Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
MLL2	8085	hgsc.bcm.edu	37	12	49441815	49441816	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	55	17	67	.	0.309	.	.	.	none	.	MLL2	1173	.	NM_003482	exon14	c.4169_4170insG	p.A1390fs	.	.	PASS	Pindel,Atlas-Indel
KCNA6	3742	hgsc.bcm.edu	37	12	4919954	4919957	+	Frame_Shift_Del	DEL	CTCA	CTCA	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CTCA	CTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	121	36	149	.	0.298	.	.	.	none	.	KCNA6	122	.	NM_002235	exon1	c.746_749del	p.249_250del	.	.	PASS	Pindel,Atlas-Indel
MCM3AP	8888	hgsc.bcm.edu	37	21	47704722	47704723	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39	15	49	.	0.385	.	.	.	none	.	MCM3AP	146	.	NM_003906	exon1	c.479_480insG	p.A160fs	.	.	PASS	Pindel,Atlas-Indel
TTN	7273	hgsc.bcm.edu	37	2	179428230	179428233	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	TCTG	TCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108	31	157	.	0.287	.	.	.	none	.	TTN	18412	.	NM_001267550	exon326	c.82627_82630del	p.27543_27544del	.	.	PASS	Pindel,Atlas-Indel
ASXL1	171023	hgsc.bcm.edu	37	20	31023636	31023636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	136	32	121	.	0.235	.	.	.	none	.	ASXL1	1114	.	NM_015338	exon12	c.3120delT	p.S1040fs	.	.	PASS	Pindel,Atlas-Indel
CACNA1B	774	hgsc.bcm.edu	37	9	140918171	140918185	+	In_Frame_Del	DEL	GGAGAAGGAGACCAC	GGAGAAGGAGACCAC	-	rs145816559	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	GGAGAAGGAGACCAC	GGAGAAGGAGACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	53	14	64	0	0.264151	0	GGAGAAGGAGACCAC|0.621;-|0.379	0.379	strong	.	CACNA1B	266	.	NM_001243812	exon19	c.2975_2989del	p.992_997del	.	.	PASS	Atlas-Indel
RAI1	10743	hgsc.bcm.edu	37	17	17699094	17699095	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	126	41	125	.	0.325	.	.	.	none	.	RAI1	121	.	NM_030665	exon3	c.2831_2832del	p.944_944del	.	.	PASS	Pindel,Atlas-Indel
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124573	26124585	+	Frame_Shift_Del	DEL	GCAACTACGCAGA	GCAACTACGCAGA	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	GCAACTACGCAGA	GCAACTACGCAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196	35	168	0	0.178571	0	.	.	none	.	HIST1H2AC	29	.	NM_003512	exon1	c.112_124del	p.38_42del	.	.	PASS	Atlas-Indel
JAKMIP3	282973	hgsc.bcm.edu	37	10	133954074	133954151	+	Frame_Shift_Del	DEL	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	44	26	34	.	0.591	.	.	.	none	.	JAKMIP3	69	.	NM_001105521	exon9	c.1463_1473del	p.488_491del	.	.	PASS	Pindel
RIC8A	60626	hgsc.bcm.edu	37	11	209895	209897	+	In_Frame_Del	DEL	CCC	CCC	-	rs3832797	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	27	15	14	.	0.556	.	CCC|0.579;-|0.421	0.421	strong	.	RIC8A	45	.	NM_021932	exon3	c.620_622del	p.207_208del	.	.	PASS	Pindel
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020656	46020670	+	Frame_Shift_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	rs36208679	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	35	15	56	.	0.429	.	.	.	weak	.	KRTAP10-7	41	.	NM_198689	exon1	c.134_134del	p.45_45del	.	.	PASS	Pindel
ZNF384	171017	hgsc.bcm.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	rs3835029	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	36	12	36	.	0.333	.	.	.	strong	ZNF384_ENST00000361959,caecum,carcinoma,0,4	ZNF384	102	4	NM_001135734	exon11	c.1543_1545del	p.515_515del	.	.	PASS	Pindel
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058183	79058184	+	Frame_Shift_Ins	INS	-	-	TGGGTCC	rs71145890		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	82	17	62	.	0.207	.	TGGGTCC|1.000;|0.000	1.000	weak	.	ADAMTS7	142	.	NM_014272	exon19	c.4070_4071insGGACCCA	p.K1357fs	.	.	PASS	Pindel
DENND2A	27147	hgsc.bcm.edu	37	7	140246733	140246733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	182	3	131	0	0.0164835	0	.	.	none	DENND2A,colon,carcinoma,+2,1	DENND2A	132	1	NM_015689	exon11	c.G2044A	p.D682N	CCTCATCCAAGAT	.	scavenged	Atlas-SNP
PAX5	5079	hgsc.bcm.edu	37	9	36923482	36923482	+	Splice_Site	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	29	15	27	0	0.517241	0	.	.	none	.	PAX5	250	.	NM_016734	exon8	c.781-1G>A	.	TGTGGTCTGAAAG	.	PASS	Atlas-SNP
CCT6A	908	hgsc.bcm.edu	37	7	56129454	56129454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	295	66	303	0	0.223729	0	.	.	none	.	CCT6A	44	.	NM_001762	exon12	c.C1362G	p.N454K	TCAGAACTCTGGT	.	PASS	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	37	19	54756239	54756239	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	180	2	150	0	0.0111111	0	.	.	none	LILRB5_ENST00000450632,NS,carcinoma,0,2	LILRB5	176	2	NM_001081442	exon11	c.G1566A	p.E522E	AATTTCCTCCTGG	.	scavenged	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78667095	78667095	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	192	55	178	1	0.286458	0.00561798	.	.	none	ROBO1_ENST00000495273,NS,carcinoma,-1,4	ROBO1	833	4	NM_002941	exon27	c.G3972A	p.T1324T	CGCATCCGTATCC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515304	195515304	+	Silent	SNP	T	T	A	rs202019266		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	116	3	91	0	0.0258621	0	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.A3147T	p.A1049A	TGTGGATGCTGAG	.	scavenged	Atlas-SNP
GGT1	2678	hgsc.bcm.edu	37	22	25016911	25016911	+	Missense_Mutation	SNP	C	C	T	rs199703506	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	486	15	541	16	0.0308642	0.0295749	C|0.996;T|0.004	0.004	strong	GGT1,NS,carcinoma,0,1	GGT1	68	1	NM_013430	exon9	c.C607T	p.R203W	GTGCTTCGGGAGG	.	scavenged	Atlas-SNP
GPC2	221914	hgsc.bcm.edu	37	7	99774749	99774749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	246	3	140	1	0.0121951	0.00714286	.	.	none	GPC2,NS,carcinoma,-1,1	GPC2	49	1	NM_152742	exon1	c.A74G	p.E25G	TTTGCCTCGCTCC	.	scavenged	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49415922	49415922	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	47	16	76	0	0.340426	0	.	.	none	.	MLL2	1173	.	NM_003482	exon53	c.T16425A	p.H5475Q	ACAGGAATGGTTA	.	PASS	Atlas-SNP
BCR	613	hgsc.bcm.edu	37	22	23654017	23654017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	284	7	281	6	0.0246479	0.0213523	.	.	none	BCR,NS,carcinoma,0,1	BCR	74	1	NM_004327	exon19	c.G3316A	p.D1106N	GCCTTCGACGTCA	.	scavenged	Atlas-SNP
NIT2	56954	hgsc.bcm.edu	37	3	100065064	100065064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	227	3	207	0	0.0132159	0	.	.	none	NIT2,NS,carcinoma,0,1	NIT2	35	1	NM_020202	exon6	c.G470A	p.R157Q	ACATGCGGTTTGC	.	scavenged	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	37	X	112033851	112033851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	191	116	424	0	0.60733	0	.	.	none	.	AMOT	204	.	NM_001113490	exon7	c.C2086G	p.L696V	CATCCAGAGCAAA	.	PASS	Atlas-SNP
CNOT3	4849	hgsc.bcm.edu	37	19	54646891	54646891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	65	23	75	0	0.353846	0	.	.	none	.	CNOT3	133	.	NM_014516	exon3	c.G62T	p.G21V	CCGAGGGCGTGGA	.	PASS	Atlas-SNP
ADCY5	111	hgsc.bcm.edu	37	3	123167249	123167249	+	Silent	SNP	G	G	A	rs4678027	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	4	4	0	0	1	.	G|0.027;A|0.973	0.973	strong	.	ADCY5	169	.	NM_183357	exon1	c.C144T	p.G48G	GGCAGAGCCCCCG	.	PASS	Atlas-SNP
PROX1	5629	hgsc.bcm.edu	37	1	214178516	214178516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	98	31	122	0	0.316327	0	.	.	none	.	PROX1	124	.	NM_001270616	exon3	c.A1734C	p.E578D	GCAGGAAGGATTG	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190876268	190876268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	250	4	362	0	0.016	0	.	.	none	FRG1,trunk,malignant_melanoma,-1,1	FRG1	76	1	NM_004477	exon5	c.A394G	p.I132V	GATGCAATTGGAC	.	scavenged	Atlas-SNP
SLAMF6	114836	hgsc.bcm.edu	37	1	160461146	160461146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95	36	84	0	0.378947	0	.	.	none	.	SLAMF6	46	.	NM_052931	exon3	c.A415G	p.S139G	GCTGACTGTGATT	.	PASS	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	37	1	150443782	150443782	+	Silent	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	158	2	152	0	0.0126582	0	.	.	none	RPRD2_ENST00000369068,NS,carcinoma,+2,2	RPRD2	189	2	NM_015203	exon11	c.A2358T	p.V786V	TTCTGTATCTACA	.	scavenged	Atlas-SNP
PLCXD3	345557	hgsc.bcm.edu	37	5	41381956	41381956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	144	54	208	0	0.375	0	.	.	none	.	PLCXD3	86	.	NM_001005473	exon2	c.A784C	p.S262R	GGCCACTTGCCAC	.	PASS	Atlas-SNP
ZNF443	10224	hgsc.bcm.edu	37	19	12542646	12542646	+	Missense_Mutation	SNP	C	C	T	rs199587788	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	200	90	244	0	0.45	0	.	.	alt	ZNF443,caecum,carcinoma,0,1	ZNF443	63	1	NM_005815	exon4	c.G340A	p.G114S	AATGACCCATGAC	.	PASS	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	37	2	234580967	234580967	+	Silent	SNP	A	A	G	rs76359435	bycluster;alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	117	9	119	2	0.0769231	0.0168067	.	.	alt	UGT1A9,colon,carcinoma,0,1	UGT1A9	79	1	NM_021027	exon1	c.A387G	p.K129K	GTTTAAAGACAAA	.	scavenged	Atlas-SNP
OR5H15	403274	hgsc.bcm.edu	37	3	97888302	97888302	+	Silent	SNP	C	C	A	rs115424559	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	285	14	201	0	0.0491228	0	C|0.981;A|0.019	0.019	strong	OR5H15,rectum,carcinoma,0,1	OR5H15	70	1	NM_001005515	exon1	c.C759A	p.G253G	CTATGGCCCCCTT	.	scavenged	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101595359	101595359	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	222	3	173	0	0.0135135	0	.	.	none	LRRK1_ENST00000388948,brain,primitive_neuroectodermal_tumour-medulloblastoma,+2,2	LRRK1	310	2	NM_024652	exon27	c.C4263T	p.A1421A	GGGCGCCCTAGGC	.	scavenged	Atlas-SNP
