Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
CCDC66	285331	hgsc.bcm.edu	37	3	56650051	56650052	+	In_Frame_Ins	INS	-	-	CTT	rs77152637	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	136	45	114	.	0.331	.	-|0.298;CTT|0.702	0.702	strong	.	CCDC66	145	.	NM_001141947	exon13	c.1813_1814insCTT	p.T605delinsTS	.	.	PASS	Pindel
PCDHGA12	26025	hgsc.bcm.edu	37	5	140812776	140812776	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	72	13	88	.	0.181	.	.	.	none	.	PCDHGA12	271	.	NM_032094	exon1	c.2449delC	p.L817fs	.	.	PASS	Pindel
ROBO2	6092	hgsc.bcm.edu	37	3	77147265	77147265	+	Silent	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	139	8	89	0	0.057554	0	.	.	none	.	ROBO2	527	.	NM_002942	exon2	c.G162A	p.A54A	CAAGGCGGAGGGC	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547090	132547090	+	Silent	SNP	A	A	G	rs7974276	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	46	2	78	1	0.0434783	0.0128205	A|0.794;G|0.206	0.206	strong	EP400,colon,carcinoma,0,3	EP400	370	3	NM_015409	exon47	c.A8178G	p.Q2726Q	GCAGCAACAACAG	.	scavenged	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154842243	154842243	+	Silent	SNP	A	A	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50	17	51	3	0.34	0.0588235	.	.	none	KCNN3,NS,carcinoma,0,3	KCNN3	141	3	NM_001204087	exon1	c.T198G	p.L66L	CTGCTGAAGCTGC	.	scavenged	Atlas-SNP
CBWD3	445571	hgsc.bcm.edu	37	9	70871836	70871836	+	Splice_Site	SNP	C	C	G	rs76283403		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	1232	14	1248	12	0.0113636	0.00961538	C|0.500;G|0.500	0.500	weak	CBWD3,rectum,carcinoma,-1,1	CBWD3	10	1	NM_201453	exon5	c.431-1C>G	.	TTTTCACGTGCAG	.	scavenged	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70924613	70924613	+	Nonsense_Mutation	SNP	C	C	T	rs138262361	bycluster;byfrequency	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	82	7	96	2	0.0853659	0.0208333	C|0.993;T|0.007	0.007	strong	ADAM21_ENST00000267499,NS,carcinoma,0,6	ADAM21	181	6	NM_003813	exon2	c.C397T	p.R133X	GGCTTTCGAGGAG	.	scavenged	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30955019	30955019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	106	14	95	2	0.132075	0.0210526	.	.	none	MUC21,NS,carcinoma,0,3	MUC21	98	3	NM_001010909	exon2	c.G1067A	p.G356E	CCAGTGGGGCCAG	.	scavenged	Atlas-SNP
ZNF837	116412	hgsc.bcm.edu	37	19	58879701	58879701	+	Silent	SNP	C	C	G	rs61746129	bycluster;byfrequency;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	4	4	0	0	1	.	C|0.818;G|0.182	0.182	strong	.	ZNF837	16	.	NM_138466	exon3	c.G999C	p.A333A	GCGCCGCGCCAGG	.	PASS	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	37	4	74005553	74005553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	77	3	114	0	0.038961	0	.	.	none	ANKRD17,NS,carcinoma,0,1	ANKRD17	214	1	NM_032217	exon15	c.C2780A	p.A927E	AACCGTGCATAGT	.	scavenged	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140573991	140573991	+	Silent	SNP	G	G	C	rs372116572		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	31	8	35	1	0.258065	0.0285714	.	.	weak	PCDHB10,colon,carcinoma,0,1	PCDHB10	177	1	NM_018930	exon1	c.G1866C	p.G622G	CAATGGGGAGGTG	.	scavenged	Atlas-SNP
PEX5L	51555	hgsc.bcm.edu	37	3	179525541	179525541	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	80	5	55	0	0.0625	0	.	.	none	.	PEX5L	104	.	NM_016559	exon14	c.C1597T	p.R533X	GTGCTCGCGTATA	.	PASS	Atlas-SNP
ZC3H12A	80149	hgsc.bcm.edu	37	1	37948367	37948367	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	36	7	58	0	0.194444	0	.	.	none	.	ZC3H12A	58	.	NM_025079	exon6	c.C955T	p.R319X	AAGTGCCGATTCT	.	PASS	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30954354	30954354	+	Silent	SNP	A	A	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	136	10	134	5	0.0735294	0.0373134	.	.	none	MUC21,NS,carcinoma,+1,1	MUC21	98	1	NM_001010909	exon2	c.A402T	p.T134T	CAGCACAGCCACC	.	scavenged	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	37	8	30706107	30706107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	111	7	103	0	0.0630631	0	.	.	