#version 2.4
## 
## Oncotator v1.8.0.0 | Flat File Reference hg19 | GENCODE v19 EFFECT | UniProt_AAxform 2014_12 | ClinVar 12.03.20 | ESP 6500SI-V2 | ORegAnno UCSC Track | dbSNP build 142 | CCLE_By_GP 09292010 | COSMIC v62_291112 | 1000gp3 20130502 | UniProt_AA 2014_12 | dbNSFP v2.4 | ESP 6500SI-V2 | COSMIC_FusionGenes v62_291112 | gencode_xref_refseq metadata_v19 | CCLE_By_Gene 09292010 | ACHILLES_Lineage_Results 110303 | CGC full_2012-03-15 | UniProt 2014_12 | HumanDNARepairGenes 20110905 | HGNC Sept172014 | COSMIC_Tissue 291112 | Familial_Cancer_Genes 20110905 | TUMORScape 20100104 | Ensembl ICGC MUCOPA | TCGAScape 110405 | MutSig Published Results 20110905 
Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	i_1000gp3_AA	i_1000gp3_AC	i_1000gp3_AF	i_1000gp3_AFR_AF	i_1000gp3_AMR_AF	i_1000gp3_AN	i_1000gp3_CIEND	i_1000gp3_CIPOS	i_1000gp3_CS	i_1000gp3_DP	i_1000gp3_EAS_AF	i_1000gp3_END	i_1000gp3_EUR_AF	i_1000gp3_IMPRECISE	i_1000gp3_MC	i_1000gp3_MEINFO	i_1000gp3_MEND	i_1000gp3_MLEN	i_1000gp3_MSTART	i_1000gp3_NS	i_1000gp3_SAS_AF	i_1000gp3_SVLEN	i_1000gp3_SVTYPE	i_1000gp3_TSD	i_ACHILLES_Lineage_Results_Top_Genes	i_BAM_File	i_CGC_Cancer Germline Mut	i_CGC_Cancer Molecular Genetics	i_CGC_Cancer Somatic Mut	i_CGC_Cancer Syndrome	i_CGC_Chr	i_CGC_Chr Band	i_CGC_GeneID	i_CGC_Name	i_CGC_Other Germline Mut	i_CGC_Tissue Type	i_COSMIC_n_overlapping_mutations	i_COSMIC_overlapping_mutation_descriptions	i_COSMIC_overlapping_primary_sites	i_ClinVar_ASSEMBLY	i_ClinVar_HGMD_ID	i_ClinVar_SYM	i_ClinVar_TYPE	i_ClinVar_rs	i_ESP_AA	i_ESP_AAC	i_ESP_AA_AC	i_ESP_AA_AGE	i_ESP_AA_GTC	i_ESP_AvgAAsampleReadDepth	i_ESP_AvgEAsampleReadDepth	i_ESP_AvgSampleReadDepth	i_ESP_CA	i_ESP_CDP	i_ESP_CG	i_ESP_CP	i_ESP_Chromosome	i_ESP_DBSNP	i_ESP_DP	i_ESP_EA_AC	i_ESP_EA_AGE	i_ESP_EA_GTC	i_ESP_EXOME_CHIP	i_ESP_FG	i_ESP_GL	i_ESP_GM	i_ESP_GS	i_ESP_GTC	i_ESP_GTS	i_ESP_GWAS_PUBMED	i_ESP_MAF	i_ESP_PH	i_ESP_PP	i_ESP_Position	i_ESP_TAC	i_ESP_TotalAAsamplesCovered	i_ESP_TotalEAsamplesCovered	i_ESP_TotalSamplesCovered	i_EVS_AA	i_EVS_All	i_EVS_EA	i_Ensembl_so_accession	i_Ensembl_so_term	i_Entrez_Gene_Id	i_Familial_Cancer_Genes_Reference	i_Familial_Cancer_Genes_Synonym	i_HGNC_Accession Numbers	i_HGNC_CCDS IDs	i_HGNC_Chromosome	i_HGNC_Date Modified	i_HGNC_Date Name Changed	i_HGNC_Date Symbol Changed	i_HGNC_Ensembl Gene ID	i_HGNC_Ensembl ID(supplied by Ensembl)	i_HGNC_Enzyme IDs	i_HGNC_Gene family description	i_HGNC_HGNC ID	i_HGNC_Locus Group	i_HGNC_Locus Type	i_HGNC_Name Synonyms	i_HGNC_OMIM ID(supplied by NCBI)	i_HGNC_Previous Names	i_HGNC_Previous Symbols	i_HGNC_Primary IDs	i_HGNC_Pubmed IDs	i_HGNC_Record Type	i_HGNC_RefSeq(supplied by NCBI)	i_HGNC_Secondary IDs	i_HGNC_Status	i_HGNC_Synonyms	i_HGNC_UCSC ID(supplied by UCSC)	i_HGNC_UniProt ID(supplied by UniProt)	i_HGNC_VEGA IDs	i_HGVS_coding_DNA_change	i_HGVS_genomic_change	i_HGVS_protein_change	i_Mutation_Status	i_ORegAnno_bin	i_Sequence_Source	i_Sequencer	i_Sequencing_Phase	i_UniProt_alt_uniprot_accessions	i_Variant_Classification	i_Variant_Type	i_all_domains_WU	i_amino_acid_change_WU	i_annotation_transcript	i_build	i_c_position_WU	i_ccds_id	i_chromosome_name_WU	i_dbNSFP_1000Gp1_AC	i_dbNSFP_1000Gp1_AF	i_dbNSFP_1000Gp1_AFR_AC	i_dbNSFP_1000Gp1_AFR_AF	i_dbNSFP_1000Gp1_AMR_AC	i_dbNSFP_1000Gp1_AMR_AF	i_dbNSFP_1000Gp1_ASN_AC	i_dbNSFP_1000Gp1_ASN_AF	i_dbNSFP_1000Gp1_EUR_AC	i_dbNSFP_1000Gp1_EUR_AF	i_dbNSFP_Ancestral_allele	i_dbNSFP_CADD_phred	i_dbNSFP_CADD_raw	i_dbNSFP_CADD_raw_rankscore	i_dbNSFP_ESP6500_AA_AF	i_dbNSFP_ESP6500_EA_AF	i_dbNSFP_Ensembl_geneid	i_dbNSFP_Ensembl_transcriptid	i_dbNSFP_FATHMM_pred	i_dbNSFP_FATHMM_rankscore	i_dbNSFP_FATHMM_score	i_dbNSFP_GERP++_NR	i_dbNSFP_GERP++_RS	i_dbNSFP_GERP++_RS_rankscore	i_dbNSFP_Interpro_domain	i_dbNSFP_LRT_Omega	i_dbNSFP_LRT_converted_rankscore	i_dbNSFP_LRT_pred	i_dbNSFP_LRT_score	