Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AKAP13	0	genome.wustl.edu	37	15	86266397	86266397	+	Silent	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	15	86266397	86266397	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	+1	known	silent	c.6603	p.K2201	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	31	0	0.00	11	10	47.62	-	-	-
AMPD3	0	genome.wustl.edu	37	11	10521756	10521756	+	Missense_Mutation	SNP	T	T	C			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	10521756	10521756	T	C	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	+1	known	missense	c.1681	p.Y561H	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	52	0	0.00	46	32	41.03	-	-	-
ANXA5	0	genome.wustl.edu	37	4	122607522	122607522	+	Silent	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	4	122607522	122607522	G	A	SNP	ANXA5	ENST00000296511	human	ensembl	69_37n	-1	known	silent	c.15	p.L5	0.199	superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinV,prints_AnnexinIV	-	no_errors	ANXA5	HGNC	ENSG00000164111	34	0	0.00	15	11	42.31	-	-	-
ARHGAP32	0	genome.wustl.edu	37	11	128842567	128842567	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	128842567	128842567	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	missense	c.3792	p.M1264I	0.546	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	34	0	0.00	31	13	29.55	-	-	-
BAZ2A	0	genome.wustl.edu	37	12	56995558	56995558	+	Silent	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	12	56995558	56995558	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	silent	c.3849	p.L1283	0.989	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	37	0	0.00	30	23	43.40	-	-	-
BAZ2A	0	genome.wustl.edu	37	12	56995588	56995588	+	Silent	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	12	56995588	56995588	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	silent	c.3819	p.L1273	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	41	0	0.00	37	20	35.09	-	-	-
BIRC6	0	genome.wustl.edu	37	2	32718729	32718729	+	Silent	SNP	T	T	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	2	32718729	32718729	T	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	+1	known	silent	c.8463	p.T2821	0.996	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	96	0	0.00	92	35	27.56	-	-	-
BTBD19	0	genome.wustl.edu	37	1	45279094	45279094	+	Missense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	45279094	45279094	G	A	SNP	BTBD19	ENST00000450269	human	ensembl	69_37n	+1	known	missense	c.664	p.E222K	0.994	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD19	HGNC	ENSG00000222009	14	0	0.00	13	7	35.00	-	-	-
C1orf192	0	genome.wustl.edu	37	1	161336022	161336023	+	In_Frame_Ins	INS	-	-	GAT			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	161336022	161336023	-	GAT	INS	C1orf192	ENST00000367974	human	ensembl	69_37n	-1	known	in_frame_ins	c.137_136	p.46in_frame_insH	1.000:0.997	NULL	NULL	-	no_errors	C1orf192	HGNC	ENSG00000188931	67	0	0.00	35	21	37.50	-	-	-
C5orf45	0	genome.wustl.edu	37	5	179280201	179280201	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	5	179280201	179280201	C	T	SNP	C5orf45	ENST00000403396	human	ensembl	69_37n	-1	known	missense	c.248	p.G83E	0.004	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010	50	0	0.00	44	15	25.42	-	-	-
CATSPER4	0	genome.wustl.edu	37	1	26528990	26528990	+	Missense_Mutation	SNP	C	C	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	26528990	26528990	C	G	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	+1	known	missense	c.1376	p.S459C	0.251	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	66	0	0.00	29	39	57.35	-	-	-
CCDC168	0	genome.wustl.edu	37	13	103382504	103382504	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	13	103382504	103382504	C	T	SNP	CCDC168	ENST00000322527	human	ensembl	69_37n	-1	known	missense	c.6656	p.R2219K	0.000	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	48	0	0.00	19	27	58.70	-	-	-
CCDC92	0	genome.wustl.edu	37	12	124427988	124427988	+	Missense_Mutation	SNP	G	G	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	12	124427988	124427988	G	T	SNP	CCDC92	ENST00000238156	human	ensembl	69_37n	-1	known	missense	c.87	p.S29R	0.582	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242	76	0	0.00	39	19	32.76	-	-	-
CDH1	0	genome.wustl.edu	37	16	68845757	68845757	+	Nonsense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	16	68845757	68845757	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.1003	p.R335*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	45	0	0.00	22	19	46.34	-	-	-
CHRNA6	0	genome.wustl.edu	37	8	42623707	42623707	+	RNA	SNP	C	C	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	8	42623707	42623707	C	A	SNP	CHRNA6	ENST00000530869	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	CHRNA6	HGNC	ENSG00000147434	18	0	0.00	7	8	53.33	-	-	-
CSRP1	0	genome.wustl.edu	37	1	201455910	201455910	+	RNA	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	201455910	201455910	C	T	SNP	CSRP1	ENST00000458271	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSRP1	HGNC	ENSG00000159176	8	0	0.00	10	6	37.50	-	-	-