none	TEX15,colon,carcinoma,+1,1	TEX15	350	1	NM_031271	exon1	c.G427T	p.V143F	TGGTAACTTTATT	.	PASS	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50	15	51	4	0.3	0.0784314	.	.	none	KCNN3,NS,carcinoma,+1,3	KCNN3	141	3	NM_001204087	exon1	c.T197A	p.L66H	TGCTGAAGCTGCG	.	scavenged	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152328051	152328051	+	Silent	SNP	T	T	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	104	8	131	4	0.0769231	0.0305344	.	.	none	FLG2,NS,carcinoma,-1,1	FLG2	431	1	NM_001014342	exon3	c.A2211G	p.S737S	TGAGCCTGATCCA	.	scavenged	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	154561188	154561188	+	Silent	SNP	C	C	T	rs56091483	bycluster;byfrequency;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	67	18	59	0	0.268657	0	C|0.910;T|0.090	0.090	strong	.	DPP6	383	.	NM_130797	exon9	c.C945T	p.Y315Y	CGCCTACGCCGCC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513411	195513411	+	Silent	SNP	A	A	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	491	9	403	5	0.0183299	0.0124069	.	.	none	MUC4_ENST00000463781,trunk,malignant_melanoma,-2,4	MUC4	1505	4	NM_018406	exon2	c.T5040A	p.P1680P	AGGAAGAGGGGTG	.	scavenged	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	37	13	43474489	43474489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	65	4	77	0	0.0615385	0	.	.	none	.	EPSTI1	47	.	NM_001002264	exon10	c.C805A	p.Q269K	GCTCTTGCTGCTG	.	PASS	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	37	1	203743519	203743519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	158	2	179	0	0.0126582	0	.	.	none	LAX1,NS,carcinoma,0,2	LAX1	48	2	NM_017773	exon5	c.A907T	p.S303C	GATCCCAGTGGAA	.	scavenged	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276562	203276562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50	10	66	0	0.2	0	.	.	none	.	BTG2	16	.	NM_006763	exon2	c.G473A	p.S158N	TCTCCAGCTAGGC	.	PASS	Atlas-SNP
CHSY3	337876	hgsc.bcm.edu	37	5	129240972	129240972	+	Silent	SNP	G	G	C	rs33917	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	9	4	1	0	0.444444	0	G|0.522;C|0.478	0.478	strong	.	CHSY3	92	.	NM_175856	exon1	c.G450C	p.P150P	CCGGCCGGGGAGT	.	PASS	Atlas-SNP
ASPH	444	hgsc.bcm.edu	37	8	62430094	62430094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	77	13	72	0	0.168831	0	.	.	none	.	ASPH	87	.	NM_004318	exon24	c.G2119A	p.E707K	TGGTCTCGTTGGC	.	PASS	Atlas-SNP
AAGAB	79719	hgsc.bcm.edu	37	15	67524188	67524188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	69	5	76	0	0.0724638	0	.	.	none	.	AAGAB	24	.	NM_024666	exon5	c.A499G	p.N167D	TGGCATTCAGGGC	.	PASS	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	37	14	92472110	92472110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	97	2	86	0	0.0206186	0	.	.	none	TRIP11,NS,carcinoma,0,1	TRIP11	184	1	NM_004239	exon11	c.A2210G	p.N737S	TACTTGTTTGCTT	.	scavenged	Atlas-SNP
FRG2B	441581	hgsc.bcm.edu	37	10	135440123	135440123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	212	10	246	3	0.0471698	0.0121951	.	.	none	FRG2B,NS,carcinoma,0,1	FRG2B	47	1	NM_001080998	exon1	c.G124A	p.E42K	CTTTTTCTTTGAA	.	scavenged	Atlas-SNP
POTED	317754	hgsc.bcm.edu	37	21	15011839	15011839	+	Silent	SNP	T	T	C	rs79514853		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	154	5	230	2	0.0324675	0.00869565	T|0.500;C|0.500	0.500	weak	POTED,NS,carcinoma,0,1	POTED	57	1	NM_174981	exon10	c.T1413C	p.D471D	TAGTGATGAACAA	.	scavenged	Atlas-SNP
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	8	4	2	0	0.5	0	C|0.615;G|0.385	0.385	strong	.	EME2	40	.	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	PASS	Atlas-SNP
TTK	7272	hgsc.bcm.edu	37	6	80751906	80751906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	268	5	333	1	0.0186567	0.003003	.	.	none	TTK_ENST00000369798,NS,carcinoma,+1,7	TTK	199	7	NM_003318	exon22	c.G2561A	p.R854K	AAAAAAGGGGAAA	.	scavenged	Atlas-SNP