i_dbNSFP_LR_pred	i_dbNSFP_LR_rankscore	i_dbNSFP_LR_score	i_dbNSFP_MutationAssessor_pred	i_dbNSFP_MutationAssessor_rankscore	i_dbNSFP_MutationAssessor_score	i_dbNSFP_MutationTaster_converted_rankscore	i_dbNSFP_MutationTaster_pred	i_dbNSFP_MutationTaster_score	i_dbNSFP_Polyphen2_HDIV_pred	i_dbNSFP_Polyphen2_HDIV_rankscore	i_dbNSFP_Polyphen2_HDIV_score	i_dbNSFP_Polyphen2_HVAR_pred	i_dbNSFP_Polyphen2_HVAR_rankscore	i_dbNSFP_Polyphen2_HVAR_score	i_dbNSFP_RadialSVM_pred	i_dbNSFP_RadialSVM_rankscore	i_dbNSFP_RadialSVM_score	i_dbNSFP_Reliability_index	i_dbNSFP_SIFT_converted_rankscore	i_dbNSFP_SIFT_pred	i_dbNSFP_SIFT_score	i_dbNSFP_SLR_test_statistic	i_dbNSFP_SiPhy_29way_logOdds	i_dbNSFP_SiPhy_29way_logOdds_rankscore	i_dbNSFP_SiPhy_29way_pi	i_dbNSFP_UniSNP_ids	i_dbNSFP_Uniprot_aapos	i_dbNSFP_Uniprot_acc	i_dbNSFP_Uniprot_id	i_dbNSFP_aaalt	i_dbNSFP_aapos	i_dbNSFP_aapos_FATHMM	i_dbNSFP_aapos_SIFT	i_dbNSFP_aaref	i_dbNSFP_cds_strand	i_dbNSFP_codonpos	i_dbNSFP_fold-degenerate	i_dbNSFP_genename	i_dbNSFP_hg18_pos(1-coor)	i_dbNSFP_phastCons100way_vertebrate	i_dbNSFP_phastCons100way_vertebrate_rankscore	i_dbNSFP_phastCons46way_placental	i_dbNSFP_phastCons46way_placental_rankscore	i_dbNSFP_phastCons46way_primate	i_dbNSFP_phastCons46way_primate_rankscore	i_dbNSFP_phyloP100way_vertebrate	i_dbNSFP_phyloP100way_vertebrate_rankscore	i_dbNSFP_phyloP46way_placental	i_dbNSFP_phyloP46way_placental_rankscore	i_dbNSFP_phyloP46way_primate	i_dbNSFP_phyloP46way_primate_rankscore	i_dbNSFP_refcodon	i_default_gene_name_WU	i_deletion_substructures_WU	i_domain_WU	i_ensembl_gene_id	i_entrez_gene_id	i_gc_content_full	i_gencode_transcript_name	i_gencode_transcript_status	i_gencode_transcript_tags	i_gencode_transcript_type	i_gene_name_WU	i_gene_name_source_WU	i_gene_type	i_havana_transcript	i_normal_ref_reads	i_normal_vaf	i_normal_var_reads	i_reference_WU	i_refseq_mrna_id	i_secondary_variant_classification	i_start_WU	i_stop_WU	i_strand_WU	i_transcript_error_WU	i_transcript_name_WU	i_transcript_source_WU	i_transcript_species_WU	i_transcript_status_WU	i_transcript_version_WU	i_trv_type_WU	i_tumor_ref_reads	i_tumor_vaf	i_tumors_var_reads	i_type_WU	i_ucsc_cons_WU	i_variant_WU
BTN3A1	11119	genome.wustl.edu	37	6	26406396	26406396	+	Silent	SNP	C	C	T	rs2393650	byFrequency	TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr6:26406396C>T	ENST00000289361.6	+	3	713	c.345C>T	c.(343-345)aaC>aaT	p.N115N	BTN3A1_ENST00000425234.2_Silent_p.N115N|BTN3A1_ENST00000414912.2_Silent_p.N115N|BTN3A1_ENST00000476549.2_Silent_p.N115N	NM_001145008.1|NM_001145009.1|NM_007048.5	NP_001138480.1|NP_001138481.1|NP_008979.3	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1	115	Ig-like V-type 1.				activated T cell proliferation (GO:0050798)|cytokine secretion (GO:0050663)|interferon-gamma secretion (GO:0072643)|T cell receptor signaling pathway (GO:0050852)	integral component of membrane (GO:0016021)|plasma membrane (GO:0005886)				breast(1)|endometrium(5)|kidney(3)|large_intestine(6)|lung(8)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	28						GAATACACAACGTCACAGCCT	0.517													C|||	870	0.173722	0.5477	0.0821	5008	,	,		21385	0.0437		0.0179	False		,,,				2504	0.0276					dbGAP											0													3.0	4.0	4.0					6																	26406396		1681	3533	5214	-	-	-	SO:0001819	synonymous_variant	0			U90552	CCDS4608.1, CCDS4609.1, CCDS47388.1, CCDS47389.1	6p22.1	2014-01-14			ENSG00000026950	ENSG00000026950		"""CD molecules"", ""Immunoglobulin superfamily / V-set domain containing"", ""Immunoglobulin superfamily / C2-set domain containing"", ""Butyrophilins"""	1138	protein-coding gene	gene with protein product		613593				9149941	Standard	NM_007048		Approved	BT3.1, BTF5, CD277, BTN3.1	uc003nhv.3	O00481	OTTHUMG00000014449	ENST00000289361.6:c.345C>T	6.37:g.26406396C>T		