Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
A2MP1	0	genome.wustl.edu	37	12	9413853	9413853	+	RNA	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	9413853	9413853	T	C	SNP	A2MP1	ENST00000544183	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	45	0	0.00	42	6	12.50	-	-	-
A2MP1	0	genome.wustl.edu	37	12	9413867	9413867	+	RNA	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	9413867	9413867	A	G	SNP	A2MP1	ENST00000544183	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	43	0	0.00	42	6	12.50	-	-	-
ABCA11P	0	genome.wustl.edu	37	4	420298	420299	+	RNA	DEL	AC	AC	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	4	420298	420299	AC	-	DEL	ABCA11P	ENST00000451020	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595	76	0	0.00	75	10	11.36	-	-	-
ACOT11	0	genome.wustl.edu	37	1	55067005	55067005	+	Silent	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	55067005	55067005	C	A	SNP	ACOT11	ENST00000371316	human	ensembl	69_37n	+1	known	silent	c.948	p.I316	1.000	NULL	pfam_START_lipid-bd,pfam_Thioestr_supf,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	ACOT11	HGNC	ENSG00000162390	83	0	0.00	66	12	15.38	-	-	-
ALOX15B	0	genome.wustl.edu	37	17	7948280	7948281	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	7948280	7948281	AG	-	DEL	ALOX15B	ENST00000380183	human	ensembl	69_37n	+1	known	frame_shift_del	c.810_811	p.L272fs	0.000:0.002	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	162	0	0.00	197	33	14.04	-	-	-
ARHGAP35	0	genome.wustl.edu	37	19	47440520	47440520	+	Splice_Site	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	47440520	47440520	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	+1	known	splice_site	c.3682-1	e2-1	1.000	-	-	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	66	0	0.00	76	18	19.15	-	-	-
ARHGEF7	0	genome.wustl.edu	37	13	111938540	111938540	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	111938540	111938540	G	T	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	+1	known	missense	c.2060	p.R687L	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	43	0	0.00	46	24	34.29	-	-	-
ASB4	0	genome.wustl.edu	37	7	95157289	95157289	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	95157289	95157289	T	C	SNP	ASB4	ENST00000325885	human	ensembl	69_37n	+1	known	missense	c.652	p.W218R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981	44	0	0.00	82	12	12.77	-	-	-
ATN1	0	genome.wustl.edu	37	12	7050171	7050171	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	7050171	7050171	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	+1	known	missense	c.3343	p.R1115C	1.000	pfam_Atrophin-like,prints_Atrophin-1	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	78	0	0.00	108	13	10.74	-	-	-
BAZ2B	0	genome.wustl.edu	37	2	160318673	160318673	+	RNA	DEL	A	A	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	160318673	160318673	A	-	DEL	BAZ2B	ENST00000483316	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	18	0	0.00	9	4	28.57	-	-	-
BLM	0	genome.wustl.edu	37	15	91304486	91304486	+	Splice_Site	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	91304486	91304486	G	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	+1	known	splice_site	c.1882+1	e6+1	1.000	-	-	-	no_errors	BLM	HGNC	ENSG00000197299	18	0	0.00	31	5	13.89	-	-	-
C1orf63	0	genome.wustl.edu	37	1	25572984	25572985	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	25572984	25572985	TC	-	DEL	C1orf63	ENST00000417642	human	ensembl	69_37n	-1	known	frame_shift_del	c.450_449	p.R150fs	0.009:0.020	NULL	NULL	-	no_errors	C1orf63	HGNC	ENSG00000117616	65	0	0.00	75	9	10.71	-	-	-
C21orf2	0	genome.wustl.edu	37	21	45750001	45750001	+	RNA	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	21	45750001	45750001	G	C	SNP	C21orf2	ENST00000470196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C21orf2	HGNC	ENSG00000160226	25	0	0.00	29	6	17.14	-	-	-
CALD1	0	genome.wustl.edu	37	7	134644791	134644791	+	Missense_Mutation	SNP	C	C	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	134644791	134644791	C	G	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	+1	known	missense	c.1441	p.R481G	1.000	pfam_Caldesmon_LSP,prints_Caldesmon	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	53	0	0.00	81	11	11.96	-	-	-
CAMK2B	0	genome.wustl.edu	37	7	44260459	44260459	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	44260459	44260459	C	T	SNP	CAMK2B	ENST00000395749	human	ensembl	69_37n	-1	known	missense	c.1639	p.E547K	0.999	pfam_Ca/CaM-dep_prot_kinase-assoc	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404	103	0	0.00	109	38	25.85	-	-	-