GALNT1	2589	hgsc.bcm.edu	37	18	33283603	33283603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100	14	49	0	0.14	0	.	.	none	.	GALNT1	53	.	NM_020474	exon10	c.C1529T	p.P510L	ATGACCCAGTGGT	.	PASS	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	37	2	166245192	166245192	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	185	2	248	1	0.0108108	0.00403226	.	.	none	SCN2A_ENST00000375437,NS,carcinoma,0,2	SCN2A	589	2	NM_001040143	exon26	c.C4876T	p.R1626X	CTGTTCCGAGTGA	.	scavenged	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	37	15	88727487	88727487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99	21	52	0	0.212121	0	.	.	none	.	NTRK3	587	.	NM_001243101	exon4	c.G292A	p.D98N	CCATGTCCACGGC	.	PASS	Atlas-SNP
SLC35G3	146861	hgsc.bcm.edu	37	17	33520358	33520358	+	Silent	SNP	A	A	G	rs74740601	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	167	4	186	2	0.0239521	0.0107527	.	.	weak	AMAC1,NS,carcinoma,0,1	.	.	1	NM_152462	exon1	c.T969C	p.I323I	GGCTGTAATGATG	.	scavenged	Atlas-SNP
CCNA1	8900	hgsc.bcm.edu	37	13	37011846	37011846	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	2	102	0	0.025974	0	.	.	none	CCNA1,NS,carcinoma,+1,1	CCNA1	91	1	NM_003914	exon3	c.G378A	p.G126G	CTGTGGGGTCCAA	.	scavenged	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	37	21	33371236	33371236	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100	33	121	0	0.33	0	.	.	none	.	HUNK	74	.	NM_014586	exon11	c.C1884T	p.N628N	TAAGAACAGCCCC	.	PASS	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	37	7	113519070	113519070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	353	4	252	0	0.0113314	0	.	.	none	PPP1R3A,NS,carcinoma,+1,1	PPP1R3A	317	1	NM_002711	exon4	c.A2077G	p.R693G	AACTCCTCGTATT	.	scavenged	Atlas-SNP
EEFSEC	60678	hgsc.bcm.edu	37	3	128060190	128060190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	215	3	155	0	0.0139535	0	.	.	none	EEFSEC,colon,carcinoma,0,2	EEFSEC	53	2	NM_021937	exon5	c.G901A	p.G301R	GAGCGCGGGTTGG	.	scavenged	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	37	8	118812014	118812014	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	188	26	102	0	0.138298	0	.	.	none	.	EXT1	98	.	NM_000127	exon11	c.C2178T	p.P726P	GAGGACGGGGTCG	.	PASS	Atlas-SNP
FMOD	2331	hgsc.bcm.edu	37	1	203316506	203316506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	259	4	339	0	0.015444	0	.	.	none	FMOD,NS,carcinoma,0,2	FMOD	49	2	NM_002023	exon2	c.T893C	p.L298P	AGGTCTAGCTCAA	.	scavenged	Atlas-SNP
TMPRSS12	283471	hgsc.bcm.edu	37	12	51237782	51237782	+	Silent	SNP	G	G	A	rs374807523		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90	40	111	0	0.444444	0	.	.	weak	.	TMPRSS12	33	.	NM_182559	exon2	c.G345A	p.R115R	AGAGAGGTGGGTC	.	PASS	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	37	2	189927788	189927788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	68	8	81	0	0.117647	0	.	.	none	.	COL5A2	230	.	NM_000393	exon28	c.G1871A	p.G624D	GGGTCACCCTAAA	.	PASS	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	37	14	79175759	79175759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163	46	118	0	0.282209	0	.	.	none	.	NRXN3	342	.	NM_004796	exon4	c.A302G	p.D101G	CCTTTGACTTCCG	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871058	170871058	+	Silent	SNP	G	G	A	rs113440919		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	105	3	87	1	0.0285714	0.0114943	G|0.500;A|0.500	0.500	weak	TBP,caecum,carcinoma,0,1	TBP	58	1	NM_003194	exon3	c.G234A	p.Q78Q	GCAGCAGCAGCAG	.	scavenged	Atlas-SNP
GTF3C2	2976	hgsc.bcm.edu	37	2	27549652	27549652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	113	3	135	0	0.0265487	0	.	.	none	GTF3C2,caecum,carcinoma,+1,1	GTF3C2	73	1	NM_001521	exon20	c.G2626T	p.A876S	GCATACGGTGGCC	.	scavenged	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126408517	126408517	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	36	10	69	0	0.277778	0	.	.	none	.	FAT4	1752	.	NM_024582	exon16	c.A12834G	p.V4278V	CAAAGTATATTTT	.	PASS	Atlas-SNP
KLRC2	3822	hgsc.bcm.edu	37	12	10588526	10588526	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	517	5	599	1	0.00967118	0.00166945	.	.	none	KLRC2,colon,carcinoma,-2,1	KLRC2	29	1	NM_002260	exon1	c.G60A	p.Q20Q	CCTTTGCTGCCGC	.	scavenged	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852237	97852237	+	Silent	SNP	A	A	G	rs150614363		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	237	35	257	0	0.147679	0	A|1.000;G|0.000	0.000	weak	.	OR5H1	71	.	NM_001005338	exon1	c.A696G	p.K232K	TGATAAAGGTGTA	.	PASS	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	37	6	76018589	76018589	+	Missense_Mutation	SNP	G	G	A	rs369386052		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	174	57	149	0	0.327586	0	.	.	weak	FILIP1,right_upper_lobe,carcinoma,0,1	FILIP1	173	1	NM_015687	exon6	c.C3460T	p.R1154W	TAGGCCGCTGGGA	.	PASS	Atlas-SNP
PYDC2	152138	hgsc.bcm.edu	37	3	191179233	191179233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	119	4	95	0	0.0336134	0	.	.	none	PYDC2,NS,carcinoma,0,1	PYDC2	24	1	NM_001083308	exon1	c.G282A	p.M94I	TGTGATGCCCCCA	.	scavenged	Atlas-SNP
CDKL2	8999	hgsc.bcm.edu	37	4	76507055	76507055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	91	40	94	0	0.43956	0	.	.	none	.	CDKL2	58	.	NM_003948	exon11	c.A1470C	p.E490D	CTGGTGTTCCATT	.	PASS	Atlas-SNP
TMSB4X	7114	hgsc.bcm.edu	37	X	12994407	12994407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212	141	366	0	0.665094	0	.	.	none	.	TMSB4X	3	.	NM_021109	exon2	c.G27C	p.E9D	GGCTGAGATCGAG	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100680261	100680261	+	Missense_Mutation	SNP	C	C	G	rs141195508	bycluster;byfrequency;alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	86	25	69	9	0.290698	0.130435	C|0.997;G|0.002	0.002	alt	MUC17,NS,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.C5564G	p.T1855S	AAGGTACCAGCAT	.	scavenged	Atlas-SNP
CYP2A13	1553	hgsc.bcm.edu	37	19	41599616	41599616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	189	3	208	0	0.015873	0	.	.	none	CYP2A13,mucosal,malignant_melanoma,-1,1	CYP2A13	90	1	NM_000766	exon6	c.A913G	p.T305A	ACTGAGACCGTGA	.	scavenged	Atlas-SNP
MYADM	91663	hgsc.bcm.edu	37	19	54377236	54377236	+	Silent	SNP	C	C	T	rs376434685		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	84	36	72	0	0.428571	0	.	.	weak	.	MYADM	39	.	NM_138373	exon3	c.C453T	p.Y151Y	GGCTTACGCCACC	.	PASS	Atlas-SNP
OR5T1	390155	hgsc.bcm.edu	37	11	56043714	56043714	+	Silent	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	315	115	402	0	0.365079	0	.	.	none	OR5T1,NS,carcinoma,0,1	OR5T1	95	1	NM_001004745	exon1	c.T600G	p.S200S	TATTTCTTGTTCT	.	PASS	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	37	2	26654770	26654770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	156	3	203	1	0.0192308	0.00492611	.	.	none	CCDC164,NS,carcinoma,-1,1	CCDC164	84	1	NM_145038	exon7	c.C784T	p.R262C	AACAACCGCATGA	.	scavenged	Atlas-SNP
PADI6	353238	hgsc.bcm.edu	37	1	17701957	17701957	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60	4	32	0	0.0666667	0	.	.	none	.	PADI6	51	.	NM_207421	exon3	c.C330T	p.A110A	GGATGCCCCCGTG	.	PASS	Atlas-SNP
KLF15	28999	hgsc.bcm.edu	37	3	126070934	126070934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	389	96	331	0	0.246787	0	.	.	none	.	KLF15	40	.	NM_014079	exon2	c.T832G	p.F278V	GCACAAACTTGGA	.	PASS	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	37	2	206110509	206110509	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169	61	234	0	0.360947	0	.	.	none	.	PARD3B	314	.	NM_205863	exon16	c.T2148C	p.D716D	GCCAGATGAAAGC	.	PASS	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57764952	57764952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127	2	116	0	0.015748	0	.	.	none	CCDC135,NS,carcinoma,+1,1	CCDC135	97	1	NM_032269	exon17	c.G2501A	p.R834H	TGTTCCGCATCCG	.	scavenged	Atlas-SNP
NPFFR2	10886	hgsc.bcm.edu	37	4	72994352	72994352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	156	2	200	0	0.0128205	0	.	.	none	NPFFR2,NS,malignant_melanoma,+1,1	NPFFR2	98	1	NM_004885	exon2	c.C350T	p.P117L	GGCATCCCATCTG	.	scavenged	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	37	10	43316002	43316002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	173	2	198	1	0.0115607	0.00505051	.	.	none	BMS1,colon,carcinoma,0,3	BMS1	132	3	NM_014753	exon17	c.G2816A	p.R939Q	AGTCCCGAGATCC	.	scavenged	Atlas-SNP
TEX10	54881	hgsc.bcm.edu	37	9	103090132	103090132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	125	51	162	0	0.408	0	.	.	none	.	TEX10	99	.	NM_001161584	exon8	c.G1747A	p.A583T	CTGCAGCGGTATG	.	PASS	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12919098	12919098	+	Silent	SNP	G	G	A	rs2281065	byhapmap	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	210	5	222	4	0.0238095	0.018018	G|1.000;|0.000	.	weak	PRAMEF2,colon,carcinoma,0,1	PRAMEF2	85	1	NM_023014	exon2	c.G234A	p.L78L	GCCATTGAAAGCA	.	scavenged	Atlas-SNP
AQP7	364	hgsc.bcm.edu	37	9	33385750	33385750	+	Missense_Mutation	SNP	C	C	T	rs114484742	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	65	13	70	11	0.2	0.157143	.	.	weak	AQP7,colon,carcinoma,0,1	AQP7	58	1	NM_001170	exon7	c.G640A	p.G214R	ACACCCCGATGAT	.	scavenged	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921136	12921136	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	197	3	214	3	0.0152284	0.0140187	.	.	none	PRAMEF2,pharynx,carcinoma,0,1	PRAMEF2	85	1	NM_023014	exon4	c.C927T	p.D309D	AGAGGACTTGAAG	.	scavenged	Atlas-SNP