Somatic		WXS	Illumina GAIIx	Phase_IV	A2A278|A8K2C8|B4DIQ1|B4DRM2|E9PGB4|E9PHG8|Q0P515|Q147X5|Q53F15|Q99420|Q9HCY1	Silent	SNP	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	p.N115	ENST00000289361.6	37	c.345	CCDS4608.1	6																																																																																			BTN3A1	-	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	ENSG00000026950		0.517	BTN3A1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	BTN3A1	HGNC	protein_coding	OTTHUMT00000040112.3	14	0.00	0	C			26406396	26406396	+1	no_errors	ENST00000289361	ensembl	human	known	69_37n	silent	21	25.00	7	SNP	0.000	T
CCNJ	54619	genome.wustl.edu	37	10	97818297	97818297	+	3'UTR	SNP	T	T	C			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr10:97818297T>C	ENST00000265992.5	+	0	1785				ENTPD1-AS1_ENST00000451364.1_RNA|CCNJ_ENST00000465148.2_3'UTR|ENTPD1-AS1_ENST00000452728.1_RNA|CCNJ_ENST00000403870.3_3'UTR|ENTPD1-AS1_ENST00000416301.1_RNA|ENTPD1-AS1_ENST00000454638.1_RNA|ENTPD1-AS1_ENST00000427846.1_RNA|ENTPD1-AS1_ENST00000458228.1_RNA|CCNJ_ENST00000534974.1_3'UTR	NM_001134375.1|NM_001134376.1|NM_019084.4	NP_001127847.1|NP_001127848.1|NP_061957.2	Q5T5M9	CCNJ_HUMAN	cyclin J							nucleus (GO:0005634)				breast(2)|endometrium(2)|kidney(2)|large_intestine(1)|lung(2)|ovary(1)|skin(1)	11				Epithelial(162;6.1e-08)|all cancers(201;2.32e-06)		TGGACAGACTTCAATTTGCCA	0.363																																						dbGAP											0																																										-	-	-	SO:0001624	3_prime_UTR_variant	0			AK001757	CCDS7445.1, CCDS44462.1, CCDS44463.1	10q23.33	2008-05-14			ENSG00000107443	ENSG00000107443			23434	protein-coding gene	gene with protein product						12477932	Standard	NM_019084		Approved	FLJ10895, bA690P14.1	uc010qoq.2	Q5T5M9	OTTHUMG00000018823	ENST00000265992.5:c.*299T>C	10.37:g.97818297T>C		Somatic		WXS	Illumina GAIIx	Phase_IV	B7Z4E7|Q86XL1|Q9NV69	RNA	SNP	-	NULL	ENST00000265992.5	37	NULL	CCDS7445.1	10																																																																																			CCNJ	-	-	ENSG00000107443		0.363	CCNJ-003	KNOWN	basic|CCDS	protein_coding	CCNJ	HGNC	protein_coding	OTTHUMT00000090166.3	45	0.00	0	T	NM_019084		97818297	97818297	+1	no_errors	ENST00000471424	ensembl	human	known	69_37n	rna	46	13.21	7	SNP	0.000	C
CELP	1057	genome.wustl.edu	37	9	135959979	135959979	+	RNA	SNP	C	C	T	rs200376808	byFrequency	TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr9:135959979C>T	ENST00000411440.2	+	0	225					NR_001275.2				carboxyl ester lipase pseudogene																		GCCACATCTTCGCCAGCATCG	0.602																																						dbGAP											0																																										-	-	-			0			L14813		9q34.2	2014-03-18	2003-02-28	2003-03-07	ENSG00000170827	ENSG00000170827			1849	pseudogene	pseudogene			"""carboxyl ester lipase-like (bile salt-stimulated lipase-like)"""	CELL		1639390	Standard	NR_001275		Approved		uc011mcu.1		OTTHUMG00000020857		9.37:g.135959979C>T		Somatic		WXS	Illumina GAIIx	Phase_IV		RNA	SNP	-	NULL	ENST00000411440.2	37	NULL		9																																																																																			CELP	-	-	ENSG00000170827		0.602	CELP-002	KNOWN	basic	processed_transcript	CELP	HGNC	pseudogene	OTTHUMT00000339837.1	9	0.00	0	C	NM_001808		135959979	135959979	+1	no_errors	ENST00000411440	ensembl	human	known	69_37n	rna	4	50.00	4	SNP	0.917	T