CEP120	0	genome.wustl.edu	37	5	122748104	122748104	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	5	122748104	122748104	C	T	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	missense	c.452	p.R151Q	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	51	0	0.00	45	12	21.05	-	-	-
CHKA	0	genome.wustl.edu	37	11	67864505	67864505	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	67864505	67864505	T	C	SNP	CHKA	ENST00000265689	human	ensembl	69_37n	-1	known	missense	c.443	p.Y148C	0.999	pfam_Choline/ethanolamine_kinase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKA	HGNC	ENSG00000110721	30	0	0.00	17	10	37.04	-	-	-
CHTF18	0	genome.wustl.edu	37	16	845727	845727	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	845727	845727	C	A	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	+1	known	missense	c.2845	p.L949M	0.692	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	46	0	0.00	52	21	28.77	-	-	-
CLUL1	0	genome.wustl.edu	37	18	596992	596992	+	RNA	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	18	596992	596992	T	G	SNP	CLUL1	ENST00000579912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLUL1	HGNC	ENSG00000079101	15	0	0.00	10	4	28.57	-	-	-
COA1	0	genome.wustl.edu	37	7	43687050	43687050	+	RNA	SNP	A	A	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	43687050	43687050	A	C	SNP	COA1	ENST00000459713	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.577	-	-	-	no_errors	COA1	HGNC	ENSG00000106603	42	0	0.00	60	10	14.29	-	-	-
COL7A1	0	genome.wustl.edu	37	3	48617226	48617226	+	Silent	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	48617226	48617226	T	G	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.5146	p.R1716	0.036	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	32	0	0.00	39	10	20.41	-	-	-
CROCC	0	genome.wustl.edu	37	1	17250935	17250935	+	Silent	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	17250935	17250935	C	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	+1	known	silent	c.312	p.R104	0.121	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	58	0	0.00	68	19	21.84	-	-	-
CUL5	0	genome.wustl.edu	37	11	107965648	107965648	+	Silent	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	107965648	107965648	A	G	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	+1	known	silent	c.1677	p.E559	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	60	0	0.00	55	13	19.12	-	-	-
DENND1A	0	genome.wustl.edu	37	9	126392666	126392666	+	Silent	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	9	126392666	126392666	C	T	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	silent	c.612	p.L204	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	16	0	0.00	15	5	25.00	-	-	-
DLG5	0	genome.wustl.edu	37	10	79552005	79552005	+	RNA	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	79552005	79552005	G	T	SNP	DLG5	ENST00000463362	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DLG5	HGNC	ENSG00000151208	29	0	0.00	15	10	40.00	-	-	-
DYNC2H1	0	genome.wustl.edu	37	11	103006345	103006346	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	103006345	103006346	AT	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	+1	known	frame_shift_del	c.2327_2328	p.I777fs	0.998:0.918	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	41	0	0.00	40	13	24.53	-	-	-
EFNA4	0	genome.wustl.edu	37	1	155039911	155039911	+	Missense_Mutation	SNP	A	A	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	155039911	155039911	A	T	SNP	EFNA4	ENST00000427683	human	ensembl	69_37n	+1	known	missense	c.464	p.E155V	1.000	pfam_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA4	HGNC	ENSG00000243364	101	0	0.00	90	14	13.46	-	-	-
FAM116A	0	genome.wustl.edu	37	3	57627445	57627445	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	57627445	57627445	G	A	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	missense	c.1067	p.P356L	1.000	pfam_Afi1_N,pfam_DENN_dom	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	49	0	0.00	60	7	10.45	-	-	-
FAM194A	0	genome.wustl.edu	37	3	150421606	150421606	+	Missense_Mutation	SNP	T	T	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	150421606	150421606	T	A	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	missense	c.80	p.E27V	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	33	0	0.00	37	12	24.00	-	-	-