AADACL3	126767	hgsc.bcm.edu	37	1	12785877	12785877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137	52	154	0	0.379562	0	.	.	none	.	AADACL3	84	.	NM_001103170	exon4	c.C967T	p.L323F	GGAGTGCTCAGGA	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97851659	97851659	+	Missense_Mutation	SNP	A	A	T	rs199787047	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	810	11	654	3	0.0135802	0.00458716	A|0.978;T|0.022	0.022	strong	OR5H1,NS,carcinoma,-2,7	OR5H1	71	7	NM_001005338	exon1	c.A118T	p.M40L	ACCATCATGGGGA	.	scavenged	Atlas-SNP
UNC5B	219699	hgsc.bcm.edu	37	10	73053316	73053316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	45	23	49	0	0.511111	0	.	.	none	.	UNC5B	123	.	NM_170744	exon12	c.C1927T	p.Q643X	GCCCACCAGGGCC	.	PASS	Atlas-SNP
MBD1	4152	hgsc.bcm.edu	37	18	47799950	47799950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	88	2	35	0	0.0227273	0	.	.	none	MBD1_ENST00000457839,NS,malignant_melanoma,-1,4	MBD1	228	4	NM_001204137	exon13	c.C1505A	p.T502K	GCTTCTGTGGAAG	.	scavenged	Atlas-SNP
UGT1A3	54659	hgsc.bcm.edu	37	2	234638243	234638243	+	Silent	SNP	C	C	T	rs375083511		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	258	105	277	1	0.406977	0.00361011	.	.	weak	.	UGT1A3	91	.	NM_019093	exon1	c.C471T	p.C157C	CCTCTGCGCGGCA	.	PASS	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	37	12	130926675	130926675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127	52	157	0	0.409449	0	.	.	none	RIMBP2,colon,carcinoma,+2,1	RIMBP2	220	1	NM_015347	exon8	c.G1171A	p.V391M	CCACCACCACGTC	.	PASS	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	37	11	5664047	5664047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	97	4	85	0	0.0412371	0	.	.	none	.	TRIM6-TRIM34	68	.	NM_001003819	exon13	c.A1937G	p.E646G	TTTCAGAACTGAC	.	PASS	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	37	3	97868377	97868377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	809	8	686	8	0.00988875	0.0116618	.	.	none	OR5H14,NS,malignant_melanoma,-2,1	OR5H14	56	1	NM_001005514	exon1	c.T148C	p.W50R	GTCATCTGGAAAG	.	scavenged	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	37	12	6702746	6702746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	25	88	0	0.324675	0	.	.	none	.	CHD4	539	.	NM_001273	exon16	c.C2350G	p.L784V	TAGAAAGAGGGGC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507064	195507064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	177	6	165	3	0.0338983	0.0181818	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C11387G	p.T3796S	GTGTCGGTGACAG	.	scavenged	Atlas-SNP
SLC22A23	63027	hgsc.bcm.edu	37	6	3273638	3273638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	92	27	48	0	0.293478	0	.	.	none	SLC22A23_ENST00000406686,colon,carcinoma,-1,2	SLC22A23	89	2	NM_015482	exon10	c.G1712A	p.G571E	CCCAGCCCGCCAC	.	PASS	Atlas-SNP
CCR3	1232	hgsc.bcm.edu	37	3	46307515	46307515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	142	45	122	0	0.316901	0	.	.	none	.	CCR3	52	.	NM_178328	exon3	c.T929G	p.I310S	AGGTGATCGCCTA	.	PASS	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	37	17	16068468	16068468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	329	3	394	0	0.00911854	0	.	.	none	NCOR1,NS,carcinoma,-1,1	NCOR1	240	1	NM_001190440	exon4	c.C443A	p.A148E	CCGAATGCTGGAT	.	scavenged	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	37	18	66721311	66721311	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39	15	28	0	0.384615	0	.	.	none	CCDC102B,NS,carcinoma,0,1	CCDC102B	92	1	NM_001093729	exon10	c.G1479A	p.L493L	GTCTCTGGATGAA	.	PASS	Atlas-SNP
MKRN2	23609	hgsc.bcm.edu	37	3	12610409	12610409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	172	42	128	0	0.244186	0	.	.	none	.	MKRN2	32	.	NM_014160	exon2	c.A62G	p.Q21R	GAAGTCAGTGCCT	.	PASS	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140574381	140574381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	64	84	0	0.5	0	.	.	none	.	PCDHB10	177	.	NM_018930	exon1	c.G2256T	p.Q752H	CTACCAGTATGAG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093448	1093448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	62	4	89	2	0.0645161	0.0224719	.	.	none	MUC2_ENST00000441003,NS,carcinoma,0,8	MUC2	614	8	NM_002457	exon30	c.C5267A	p.T1756N	CCCCAACCCCGAC	.	scavenged	Atlas-SNP
GABRB1	2560	hgsc.bcm.edu	37	4	47427752	47427752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	74	30	73	0	0.405405	0	.	.	none	GABRB1,NS,carcinoma,-1,1	GABRB1	107	1	NM_000812	exon9	c.C1142T	p.S381L	GTGGCTCGGAAGT	.	PASS	Atlas-SNP
GPCPD1	56261	hgsc.bcm.edu	37	20	5559162	5559162	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154	71	130	0	0.461039	0	.	.	none	.	GPCPD1	52	.	NM_019593	exon8	c.T569G	p.L190X	CTTATTAAGGATA	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12397001	12397001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133	37	134	0	0.278196	0	.	.	none	.	VWDE	123	.	NM_001135924	exon17	c.A3415C	p.S1139R	AAACACTTGCCCC	.	PASS	Atlas-SNP
NBPF15	284565	hgsc.bcm.edu	37	1	148594455	148594455	+	Missense_Mutation	SNP	A	A	G	rs1043751	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	289	33	319	32	0.114187	0.100313	A|0.996;G|0.004	0.004	strong	NBPF15,NS,carcinoma,-1,1	NBPF15	20	1	NM_173638	exon19	c.A1828G	p.R610G	CTGGATAGATGTT	.	scavenged	Atlas-SNP
DNAI2	64446	hgsc.bcm.edu	37	17	72287205	72287205	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	111	53	123	0	0.477477	0	.	.	none	.	DNAI2	102	.	NM_001172810	exon6	c.C657T	p.L219L	TCCACTCGTGACG	.	PASS	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	37	18	56057939	56057939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211	44	168	0	0.208531	0	.	.	none	.	NEDD4L	126	.	NM_001144967	exon29	c.C2717T	p.S906L	GGACATCGCGAGT	.	PASS	Atlas-SNP
THRB	7068	hgsc.bcm.edu	37	3	24231565	24231565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103	26	88	0	0.252427	0	.	.	none	.	THRB	52	.	NM_000461	exon4	c.G283A	p.G95R	GGTTACCTTTACA	.	PASS	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14787093	14787093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	478	74	367	0	0.154812	0	.	.	none	.	ANKRD30B	237	.	NM_001145029	exon15	c.T1728A	p.D576E	TTGGGATTCTGAG	.	PASS	Atlas-SNP
FAM96A	84191	hgsc.bcm.edu	37	15	64380994	64380994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	168	2	153	0	0.0119048	0	.	.	none	FAM96A,NS,carcinoma,+2,1	FAM96A	18	1	NM_032231	exon2	c.G181A	p.V61M	AGACCACTTCCAG	.	scavenged	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	37	11	55861587	55861587	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	105	2	119	0	0.0190476	0	.	.	none	OR8I2,NS,carcinoma,0,2	OR8I2	119	2	NM_001003750	exon1	c.C804T	p.T268T	GCTGACCCAGGCG	.	scavenged	Atlas-SNP
ANTXR2	118429	hgsc.bcm.edu	37	4	80899206	80899206	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	296	105	331	1	0.35473	0.00302115	.	.	none	.	ANTXR2	97	.	NM_001145794	exon15	c.A1302G	p.K434K	TGTGGGTTTGGGT	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11188884	11188884	+	Missense_Mutation	SNP	G	G	A	rs141484171	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	239	18	244	3	0.0753138	0.0122951	G|0.999;A|0.001	0.001	strong	AMAC1L2,NS,carcinoma,+1,1	.	.	1	NM_054028	exon1	c.G269A	p.R90H	AACTGCGTGGCGA	.	scavenged	Atlas-SNP
CBWD6	644019	hgsc.bcm.edu	37	9	69247582	69247582	+	Splice_Site	SNP	G	G	C	rs76283403		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	54	2	52	1	0.037037	0.0192308	G|0.500;C|0.500	0.500	weak	CBWD6,NS,neuroblastoma,0,1	CBWD6	19	1	NM_001085457	exon6	c.431-1C>G	.	CTGCACGTGAAAA	.	scavenged	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151919670	151919670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	297	9	334	7	0.030303	0.0209581	.	.	none	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3	1564	2	NM_170606	exon21	c.C3421T	p.P1141S	ACGCAGGCATATA	.	scavenged	Atlas-SNP
RNF220	55182	hgsc.bcm.edu	37	1	44878186	44878186	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	195	2	164	1	0.0102564	0.00609756	.	.	none	RNF220,NS,carcinoma,+2,2	RNF220	56	2	NM_018150	exon2	c.C417T	p.A139A	GCCGGCCAAGCGA	.	scavenged	Atlas-SNP
KLHL10	317719	hgsc.bcm.edu	37	17	39994253	39994253	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	182	3	193	0	0.0164835	0	.	.	none	KLHL10,caecum,carcinoma,+1,1	KLHL10	67	1	NM_152467	exon1	c.G69A	p.A23A	GAGTGCGATGGCC	.	scavenged	Atlas-SNP
RAF1	5894	hgsc.bcm.edu	37	3	12627284	12627284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	81	16	54	0	0.197531	0	.	.	none	RAF1,NS,lymphoid_neoplasm,0,2	RAF1	66	2	NM_002880	exon14	c.G1432A	p.E478K	AGCCTTCATGGAG	.	PASS	Atlas-SNP
INSIG2	51141	hgsc.bcm.edu	37	2	118864361	118864361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	185	2	224	0	0.0108108	0	.	.	none	INSIG2,NS,carcinoma,-1,2	INSIG2	30	2	NM_016133	exon4	c.C418A	p.L140I	GCTGCACTATCCA	.	scavenged	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	37	12	102131710	102131710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	70	4	99	0	0.0571429	0	.	.	none	.	SYCP3	19	.	NM_001177949	exon2	c.G4A	p.V2M	AGGACACCATATT	.	PASS	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	37	2	192700876	192700876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	51	137	0	0.398438	0	.	.	none	.	SDPR	67	.	NM_004657	exon2	c.A1051C	p.I351L	CTGCAATTTCCCC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152284337	152284337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	342	121	440	1	0.353801	0.00227273	.	.	none	.	FLG	900	.	NM_002016	exon3	c.C3025G	p.H1009D	CTGCGTGAGGAGT	.	PASS	Atlas-SNP
C12orf52	84934	hgsc.bcm.edu	37	12	113629195	113629195	+	Missense_Mutation	SNP	G	G	A	rs368110690		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	51	16	50	0	0.313726	0	.	.	weak	C12orf52,colon,carcinoma,0,1	C12orf52	19	1	NM_032848	exon4	c.G383A	p.R128Q	CCCCGCGGATGGC	.	PASS	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54792317	54792317	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	207	73	225	0	0.352657	0	.	.	none	.	UNC13C	674	.	NM_001080534	exon19	c.G5101C	p.E1701Q	GAAAACGAAGATG	.	PASS	Atlas-SNP