TMEM108	66000	hgsc.bcm.edu	37	3	133099739	133099739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	58	11	51	0	0.189655	0	.	.	none	.	TMEM108	67	.	NM_023943	exon4	c.G1184A	p.S395N	CAGAAAGCACTAT	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	37	15	56208006	56208006	+	Missense_Mutation	SNP	G	G	A	rs370701101		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	64	13	71	0	0.203125	0	.	.	weak	.	NEDD4	167	.	NM_198400	exon1	c.C1024T	p.R342W	GCGGCCGTATGTC	.	PASS	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	37	7	94041934	94041934	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	47	8	41	0	0.170213	0	.	.	none	.	COL1A2	240	.	NM_000089	exon25	c.C1443T	p.G481G	AATTGGCCCAGCT	.	PASS	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	37	11	55655597	55655597	+	Silent	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	410	17	522	30	0.0414634	0.0574713	.	.	none	SPRYD5_ENST00000327733,NS,carcinoma,+2,2	.	.	2	NM_032681	exon4	c.A597G	p.E199E	CTTGGAAAGGCTG	.	scavenged	Atlas-SNP
OR4K1	79544	hgsc.bcm.edu	37	14	20403925	20403925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	182	3	186	1	0.0164835	0.00537634	.	.	none	OR4K1,right_upper_lobe,carcinoma,0,2	OR4K1	108	2	NM_001004063	exon1	c.G100T	p.V34F	TCTATAGTCTATG	.	scavenged	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2944669	2944669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	52	9	78	0	0.173077	0	.	.	none	CSMD1_ENST00000537824,NS,carcinoma,0,4	CSMD1	1469	4	NM_033225	exon49	c.G7424A	p.R2475Q	GGGTTTCGTCTAC	.	PASS	Atlas-SNP
CCDC144NL	339184	hgsc.bcm.edu	37	17	20768763	20768763	+	Missense_Mutation	SNP	T	T	C	rs201148033	bycluster	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	55	8	45	5	0.145455	0.111111	.	.	weak	CCDC144NL,colon,carcinoma,0,1	CCDC144NL	34	1	NM_001004306	exon4	c.A631G	p.K211E	TCCCCTTTCTTTT	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513476	195513476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	500	16	412	9	0.032	0.0218447	.	.	none	MUC4_ENST00000463781,NS,carcinoma,+2,5	MUC4	1505	5	NM_018406	exon2	c.A4975T	p.T1659S	GACCTGTGGATGC	.	scavenged	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152084216	152084216	+	Missense_Mutation	SNP	C	C	G	rs201131683	bycluster;byfrequency	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	19	2	33	2	0.105263	0.0606061	C|0.986;G|0.013	0.013	strong	TCHH,NS,lymphoid_neoplasm,0,1	TCHH	275	1	NM_007113	exon3	c.G1477C	p.E493Q	CCTCCTCCTCGAG	.	scavenged	Atlas-SNP
OR2T35	403244	hgsc.bcm.edu	37	1	248801912	248801912	+	Silent	SNP	C	C	G	rs1770044	byfrequency	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	89	2	113	1	0.0224719	0.00884956	C|0.500;G|0.500	0.500	strong	OR2T35,NS,carcinoma,0,2	OR2T35	19	2	NM_001001827	exon1	c.G648C	p.V216V	GTAGGACACAGAG	.	scavenged	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139606427	139606427	+	Missense_Mutation	SNP	A	A	G	rs72727814	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	117	11	155	0	0.0940171	0	A|0.995;T|0.005	.	alt	.	COL22A1	390	.	NM_152888	exon63	c.T4448C	p.L1483P	GCCAGGAGGTAGG	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	rs201206859		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	80	6	51	0	0.075	0	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	scavenged	Atlas-SNP
IER5	51278	hgsc.bcm.edu	37	1	181058618	181058618	+	Missense_Mutation	SNP	C	C	G	rs1416829	bycluster;by2hit2allele;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	6	6	0	0	1	.	C|0.566;G|0.434	0.434	strong	IER5,cerebellum,glioma,0,1	IER5	15	1	NM_016545	exon1	c.C580G	p.R194G	ACCCCCCGCGCTG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505859	195505859	+	Missense_Mutation	SNP	T	T	C	rs151339448	bycluster	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	104	33	88	17	0.317308	0.193182	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,3	MUC4	1505	3	NM_018406	exon2	c.A12592G	p.T4198A	AGGAAGTGTCGGT	.	scavenged	Atlas-SNP
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	16	10	5	1	0.625	0.2	A|0.308;G|0.692	0.692	strong	GLTSCR2,brain,glioma,0,4	GLTSCR2	45	4	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	scavenged	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	37	12	133389993	133389993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	43	7	35	0	0.162791	0	.	.	none	.	GOLGA3	234	.	NM_001172557	exon4	c.C419A	p.S140Y	AGGGGAGAATCTG	.	PASS	Atlas-SNP