CROCCP2	84809	genome.wustl.edu	37	1	16956945	16956945	+	lincRNA	SNP	C	C	T	rs2026444	byFrequency	TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr1:16956945C>T	ENST00000412962.1	-	0	294							Q86T23	CROL1_HUMAN	ciliary rootlet coiled-coil, rootletin pseudogene 2						centrosome organization (GO:0051297)	ciliary rootlet (GO:0035253)											CCCAGGGCTCCCAGGCTCCTC	0.617													.|||	162	0.0323482	0.1127	0.0144	5008	,	,		54192	0.0		0.001	False		,,,				2504	0.002					dbGAP											0																																										-	-	-			0			AK090414		1p36.13	2010-07-08	2010-07-08	2010-07-08	ENSG00000215908	ENSG00000215908			28170	pseudogene	pseudogene			"""ciliary rootlet coiled-coil, rootletin-like 1"""	CROCCL1		12477932	Standard	NR_026752		Approved	MGC12760	uc001azf.3	Q86T23	OTTHUMG00000037884		1.37:g.16956945C>T		Somatic		WXS	Illumina GAIIx	Phase_IV	Q8NF65|Q96FR5|Q9BRE8	RNA	SNP	-	NULL	ENST00000412962.1	37	NULL		1																																																																																			CROCCP2	-	-	ENSG00000215908		0.617	CROCCP2-003	KNOWN	basic	lincRNA	CROCCP2	HGNC	lincRNA	OTTHUMT00000092784.1	13	0.00	0	C	NR_026752.1		16956945	16956945	-1	no_errors	ENST00000362058	ensembl	human	known	69_37n	rna	21	22.22	6	SNP	0.032	T
CRTAC1	55118	genome.wustl.edu	37	10	99640046	99640046	+	Silent	SNP	A	A	G			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr10:99640046A>G	ENST00000370597.3	-	14	2134	c.1779T>C	c.(1777-1779)agT>agC	p.S593S	CRTAC1_ENST00000298819.4_Missense_Mutation_p.V579A|CRTAC1_ENST00000370591.2_Silent_p.S593S|CRTAC1_ENST00000468549.1_5'Flank	NM_018058.6	NP_060528.3	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1	593	EGF-like.					extracellular vesicular exosome (GO:0070062)|proteinaceous extracellular matrix (GO:0005578)	calcium ion binding (GO:0005509)			autonomic_ganglia(1)|breast(1)|endometrium(6)|kidney(3)|large_intestine(7)|lung(6)|ovary(6)|pancreas(1)|prostate(2)|skin(1)|urinary_tract(1)	35		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		CGTAGCCCCGACTGCACTTCT	0.577																																						dbGAP											0													133.0	109.0	117.0					10																	99640046		2203	4300	6503	-	-	-	SO:0001819	synonymous_variant	0			AJ276171	CCDS31266.1, CCDS55723.1	10q22	2007-12-03			ENSG00000095713	ENSG00000095713			14882	protein-coding gene	gene with protein product		606276				11139377	Standard	NM_018058		Approved	FLJ10320, CEP-68, ASPIC1	uc001kou.2	Q9NQ79	OTTHUMG00000018871	ENST00000370597.3:c.1779T>C	10.37:g.99640046A>G		Somatic		WXS	Illumina GAIIx	Phase_IV	B1ALN4|Q5T4F8|Q8N4H6|Q8TE52|Q9NQ78|Q9NQ80|Q9NW46	Missense_Mutation	SNP	pfam_FG-GAP,pfam_UnbV_ASPIC	p.V579A	ENST00000370597.3	37	c.1736	CCDS31266.1	10	.	.	.	.	.	.	.	.	.	.	A	12.89	2.074390	0.36566	.	.	ENSG00000095713	ENST00000413387;ENST00000298819	T;T	0.35789	1.29;1.32	4.39	-0.983	0.10263	.	.	.	.	.	T	0.20210	0.0486	.	.	.	0.80722	D	1	B	0.02656	0.0	B	0.01281	0.0	T	0.07693	-1.0759	8	0.27082	T	0.32	-2.2438	4.7911	0.13248	0.5312:0.0:0.33:0.1388	.	475	Q5T4F6	.	A	475;579	ENSP00000408445:V475A;ENSP00000298819:V579A	ENSP00000298819:V579A	V	-	2	0	CRTAC1	99630036	1.000000	0.71417	0.997000	0.53966	0.985000	0.73830	1.437000	0.34991	-0.063000	0.13065	0.368000	0.22195	GTC	CRTAC1	-	NULL	ENSG00000095713		0.577	CRTAC1-001	KNOWN	basic|CCDS	protein_coding	CRTAC1	HGNC	protein_coding	OTTHUMT00000049754.1	77	0.00	0	A	NM_018058		99640046	99640046	-1	no_errors	ENST00000298819	ensembl	human	known	69_37n	missense	82	12.77	12	SNP	0.998	G
LAMA1	284217	genome.wustl.edu	37	18	6942135	6942135	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr18:6942135G>T	ENST00000389658.3	-	63	9264	c.9171C>A	c.(9169-9171)agC>agA	p.S3057R		NM_005559.3	NP_005550.2	P25391	LAMA1_HUMAN	laminin, alpha 1	3057	Laminin G-like 5. {ECO:0000255|PROSITE- ProRule:PRU00122}.				