ARL6IP4	51329	hgsc.bcm.edu	37	12	123465786	123465786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	139	45	165	0	0.323741	0	.	.	none	ARL6IP4,NS,carcinoma,-2,1	ARL6IP4	14	1	NM_018694	exon2	c.A469G	p.R157G	ACCTCGAGGAACT	.	PASS	Atlas-SNP
LRRFIP1	9208	hgsc.bcm.edu	37	2	238688143	238688143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	55	24	60	0	0.436364	0	.	.	none	.	LRRFIP1	171	.	NM_001137550	exon24	c.G1891A	p.A631T	ATGAAAGCAAATC	.	PASS	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234603278	234603278	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	208	3	243	0	0.0144231	0	.	.	none	TARBP1,NS,carcinoma,0,1	TARBP1	111	1	NM_005646	exon4	c.G1218A	p.K406K	AAGAATCTTTGTT	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505763	195505763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	167	5	160	3	0.0299401	0.01875	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,4	MUC4	1505	4	NM_018406	exon2	c.C12688T	p.L4230F	AGGAAAGGCTGGT	.	scavenged	Atlas-SNP
PLEKHM3	389072	hgsc.bcm.edu	37	2	208795754	208795754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	150	66	177	0	0.44	0	.	.	none	.	PLEKHM3	101	.	NM_001080475	exon5	c.C1782A	p.H594Q	CTCTGCGTGGTGG	.	PASS	Atlas-SNP
HPDL	84842	hgsc.bcm.edu	37	1	45793485	45793485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	79	31	90	0	0.392405	0	.	.	none	.	HPDL	14	.	NM_032756	exon1	c.G665A	p.G222D	AGCCGGGCAGCAT	.	PASS	Atlas-SNP
ZBTB20	26137	hgsc.bcm.edu	37	3	114057923	114057923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99	2	88	0	0.020202	0	.	.	none	ZBTB20_ENST00000474710,NS,carcinoma,0,4	ZBTB20	157	4	NM_001164342	exon5	c.G2155A	p.V719I	GGCAGACGGAGCA	.	scavenged	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	37	1	103449740	103449740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	12	6	24	0	0.5	0	.	.	none	COL11A1_ENST00000370096,right_lower_lobe,carcinoma,+1,4	COL11A1	972	4	NM_080629	exon31	c.T2546C	p.L849P	ACTCCAAGTTTTC	.	PASS	Atlas-SNP
PGBD4	161779	hgsc.bcm.edu	37	15	34396115	34396115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	45	14	24	0	0.311111	0	.	.	none	.	PGBD4	58	.	NM_152595	exon1	c.C1383A	p.H461Q	TCTACACATTACA	.	PASS	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	37	11	129801147	129801147	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	140	43	99	0	0.307143	0	.	.	none	.	PRDM10	120	.	NM_020228	exon11	c.C1294T	p.L432L	AATGTAGCAAGTC	.	PASS	Atlas-SNP
ZNF461	92283	hgsc.bcm.edu	37	19	37129817	37129817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94	34	105	0	0.361702	0	.	.	none	.	ZNF461	73	.	NM_153257	exon6	c.C1430T	p.A477V	CTAAAGGCCTTAC	.	PASS	Atlas-SNP
ENPP4	22875	hgsc.bcm.edu	37	6	46111076	46111076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100	4	97	0	0.04	0	.	.	none	.	ENPP4	44	.	NM_014936	exon4	c.C1061T	p.P354L	ACGGACCTGCATT	.	PASS	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	37	18	3188926	3188926	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	462	6	269	2	0.012987	0.00743494	.	.	none	MYOM1,NS,carcinoma,0,1	MYOM1	192	1	NM_003803	exon4	c.G591A	p.T197T	GGATGCCGTGGAC	.	scavenged	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279438	1279438	+	Missense_Mutation	SNP	C	C	T	rs202041848	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137	26	135	24	0.189781	0.177778	.	.	weak	TPSB2,NS,carcinoma,0,1	TPSB2	8	1	NM_024164	exon4	c.G253A	p.A85T	TGAGGGCGGCCAG	.	scavenged	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	37	7	101559405	101559405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206	4	115	0	0.0194175	0	.	.	none	CUX1_ENST00000292538,colon,carcinoma,-1,4	CUX1	253	4	NM_001202544	exon2	c.A74G	p.D25G	AACTCGATGCCAC	.	scavenged	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	37	5	140264046	140264046	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103	79	73	0	0.76699	0	.	.	none	.	PCDHA13	213	.	NM_031865	exon1	c.G2193A	p.A731A	GGGCGCGTGCGCG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276386	152276386	+	Missense_Mutation	SNP	G	G	T	rs199655799	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212	3	221	0	0.0141509	0	.	.	weak	FLG,NS,carcinoma,-1,1	FLG	900	1	NM_002016	exon3	c.C10976A	p.S3659Y	CCACTGGACCCTC	.	scavenged	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	rs140737545		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39	8	23	0	0.205128	0	.	.	weak	CDC27_ENST00000531206,NS,carcinoma,0,20	CDC27	337	20	NM_001114091	exon12	c.A1477G	p.I493V	TCAAAATATTTAT	.	scavenged	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87615870	87615870	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	138	57	159	0	0.413043	0	.	.	none	.	GRID1	204	.	NM_017551	exon7	c.G1029A	p.W343X	GCTATGCCACTTC	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6125705	6125705	+	Missense_Mutation	SNP	C	C	T	rs373074982		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	112	4	130	0	0.0357143	0	.	.	weak	VWF,NS,carcinoma,+1,1	VWF	338	1	NM_000552	exon30	c.G5288A	p.R1763Q	CCCTCCCGCTGCA	.	scavenged	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109689973	109689973	+	Silent	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	71	28	103	0	0.394366	0	.	.	none	ZNF462,rectum,carcinoma,0,1	ZNF462	322	1	NM_021224	exon3	c.G3780T	p.T1260T	CAAAACGAAACTC	.	PASS	Atlas-SNP
TDRD10	126668	hgsc.bcm.edu	37	1	154519897	154519897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	228	3	231	0	0.0131579	0	.	.	none	TDRD10,caecum,carcinoma,0,2	TDRD10	48	2	NM_182499	exon12	c.C965T	p.S322L	TGAGTTCGTATGA	.	scavenged	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	37	14	24534335	24534335	+	Silent	SNP	A	A	C	rs8020089		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66	21	70	18	0.318182	0.257143	.	.	weak	LRRC16B,NS,carcinoma,0,1	LRRC16B	120	1	NM_138360	exon33	c.A3249C	p.P1083P	ACCCCCACCCCCT	.	scavenged	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	37	1	157494098	157494098	+	Missense_Mutation	SNP	C	C	T	rs182413546	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	311	4	339	0	0.0128617	0	C|1.000;T|0.000	0.000	strong	FCRL5,right_upper_lobe,carcinoma,-1,1	FCRL5	177	1	NM_031281	exon10	c.G2210A	p.R737H	TCACTGCGCTGGG	.	scavenged	Atlas-SNP
SDHAF2	54949	hgsc.bcm.edu	37	11	61205178	61205178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	171	78	180	0	0.45614	0	.	.	none	.	SDHAF2	26	.	NM_017841	exon2	c.C118T	p.P40S	GACAGCCCAACAG	.	PASS	Atlas-SNP
MPP7	143098	hgsc.bcm.edu	37	10	28412969	28412969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	51	19	62	0	0.372549	0	.	.	none	.	MPP7	60	.	NM_173496	exon10	c.A606G	p.I202M	AATCTGTATTATT	.	PASS	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	37	3	184290807	184290807	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	139	45	99	0	0.323741	0	.	.	none	.	EPHB3	114	.	NM_004443	exon3	c.G699A	p.S233S	CACCTCGCTGGTC	.	PASS	Atlas-SNP
DMP1	1758	hgsc.bcm.edu	37	4	88580612	88580612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	175	61	217	0	0.348571	0	.	.	none	.	DMP1	72	.	NM_004407	exon5	c.A165C	p.K55N	CAGTAAAGTTAGC	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100680017	100680017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	166	4	97	3	0.0240964	0.0309278	.	.	none	MUC17,right_lower_lobe,carcinoma,-1,1	MUC17	804	1	NM_001040105	exon3	c.A5320G	p.I1774V	ACTCCTATTGACA	.	scavenged	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	37	12	56481846	56481846	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	98	2	110	0	0.0204082	0	.	.	none	ERBB3_ENST00000267101,NS,carcinoma,+2,2	ERBB3	350	2	NM_001982	exon7	c.C774T	p.R258R	ACCTCGCTGTCCA	.	scavenged	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	37	14	71514637	71514637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	378	5	236	0	0.0132275	0	.	.	none	PCNX,NS,carcinoma,+1,1	PCNX	198	1	NM_014982	exon22	c.A4274G	p.D1425G	AATTTGACTATGA	.	scavenged	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	37	19	8601222	8601222	+	Missense_Mutation	SNP	C	C	T	rs199663368	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	24	11	34	0	0.458333	0	C|1.000;T|0.000	0.000	strong	.	MYO1F	128	.	NM_012335	exon19	c.G1957A	p.V653I	GCTGGACGCCCTG	.	PASS	Atlas-SNP
PTPN4	5775	hgsc.bcm.edu	37	2	120725435	120725435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	52	19	59	0	0.365385	0	.	.	none	.	PTPN4	89	.	NM_002830	exon26	c.G2581A	p.V861I	ACTGGGGTTCTTA	.	PASS	Atlas-SNP
SERPINH1	871	hgsc.bcm.edu	37	11	75277624	75277624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	12	5	14	0	0.416667	0	.	.	none	.	SERPINH1	33	.	NM_001235	exon2	c.C230T	p.S77L	CCTCGTCGCTAGG	.	PASS	Atlas-SNP
LTV1	84946	hgsc.bcm.edu	37	6	144171346	144171346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	164	3	122	0	0.0182927	0	.	.	none	LTV1,NS,carcinoma,0,2	LTV1	48	2	NM_032860	exon4	c.C388T	p.P130S	GCAGCTCCAGTTT	.	scavenged	Atlas-SNP
POM121	9883	hgsc.bcm.edu	37	7	72412427	72412427	+	Missense_Mutation	SNP	G	G	A	rs2429277		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	595	51	352	20	0.0857143	0.0568182	.	.	weak	POM121,NS,malignant_melanoma,0,2	POM121	131	2	NM_172020	exon11	c.G1100A	p.S367N	CACCCAGCCTCCT	.	scavenged	Atlas-SNP
TMEM201	199953	hgsc.bcm.edu	37	1	9670573	9670573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39	14	53	0	0.358974	0	.	.	none	.	TMEM201	63	.	NM_001130924	exon9	c.C1475T	p.S492F	ACTTCTCTCTTCT	.	PASS	Atlas-SNP