IFT122	55764	hgsc.bcm.edu	37	3	129207102	129207102	+	Silent	SNP	C	C	T	rs146874343	bycluster;byfrequency	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	316	12	282	3	0.0379747	0.0106383	C|0.987;T|0.013	0.013	strong	IFT122,NS,carcinoma,+1,1	IFT122	117	1	NM_052985	exon17	c.C2007T	p.S669S	GCAGTCCGCTCCC	.	scavenged	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	37	14	69951714	69951714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	74	13	111	0	0.175676	0	.	.	none	.	PLEKHD1	24	.	NM_001161498	exon1	c.C32G	p.P11R	TGTCGCCCTCGCC	.	PASS	Atlas-SNP
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	13	13	0	0	1	.	A|0.234;G|0.766	0.766	strong	.	FPGS	30	.	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	PASS	Atlas-SNP
GDA	9615	hgsc.bcm.edu	37	9	74838127	74838127	+	Missense_Mutation	SNP	G	G	A	rs142139311		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	96	5	100	0	0.0520833	0	G|1.000;A|0.000	0.000	weak	.	GDA	113	.	NM_004293	exon7	c.G698A	p.R233H	AAACCCGTGATTT	.	PASS	Atlas-SNP
PCYOX1L	78991	hgsc.bcm.edu	37	5	148742308	148742308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	44	14	58	0	0.318182	0	.	.	none	.	PCYOX1L	32	.	NM_024028	exon2	c.G197T	p.R66L	GTGGCCGCTTGGC	.	PASS	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	37	4	5630349	5630349	+	Missense_Mutation	SNP	C	C	T	rs145693546	bycluster;byfrequency;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	51	10	68	0	0.196078	0	C|0.998;T|0.002	0.002	strong	EVC2,NS,carcinoma,0,2	EVC2	202	2	NM_147127	exon12	c.G1823A	p.R608H	TGCACACGGGTCT	.	PASS	Atlas-SNP
DRD5	1816	hgsc.bcm.edu	37	4	9784882	9784882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	88	4	149	0	0.0454545	0	.	.	none	DRD5,NS,carcinoma,0,1	DRD5	119	1	NM_000798	exon1	c.A1229G	p.Y410C	CTGCCTACATCCA	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508478	195508478	+	Missense_Mutation	SNP	G	G	C	rs76305071	bycluster;byfrequency	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	68	6	56	4	0.0882353	0.0714286	G|0.990;C|0.010	0.010	strong	MUC4_ENST00000463781,NS,carcinoma,+2,3	MUC4	1505	3	NM_018406	exon2	c.C9973G	p.H3325D	TGGCGTGACCTGT	.	scavenged	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	37	19	44892266	44892266	+	Splice_Site	SNP	T	T	C	rs200167944		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84	4	108	2	0.047619	0.0185185	.	.	weak	ZNF285,colon,carcinoma,0,1	ZNF285	86	1	NM_152354	exon5	c.143-2A>G	.	GTCTCCTAGGAGA	.	scavenged	Atlas-SNP
AGGF1	55109	hgsc.bcm.edu	37	5	76332530	76332530	+	Silent	SNP	T	T	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	110	3	150	2	0.0272727	0.0133333	.	.	none	AGGF1,NS,carcinoma,+2,1	AGGF1	71	1	NM_018046	exon4	c.T666G	p.G222G	CACTGGTTTCTAT	.	scavenged	Atlas-SNP
TUBA3C	7278	hgsc.bcm.edu	37	13	19751301	19751301	+	Silent	SNP	C	C	T	rs140548354		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	112	6	127	5	0.0535714	0.0393701	C|0.999;T|0.001	0.001	weak	TUBA3C,bladder,carcinoma,-2,1	TUBA3C	166	1	NM_006001	exon4	c.G822A	p.P274P	GATGACCGGGGCG	.	scavenged	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113657379	113657379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	66	14	90	0	0.212121	0	.	.	none	CSMD3_ENST00000343508,NS,carcinoma,0,5	CSMD3	2325	5	NM_198123	exon20	c.C3269T	p.S1090F	TTCAGAGAATTTG	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507874	195507874	+	Missense_Mutation	SNP	G	G	T	rs199875073	bycluster	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	303	10	247	7	0.0330033	0.0283401	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C10577A	p.T3526N	GAGGAAGTGTCGG	.	scavenged	Atlas-SNP
RNF128	79589	hgsc.bcm.edu	37	X	105970554	105970554	+	Missense_Mutation	SNP	G	G	C	rs148223909		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	176	50	197	0	0.284091	0	G|1.000;C|0.000	0.000	weak	.	RNF128	74	.	NM_194463	exon1	c.G411C	p.E137D	TTATGAGAGAGGG	.	PASS	Atlas-SNP