CTAGE5	0	genome.wustl.edu	37	14	39760281	39760281	+	Missense_Mutation	SNP	C	C	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	14	39760281	39760281	C	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	+1	known	missense	c.365	p.T122K	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	57	0	0.00	46	20	30.30	-	-	-
DENND2A	0	genome.wustl.edu	37	7	140246714	140246714	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	7	140246714	140246714	C	T	SNP	DENND2A	ENST00000275884	human	ensembl	69_37n	-1	known	missense	c.2063	p.R688Q	0.998	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	67	0	0.00	56	26	31.71	-	-	-
DUOX2	0	genome.wustl.edu	37	15	45398769	45398769	+	Silent	SNP	G	G	C			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	15	45398769	45398769	G	C	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.1902	p.L634	0.973	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	67	0	0.00	18	26	59.09	-	-	-
ERC2	0	genome.wustl.edu	37	3	56468948	56468948	+	Nonsense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	56468948	56468948	G	A	SNP	ERC2	ENST00000288221	human	ensembl	69_37n	-1	known	nonsense	c.88	p.R30*	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	95	0	0.00	56	32	36.36	-	-	-
FAM47B	0	genome.wustl.edu	37	X	34961515	34961515	+	Silent	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	34961515	34961515	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	+1	known	silent	c.567	p.P189	0.045	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	96	0	0.00	84	16	16.00	-	-	-
FDPS	0	genome.wustl.edu	37	1	155279519	155279519	+	RNA	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	155279519	155279519	C	T	SNP	FDPS	ENST00000487002	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FDPS	HGNC	ENSG00000160752	23	0	0.00	10	10	50.00	-	-	-
FDPS	0	genome.wustl.edu	37	1	155290290	155290290	+	Missense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	155290290	155290290	G	A	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	+1	known	missense	c.1150	p.E384K	1.000	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	54	0	0.00	66	36	35.29	-	-	-
FILIP1	0	genome.wustl.edu	37	6	76124553	76124553	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	6	76124553	76124553	C	T	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.136	p.E46K	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	63	0	0.00	51	29	36.25	-	-	-
FOXO4	0	genome.wustl.edu	37	X	70321266	70321266	+	Missense_Mutation	SNP	C	C	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	70321266	70321266	C	G	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	+1	known	missense	c.1186	p.L396V	0.967	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	19	0	0.00	19	13	40.62	-	-	-
FRMPD4	0	genome.wustl.edu	37	X	12516808	12516808	+	Silent	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	12516808	12516808	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	+1	known	silent	c.51	p.T17	0.678	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	24	0	0.00	25	10	28.57	-	-	-
HPN	0	genome.wustl.edu	37	19	35551280	35551280	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	35551280	35551280	C	T	SNP	HPN	ENST00000262626	human	ensembl	69_37n	+1	known	missense	c.484	p.R162C	1.000	superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Hepsin-SRCR,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707	64	0	0.00	55	8	12.70	-	-	-
IGKV1D-16	0	genome.wustl.edu	37	2	90139522	90139522	+	Missense_Mutation	SNP	G	G	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	2	90139522	90139522	G	T	SNP	IGKV1D-16	ENST00000492446	human	ensembl	69_37n	+1	known	missense	c.293	p.S98I	1.000	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV1D-16	HGNC	ENSG00000241244	135	0	0.00	81	68	45.64	-	-	-
KIAA0513	0	genome.wustl.edu	37	16	85100730	85100730	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	16	85100730	85100730	C	T	SNP	KIAA0513	ENST00000258180	human	ensembl	69_37n	+1	known	missense	c.53	p.A18V	0.002	NULL	pfam_SBF2	-	no_errors	KIAA0513	HGNC	ENSG00000135709	48	0	0.00	34	13	27.08	-	-	-
KIAA2018	0	genome.wustl.edu	37	3	113378576	113378577	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	113378576	113378577	AG	-	DEL	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	frame_shift_del	c.1953_1952	p.T651fs	0.883:0.898	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	36	0	0.00	55	17	23.29	-	-	-
LCMT2	0	genome.wustl.edu	37	15	43622012	43622012	+	Missense_Mutation	SNP	C	C	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	15	43622012	43622012	C	A	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.676	p.A226S	0.997	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	104	0	0.00	37	36	49.32	-	-	-
LEPRE1	0	genome.wustl.edu	37	1	43218275	43218275	+	Missense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	43218275	43218275	G	A	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469F	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	48	0	0.00	27	18	40.00	-	-	-
LINC00281	0	genome.wustl.edu	37	22	21660920	21660920	+	RNA	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	22	21660920	21660920	G	A	SNP	LINC00281	ENST00000416615	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	LINC00281	HGNC	ENSG00000206142	10	0	0.00	10	6	37.50	-	-	-