FAM171A1	221061	hgsc.bcm.edu	37	10	15255310	15255310	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	203	4	164	0	0.0197044	0	.	.	none	FAM171A1,caecum,carcinoma,-1,1	FAM171A1	252	1	NM_001010924	exon8	c.T2277C	p.A759A	AGACAAAGCATCT	.	scavenged	Atlas-SNP
KRTAP19-5	337972	hgsc.bcm.edu	37	21	31874363	31874363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	129	4	151	1	0.0310078	0.00662252	.	.	none	KRTAP19-5,NS,carcinoma,0,1	KRTAP19-5	32	1	NM_181611	exon1	c.G46A	p.G16R	AGCCTCCGTAGCC	.	scavenged	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	37	6	168369872	168369872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	84	28	84	0	0.333333	0	.	.	none	.	MLLT4	351	.	NM_001207008	exon31	c.C5072T	p.S1691F	AGCGCTCTAAAAG	.	PASS	Atlas-SNP
ENOX1	55068	hgsc.bcm.edu	37	13	43987001	43987001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	64	22	89	0	0.34375	0	.	.	none	.	ENOX1	158	.	NM_017993	exon4	c.T50C	p.L17P	TGAGGAAGCTCCT	.	PASS	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	37	6	28227333	28227333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	80	44	88	0	0.55	0	.	.	none	.	NKAPL	72	.	NM_001007531	exon1	c.G184A	p.A62T	GTGGGCGCTCTTT	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82834917	82834917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103	44	112	0	0.427184	0	.	.	none	.	VCAN	498	.	NM_004385	exon8	c.A6095C	p.K2032T	TGCAAAAGTTTTC	.	PASS	Atlas-SNP
NR2E3	10002	hgsc.bcm.edu	37	15	72103180	72103180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	283	64	260	0	0.226148	0	.	.	none	.	NR2E3	53	.	NM_016346	exon1	c.G97T	p.G33C	AGATGGGGCCTGG	.	PASS	Atlas-SNP
KCNJ5	3762	hgsc.bcm.edu	37	11	128781671	128781671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	268	3	219	0	0.011194	0	.	.	none	KCNJ5,adrenal_gland,adrenal_cortical_adenoma,0,173	KCNJ5	560	173	NM_000890	exon2	c.T503C	p.L168P	TACTCCTCTTGGT	.	scavenged	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	37	7	70231244	70231244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163	2	76	0	0.0122699	0	.	.	none	AUTS2,caecum,carcinoma,-1,2	AUTS2	173	2	NM_001127231	exon9	c.C1613T	p.T538M	AGCACACGCACCA	.	scavenged	Atlas-SNP
GPRIN2	9721	hgsc.bcm.edu	37	10	46998893	46998893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163	2	218	0	0.0122699	0	.	.	none	GPRIN2,NS,carcinoma,-1,1	GPRIN2	94	1	NM_014696	exon3	c.C13T	p.R5C	TCCAGCCGCCCCG	.	scavenged	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	37	3	39174704	39174704	+	Silent	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108	34	112	0	0.314815	0	.	.	none	.	TTC21A	96	.	NM_145755	exon20	c.C2745A	p.V915V	GGATGTCTTCTCC	.	PASS	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	37	9	125620209	125620209	+	Missense_Mutation	SNP	C	C	T	rs368828068	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	160	4	202	0	0.025	0	.	.	alt	RC3H2_ENST00000423239,NS,carcinoma,-1,2	RC3H2	150	2	NM_018835	exon13	c.G2447A	p.R816H	TCCGCACGAAAGT	.	scavenged	Atlas-SNP
ADAMTS15	170689	hgsc.bcm.edu	37	11	130343214	130343214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133	3	119	0	0.0225564	0	.	.	none	ADAMTS15,NS,carcinoma,+1,1	ADAMTS15	103	1	NM_139055	exon8	c.T2351C	p.L784P	AGGTCCTCTCCGT	.	scavenged	Atlas-SNP
PEAR1	375033	hgsc.bcm.edu	37	1	156883019	156883019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108	50	133	0	0.462963	0	.	.	none	.	PEAR1	118	.	NM_001080471	exon19	c.A2456T	p.N819I	ACTCCAACCCCAG	.	PASS	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101605852	101605852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108	2	86	2	0.0185185	0.0232558	.	.	none	LRRK1_ENST00000388948,NS,adenocarcinoma,0,3	LRRK1	310	3	NM_024652	exon32	c.C5210T	p.T1737M	TGGTTACGTCAGT	.	scavenged	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	37	15	73616204	73616204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	6	67	0	0.0779221	0	.	.	none	.	HCN4	150	.	NM_005477	exon8	c.C2230A	p.Q744K	CAATCTGCTGGAT	.	PASS	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	37	21	37665692	37665692	+	Silent	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	119	2	128	0	0.0168067	0	.	.	none	DOPEY2,bladder,carcinoma,0,1	DOPEY2	184	1	NM_005128	exon37	c.C6720A	p.I2240I	CAGCATCAGGCAG	.	scavenged	Atlas-SNP
SLC1A7	6512	hgsc.bcm.edu	37	1	53569135	53569135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90	34	96	0	0.377778	0	.	.	none	.	SLC1A7	65	.	NM_006671	exon5	c.C580A	p.H194N	GCACATGGGAGCC	.	PASS	Atlas-SNP
FBXO15	201456	hgsc.bcm.edu	37	18	71749236	71749236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	187	30	106	0	0.160428	0	.	.	none	.	FBXO15	97	.	NM_001142958	exon9	c.A1189T	p.N397Y	CTCTGTTATTTTT	.	PASS	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60885315	60885315	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	47	18	44	0	0.382979	0	.	.	none	.	LAMA5	268	.	NM_005560	exon77	c.C10653T	p.P3551P	TGCCAGGGGCCGC	.	PASS	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106907486	106907486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196	86	232	0	0.438776	0	.	.	none	.	SORCS3	282	.	NM_014978	exon9	c.A1414C	p.T472P	TACTTCACTCTGG	.	PASS	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	25	2	13	0	0.08	0	.	.	none	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2	128	2	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	scavenged	Atlas-SNP
TFPI2	7980	hgsc.bcm.edu	37	7	93519470	93519470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	83	4	66	0	0.0481928	0	.	.	none	.	TFPI2	37	.	NM_006528	exon2	c.G250A	p.D84N	AAGCATCGTCGCA	.	PASS	Atlas-SNP
VPS8	23355	hgsc.bcm.edu	37	3	184616396	184616396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	241	64	222	0	0.26556	0	.	.	none	.	VPS8	109	.	NM_001009921	exon23	c.T2048C	p.I683T	CTATGATCTATGT	.	PASS	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	37	7	82997329	82997329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	143	30	123	0	0.20979	0	.	.	none	.	SEMA3E	125	.	NM_012431	exon17	c.A1901C	p.K634T	TCCATCTTAACCA	.	PASS	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	37	2	128379623	128379623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99	2	142	0	0.020202	0	.	.	none	MYO7B_ENST00000428314,caecum,carcinoma,-1,4	MYO7B	359	4	NM_001080527	exon27	c.C3514T	p.R1172C	CTGAGACGCACCT	.	scavenged	Atlas-SNP
KCNK18	338567	hgsc.bcm.edu	37	10	118969290	118969290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	75	31	86	0	0.413333	0	.	.	none	.	KCNK18	70	.	NM_181840	exon3	c.C635T	p.P212L	CAGGCCCCAAACT	.	PASS	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	37	2	29225519	29225519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95	35	156	0	0.368421	0	.	.	none	.	FAM179A	106	.	NM_199280	exon5	c.C545T	p.P182L	GCATCCCTACCAC	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28483809	28483809	+	Silent	SNP	G	G	A	rs149204675	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	393	6	475	2	0.0152672	0.00421053	G|0.998;A|0.002	0.002	strong	HERC2,NS,carcinoma,0,1	HERC2	501	1	NM_004667	exon24	c.C3687T	p.D1229D	CTTCCCGTCAATC	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017575	1017575	+	Silent	SNP	C	C	T	rs76222533	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	833	94	907	109	0.112845	0.120176	C|0.500;T|0.500	0.500	strong	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.G5226A	p.T1742T	TTTGGCCGTGCTA	.	scavenged	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2983885	2983885	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	292	160	239	0	0.547945	0	.	.	none	CARD11,colon,carcinoma,-2,6	CARD11	339	6	NM_032415	exon5	c.G645C	p.K215N	CATGTTCTTCTCC	.	PASS	Atlas-SNP
SLC17A7	57030	hgsc.bcm.edu	37	19	49937049	49937049	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58	3	62	0	0.0517241	0	.	.	none	SLC17A7,caecum,carcinoma,-1,1	SLC17A7	57	1	NM_020309	exon7	c.G801A	p.S267S	CTCCTCCGAGATG	.	scavenged	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	37	17	39019783	39019783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99	36	139	0	0.363636	0	.	.	none	.	KRT12	53	.	NM_000223	exon5	c.G1049A	p.R350H	AAGGCGCGACGCA	.	PASS	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	37	X	80064532	80064532	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	123	83	253	1	0.674797	0.00395257	.	.	none	.	BRWD3	251	.	NM_153252	exon3	c.C100T	p.Q34X	GCTCCTGCACTAG	.	PASS	Atlas-SNP
ZFX	7543	hgsc.bcm.edu	37	X	24229464	24229464	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	147	100	292	0	0.680272	0	.	.	none	.	ZFX	61	.	NM_003410	exon10	c.C2389T	p.R797X	ATAATGCGACATC	.	PASS	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	37	16	10274133	10274133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	40	16	49	0	0.4	0	.	.	none	GRIN2A,NS,carcinoma,0,1	GRIN2A	366	1	NM_000833	exon3	c.G136A	p.V46M	CTGTCACGTCGTG	.	PASS	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	37	X	100497418	100497418	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	70	53	190	0	0.757143	0	.	.	none	.	DRP2	98	.	NM_001939	exon8	c.C933T	p.S311S	GAATTCCCAGGCC	.	PASS	Atlas-SNP
NPW	283869	hgsc.bcm.edu	37	16	2070164	2070164	+	Missense_Mutation	SNP	C	C	T	rs2286471	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	14	5	6	0	0.357143	0	C|0.821;T|0.179	0.179	strong	.	NPW	4	.	NM_001099456	exon1	c.C262T	p.P88S	GAGGCTCCTCTCC	.	PASS	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	37	4	47593309	47593309	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	71	28	106	0	0.394366	0	.	.	none	.	ATP10D	168	.	NM_020453	exon23	c.T4192G	p.L1398V	GGAAACTTATCTC	.	PASS	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	37	2	109382170	109382170	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	431	8	550	5	0.0185615	0.00909091	.	.	none	RANBP2_ENST00000283195,NS,carcinoma,0,6	RANBP2	488	6	NM_006267	exon20	c.A5175G	p.E1725E	GAAGGAAGGACAG	.	scavenged	Atlas-SNP