FAM75D1	0	genome.wustl.edu	37	9	84609281	84609281	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	9	84609281	84609281	C	A	SNP	FAM75D1	ENST00000344803	human	ensembl	69_37n	+1	known	missense	c.3896	p.P1299H	0.000	NULL	NULL	-	no_errors	FAM75D1	HGNC	ENSG00000214929	41	0	0.00	55	15	21.43	-	-	-
FLYWCH1	0	genome.wustl.edu	37	16	2990083	2990083	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	2990083	2990083	C	A	SNP	FLYWCH1	ENST00000399667	human	ensembl	69_37n	+1	known	missense	c.2248	p.Q750K	0.146	NULL	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	59	0	0.00	71	9	11.25	-	-	-
FMN2	0	genome.wustl.edu	37	1	240371079	240371079	+	Silent	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	240371079	240371079	T	G	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	+1	known	silent	c.2967	p.P989	0.357	pfam_Formin_homology_1,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	8	0	0.00	10	8	44.44	-	-	-
FREM3	0	genome.wustl.edu	37	4	144545279	144545279	+	Missense_Mutation	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	4	144545279	144545279	T	G	SNP	FREM3	ENST00000329798	human	ensembl	69_37n	-1	putative	missense	c.5635	p.I1879L	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM3	HGNC	ENSG00000183090	69	0	0.00	87	13	13.00	-	-	-
GHITM	0	genome.wustl.edu	37	10	85902445	85902445	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	85902445	85902445	G	A	SNP	GHITM	ENST00000372134	human	ensembl	69_37n	+1	known	missense	c.164	p.R55H	1.000	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678	60	0	0.00	52	18	25.71	-	-	-
GOLGA8A	0	genome.wustl.edu	37	15	34674048	34674048	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	34674048	34674048	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	missense	c.1553	p.A518V	0.999	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	8	0	0.00	2	5	71.43	-	-	-
GPR179	0	genome.wustl.edu	37	17	36483415	36483415	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	36483415	36483415	T	C	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.6037	p.S2013G	0.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	55	0	0.00	57	29	33.72	-	-	-
GPS2	0	genome.wustl.edu	37	17	7216885	7216885	+	Splice_Site	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	7216885	7216885	A	G	SNP	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	splice_site	c.634+2	e6+2	1.000	-	-	-	no_errors	GPS2	HGNC	ENSG00000132522	30	0	0	35	4	10.26	-	-	-
GPT2	0	genome.wustl.edu	37	16	46962906	46962906	+	Silent	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	46962906	46962906	G	C	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	+1	known	silent	c.1569	p.A523	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	38	0	0.00	45	20	30.77	-	-	-
HERC1	0	genome.wustl.edu	37	15	63964739	63964739	+	Silent	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	63964739	63964739	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	silent	c.8001	p.V2667	0.998	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	73	0	0.00	96	17	15.04	-	-	-
KCTD20	0	genome.wustl.edu	37	6	36454815	36454815	+	Missense_Mutation	SNP	C	C	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	6	36454815	36454815	C	G	SNP	KCTD20	ENST00000373731	human	ensembl	69_37n	+1	known	missense	c.1123	p.L375V	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD20	HGNC	ENSG00000112078	38	0	0.00	35	7	16.67	-	-	-
KDM3A	0	genome.wustl.edu	37	2	86693921	86693921	+	Silent	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	86693921	86693921	T	C	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	+1	known	silent	c.1434	p.A478	0.010	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	38	0	0.00	55	12	17.91	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118242398	118242398	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	X	118242398	118242398	T	C	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.814	p.S272G	0.001	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	52	0	0.00	56	14	20.00	-	-	-
KIAA1324	0	genome.wustl.edu	37	1	109737206	109737206	+	Missense_Mutation	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	109737206	109737206	G	C	SNP	KIAA1324	ENST00000369939	human	ensembl	69_37n	+1	known	missense	c.2111	p.C704S	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	27	0	0.00	26	5	16.13	-	-	-