BTG1	694	hgsc.bcm.edu	37	12	92539200	92539200	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	85	12	123	1	0.141176	0.00813008	.	.	none	BTG1,NS,lymphoid_neoplasm,0,1	BTG1	30	1	NM_001731	exon1	c.C112T	p.Q38X	AGGTCTGCAGCTG	.	scavenged	Atlas-SNP
POM121	9883	hgsc.bcm.edu	37	7	72413896	72413896	+	Missense_Mutation	SNP	A	A	G	rs71554689		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	354	8	346	5	0.0225989	0.0144509	A|0.500;G|0.500	0.500	weak	POM121_ENST00000395270,NS,carcinoma,0,8	POM121	131	8	NM_172020	exon11	c.A2569G	p.T857A	TCCAGCACCACCA	.	scavenged	Atlas-SNP
GDF3	9573	hgsc.bcm.edu	37	12	7848214	7848214	+	Silent	SNP	C	C	T	rs376751766		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	82	13	119	0	0.158537	0	.	.	weak	.	GDF3	68	.	NM_020634	exon1	c.G111A	p.K37K	AGGCGCCTTATCT	.	PASS	Atlas-SNP
STK11	6794	hgsc.bcm.edu	37	19	1220490	1220490	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	68	10	66	0	0.147059	0	.	.	none	STK11,NS,carcinoma,0,1	STK11	410	1	NM_000455	exon4	c.C583T	p.L195L	TCCGACCTGGGCG	.	PASS	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	37	13	42877901	42877901	+	Silent	SNP	C	C	T	rs201525107	by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	96	24	110	0	0.25	0	C|1.000;T|0.000	0.000	strong	.	AKAP11	146	.	NM_016248	exon8	c.C5019T	p.A1673A	GGCAGCCGACAGT	.	PASS	Atlas-SNP
SMARCAD1	56916	hgsc.bcm.edu	37	4	95199798	95199798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	288	3	323	1	0.0104167	0.00309598	.	.	none	SMARCAD1,NS,malignant_melanoma,+1,3	SMARCAD1	97	3	NM_001128429	exon18	c.G2210T	p.R737L	AAGATCGAATTGA	.	scavenged	Atlas-SNP
CD79B	974	hgsc.bcm.edu	37	17	62006798	62006798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50	21	71	0	0.42	0	.	.	none	CD79B,NS,lymphoid_neoplasm,-1,13	CD79B	38	13	NM_001039933	exon5	c.A590T	p.Y197F	ACCTCGTAGGTGT	.	PASS	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	37	20	62038381	62038381	+	Silent	SNP	C	C	T	rs139587368	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	15	10	1	0	0.666667	0	C|0.975;T|0.025	0.025	strong	.	KCNQ2	201	.	NM_172107	exon17	c.G2235A	p.P745P	GGCAGGCGGCGGC	.	PASS	Atlas-SNP
DHRS4	10901	hgsc.bcm.edu	37	14	24424420	24424420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	116	6	124	8	0.0517241	0.0645161	.	.	none	DHRS4,NS,carcinoma,0,5	DHRS4	22	5	NM_021004	exon2	c.C305T	p.T102M	TGGCCACGGTGAG	.	scavenged	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	37	5	140554142	140554142	+	Missense_Mutation	SNP	T	T	G	rs13174866	bycluster;by2hit2allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	55	6	41	1	0.109091	0.0243902	T|1.000;|0.000	.	weak	PCDHB7,NS,carcinoma,0,1	PCDHB7	231	1	NM_018940	exon1	c.T1726G	p.L576V	GAGCCGTTGCCCC	.	scavenged	Atlas-SNP
HAGHL	84264	hgsc.bcm.edu	37	16	778158	778158	+	Silent	SNP	C	C	G	rs1406815	bycluster;by2hit2allele;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	6	6	0	0	1	.	C|0.556;G|0.444	0.444	strong	.	HAGHL	18	.	NM_032304	exon3	c.C213G	p.P71P	TCGTCCCGGGCTG	.	PASS	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	37	7	101892121	101892121	+	Silent	SNP	G	G	A	rs410825	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	5	5	0	0	1	.	G|0.460;A|0.540	0.540	strong	.	CUX1	253	.	NM_001202543	exon24	c.G4350A	p.P1450P	CGCGCCGCCGCCC	.	PASS	Atlas-SNP
GALNT11	63917	hgsc.bcm.edu	37	7	151818642	151818642	+	Silent	SNP	G	G	T	rs201978640	alternate_allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	189	3	162	0	0.015873	0	G|0.999;A|0.001	.	alt	GALNT11,colon,carcinoma,+1,1	GALNT11	59	1	NM_022087	exon12	c.G1707T	p.R569R	CAATCGGCTATAC	.	scavenged	Atlas-SNP
HSD17B7	51478	hgsc.bcm.edu	37	1	162769603	162769603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	371	6	444	3	0.0161725	0.00675676	.	.	none	HSD17B7,NS,carcinoma,0,5	HSD17B7	25	5	NM_016371	exon5	c.G518A	p.S173N	CTCGCAGTGCAAG	.	scavenged	Atlas-SNP
TPPP	11076	hgsc.bcm.edu	37	5	678087	678087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	186	5	281	7	0.0268817	0.024911	.	.	none	TPPP,NS,carcinoma,0,1	TPPP	24	1	NM_007030	exon2	c.G89A	p.R30K	GACAGCCTCTTGG	.	scavenged	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	43	8	83	0	0.186047	0	.	.	weak	.	SALL1	301	.	NM_002968	exon2	c.G478A	p.G160S	CGCCGCCGCTGCT	.	PASS	Atlas-SNP