MEIS3	0	genome.wustl.edu	37	19	47910643	47910643	+	Missense_Mutation	SNP	C	C	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	47910643	47910643	C	G	SNP	MEIS3	ENST00000559524	human	ensembl	69_37n	-1	known	missense	c.1039	p.D347H	1.000	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS3	HGNC	ENSG00000105419	106	1	0.93	84	42	33.33	-	-	-
MUC2	0	genome.wustl.edu	37	11	1093104	1093104	+	Silent	SNP	C	C	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	1093104	1093104	C	A	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	+1	known	silent	c.4923	p.T1641	0.095	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	313	2	0.63	345	40	10.36	-	-	-
MUC4	0	genome.wustl.edu	37	3	195477775	195477775	+	Missense_Mutation	SNP	G	G	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	195477775	195477775	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.15856	p.R5286S	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	54	0	0.00	56	24	30.00	-	-	-
NKRF	0	genome.wustl.edu	37	X	118724234	118724234	+	Missense_Mutation	SNP	T	T	C			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	118724234	118724234	T	C	SNP	NKRF	ENST00000542113	human	ensembl	69_37n	-1	known	missense	c.1199	p.H400R	1.000	smart_Ds-RNA-bd	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_Ds-RNA-bd,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416	74	0	0.00	73	13	15.12	-	-	-
NKX2-6	0	genome.wustl.edu	37	8	23560250	23560250	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	8	23560250	23560250	C	T	SNP	NKX2-6	ENST00000418222	human	ensembl	69_37n	-1	known	missense	c.374	p.R125Q	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	NKX2-6	HGNC	ENSG00000180053	108	0	0.00	62	41	39.81	-	-	-
NT5C3	0	genome.wustl.edu	37	7	33054388	33054388	+	Missense_Mutation	SNP	T	T	C			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	7	33054388	33054388	T	C	SNP	NT5C3	ENST00000242210	human	ensembl	69_37n	-1	known	missense	c.965	p.D322G	1.000	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3	HGNC	ENSG00000122643	46	0	0.00	52	6	10.17	-	-	-
NUP155	0	genome.wustl.edu	37	5	37371053	37371053	+	Silent	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	5	37371053	37371053	C	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	silent	c.27	p.A9	0.001	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	16	0	0.00	15	6	28.57	-	-	-
OR52B4	0	genome.wustl.edu	37	11	4389026	4389026	+	Missense_Mutation	SNP	C	C	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	4389026	4389026	C	G	SNP	OR52B4	ENST00000408920	human	ensembl	69_37n	-1	known	missense	c.500	p.R167T	0.028	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996	19	0	0.00	13	8	38.10	-	-	-
OR8I2	0	genome.wustl.edu	37	11	55861250	55861250	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	55861250	55861250	C	T	SNP	OR8I2	ENST00000302124	human	ensembl	69_37n	+1	known	missense	c.467	p.S156L	0.755	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154	51	0	0.00	37	19	33.93	-	-	-
PALMD	0	genome.wustl.edu	37	1	100151978	100151978	+	RNA	SNP	G	G	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	100151978	100151978	G	T	SNP	PALMD	ENST00000496843	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PALMD	HGNC	ENSG00000099260	8	0	0.00	1	8	88.89	-	-	-
PCSK2	0	genome.wustl.edu	37	20	17207983	17207983	+	Silent	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	17207983	17207983	G	A	SNP	PCSK2	ENST00000262545	human	ensembl	69_37n	+1	known	silent	c.33	p.A11	1.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	40	0	0.00	29	36	55.38	-	-	-
PHACTR3	0	genome.wustl.edu	37	20	58349311	58349311	+	Missense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	58349311	58349311	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	+1	known	missense	c.940	p.E314K	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	28	0	0.00	18	12	40.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	25	0	0.00	10	12	54.55	-	-	-
PRDM2	0	genome.wustl.edu	37	1	14105230	14105230	+	Missense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	14105230	14105230	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	+1	known	missense	c.940	p.E314K	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	17	0	0.00	25	6	19.35	-	-	-
RABGGTB	0	genome.wustl.edu	37	1	76253360	76253360	+	RNA	SNP	A	A	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	76253360	76253360	A	T	SNP	RABGGTB	ENST00000496055	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	19	0	0.00	3	10	76.92	-	-	-
RBP3	0	genome.wustl.edu	37	10	48383987	48383987	+	Splice_Site	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	10	48383987	48383987	C	T	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	splice_site	c.3246-1	e3-1	1.000	-	-	-	no_errors	RBP3	HGNC	ENSG00000107618	85	0	0.00	62	35	36.08	-	-	-
RNU11	0	genome.wustl.edu	37	1	28975227	28975227	+	RNA	SNP	C	C	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	28975227	28975227	C	A	SNP	RNU11	ENST00000387069	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNU11	HGNC	ENSG00000209804	72	0	0.00	23	23	50.00	-	-	-