KIF26A	0	genome.wustl.edu	37	14	104641938	104641938	+	Missense_Mutation	SNP	A	A	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	14	104641938	104641938	A	C	SNP	KIF26A	ENST00000423312	human	ensembl	69_37n	+1	known	missense	c.2813	p.K938T	0.976	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	92	0	0.00	56	15	21.13	-	-	-
KLF6	0	genome.wustl.edu	37	10	3824189	3824190	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	3824189	3824190	TC	-	DEL	KLF6	ENST00000497571	human	ensembl	69_37n	-1	known	frame_shift_del	c.320_319	p.D107fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF6	HGNC	ENSG00000067082	58	0	0.00	56	16	22.22	-	-	-
KRT2	0	genome.wustl.edu	37	12	53042059	53042059	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	53042059	53042059	G	T	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	missense	c.1020	p.S340R	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	131	0	0.00	141	21	12.96	-	-	-
LINC00283	0	genome.wustl.edu	37	13	103395563	103395564	+	RNA	DEL	TT	TT	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	103395563	103395564	TT	-	DEL	LINC00283	ENST00000430111	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	LINC00283	HGNC	ENSG00000231633	111	0	0.00	119	28	18.79	-	-	-
LRP2	0	genome.wustl.edu	37	2	170003328	170003328	+	Missense_Mutation	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	170003328	170003328	G	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.12732	p.I4244M	1.000	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	87	0	0.00	106	34	24.29	-	-	-
LRRC33	0	genome.wustl.edu	37	3	196387261	196387261	+	Silent	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	196387261	196387261	C	A	SNP	LRRC33	ENST00000328557	human	ensembl	69_37n	+1	known	silent	c.747	p.A249	0.930	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	86	0	0.00	113	17	13.08	-	-	-
LTF	0	genome.wustl.edu	37	3	46496886	46496886	+	Frame_Shift_Del	DEL	T	T	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	46496886	46496886	T	-	DEL	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	frame_shift_del	c.546	p.G183fs	0.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	93	0	0.00	114	32	21.62	-	-	-
MRE11A	0	genome.wustl.edu	37	11	94194110	94194110	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	94194110	94194110	C	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.1318	p.A440T	0.995	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	50	0	0.00	60	17	22.08	-	-	-
MTSS1L	0	genome.wustl.edu	37	16	70713720	70713720	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	70713720	70713720	C	T	SNP	MTSS1L	ENST00000576338	human	ensembl	69_37n	-1	novel	missense	c.116	p.R39Q	0.370	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTSS1L	HGNC	ENSG00000132613	58	0	0.00	81	17	17.35	-	-	-
MUC16	0	genome.wustl.edu	37	19	9071187	9071187	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	9071187	9071187	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16259	p.T5420I	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	179	0	0.00	195	39	16.67	-	-	-
MUC16	0	genome.wustl.edu	37	19	9072753	9072753	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	9072753	9072753	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.14693	p.R4898M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	114	0	0.00	107	38	26.21	-	-	-
MXD3	0	genome.wustl.edu	37	5	176734175	176734175	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	5	176734175	176734175	C	A	SNP	MXD3	ENST00000427908	human	ensembl	69_37n	-1	known	missense	c.527	p.G176V	0.136	NULL	pfam_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD3	HGNC	ENSG00000213347	47	0	0.00	58	16	21.62	-	-	-
MYH1	0	genome.wustl.edu	37	17	10408575	10408575	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	10408575	10408575	C	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.2340	p.M780I	1.000	smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	65	0	0.00	59	31	34.44	-	-	-
NACAP1	0	genome.wustl.edu	37	8	102381722	102381722	+	RNA	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	8	102381722	102381722	C	A	SNP	NACAP1	ENST00000419462	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NACAP1	HGNC	ENSG00000228224	88	0	0.00	73	23	23.96	-	-	-
NAP1L1	0	genome.wustl.edu	37	12	76447083	76447084	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	76447083	76447084	AT	-	DEL	NAP1L1	ENST00000261182	human	ensembl	69_37n	-1	known	frame_shift_del	c.818_817	p.I273fs	1.000:1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L1	HGNC	ENSG00000187109	15	0	0.00	17	17	50.00	-	-	-