CCDC81	60494	hgsc.bcm.edu	37	11	86131001	86131001	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	74	16	72	0	0.216216	0	.	.	none	.	CCDC81	89	.	NM_001156474	exon14	c.C1723T	p.R575X	CTGGAGCGAGTAA	.	PASS	Atlas-SNP
NBPF14	25832	hgsc.bcm.edu	37	1	148004784	148004784	+	Missense_Mutation	SNP	T	T	C	rs144889269	bycluster;byfrequency;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	270	17	363	10	0.062963	0.0275482	T|0.944;C|0.056	0.056	strong	NBPF14,NS,adenoma,+1,2	NBPF14	107	2	NM_015383	exon22	c.A2530G	p.S844G	GCATGCTGTTGAG	.	scavenged	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371097	240371097	+	Silent	SNP	G	G	A	rs71646827	bycluster;byfrequency;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	66	9	95	4	0.136364	0.0421053	G|0.939;A|0.061	0.061	strong	FMN2,NS,carcinoma,0,1	FMN2	451	1	NM_020066	exon5	c.G2985A	p.A995A	CGGAGCGGGCATA	.	scavenged	Atlas-SNP
SLC16A1	6566	hgsc.bcm.edu	37	1	113460019	113460019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	113	30	162	0	0.265487	0	.	.	none	.	SLC16A1	61	.	NM_001166496	exon4	c.G1009A	p.V337I	CAACAACGGAAGC	.	PASS	Atlas-SNP
NR0B1	190	hgsc.bcm.edu	37	X	30327153	30327153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	141	10	134	0	0.070922	0	.	.	none	.	NR0B1	61	.	NM_000475	exon1	c.G328A	p.G110S	CAGAGCCGCACGA	.	PASS	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3184180	3184180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	51	16	88	0	0.313726	0	.	.	none	.	HTT	221	.	NM_002111	exon37	c.A4849G	p.M1617V	CTCCCAATGTTAG	.	PASS	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	37	X	153039489	153039489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50	10	58	0	0.2	0	.	.	none	.	PLXNB3	208	.	NM_001163257	exon21	c.C3524T	p.P1175L	TGGCACCCCTCAG	.	PASS	Atlas-SNP
NOTUM	147111	hgsc.bcm.edu	37	17	79912130	79912130	+	Splice_Site	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84	5	93	0	0.0595238	0	.	.	none	.	NOTUM	50	.	NM_178493	exon11	c.1184+2T>C	.	ACACTGACCTCCG	.	PASS	Atlas-SNP
FAM153B	202134	hgsc.bcm.edu	37	5	175528584	175528584	+	Missense_Mutation	SNP	C	C	T	rs2014864	bycluster;byfrequency;bysubmitter;by2hit2allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	453	18	552	8	0.0397351	0.0144928	C|0.500;T|0.500	0.500	strong	FAM153B,NS,carcinoma,0,1	FAM153B	28	1	NM_001265615	exon11	c.C433T	p.L145F	GCCGAACGTACGT	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1016693	1016693	+	Silent	SNP	G	G	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	337	11	461	4	0.0326409	0.00867679	.	.	none	MUC6_ENST00000421673,NS,carcinoma,-1,2	MUC6	408	2	NM_005961	exon31	c.C6108G	p.A2036A	GATGGAGGCAGAA	.	scavenged	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	37	12	108956417	108956417	+	Missense_Mutation	SNP	T	T	G	rs67681514	alternate_allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	6	6	0	0	1	.	GG|0.500;TT|0.500	.	alt	.	ISCU	19	.	NM_213595	exon1	c.T19G	p.F7V	GGGGCTTTCCGTC	.	PASS	Atlas-SNP
USP4	7375	hgsc.bcm.edu	37	3	49362425	49362425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	102	10	87	0	0.0980392	0	.	.	none	USP4,mouth,carcinoma,+1,1	USP4	72	1	NM_199443	exon5	c.C535G	p.R179G	TTTCACGCTCCGC	.	PASS	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	37	2	85571180	85571180	+	Missense_Mutation	SNP	G	G	A	rs149307146	bycluster	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	82	4	131	2	0.0487805	0.0152672	G|1.000;A|0.000	0.000	weak	RETSAT,NS,carcinoma,0,1	RETSAT	56	1	NM_017750	exon9	c.C1475T	p.S492F	ACAAAGGAGTTTT	.	scavenged	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	37	1	26655287	26655287	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	47	12	61	0	0.255319	0	.	.	none	.	AIM1L	98	.	NM_001039775	exon16	c.G4392A	p.V1464V	GCTCCGCACCTCC	.	PASS	Atlas-SNP
RNF10	9921	hgsc.bcm.edu	37	12	121014414	121014414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	77	14	113	0	0.181818	0	.	.	none	.	RNF10	75	.	NM_014868	exon17	c.G2381C	p.R794T	AGAAAAGAAAAAA	.	PASS	Atlas-SNP
