.00	58	28	32.56	-	-	-
QARS	0	genome.wustl.edu	37	3	49141350	49141350	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	3	49141350	49141350	G	T	SNP	QARS	ENST00000418549	human	ensembl	69_37n	-1	known	nonsense	c.272	p.S91*	1.000	NULL	pfam_Gln-tRNA-synth_Ib_RNA-bd_N	-	no_errors	QARS	HGNC	ENSG00000172053	46	0	0.00	25	6	19.35	-	-	-
SMG1	0	genome.wustl.edu	37	16	18893628	18893628	+	Nonsense_Mutation	SNP	C	C	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	16	18893628	18893628	C	A	SNP	SMG1	ENST00000561947	human	ensembl	69_37n	-1	novel	nonsense	c.904	p.G302*	0.992	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMG1	HGNC	ENSG00000157106	318	0	0.00	206	29	12.29	-	-	-
STK31	0	genome.wustl.edu	37	7	23827646	23827646	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	7	23827646	23827646	G	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	+1	known	missense	c.2535	p.L845F	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	109	0	0.00	57	9	13.64	-	-	-
SUPT3H	0	genome.wustl.edu	37	6	44922335	44922335	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	6	44922335	44922335	G	A	SNP	SUPT3H	ENST00000371460	human	ensembl	69_37n	-1	known	missense	c.623	p.A208V	1.000	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284	86	0	0.00	51	10	16.39	-	-	-
UROD	0	genome.wustl.edu	37	1	45480829	45480829	+	RNA	SNP	T	T	C			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	1	45480829	45480829	T	C	SNP	UROD	ENST00000465678	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UROD	HGNC	ENSG00000126088	35	0	0.00	14	3	17.65	-	-	-
ZNF335	0	genome.wustl.edu	37	20	44596921	44596922	+	Splice_Site	INS	-	-	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	20	44596921	44596922	-	A	INS	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	splice_site_ins	c.520+2_520+1	e3+2	0.981:1.000	-	-	-	no_errors	ZNF335	HGNC	ENSG00000198026	94	0	0.00	54	14	20.59	-	-	-
ZNF335	0	genome.wustl.edu	37	20	44596921	44596922	+	Splice_Site	INS	-	-	A			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	20	44596921	44596922	0	A	INS	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	splice_site_ins	c.520+2_520+1	e3+2	0.981:1.000	-	-	-	no_errors	ZNF335	HGNC	ENSG00000198026	94	0	0	54	14	20.59	-	-	-
ZSWIM7	0	genome.wustl.edu	37	17	15897104	15897104	+	RNA	DEL	G	G	-			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	17	15897104	15897104	G	-	DEL	ZSWIM7	ENST00000475498	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZSWIM7	HGNC	ENSG00000214941	30	0	0.00	8	2	20.00	-	-	-