axon guidance (GO:0007411)|branching involved in salivary gland morphogenesis (GO:0060445)|cell adhesion (GO:0007155)|cell surface receptor signaling pathway (GO:0007166)|epithelial tube branching involved in lung morphogenesis (GO:0060441)|establishment of epithelial cell apical/basal polarity (GO:0045198)|extracellular matrix organization (GO:0030198)|morphogenesis of an epithelial sheet (GO:0002011)|regulation of cell adhesion (GO:0030155)|regulation of cell migration (GO:0030334)|regulation of embryonic development (GO:0045995)|retinal blood vessel morphogenesis (GO:0061304)	basement membrane (GO:0005604)|cell-cell junction (GO:0005911)|extracellular matrix (GO:0031012)|extracellular region (GO:0005576)|extracellular space (GO:0005615)|laminin-1 complex (GO:0005606)|laminin-3 complex (GO:0005608)|proteinaceous extracellular matrix (GO:0005578)	extracellular matrix structural constituent (GO:0005201)|glycosphingolipid binding (GO:0043208)			NS(4)|breast(7)|central_nervous_system(3)|cervix(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(49)|liver(1)|lung(71)|ovary(9)|pancreas(3)|prostate(5)|skin(11)|stomach(7)|upper_aerodigestive_tract(8)|urinary_tract(3)	205		Colorectal(10;0.172)				CGAACGCTCTGCTGAAGTCAA	0.507																																						dbGAP											0													92.0	95.0	94.0					18																	6942135		2203	4300	6503	-	-	-	SO:0001583	missense	0			X58531	CCDS32787.1	18p11.3	2013-03-01			ENSG00000101680	ENSG00000101680		"""Laminins"""	6481	protein-coding gene	gene with protein product		150320		LAMA		2591971	Standard	NM_005559		Approved		uc002knm.3	P25391	OTTHUMG00000133478	ENST00000389658.3:c.9171C>A	18.37:g.6942135G>T	ENSP00000374309:p.Ser3057Arg	Somatic		WXS	Illumina GAIIx	Phase_IV		Missense_Mutation	SNP	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	p.S3057R	ENST00000389658.3	37	c.9171	CCDS32787.1	18	.	.	.	.	.	.	.	.	.	.	G	16.08	3.022811	0.54683	.	.	ENSG00000101680	ENST00000389658	T	0.42131	0.98	5.7	4.83	0.62350	Concanavalin A-like lectin/glucanase (1);Concanavalin A-like lectin/glucanase, subgroup (1);Laminin G domain (1);	0.057307	0.64402	D	0.000003	T	0.63768	0.2539	M	0.73962	2.25	0.46078	D	0.998851	D;D	0.89917	1.0;1.0	D;D	0.76575	0.988;0.988	T	0.66810	-0.5829	10	0.52906	T	0.07	.	14.2366	0.65932	0.0711:0.0:0.9289:0.0	.	3057;387	P25391;B3KSD8	LAMA1_HUMAN;.	R	3057	ENSP00000374309:S3057R	ENSP00000374309:S3057R	S	-	3	2	LAMA1	6932135	1.000000	0.71417	0.999000	0.59377	0.129000	0.20672	3.905000	0.56333	1.421000	0.47157	0.655000	0.94253	AGC	LAMA1	-	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	ENSG00000101680		0.507	LAMA1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	LAMA1	HGNC	protein_coding	OTTHUMT00000257369.1	31	0.00	0	G	NM_005559		6942135	6942135	-1	no_errors	ENST00000389658	ensembl	human	known	69_37n	missense	30	11.43	4	SNP	1.000	T
PDE4DIP	9659	genome.wustl.edu	37	1	145039866	145039866	+	5'UTR	SNP	A	A	G	rs1445033	byFrequency	TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr1:145039866A>G	ENST00000313382.9	-	0	136				PDE4DIP_ENST00000530740.1_Intron|PDE4DIP_ENST00000478649.2_5'Flank|PDE4DIP_ENST00000493130.2_5'Flank|PDE4DIP_ENST00000369348.3_Intron|PDE4DIP_ENST00000369359.4_Intron	NM_001198832.1	NP_001185761	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein						cellular protein complex assembly (GO:0043623)	centrosome (GO:0005813)|cytoplasm (GO:0005737)|Golgi apparatus (GO:0005794)|myofibril (GO:0030016)|nucleus (GO:0005634)	enzyme binding (GO:0019899)			NS(1)|breast(3)|central_nervous_system(2)|cervix(2)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(9)|large_intestine(12)|lung(106)|ovary(8)|prostate(7)|skin(3)|upper_aerodigestive_tract(4)|urinary_tract(2)	176				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GGCTGGACTCAGAGCGGCGCG	0.662			T	PDGFRB	MPD																																	dbGAP		Dom	yes		1	1q12	9659	phosphodiesterase 4D interacting protein (myomegalin)		L	0																																										-	-	-	SO:0001623	5_prime_UTR_variant	0			AB007923, AB007946	CCDS72887.1, CCDS72888.1, CCDS72889.1, CCDS72890.1, CCDS72891.1, CCDS72892.1, CCDS72893.1, CCDS72894.1	1q21.1	2008-07-31	2008-07-31		ENSG00000178104	ENSG00000178104			15580	protein-coding gene	gene with protein product	"""myomegalin"""	608117	"""cardiomyopathy associated 2"""	CMYA2		9455484, 11134006	Standard	NM_022359		Approved	KIAA0477, KIAA0454, MMGL	uc021ouh.1	Q5VU43	OTTHUMG00000013846	ENST00000313382.9:c.