FBP2	8789	hgsc.bcm.edu	37	9	97321395	97321395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	62	6	62	0	0.0967742	0	.	.	none	.	FBP2	26	.	NM_003837	exon7	c.G845A	p.C282Y	GGATTGCATTCAT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195510341	195510341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	71	22	63	13	0.309859	0.206349	.	.	none	MUC4_ENST00000463781,NS,lymphoid_neoplasm,0,1	MUC4	1505	1	NM_018406	exon2	c.T8110C	p.S2704P	GAAGAGAGGTGGT	.	scavenged	Atlas-SNP
DCT	1638	hgsc.bcm.edu	37	13	95092324	95092324	+	Missense_Mutation	SNP	A	A	G	rs138244474		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	92	12	121	1	0.130435	0.00826446	A|1.000;G|0.000	0.000	weak	DCT_ENST00000446125,colon,carcinoma,0,2	DCT	186	2	NM_001129889	exon10	c.T1487C	p.V496A	TCTTCAACTGAAA	.	scavenged	Atlas-SNP
ZNF503	84858	hgsc.bcm.edu	37	10	77158962	77158962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	21	10	21	0	0.47619	0	.	.	none	.	ZNF503	25	.	NM_032772	exon2	c.G1486A	p.A496T	GGCCGGCCAGGGA	.	PASS	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	37	19	1434903	1434903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	47	19	49	0	0.404255	0	.	.	none	.	DAZAP1	52	.	NM_018959	exon12	c.C1216T	p.R406X	CCCTACCGACGCT	.	PASS	Atlas-SNP
SPAG16	79582	hgsc.bcm.edu	37	2	214239770	214239770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	382	15	410	1	0.039267	0.00243902	.	.	none	SPAG16_ENST00000272898,NS,carcinoma,+1,2	SPAG16	134	2	NM_024532	exon9	c.G869T	p.G290V	CAGAAGGTCCTAC	.	scavenged	Atlas-SNP
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	4	4	1	1	1	1	A|0.006;C|0.994	0.994	strong	WDR34,cerebellum,glioma,0,1	WDR34	29	1	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195510030	195510030	+	Silent	SNP	C	C	G	rs374297426		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	173	16	96	5	0.0924855	0.0520833	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.G8421C	p.S2807S	CACTGACGAAGCG	.	scavenged	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	37	12	52885485	52885485	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	78	5	105	1	0.0641026	0.00952381	.	.	none	KRT6A,NS,haematopoietic_neoplasm,0,1	KRT6A	89	1	NM_005554	exon2	c.A576C	p.E192D	CTTTGTTTCCAGA	.	scavenged	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43268286	43268286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	155	18	194	0	0.116129	0	.	.	none	.	PSG8	101	.	NM_001130167	exon2	c.A212G	p.Q71R	CTGATTTGCCCTT	.	PASS	Atlas-SNP
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	7	4	0	0	0.571429	.	G|0.301;C|0.699	0.699	strong	TPO,cerebellum,glioma,0,1	TPO	224	1	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	PASS	Atlas-SNP
TNF	7124	hgsc.bcm.edu	37	6	31543608	31543608	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	40	14	54	0	0.35	0	.	.	none	.	TNF	15	.	NM_000594	exon1	c.C90T	p.C30C	GCGGTGCTTGTTC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505842	195505842	+	Silent	SNP	T	T	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	110	29	95	16	0.263636	0.168421	.	.	none	MUC4_ENST00000463781,NS,carcinoma,-2,1	MUC4	1505	1	NM_018406	exon2	c.A12609C	p.T4203T	GTGACCTGTGGAT	.	scavenged	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	37	11	101375357	101375357	+	Missense_Mutation	SNP	G	G	A	rs199884871	bycluster	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	72	6	93	0	0.0833333	0	.	.	weak	TRPC6,NS,carcinoma,+1,1	TRPC6	132	1	NM_004621	exon2	c.C343T	p.R115W	TCTTCCGCACCAC	.	PASS	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	37	20	62038378	62038378	+	Silent	SNP	A	A	T	rs1801471	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	15	5	1	1	0.333333	1	A|0.929;T|0.071	0.071	strong	KCNQ2,NS,carcinoma,0,1	KCNQ2	201	1	NM_172107	exon17	c.T2238A	p.P746P	GTGGGCAGGCGGC	.	scavenged	Atlas-SNP
PRR18	285800	hgsc.bcm.edu	37	6	166721424	166721424	+	Silent	SNP	C	C	T	rs13205770	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	5	5	0	0	1	.	C|0.517;T|0.483	0.483	strong	.	PRR18	4	.	NM_175922	exon1	c.G207A	p.P69P	GGCCGGCGGCTGC	.	PASS	Atlas-SNP