NFE2L3	0	genome.wustl.edu	37	7	26224265	26224265	+	Missense_Mutation	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	26224265	26224265	A	G	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	+1	known	missense	c.947	p.H316R	0.997	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	51	0	0.00	53	23	30.26	-	-	-
OR51I1	0	genome.wustl.edu	37	11	5462607	5462607	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	5462607	5462607	G	T	SNP	OR51I1	ENST00000380211	human	ensembl	69_37n	-1	known	missense	c.138	p.S46R	0.391	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51I1	HGNC	ENSG00000167359	51	0	0.00	53	12	18.46	-	-	-
PARP8	0	genome.wustl.edu	37	5	50090941	50090941	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	5	50090941	50090941	C	T	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	+1	known	missense	c.1118	p.S373L	0.753	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	51	0	0.00	71	19	21.11	-	-	-
PHB2	0	genome.wustl.edu	37	12	7075640	7075640	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	7075640	7075640	G	A	SNP	PHB2	ENST00000546111	human	ensembl	69_37n	-1	putative	missense	c.236	p.S79F	0.946	NULL	NULL	-	no_errors	PHB2	HGNC	ENSG00000215021	113	0	0.00	106	55	34.16	-	-	-
PHF11	0	genome.wustl.edu	37	13	50098311	50098311	+	Nonsense_Mutation	SNP	C	C	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	50098311	50098311	C	G	SNP	PHF11	ENST00000378319	human	ensembl	69_37n	+1	known	nonsense	c.728	p.S243*	0.001	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF11	HGNC	ENSG00000136147	31	0	0.00	43	12	21.82	-	-	-
PI4KB	0	genome.wustl.edu	37	1	151274425	151274425	+	Silent	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	151274425	151274425	G	T	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	silent	c.1680	p.S560	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	36	0	0.00	49	6	10.91	-	-	-
PKP4	0	genome.wustl.edu	37	2	159499112	159499112	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	159499112	159499112	G	T	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	+1	known	missense	c.1810	p.D604Y	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	72	0	0.00	97	33	25.38	-	-	-
PLAC1	0	genome.wustl.edu	37	X	133699960	133699960	+	RNA	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	X	133699960	133699960	T	G	SNP	PLAC1	ENST00000476971	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLAC1	HGNC	ENSG00000170965	30	0	0.00	30	4	11.76	-	-	-
POLR3C	0	genome.wustl.edu	37	1	145608455	145608455	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	145608455	145608455	T	C	SNP	POLR3C	ENST00000334163	human	ensembl	69_37n	-1	known	missense	c.352	p.M118V	1.000	NULL	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141	58	0	0.00	46	35	43.21	-	-	-
PPM1B	0	genome.wustl.edu	37	2	44396108	44396108	+	RNA	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	44396108	44396108	C	T	SNP	PPM1B	ENST00000378540	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032	161	0	0.00	235	71	23.20	-	-	-
PPTC7	0	genome.wustl.edu	37	12	110983717	110983717	+	Silent	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	110983717	110983717	G	C	SNP	PPTC7	ENST00000354300	human	ensembl	69_37n	-1	known	silent	c.570	p.P190	0.201	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPTC7	HGNC	ENSG00000196850	80	0	0.00	70	16	18.60	-	-	-
PTPLAD1	0	genome.wustl.edu	37	15	65849103	65849103	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	65849103	65849103	G	T	SNP	PTPLAD1	ENST00000261875	human	ensembl	69_37n	+1	known	missense	c.231	p.Q77H	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_Tyr_Pase-like_PTPLA,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTPLAD1	HGNC	ENSG00000074696	104	0	0.00	85	13	13.27	-	-	-
RFPL4B	0	genome.wustl.edu	37	6	112671398	112671398	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	6	112671398	112671398	G	A	SNP	RFPL4B	ENST00000441065	human	ensembl	69_37n	+1	known	missense	c.488	p.C163Y	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4B	HGNC	ENSG00000251258	28	0	0.00	34	16	32.00	-	-	-
RFXANK	0	genome.wustl.edu	37	19	19307824	19307824	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	19307824	19307824	C	A	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	+1	known	missense	c.240	p.N80K	0.209	pirsf_DNA-bd_RFXANK	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	48	0	0.00	30	17	36.17	-	-	-