-257T>C	1.37:g.145039866A>G		Somatic		WXS	Illumina GAIIx	Phase_IV	A2RU15|O75042|O75065|Q2YDC1|Q5VU42|Q5VU44|Q5VU45|Q5VU46|Q5VU47|Q5VU48|Q5VU49|Q68DU2|Q6AZ93|Q6PK88|Q86T40|Q86TB2|Q8N3W0|Q8TAY9|Q9HCP2|Q9HCP3|Q9HCP4|Q9HCP5	RNA	SNP	-	NULL	ENST00000313382.9	37	NULL	CCDS55628.1	1																																																																																			PDE4DIP	-	-	ENSG00000178104		0.662	PDE4DIP-001	KNOWN	basic|CCDS	protein_coding	PDE4DIP	HGNC	protein_coding	OTTHUMT00000038856.2	10	0.00	0	A	NM_022359		145039866	145039866	-1	no_errors	ENST00000497529	ensembl	human	known	69_37n	rna	10	41.18	7	SNP	0.000	G
PHKB	5257	genome.wustl.edu	37	16	47703133	47703133	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr16:47703133T>C	ENST00000323584.5	+	26	2459	c.2435T>C	c.(2434-2436)cTg>cCg	p.L812P	PHKB_ENST00000455779.1_Missense_Mutation_p.L805P|PHKB_ENST00000299167.8_Missense_Mutation_p.L812P|PHKB_ENST00000566044.1_Missense_Mutation_p.L805P	NM_000293.2	NP_000284.1	Q93100	KPBB_HUMAN	phosphorylase kinase, beta	812					carbohydrate metabolic process (GO:0005975)|generation of precursor metabolites and energy (GO:0006091)|glucose metabolic process (GO:0006006)|glycogen catabolic process (GO:0005980)|glycogen metabolic process (GO:0005977)|small molecule metabolic process (GO:0044281)	cytosol (GO:0005829)|phosphorylase kinase complex (GO:0005964)|plasma membrane (GO:0005886)	hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)|phosphorylase kinase activity (GO:0004689)			breast(2)|central_nervous_system(1)|endometrium(5)|kidney(2)|large_intestine(10)|liver(1)|lung(18)|ovary(1)|skin(1)	41		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TAGGTAACTCTGGGTGCCTTT	0.363																																						dbGAP											0													76.0	75.0	75.0					16																	47703133		2201	4300	6501	-	-	-	SO:0001583	missense	0				CCDS10729.1, CCDS42161.1	16q12-q13	2009-07-10			ENSG00000102893	ENSG00000102893	2.7.11.19		8927	protein-coding gene	gene with protein product		172490					Standard	NM_000293		Approved		uc002eev.4	Q93100	OTTHUMG00000133102	ENST00000323584.5:c.2435T>C	16.37:g.47703133T>C	ENSP00000313504:p.Leu812Pro	Somatic		WXS	Illumina GAIIx	Phase_IV	Q8N4T5	Missense_Mutation	SNP	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	p.L812P	ENST00000323584.5	37	c.2435	CCDS10729.1	16	.	.	.	.	.	.	.	.	.	.	T	22.6	4.310931	0.81358	.	.	ENSG00000102893	ENST00000299167;ENST00000455779;ENST00000323584	D;D	0.88741	-2.42;-2.42	6.17	6.17	0.99709	Glycoside hydrolase 15-related (1);	0.000000	0.85682	D	0.000000	D	0.94840	0.8333	M	0.83012	2.62	0.80722	D	1	D;D;D	0.89917	1.0;0.999;1.0	D;D;D	0.78314	0.989;0.99;0.991	D	0.95270	0.8376	10	0.87932	D	0	-13.4953	16.8222	0.85835	0.0:0.0:0.0:1.0	.	53;812;805	B3KVX5;Q93100;Q93100-4	.;KPBB_HUMAN;.	P	805;805;812	ENSP00000414345:L805P;ENSP00000313504:L812P	ENSP00000299167:L805P	L	+	2	0	PHKB	46260634	1.000000	0.71417	0.993000	0.49108	0.974000	0.67602	7.983000	0.88140	2.371000	0.80710	0.533000	0.62120	CTG	PHKB	-	pfam_Glyco_hydro_15	ENSG00000102893		0.363	PHKB-002	KNOWN	basic|CCDS	protein_coding	PHKB	HGNC	protein_coding	OTTHUMT00000430413.1	41	0.00	0	T			47703133	47703133	+1	no_errors	ENST00000299167	ensembl	human	known	69_37n	missense	24	10.71	3	SNP	1.000	C