BARHL2	343472	hgsc.bcm.edu	37	1	91180266	91180266	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133	48	159	0	0.360902	0	.	.	none	BARHL2,NS,carcinoma,+1,1	BARHL2	62	1	NM_020063	exon2	c.C673G	p.P225A	CAGGGGGACTCTC	.	PASS	Atlas-SNP
TNK2	10188	hgsc.bcm.edu	37	3	195605200	195605200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212	47	160	0	0.221698	0	.	.	none	.	TNK2	246	.	NM_001010938	exon9	c.C1369T	p.R457W	GGGCCCGCATGTC	.	PASS	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	37	14	23851691	23851691	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	193	2	180	0	0.0103627	0	.	.	none	MYH6,rectum,carcinoma,0,1	MYH6	274	1	NM_002471	exon38	c.C5742T	p.I1914I	CTCAGCGATGTCC	.	scavenged	Atlas-SNP
ZCCHC17	51538	hgsc.bcm.edu	37	1	31821801	31821801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	187	3	201	0	0.0160428	0	.	.	none	ZCCHC17,face,carcinoma,0,1	ZCCHC17	30	1	NM_016505	exon7	c.C544T	p.P182S	AGGAATCCTTCTA	.	scavenged	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22669489	22669489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	472	70	235	0	0.148305	0	.	.	none	.	ZNF521	269	.	NM_015461	exon7	c.A3846C	p.E1282D	CTTGTCTTCTTGT	.	PASS	Atlas-SNP
MYF6	4618	hgsc.bcm.edu	37	12	81101689	81101689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58	25	67	0	0.431034	0	.	.	none	MYF6,NS,carcinoma,0,1	MYF6	74	1	NM_002469	exon1	c.C191T	p.A64V	TCCTGGCGCCCCC	.	PASS	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	37	7	96639340	96639340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	190	39	123	0	0.205263	0	.	.	none	.	DLX6	37	.	NM_005222	exon3	c.A863C	p.Q288P	CGATGCAGAGACC	.	PASS	Atlas-SNP
KRT5	3852	hgsc.bcm.edu	37	12	52909593	52909593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	121	2	116	0	0.0165289	0	.	.	none	KRT5,NS,carcinoma,0,1	KRT5	88	1	NM_000424	exon8	c.C1463A	p.P488Q	TTGACTGGTCCAA	.	scavenged	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	37	15	48703210	48703210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	155	65	243	0	0.419355	0	.	.	none	.	FBN1	310	.	NM_000138	exon66	c.A8593C	p.K2865Q	GGATTTTCATCTT	.	PASS	Atlas-SNP
SLC25A36	55186	hgsc.bcm.edu	37	3	140692754	140692754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60	1	53	0	0.0166667	0	.	.	none	SLC25A36,NS,carcinoma,-2,1	SLC25A36	24	1	NM_018155	exon6	c.G649T	p.E217X	AATGATGAAGAGT	.	scavenged	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	37	7	128489252	128489252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	254	70	181	1	0.275591	0.00552486	.	.	none	FLNC,NS,carcinoma,0,1	FLNC	339	1	NM_001127487	exon29	c.G4945A	p.G1649S	GGCCATGGCCTGG	.	scavenged	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42356853	42356853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	135	39	121	0	0.288889	0	.	.	none	LRFN5,NS,carcinoma,-1,2	LRFN5	269	2	NM_152447	exon3	c.T1025G	p.L342R	GAACACTTGACAT	.	PASS	Atlas-SNP
SCYL2	55681	hgsc.bcm.edu	37	12	100729435	100729435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	160	3	232	0	0.01875	0	.	.	none	SCYL2,caecum,carcinoma,+1,1	SCYL2	99	1	NM_017988	exon15	c.C1895T	p.S632F	ATGTTTCTGAGGA	.	scavenged	Atlas-SNP
ITIH4	3700	hgsc.bcm.edu	37	3	52860923	52860923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	132	4	134	0	0.030303	0	.	.	none	ITIH4,NS,carcinoma,+1,1	ITIH4	74	1	NM_001166449	exon4	c.G403A	p.A135T	TGGGAGCCACACT	.	scavenged	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	37	9	113562830	113562830	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	132	4	129	0	0.030303	0	.	.	none	MUSK,right_upper_lobe,carcinoma,+2,1	MUSK	112	1	NM_005592	exon14	c.A2172G	p.R724R	TCACCGAGATTTA	.	scavenged	Atlas-SNP
POTED	317754	hgsc.bcm.edu	37	21	15011839	15011839	+	Silent	SNP	T	T	C	rs79514853		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108	5	146	0	0.0462963	0	T|0.500;C|0.500	0.500	weak	POTED,NS,carcinoma,0,1	POTED	57	1	NM_174981	exon10	c.T1413C	p.D471D	TAGTGATGAACAA	.	scavenged	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	37	18	59166652	59166652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211	23	113	0	0.109005	0	.	.	none	.	CDH20	117	.	NM_031891	exon2	c.C480A	p.D160E	CAATGACAATGAG	.	PASS	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	37	15	27777873	27777873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	151	56	184	0	0.370861	0	.	.	none	.	GABRG3	115	.	NM_033223	exon10	c.T1250G	p.F417C	AGAGCTTCTTCTG	.	PASS	Atlas-SNP
AOX1	316	hgsc.bcm.edu	37	2	201499567	201499567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	132	2	130	0	0.0151515	0	.	.	none	AOX1,NS,carcinoma,0,1	AOX1	152	1	NM_001159	exon21	c.C2275T	p.L759F	AGCATGCTTGTCG	.	scavenged	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	37	2	116257116	116257116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	134	51	204	0	0.380597	0	.	.	none	.	DPP10	415	.	NM_001178034	exon4	c.G314T	p.G105V	AGAATGGACATGT	.	PASS	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	37	10	48389465	48389465	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	52	2	91	0	0.0384615	0	.	.	none	RBP3,NS,carcinoma,-1,2	RBP3	152	2	NM_002900	exon1	c.G1413A	p.T471T	GTGCTCCGTGTCC	.	scavenged	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	87089240	87089240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	201	55	244	0	0.273632	0	.	.	none	AGBL1,NS,carcinoma,+1,1	AGBL1	151	1	NM_152336	exon19	c.G2555T	p.C852F	TTTTCTGTGACTT	.	PASS	Atlas-SNP
GABRD	2563	hgsc.bcm.edu	37	1	1961467	1961467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	112	2	122	0	0.0178571	0	.	.	none	GABRD,NS,malignant_melanoma,-1,1	GABRD	49	1	NM_000815	exon9	c.G1105A	p.G369S	GCTGCCGGCGTCA	.	scavenged	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	37	5	140215022	140215022	+	Missense_Mutation	SNP	C	C	A	rs150063888	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	457	7	328	6	0.0153173	0.0182927	.	.	alt	PCDHA7,shoulder,malignant_melanoma,0,1	PCDHA7	367	1	NM_031852	exon1	c.C1054A	p.L352I	TTGACTCTCACTT	.	scavenged	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	37	5	7709382	7709382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	72	32	87	0	0.444444	0	.	.	none	.	ADCY2	337	.	NM_020546	exon10	c.A1460C	p.K487T	GAGCCAAAATGAG	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61845008	61845008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90	4	99	0	0.0444444	0	.	.	none	.	ANK3	703	.	NM_001204404	exon32	c.G3755A	p.G1252D	GAAGTGCCCCCTG	.	PASS	Atlas-SNP
CHST11	50515	hgsc.bcm.edu	37	12	105150950	105150950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154	64	135	0	0.415584	0	.	.	none	.	CHST11	54	.	NM_018413	exon3	c.A428C	p.K143T	GGGGGAAGTACAG	.	PASS	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	37	21	35258754	35258754	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	120	2	142	0	0.0166667	0	.	.	none	ITSN1,colon,carcinoma,+2,1	ITSN1	166	1	NM_003024	exon39	c.C5007T	p.F1669F	CCAGTTCTCACCA	.	scavenged	Atlas-SNP
TSPAN2	10100	hgsc.bcm.edu	37	1	115604799	115604799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	275	4	308	0	0.0145455	0	.	.	none	TSPAN2,NS,carcinoma,+1,1	TSPAN2	37	1	NM_005725	exon3	c.G227A	p.G76E	CAGCACCCGAAGA	.	scavenged	Atlas-SNP
ANXA7	310	hgsc.bcm.edu	37	10	75139679	75139679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	197	4	216	1	0.0203046	0.00462963	.	.	none	ANXA7,colon,carcinoma,0,1	ANXA7	50	1	NM_004034	exon12	c.C1189T	p.R397C	ACTCACGGCTCAC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	rs201206859		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	106	5	76	2	0.0471698	0.0263158	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	scavenged	Atlas-SNP
TBC1D23	55773	hgsc.bcm.edu	37	3	100039768	100039768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	85	28	76	0	0.329412	0	.	.	none	.	TBC1D23	133	.	NM_001199198	exon18	c.G1971C	p.K657N	CTTCAAGTATGGA	.	PASS	Atlas-SNP
RGS6	9628	hgsc.bcm.edu	37	14	72976974	72976974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90	31	78	0	0.344444	0	.	.	none	.	RGS6	92	.	NM_001204424	exon14	c.T1078C	p.S360P	TTCAGTTCAGAAA	.	PASS	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228882763	228882763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	159	68	201	1	0.427673	0.00497512	.	.	none	SPHKAP_ENST00000392056,NS,carcinoma,0,2	SPHKAP	750	2	NM_030623	exon7	c.C2807T	p.T936M	ACGACCGTGTCTG	.	scavenged	Atlas-SNP
EEF1B2	1933	hgsc.bcm.edu	37	2	207024768	207024768	+	Missense_Mutation	SNP	A	A	G	rs11546380		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	110	5	163	2	0.0454545	0.0122699	.	.	weak	EEF1B2,colon,carcinoma,-1,1	EEF1B2	58	1	NM_021121	exon2	c.A65G	p.K22R	CGGACAAGAGCTA	.	scavenged	Atlas-SNP
YIPF7	285525	hgsc.bcm.edu	37	4	44652108	44652108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	101	45	118	0	0.445545	0	.	.	none	.	YIPF7	33	.	NM_182592	exon2	c.T82G	p.L28V	GTGCCAAGTTTGA	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678405	100678405	+	Silent	SNP	T	T	C	rs4729648	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	151	44	116	17	0.291391	0.146552	T|0.936;C|0.064	0.064	strong	MUC17,caecum,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.T3708C	p.A1236A	TGAGGCTAGCACC	.	scavenged	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	37	5	56189428	56189428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169	2	208	0	0.0118343	0	.	.	none	MAP3K1,colon,carcinoma,+1,1	MAP3K1	355	1	NM_005921	exon20	c.G4460A	p.R1487H	CTCTTCGTTGTTT	.	scavenged	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35847205	35847205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	33	122	1	0.257812	0.00819672	.	.	none	ZMYM4,NS,carcinoma,-1,1	ZMYM4	143	1	NM_005095	exon9	c.T1415G	p.F472C	CCTGCTTCTCTAA	.	scavenged	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	41446993	41446993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	52	114	0	0.40625	0	.	.	none	DSCAM,NS,carcinoma,-1,1	DSCAM	347	1	NM_001271534	exon27	c.G4859A	p.R1620Q	TCCCGCCGCCTCC	.	PASS	Atlas-SNP