RNA5SP392	0	genome.wustl.edu	37	15	40623824	40623824	+	RNA	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	40623824	40623824	A	G	SNP	RNA5SP392	ENST00000516905	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNA5SP392	HGNC	ENSG00000252714	30	0	0.00	20	4	16.67	-	-	-
SF3B14	0	genome.wustl.edu	37	2	24291245	24291245	+	Silent	SNP	C	C	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	24291245	24291245	C	G	SNP	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	silent	c.234	p.S78	0.972	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	50	0	0.00	58	17	22.67	-	-	-
SLC38A10	0	genome.wustl.edu	37	17	79220047	79220047	+	Missense_Mutation	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	79220047	79220047	T	G	SNP	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	missense	c.2669	p.Q890P	0.008	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	410	0	0.00	200	55	21.57	-	-	-
SLC9A3R1	0	genome.wustl.edu	37	17	72745097	72745097	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	72745097	72745097	T	C	SNP	SLC9A3R1	ENST00000262613	human	ensembl	69_37n	+1	known	missense	c.112	p.Y38H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	pfam_PDZ,pfam_EBP50_C-term,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	-	no_errors	SLC9A3R1	HGNC	ENSG00000109062	16	0	0.00	12	8	40.00	-	-	-
SLTM	0	genome.wustl.edu	37	15	59191708	59191708	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	59191708	59191708	T	C	SNP	SLTM	ENST00000380516	human	ensembl	69_37n	-1	known	missense	c.1018	p.K340E	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	51	0	0.00	45	13	22.41	-	-	-
SMC4	0	genome.wustl.edu	37	3	160132222	160132222	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	160132222	160132222	G	A	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	+1	known	missense	c.1189	p.D397N	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	27	0	0.00	17	4	19.05	-	-	-
SRSF4	0	genome.wustl.edu	37	1	29476663	29476663	+	Missense_Mutation	SNP	C	C	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	29476663	29476663	C	G	SNP	SRSF4	ENST00000373795	human	ensembl	69_37n	-1	known	missense	c.620	p.R207P	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF4	HGNC	ENSG00000116350	49	0	0.00	68	20	22.73	-	-	-
STAM	0	genome.wustl.edu	37	10	17730056	17730056	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	17730056	17730056	G	A	SNP	STAM	ENST00000377524	human	ensembl	69_37n	+1	known	missense	c.328	p.A110T	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738	34	0	0.00	42	7	14.29	-	-	-
TAF7L	0	genome.wustl.edu	37	X	100537337	100537337	+	Missense_Mutation	SNP	T	T	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	X	100537337	100537337	T	A	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.642	p.E214D	0.987	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	107	0	0.00	131	19	12.67	-	-	-
TARDBP	0	genome.wustl.edu	37	1	11076915	11076915	+	Missense_Mutation	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	11076915	11076915	A	G	SNP	TARDBP	ENST00000240185	human	ensembl	69_37n	+1	known	missense	c.253	p.M85V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TARDBP	HGNC	ENSG00000120948	45	0	0.00	72	24	25.00	-	-	-
TCF4	0	genome.wustl.edu	37	18	53017614	53017614	+	Missense_Mutation	SNP	T	T	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	18	53017614	53017614	T	G	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.831	p.K277N	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	43	0	0.00	36	10	21.74	-	-	-
TGDS	0	genome.wustl.edu	37	13	95248374	95248374	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	95248374	95248374	C	A	SNP	TGDS	ENST00000261296	human	ensembl	69_37n	-1	known	missense	c.17	p.W6L	0.000	NULL	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	-	no_errors	TGDS	HGNC	ENSG00000088451	51	0	0.00	59	29	32.95	-	-	-
TMEM133	0	genome.wustl.edu	37	11	100863339	100863340	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	100863339	100863340	TG	-	DEL	TMEM133	ENST00000303130	human	ensembl	69_37n	+1	known	frame_shift_del	c.300_301	p.V101fs	0.000:0.000	NULL	NULL	-	no_errors	TMEM133	HGNC	ENSG00000170647	88	0	0.00	94	14	12.96	-	-	-
TNC	0	genome.wustl.edu	37	9	117825203	117825203	+	Silent	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	9	117825203	117825203	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.4026	p.V1342	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	71	0	0.00	121	21	14.79	-	-	-