PLCB4	5332	genome.wustl.edu	37	20	9460030	9460030	+	3'UTR	SNP	A	A	G	rs138221578	byFrequency	TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr20:9460030A>G	ENST00000378493.1	+	0	3937				PLCB4_ENST00000492632.1_3'UTR|PLCB4_ENST00000278655.4_3'UTR|PLCB4_ENST00000334005.3_3'UTR|PLCB4_ENST00000378473.3_3'UTR|PLCB4_ENST00000378501.2_3'UTR			Q15147	PLCB4_HUMAN	phospholipase C, beta 4						inositol phosphate metabolic process (GO:0043647)|intracellular signal transduction (GO:0035556)|lipid catabolic process (GO:0016042)|small molecule metabolic process (GO:0044281)	cytosol (GO:0005829)|dendrite (GO:0030425)|nucleus (GO:0005634)|postsynaptic density (GO:0014069)|smooth endoplasmic reticulum (GO:0005790)	calcium ion binding (GO:0005509)|phosphatidylinositol phospholipase C activity (GO:0004435)|phospholipase C activity (GO:0004629)|signal transducer activity (GO:0004871)			NS(2)|breast(4)|cervix(1)|endometrium(2)|kidney(4)|large_intestine(11)|liver(4)|lung(34)|ovary(3)|pancreas(1)|prostate(1)|skin(19)|upper_aerodigestive_tract(1)	87						AAAACAGTGCATTAGCAATTT	0.363													A|||	44	0.00878594	0.0325	0.0014	5008	,	,		20441	0.0		0.0	False		,,,				2504	0.0					dbGAP											0																																										-	-	-	SO:0001624	3_prime_UTR_variant	0				CCDS13104.1, CCDS13105.1, CCDS54447.1	20p12	2008-03-18			ENSG00000101333	ENSG00000101333	3.1.4.11		9059	protein-coding gene	gene with protein product		600810				8530101	Standard	NM_000933		Approved		uc021wam.1	Q15147	OTTHUMG00000031853	ENST00000378493.1:c.*394A>G	20.37:g.9460030A>G		Somatic		WXS	Illumina GAIIx	Phase_IV	B7ZLK6|E2QRH8|Q17R56|Q5JYS8|Q5JYS9|Q5JYT0|Q5JYT3|Q5JYT4|Q9BQW5|Q9BQW6|Q9BQW8|Q9UJQ2	RNA	SNP	-	NULL	ENST00000378493.1	37	NULL	CCDS13105.1	20																																																																																			PLCB4	-	-	ENSG00000101333		0.363	PLCB4-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	PLCB4	HGNC	protein_coding	OTTHUMT00000077948.2	24	0.00	0	A			9460030	9460030	+1	no_errors	ENST00000464199	ensembl	human	known	69_37n	rna	33	10.81	4	SNP	1.000	G
PRAMEF5	343068	genome.wustl.edu	37	1	13365921	13365921	+	Missense_Mutation	SNP	A	A	G	rs199562274	byFrequency	TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr1:13365921A>G	ENST00000376168.1	+	3	465	c.365A>G	c.(364-366)cAt>cGt	p.H122R		NM_001013407.1	NP_001013425.1	Q5TYX0	PRAM5_HUMAN	PRAME family member 5	122					negative regulation of apoptotic process (GO:0043066)|negative regulation of cell differentiation (GO:0045596)|negative regulation of retinoic acid receptor signaling pathway (GO:0048387)|negative regulation of transcription, DNA-templated (GO:0045892)|positive regulation of cell proliferation (GO:0008284)					central_nervous_system(1)|kidney(3)	4	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTATGGCCCATGGGTGCTTC	0.488																																						dbGAP											0													1.0	1.0	1.0					1																	13365921		166	346	512	-	-	-	SO:0001583	missense	0				CCDS72708.1	1p36.21	2014-07-15			ENSG00000204502			"""-"""	27995	protein-coding gene	gene with protein product			"""PRAME family member 23"""	PRAMEF23			Standard	NM_001013407		Approved	PRAMEF5L	uc001auu.1	Q5TYX0	OTTHUMG00000009505	ENST00000376168.1:c.365A>G	1.37:g.13365921A>G	ENSP00000365338:p.His122Arg	Somatic		WXS	Illumina GAIIx	Phase_IV	A2BDD6|A4FU31	Missense_Mutation	SNP	NULL	p.H122R	ENST00000376168.1	37	c.365	CCDS30596.1	1	.	.	.	.	.	.	.	.	.	.	.	0.011	-1.720544	0.00700	.	.	ENSG00000204502	ENST00000376168	T	0.14766	2.48	1.13	-2.26	0.06867	.	7.429810	0.00166	N	0.000002	T	0.07863	0.0197	N	0.17631	0.505	0.80722	P	0.0	.	.	.	.	.	.	T	0.15694	-1.0428	7	0.24483	T	0.36	.	2.6261	0.04930	0.516:0.2664:0.2175:0.0	.	.	.	.	R	122	ENSP00000365338:H122R	ENSP00000365338:H122R	H	+	2	0	PRAMEF5	13238508	0.000000	0.05858	0.000000	0.03702	0.037000	0.13140	-0.728000	0.04925	-1.339000	0.02230	-1.288000	0.01363	CAT	PRAMEF5	-	NULL	ENSG00000204502		0.488	PRAMEF5-001	KNOWN	basic|appris_principal|CCDS	protein_coding	PRAMEF5	HGNC	protein_coding	OTTHUMT00000026271.1	20	0.00	0	A	NM_001013407		13365921	13365921	+1	no_errors	ENST00000376168	ensembl	human	known	69_37n	missense	42	27.59	16	SNP	0.000	G