LEPREL1	55214	hgsc.bcm.edu	37	3	189675751	189675751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	205	4	185	0	0.0195122	0	.	.	none	LEPREL1,NS,carcinoma,0,1	LEPREL1	95	1	NM_018192	exon15	c.G2077A	p.E693K	GCTGTTCTTGATC	.	scavenged	Atlas-SNP
PCDHGB2	56103	hgsc.bcm.edu	37	5	140741034	140741034	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	145	92	158	0	0.634483	0	.	.	none	.	PCDHGB2	196	.	NM_018923	exon1	c.C1332T	p.D444D	CTCCGACGTCAAC	.	PASS	Atlas-SNP
CHKA	1119	hgsc.bcm.edu	37	11	67833918	67833918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	164	57	133	0	0.347561	0	.	.	none	.	CHKA	41	.	NM_001277	exon8	c.G994A	p.E332K	TGTATTCGAAATC	.	PASS	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	37	1	115276720	115276720	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	34	16	44	0	0.470588	0	.	.	none	.	CSDE1	145	.	NM_001242891	exon9	c.G739T	p.E247X	CTCTTTCAATAAA	.	PASS	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4199791	4199791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	150	64	144	0	0.426667	0	.	.	none	.	OTOP1	118	.	NM_177998	exon5	c.C770T	p.P257L	AGAGTTGGGGGCG	.	PASS	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	37	13	93879793	93879793	+	Silent	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66	26	86	0	0.393939	0	.	.	none	.	GPC6	102	.	NM_005708	exon1	c.G84T	p.R28R	GGCTCGGAGCTGC	.	PASS	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386301	7386301	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	132	11	141	2	0.0833333	0.0141844	.	.	none	POLR2A_ENST00000412468,NS,carcinoma,0,1	.	.	1	NM_001102614	exon2	c.A998C	p.E333A	AGAGGGAAGGGAA	.	scavenged	Atlas-SNP
BMP5	653	hgsc.bcm.edu	37	6	55739470	55739470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	146	31	116	0	0.212329	0	.	.	none	.	BMP5	94	.	NM_021073	exon1	c.C194A	p.P65H	GGTCTGGGTCTGT	.	PASS	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	37	19	10748564	10748564	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	237	114	274	0	0.481013	0	.	.	none	.	SLC44A2	56	.	NM_020428	exon18	c.G1728A	p.S576S	CACCTCGGCCAGG	.	PASS	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	37	22	45970519	45970519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	46	4	76	0	0.0869565	0	.	.	none	.	FBLN1	143	.	NM_006486	exon15	c.T1826C	p.F609S	GCGAGTTCACCCG	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112173494	112173494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	76	23	91	0	0.302632	0	.	.	none	APC,NS,carcinoma,-2,1	APC	4158	1	NM_001127510	exon17	c.G2203A	p.A735T	AGGCCTGCGAAGT	.	PASS	Atlas-SNP
PGPEP1L	145814	hgsc.bcm.edu	37	15	99511839	99511839	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	178	47	137	0	0.264045	0	.	.	none	PGPEP1L,NS,carcinoma,-1,1	PGPEP1L	26	1	NM_001102612	exon5	c.G459A	p.G153G	CGGGAGCCCGCGC	.	PASS	Atlas-SNP
OR4C46	119749	hgsc.bcm.edu	37	11	51516008	51516008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	199	77	238	0	0.386935	0	.	.	none	.	OR4C46	96	.	NM_001004703	exon1	c.A727G	p.T243A	CACATCACGGTTG	.	PASS	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	37	17	71346425	71346425	+	Missense_Mutation	SNP	G	G	A	rs369870973		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	69	2	98	0	0.0289855	0	.	.	weak	SDK2,acral,malignant_melanoma,+1,1	SDK2	219	1	NM_001144952	exon43	c.C5989T	p.R1997W	AGAGCCGCCTGTT	.	scavenged	Atlas-SNP
ZNF587	84914	hgsc.bcm.edu	37	19	58371258	58371258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	310	4	375	0	0.0129032	0	.	.	none	ZNF587,NS,carcinoma,-1,1	ZNF587	53	1	NM_032828	exon3	c.A1478G	p.E493G	CGTATGAATGCAG	.	scavenged	Atlas-SNP
CDC6	990	hgsc.bcm.edu	37	17	38457274	38457274	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	168	2	174	0	0.0119048	0	.	.	none	CDC6,NS,carcinoma,-2,1	CDC6	53	1	NM_001254	exon10	c.C1444T	p.L482L	GTCACTCTGGGGA	.	scavenged	Atlas-SNP
ZNF436	80818	hgsc.bcm.edu	37	1	23689381	23689381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	222	91	249	1	0.40991	0.00401606	.	.	none	.	ZNF436	49	.	NM_001077195	exon4	c.C494A	p.P165H	TTATAGGGTCTGT	.	PASS	Atlas-SNP
HN1	51155	hgsc.bcm.edu	37	17	73132201	73132201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	49	172	0	0.382812	0	.	.	none	.	HN1	17	.	NM_016185	exon5	c.G461A	p.G154D	AGCTAACCCAAGA	.	PASS	Atlas-SNP
COX2	5743	hgsc.bcm.edu	37	MT	7818	7818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	15	14	5	0	0.933333	0	.	.	none	.	.	.	.	ENST00000361739	exon1	c.T233C	p.L78P	TCGCCCTCCCATC	.	PASS	Atlas-SNP
KRTAP5-3	387266	hgsc.bcm.edu	37	11	1629156	1629156	+	Missense_Mutation	SNP	T	T	A	rs75371407		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	184	3	198	2	0.0163043	0.010101	T|0.500;A|0.500	0.500	weak	KRTAP5-3,NS,carcinoma,+2,1	KRTAP5-3	33	1	NM_001012708	exon1	c.A460T	p.S154C	AGCAGCTGGGCTT	.	scavenged	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	37	6	41166098	41166098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	111	5	83	0	0.045045	0	.	.	none	TREML2,colon,carcinoma,0,1	TREML2	41	1	NM_024807	exon2	c.C125T	p.S42F	TTATAGGAGCACT	.	scavenged	Atlas-SNP
C11orf86	254439	hgsc.bcm.edu	37	11	66743072	66743072	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	63	33	61	0	0.52381	0	.	.	none	.	C11orf86	7	.	NM_001136485	exon1	c.G239C	p.R80P	CCCAGCGAAGAGG	.	PASS	Atlas-SNP
MEX3A	92312	hgsc.bcm.edu	37	1	156047300	156047300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108	7	140	0	0.0648148	0	.	.	none	.	MEX3A	33	.	NM_001093725	exon2	c.T628C	p.S210P	CGCCTGACTTGTT	.	PASS	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	37	11	726366	726366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154	67	125	0	0.435065	0	.	.	none	.	EPS8L2	42	.	NM_022772	exon19	c.G1816A	p.A606T	ATCAGGGCGCAGC	.	PASS	Atlas-SNP
GOLGA6L1	283767	hgsc.bcm.edu	37	15	22743249	22743249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	25	4	36	0	0.16	0	.	.	none	GOLGA6L1,caecum,carcinoma,0,1	GOLGA6L1	20	1	NM_001001413	exon8	c.T1634A	p.M545K	AGGAGATGATGCA	.	scavenged	Atlas-SNP
SLC35E3	55508	hgsc.bcm.edu	37	12	69140524	69140524	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	86	4	92	0	0.0465116	0	.	.	none	.	SLC35E3	23	.	NM_018656	exon1	c.C367T	p.Q123X	TGCTACCAGAAAA	.	PASS	Atlas-SNP
TOX2	84969	hgsc.bcm.edu	37	20	42679965	42679965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	170	3	254	0	0.0176471	0	.	.	none	TOX2_ENST00000348077,NS,carcinoma,-1,4	TOX2	158	4	NM_001098798	exon4	c.C458T	p.S153L	TCCACTCGGAAGT	.	scavenged	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	37	5	102465357	102465357	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	40	4	39	0	0.1	0	.	.	none	.	PPIP5K2	98	.	NM_015216	exon1	c.C64T	p.R22X	AATTATCGACATT	.	PASS	Atlas-SNP
THOC7	80145	hgsc.bcm.edu	37	3	63824125	63824125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	263	74	264	0	0.281369	0	.	.	none	.	THOC7	24	.	NM_025075	exon3	c.C188T	p.S63L	CCCATTGAAAATT	.	PASS	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	37	2	234581002	234581002	+	Missense_Mutation	SNP	C	C	G	rs76167146	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	115	10	117	3	0.0869565	0.025641	C|0.943;G|0.057	0.057	strong	UGT1A9,NS,carcinoma,0,1	UGT1A9	79	1	NM_021027	exon1	c.C422G	p.S141C	AGAGTTCTTTTGA	.	scavenged	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178552090	178552090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	3	163	1	0.0234375	0.00613497	.	.	none	ADAMTS2,caecum,carcinoma,0,2	ADAMTS2	190	2	NM_014244	exon19	c.G2842A	p.D948N	TGTTGTCGTGTAG	.	scavenged	Atlas-SNP
TUFM	7284	hgsc.bcm.edu	37	16	28856096	28856096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	114	2	135	0	0.0175439	0	.	.	none	TUFM,NS,carcinoma,+1,1	TUFM	33	1	NM_003321	exon5	c.C607T	p.R203W	GCTCCCGGATCTC	.	scavenged	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	37	11	61495668	61495668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94	37	126	0	0.393617	0	.	.	none	.	DAGLA	109	.	NM_006133	exon7	c.G680A	p.R227Q	TCTTCCGGGACCT	.	PASS	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35847247	35847247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163	33	166	0	0.202454	0	.	.	none	.	ZMYM4	143	.	NM_005095	exon9	c.G1457T	p.C486F	ACTGTTGTGAGAA	.	PASS	Atlas-SNP
MPRIP	23164	hgsc.bcm.edu	37	17	17078669	17078669	+	Silent	SNP	C	C	T	rs369573954		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	194	3	208	0	0.0154639	0	.	.	weak	MPRIP,NS,carcinoma,0,1	MPRIP	87	1	NM_015134	exon19	c.C2652T	p.G884G	GGACGGCGGTGGG	.	scavenged	Atlas-SNP
CCDC138	165055	hgsc.bcm.edu	37	2	109463198	109463198	+	Missense_Mutation	SNP	C	C	T	rs367747465	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	191	3	191	0	0.0157068	0	.	.	alt	CCDC138,rectum,carcinoma,0,1	CCDC138	49	1	NM_144978	exon12	c.C1328T	p.S443L	AGCACTCGACTAT	.	scavenged	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170627775	170627775	+	Missense_Mutation	SNP	C	C	G	rs6934830	byfrequency;by2hit2allele;byhapmap	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127	4	93	2	0.0314961	0.0215054	C|0.712;G|0.288	0.288	strong	FAM120B,colon,carcinoma,0,1	FAM120B	108	1	NM_032448	exon2	c.C1297G	p.P433A	TCTGAACCCAGGC	.	scavenged	Atlas-SNP