SEPT4	0	genome.wustl.edu	37	17	56598421	56598421	+	Missense_Mutation	SNP	C	C	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	17	56598421	56598421	C	G	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	missense	c.1260	p.E420D	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	27	0	0.00	18	13	41.94	-	-	-
SEPT4	0	genome.wustl.edu	37	17	56598442	56598442	+	Silent	SNP	C	C	G			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	17	56598442	56598442	C	G	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	silent	c.1239	p.V413	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	26	0	0.00	14	12	46.15	-	-	-
SGK223	0	genome.wustl.edu	37	8	8234883	8234883	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	8	8234883	8234883	C	T	SNP	SGK223	ENST00000330777	human	ensembl	69_37n	-1	known	missense	c.1036	p.G346S	0.010	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRAGMIN	Clone_based_vega_gene	ENSG00000182319	124	1	0.80	120	14	10.45	-	-	-
SHANK1	0	genome.wustl.edu	37	19	51201173	51201173	+	Silent	SNP	G	G	C			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	51201173	51201173	G	C	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	silent	c.1788	p.V596	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	80	0	0.00	77	40	34.19	-	-	-
SIGLEC1	0	genome.wustl.edu	37	20	3673774	3673774	+	Silent	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	3673774	3673774	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.3513	p.A1171	0.217	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	84	0	0.00	61	27	30.68	-	-	-
SMEK1	0	genome.wustl.edu	37	14	91975859	91975859	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	14	91975859	91975859	C	T	SNP	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	missense	c.133	p.E45K	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796	20	0	0.00	21	19	47.50	-	-	-
SRSF1	0	genome.wustl.edu	37	17	56083287	56083287	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	17	56083287	56083287	C	T	SNP	SRSF1	ENST00000258962	human	ensembl	69_37n	-1	known	missense	c.427	p.E143K	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF1	HGNC	ENSG00000136450	41	0	0.00	13	14	51.85	-	-	-
TBCCD1	0	genome.wustl.edu	37	3	186281917	186281917	+	Missense_Mutation	SNP	C	C	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	186281917	186281917	C	A	SNP	TBCCD1	ENST00000338733	human	ensembl	69_37n	-1	known	missense	c.202	p.A68S	0.889	NULL	pfam_Tubulin-bd_cofactor_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	TBCCD1	HGNC	ENSG00000113838	46	0	0.00	45	41	47.67	-	-	-
TNR	0	genome.wustl.edu	37	1	175332859	175332861	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	175332859	175332861	ATG	-	DEL	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	in_frame_del	c.2692_2690	p.S897in_frame_del	0.997:0.206:0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	61	0	0.00	65	17	20.73	-	-	-
TPTE	0	genome.wustl.edu	37	21	10907021	10907021	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	21	10907021	10907021	C	T	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.1540	p.E514K	0.904	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	131	0	0.00	89	17	16.04	-	-	-
WASH6P	0	genome.wustl.edu	37	X	155254556	155254556	+	RNA	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	155254556	155254556	C	T	SNP	WASH6P	ENST00000461007	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	WASH6P	HGNC	ENSG00000182484	14	0	0.00	9	5	35.71	-	-	-
WNT16	0	genome.wustl.edu	37	7	120969357	120969357	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	7	120969357	120969357	C	T	SNP	WNT16	ENST00000222462	human	ensembl	69_37n	+1	known	missense	c.11	p.A4V	0.999	prints_Wnt16	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	124	1	0.80	82	54	39.13	-	-	-
XIRP2	0	genome.wustl.edu	37	2	168099266	168099266	+	Missense_Mutation	SNP	C	C	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	2	168099266	168099266	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	+1	known	missense	c.1364	p.P455L	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	45	0	0.00	30	17	36.17	-	-	-
ZMYM3	0	genome.wustl.edu	37	X	70462162	70462162	+	Frame_Shift_Del	DEL	A	A	-			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	70462162	70462162	A	-	DEL	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_del	c.3666	p.F1222fs	0.992	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	87	0	0.00	62	28	31.11	-	-	-
ZNF334	0	genome.wustl.edu	37	20	45130540	45130540	+	Missense_Mutation	SNP	G	G	T			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	45130540	45130540	G	T	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.1438	p.Q480K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	52	0	0.00	53	28	34.57	-	-	-
ZNF507	0	genome.wustl.edu	37	19	32845390	32845390	+	Missense_Mutation	SNP	G	G	A			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	32845390	32845390	G	A	SNP	ZNF507	ENST00000311921	human	ensembl	69_37n	+1	known	missense	c.1654	p.D552N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813	26	0	0.00	15	13	46.43	-	-	-