TAS2R14	50840	genome.wustl.edu	37	12	11230496	11230496	+	Intron	SNP	G	G	A	rs77642789		TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr12:11230496G>A	ENST00000381852.4	-	2	152				TAS2R64P_ENST00000534866.1_RNA|PRR4_ENST00000536668.1_Intron			Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14						detection of chemical stimulus involved in sensory perception of bitter taste (GO:0001580)|G-protein coupled receptor signaling pathway (GO:0007186)	integral component of membrane (GO:0016021)|plasma membrane (GO:0005886)	bitter taste receptor activity (GO:0033038)|taste receptor activity (GO:0008527)			central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(3)|upper_aerodigestive_tract(1)	8						AGAAAAATAAGGTTGGAGAAA	0.378																																						dbGAP											0																																										-	-	-	SO:0001627	intron_variant	0			AF227138	CCDS8637.1	12p13	2012-08-22			ENSG00000212127	ENSG00000212127		"""Taste receptors / Type 2"", ""GPCR / Unclassified : Taste receptors"""	14920	protein-coding gene	gene with protein product		604790				10761934, 10766242	Standard	NM_023922		Approved	T2R14, TRB1	uc010shi.2	Q9NYV8	OTTHUMG00000162720	ENST00000381852.4:c.1511-30709C>T	12.37:g.11230496G>A		Somatic		WXS	Illumina GAIIx	Phase_IV	Q645X3	RNA	SNP	-	NULL	ENST00000381852.4	37	NULL		12																																																																																			TAS2R64P	-	-	ENSG00000256274		0.378	TAS2R14-002	KNOWN	basic	processed_transcript	TAS2R64P	HGNC	protein_coding	OTTHUMT00000402305.1	38	0.00	0	G	NM_023922		11230496	11230496	-1	no_errors	ENST00000534866	ensembl	human	known	69_37n	rna	40	14.89	7	SNP	0.000	A
ZFHX4	79776	genome.wustl.edu	37	8	77618657	77618657	+	Silent	SNP	C	C	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none	1		Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	g.chr8:77618657C>T	ENST00000521891.2	+	2	2782	c.2334C>T	c.(2332-2334)gtC>gtT	p.V778V	ZFHX4_ENST00000050961.6_Silent_p.V778V|ZFHX4_ENST00000455469.2_Silent_p.V778V|ZFHX4_ENST00000517683.1_Intron|ZFHX4_ENST00000518282.1_Silent_p.V778V	NM_024721.4	NP_078997.4	Q86UP3	ZFHX4_HUMAN	zinc finger homeobox 4	778					regulation of transcription, DNA-templated (GO:0006355)|transcription, DNA-templated (GO:0006351)	nucleus (GO:0005634)	sequence-specific DNA binding (GO:0043565)|zinc ion binding (GO:0008270)			NS(3)|breast(11)|central_nervous_system(1)|endometrium(36)|haematopoietic_and_lymphoid_tissue(2)|kidney(15)|large_intestine(66)|liver(2)|lung(245)|ovary(11)|pancreas(3)|prostate(11)|skin(7)|upper_aerodigestive_tract(13)|urinary_tract(6)	432			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAACCAATGTCGCCAGGAACC	0.498										HNSCC(33;0.089)																												dbGAP											0													36.0	40.0	38.0					8																	77618657		2084	4252	6336	-	-	-	SO:0001819	synonymous_variant	0				CCDS47878.1, CCDS47878.2	8q21.11	2012-07-02	2007-07-16		ENSG00000091656	ENSG00000091656		"""Homeoboxes / ZF class"""	30939	protein-coding gene	gene with protein product		606940	"""zinc finger homeodomain 4"""			10873665, 11935336	Standard	NM_024721		Approved	ZFH4, FLJ20980	uc003yau.2	Q86UP3	OTTHUMG00000164557	ENST00000521891.2:c.2334C>T	8.37:g.77618657C>T		Somatic		WXS	Illumina GAIIx	Phase_IV	G3V138|Q18PS0|Q6ZN20	Silent	SNP	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	p.V778	ENST00000521891.2	37	c.2334	CCDS47878.2	8																																																																																			ZFHX4	-	smart_Znf_C2H2-like	ENSG00000091656		0.498	ZFHX4-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	ZFHX4	HGNC	protein_coding	OTTHUMT00000379197.2	31	0.00	0	C	NM_024721		77618657	77618657	+1	no_errors	ENST00000521891	ensembl	human	known	69_37n	silent	35	12.50	5	SNP	0.657	T