PABPC3	5042	hgsc.bcm.edu	37	13	25671795	25671795	+	Missense_Mutation	SNP	C	C	T	rs113416318	bycluster;byfrequency	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	69	7	51	2	0.101449	0.0392157	C|0.988;T|0.012	0.012	strong	PABPC3,rectum,carcinoma,0,1	PABPC3	129	1	NM_030979	exon1	c.C1459T	p.R487C	GGTCCACGTCCTG	.	scavenged	Atlas-SNP
MRPS7	51081	hgsc.bcm.edu	37	17	73261814	73261814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	59	2	79	0	0.0338983	0	.	.	none	MRPS7,colon,carcinoma,0,1	MRPS7	19	1	NM_015971	exon5	c.G539A	p.R180H	GTCGCCGCTTCCT	.	scavenged	Atlas-SNP
ANAPC1	64682	hgsc.bcm.edu	37	2	112608394	112608394	+	Missense_Mutation	SNP	T	T	C	rs12466309	bycluster;byfrequency;byhapmap	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	422	5	560	5	0.0118483	0.00892857	T|0.500;C|0.500	0.500	strong	ANAPC1,NS,carcinoma,0,9	ANAPC1	116	9	NM_022662	exon14	c.A1609G	p.T537A	TTGGAGTACTAAC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	109	6	81	2	0.0550459	0.0246914	.	.	none	MUC4_ENST00000463781,bladder,carcinoma,0,4	MUC4	1505	4	NM_018406	exon2	c.G12679C	p.V4227L	TGGTGACAGGAAG	.	scavenged	Atlas-SNP
ARIH2	10425	hgsc.bcm.edu	37	3	49017001	49017001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84	14	74	1	0.166667	0.0135135	.	.	none	ARIH2,NS,carcinoma,0,1	ARIH2	32	1	NM_006321	exon12	c.G1048A	p.V350M	GACATCGTGAACC	.	scavenged	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385714	58385714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	203	4	232	2	0.0197044	0.00862069	.	.	none	ZNF814,NS,carcinoma,0,2	ZNF814	93	2	NM_001144989	exon3	c.A1044C	p.E348D	TTTTTTTTCAGTG	.	scavenged	Atlas-SNP
DRD5	1816	hgsc.bcm.edu	37	4	9784853	9784853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	85	4	125	0	0.0470588	0	.	.	none	DRD5,NS,carcinoma,0,2	DRD5	119	2	NM_000798	exon1	c.C1200G	p.I400M	AGACATCGTCTTC	.	scavenged	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	37	10	21309077	21309077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	113	8	96	0	0.0707965	0	.	.	none	NEBL_ENST00000417816,NS,malignant_melanoma,-1,2	NEBL	199	2	NM_001173484	exon3	c.G218A	p.R73H	TTCAGGCGAAGAT	.	PASS	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	37	14	69951715	69951715	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	73	12	111	0	0.164384	0	.	.	none	.	PLEKHD1	24	.	NM_001161498	exon1	c.C33T	p.P11P	GTCGCCCTCGCCG	.	PASS	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	rs200244531		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	615	10	605	4	0.0162602	0.00661157	.	.	weak	TPTE2_ENST00000400230,NS,carcinoma,0,1	TPTE2	225	1	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	scavenged	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	37	13	114783725	114783725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84	18	132	0	0.214286	0	.	.	none	.	RASA3	83	.	NM_007368	exon11	c.G946A	p.V316M	CTGACACGGGCTG	.	PASS	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	20	13	5	0	0.65	0	A|0.540;G|0.460	0.460	strong	ANKRD24_ENST00000318934,NS,carcinoma,0,2	ANKRD24	180	2	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	scavenged	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	37	8	144810138	144810138	+	Missense_Mutation	SNP	G	G	A	rs1137806	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	11	4	0	0	0.363636	.	G|0.853;A|0.147	0.147	strong	.	FAM83H	68	.	NM_198488	exon5	c.C1493T	p.P498L	AGCTCCGGGAAGC	.	PASS	Atlas-SNP
RASSF1	11186	hgsc.bcm.edu	37	3	50378176	50378176	+	Missense_Mutation	SNP	T	T	G	rs4688725	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	10	7	4	0	0.7	0	T|0.731;G|0.269	0.269	strong	.	RASSF1	46	.	NM_007182	exon1	c.A61C	p.K21Q	GGCCCTTCCCAGC	.	PASS	Atlas-SNP
SYTL5	94122	hgsc.bcm.edu	37	X	37965974	37965974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	194	33	178	0	0.170103	0	.	.	none	.	SYTL5	72	.	NM_001163334	exon11	c.G1350T	p.K450N	TGTCAAGAATTGC	.	PASS	Atlas-SNP