TOM1L1	0	genome.wustl.edu	37	17	53026927	53026927	+	Missense_Mutation	SNP	A	A	G			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	53026927	53026927	A	G	SNP	TOM1L1	ENST00000575882	human	ensembl	69_37n	+1	known	missense	c.1231	p.T411A	0.001	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L1	HGNC	ENSG00000141198	32	0	0.00	20	9	31.03	-	-	-
TP53	0	genome.wustl.edu	37	17	7579536	7579536	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	7579536	7579536	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.151	p.E51*	0.001	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0.00	37	20	35.09	-	-	-
TUBA4B	0	genome.wustl.edu	37	2	220118076	220118077	+	RNA	INS	-	-	GG			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	220118076	220118077	-	GG	INS	TUBA4B	ENST00000473885	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.812:0.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910	10	0	0.00	9	4	30.77	-	-	-
TUBB8	0	genome.wustl.edu	37	10	93894	93894	+	Silent	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	93894	93894	C	A	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	silent	c.438	p.G146	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	253	0	0.00	300	67	18.26	-	-	-
TXNDC2	0	genome.wustl.edu	37	18	9887913	9887913	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	18	9887913	9887913	G	T	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	+1	known	missense	c.1437	p.W479C	0.994	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	65	0	0.00	85	14	14.14	-	-	-
USP34	0	genome.wustl.edu	37	2	61607496	61607496	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	61607496	61607496	C	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.822	p.R274S	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	11	0	0.00	18	5	21.74	-	-	-
VSIG8	0	genome.wustl.edu	37	1	159832270	159832273	+	Frame_Shift_Del	DEL	CAGG	CAGG	-			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	CAGG	CAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	159832270	159832273	CAGG	-	DEL	VSIG8	ENST00000368100	human	ensembl	69_37n	-1	known	frame_shift_del	c.42_39	p.C13fs	1.000:1.000:1.000:1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	VSIG8	HGNC	ENSG00000243284	98	0	0.00	81	45	35.16	-	-	-
WSCD2	0	genome.wustl.edu	37	12	108634216	108634216	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	108634216	108634216	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	+1	known	missense	c.1240	p.A414T	0.994	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	33	0	0.00	51	8	13.56	-	-	-
XRCC6	0	genome.wustl.edu	37	22	42032720	42032720	+	Missense_Mutation	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	22	42032720	42032720	G	C	SNP	XRCC6	ENST00000359308	human	ensembl	69_37n	+1	known	missense	c.535	p.D179H	1.000	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,tigrfam_DNA_helicase_ATP-dep_Ku70	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,pfam_SAP_DNA-bd,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd,tigrfam_DNA_helicase_ATP-dep_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419	45	0	0.00	43	18	29.51	-	-	-
XRRA1	0	genome.wustl.edu	37	11	74660143	74660143	+	RNA	SNP	G	G	C			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	74660143	74660143	G	C	SNP	XRRA1	ENST00000524430	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	XRRA1	HGNC	ENSG00000166435	22	0	0.00	34	6	15.00	-	-	-
ZFHX4	0	genome.wustl.edu	37	8	77767800	77767800	+	Silent	SNP	C	C	T			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	8	77767800	77767800	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	+1	known	silent	c.8643	p.D2881	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	25	0	0.00	33	4	10.81	-	-	-
ZNF610	0	genome.wustl.edu	37	19	52857606	52857606	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	52857606	52857606	G	A	SNP	ZNF610	ENST00000327920	human	ensembl	69_37n	+1	known	missense	c.293	p.R98K	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554	23	0	0.00	24	6	20.00	-	-	-
ZSCAN1	0	genome.wustl.edu	37	19	58565195	58565195	+	Missense_Mutation	SNP	C	C	A			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	58565195	58565195	C	A	SNP	ZSCAN1	ENST00000282326	human	ensembl	69_37n	+1	known	missense	c.1003	p.L335I	0.416	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	69	0	0.00	80	15	15.79	-	-	-