C10orf68	79741	hgsc.bcm.edu	37	10	33135314	33135314	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	179	2	196	0	0.0111732	0	.	.	none	C10orf68,NS,carcinoma,0,1	C10orf68	75	1	NM_024688	exon17	c.A1344G	p.K448K	TGATAAAGAACTC	.	scavenged	Atlas-SNP
OR2M2	391194	hgsc.bcm.edu	37	1	248344182	248344182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137	93	295	0	0.678832	0	.	.	none	.	OR2M2	149	.	NM_001004688	exon1	c.A895G	p.R299G	GTGACTAGAGCAT	.	PASS	Atlas-SNP
FOXB2	442425	hgsc.bcm.edu	37	9	79634683	79634683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	126	3	186	1	0.0238095	0.00537634	.	.	none	LOC442425,colon,carcinoma,+1,3	FOXB2	71	3	NM_001013735	exon1	c.A113G	p.D38G	TGAGCGACATCTA	.	scavenged	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	37	6	132938981	132938981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	98	25	88	0	0.255102	0	.	.	none	.	TAAR2	45	.	NM_001033080	exon2	c.T364G	p.F122V	GGTCAAAACTATA	.	PASS	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	37	12	13716441	13716441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	64	20	75	0	0.3125	0	.	.	none	.	GRIN2B	303	.	NM_000834	exon13	c.C3731T	p.A1244V	TTGCAAGCCTCAC	.	PASS	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	37	1	115487569	115487569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	120	42	137	0	0.35	0	.	.	none	.	SYCP1	149	.	NM_003176	exon25	c.T2120G	p.I707R	ATAAAATAGCTGA	.	PASS	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3129287	3129287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	226	92	238	0	0.40708	0	.	.	none	.	HTT	221	.	NM_002111	exon12	c.G1699A	p.E567K	ACCACCGAAGGGC	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49415920	49415920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	49	16	81	0	0.326531	0	.	.	none	.	MLL2	1173	.	NM_003482	exon53	c.C16427A	p.S5476Y	GCACAGGAATGGT	.	PASS	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	37	2	213872764	213872764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	110	41	116	0	0.372727	0	.	.	none	IKZF2,NS,carcinoma,+2,1	IKZF2	71	1	NM_016260	exon8	c.A901G	p.M301V	AGTTCATATCAAA	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852211	97852211	+	Missense_Mutation	SNP	G	G	A	rs72926074	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	204	11	268	0	0.0539216	0	G|0.981;A|0.019	0.019	strong	.	OR5H1	71	.	NM_001005338	exon1	c.G670A	p.A224T	CTCTTCGCAATCT	.	PASS	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	37	2	27163001	27163001	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	65	20	58	0	0.307692	0	.	.	none	.	DPYSL5	69	.	NM_001253724	exon9	c.C1050T	p.G350G	GAGTGGCGTGCAG	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17085373	17085373	+	Missense_Mutation	SNP	C	C	T	rs2092130	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	509	17	507	17	0.0333988	0.0335306	C|1.000;|0.000	.	weak	Q13209_HUMAN,NS,carcinoma,0,6	.	.	6	NM_001271733	exon10	c.G1318A	p.G440R	TATCCCCATCTGG	.	scavenged	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49723296	49723296	+	Missense_Mutation	SNP	G	G	A	rs80308386	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	112	10	119	0	0.0892857	0	G|0.375;A|0.625	0.625	strong	MST1,trunk,malignant_melanoma,0,3	MST1	84	3	NM_020998	exon10	c.C1247T	p.P416L	CACTGCGGCTTGT	.	scavenged	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	37	13	39587314	39587314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	107	2	100	1	0.0186916	0.01	.	.	none	C13orf23,NS,carcinoma,0,1	.	.	1	NM_025138	exon11	c.C2075T	p.P692L	AATACTGGTGCAA	.	scavenged	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39263849	39263849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	76	2	80	0	0.0263158	0	.	.	none	FREM2,arm,malignant_melanoma,0,1	FREM2	385	1	NM_207361	exon1	c.G2368A	p.G790S	CCCCCGGGTCAAG	.	scavenged	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	37	19	57325440	57325440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	284	3	291	0	0.0105634	0	.	.	none	ZIM2_ENST00000326441,rectum,carcinoma,0,2	PEG3	414	2	NM_001146184	exon9	c.G4370A	p.G1457D	TCAATACCTGCAC	.	scavenged	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	37	2	95953995	95953995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	68	3	79	0	0.0441176	0	.	.	none	PROM2,NS,carcinoma,-1,1	PROM2	78	1	NM_001165977	exon21	c.G2281A	p.G761R	CTCTCCGGAGCCC	.	scavenged	Atlas-SNP
MARCH7	64844	hgsc.bcm.edu	37	2	160599591	160599591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	143	62	147	0	0.433566	0	.	.	none	.	MARCH7	48	.	NM_022826	exon3	c.C173G	p.S58C	CAGCATCTGCGTC	.	PASS	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	37	2	85577909	85577909	+	Silent	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	124	46	140	0	0.370968	0	.	.	none	.	RETSAT	56	.	NM_017750	exon3	c.G591T	p.L197L	CTTAACCAGCTTT	.	PASS	Atlas-SNP
SAMHD1	25939	hgsc.bcm.edu	37	20	35559188	35559188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	91	44	114	0	0.483516	0	.	.	none	.	SAMHD1	62	.	NM_015474	exon5	c.G600T	p.Q200H	AGCAATCTGAACA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515065	195515065	+	Missense_Mutation	SNP	G	G	T	rs74695299	bycluster;alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	119	7	72	8	0.0588235	0.111111	G|0.500;A|0.500	.	alt	MUC4_ENST00000463781,NS,carcinoma,0,5	MUC4	1505	5	NM_018406	exon2	c.C3386A	p.A1129E	GTGGATGCTGAGG	.	scavenged	Atlas-SNP
SERPINB2	5055	hgsc.bcm.edu	37	18	61562516	61562516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	182	35	125	0	0.192308	0	.	.	none	.	SERPINB2	63	.	NM_002575	exon3	c.G187T	p.V63L	AATGAAGTGGGAG	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6646497	6646497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	52	25	77	0	0.480769	0	.	.	none	.	DCHS1	277	.	NM_003737	exon19	c.G7078A	p.A2360T	GGTTGGCACGGCC	.	PASS	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	37	6	46658993	46658993	+	Missense_Mutation	SNP	A	A	C	rs138212613	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127	38	95	1	0.299213	0.0105263	A|1.000;G|0.000	.	alt	TDRD6,NS,carcinoma,0,1	TDRD6	205	1	NM_001168359	exon1	c.A3128C	p.K1043T	TTGCCAAGTATAC	.	scavenged	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	37	6	158504550	158504550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	92	29	77	0	0.315217	0	.	.	none	.	SYNJ2	111	.	NM_003898	exon21	c.G2955A	p.M985I	CAGCATGGCCCCC	.	PASS	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	37	3	197894668	197894668	+	Missense_Mutation	SNP	G	G	A	rs200450190		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	1020	11	935	6	0.0107843	0.00641711	.	.	weak	FAM157A,NS,malignant_melanoma,0,1	FAM157A	4	1	NM_001145248	exon5	c.G1010A	p.R337K	CGCTGAGGTGCCA	.	scavenged	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	37	19	13915887	13915887	+	Missense_Mutation	SNP	A	A	C	rs199644245	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39	16	24	0	0.410256	0	A|1.000;C|0.000	0.000	strong	.	ZSWIM4	69	.	NM_023072	exon3	c.A637C	p.T213P	CATCACACTGAGG	.	PASS	Atlas-SNP
ALG10	84920	hgsc.bcm.edu	37	12	34179242	34179242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	292	111	343	0	0.380137	0	.	.	none	.	ALG10	53	.	NM_032834	exon3	c.G814A	p.G272S	GTTAATGGTGGAA	.	PASS	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50746166	50746166	+	Silent	SNP	G	G	C	rs368983791		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	253	5	301	2	0.0197628	0.00664452	.	.	weak	FAM186A_ENST00000327337,NS,carcinoma,0,3	FAM186A	181	3	NM_001145475	exon4	c.C4449G	p.L1483L	AGGGATGAGAGGG	.	scavenged	Atlas-SNP
ZMPSTE24	10269	hgsc.bcm.edu	37	1	40751632	40751632	+	Silent	SNP	C	C	T	rs116284141	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163	4	204	0	0.0245399	0	C|0.995;T|0.005	0.005	strong	ZMPSTE24,NS,carcinoma,+2,1	ZMPSTE24	50	1	NM_005857	exon8	c.C990T	p.L330L	GGTACTCGCTGTA	.	scavenged	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	37	14	88951488	88951488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	89	34	138	0	0.382022	0	.	.	none	.	PTPN21	113	.	NM_007039	exon12	c.A1010G	p.Y337C	ATCACGTAGGGCT	.	PASS	Atlas-SNP
BMP10	27302	hgsc.bcm.edu	37	2	69093241	69093241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	226	3	257	0	0.0132743	0	.	.	none	BMP10,NS,carcinoma,+1,1	BMP10	70	1	NM_014482	exon2	c.G797A	p.R266K	TCCTTCCTCTCCT	.	scavenged	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	37	X	128709154	128709154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	105	86	136	1	0.819048	0.00735294	.	.	none	.	OCRL	117	.	NM_000276	exon16	c.T1640G	p.F547C	AAGTCTTTGAAGA	.	PASS	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11509616	11509616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	85	28	79	0	0.329412	0	.	.	none	THSD7A,mouth,carcinoma,+1,1	THSD7A	219	1	NM_015204	exon9	c.C2258A	p.P753H	CTTTCAGGACATC	.	PASS	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	37	1	223567883	223567883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60	2	79	0	0.0333333	0	.	.	none	C1orf65,rectum,carcinoma,-1,1	C1orf65	71	1	NM_152610	exon1	c.C1066T	p.P356S	GAGAGCCCGCGCC	.	scavenged	Atlas-SNP
PCMTD1	115294	hgsc.bcm.edu	37	8	52733101	52733101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	265	4	327	0	0.0150943	0	.	.	none	PCMTD1,extremity,malignant_melanoma,-1,3	PCMTD1	73	3	NM_052937	exon6	c.T884C	p.L295P	GGAATAAGCTGAT	.	scavenged	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	37	X	118797638	118797638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	50	32	107	0	0.64	0	.	.	none	.	SEPT6	53	.	NM_145802	exon3	c.G148T	p.E50X	CTGTCTCTCCTGA	.	PASS	Atlas-SNP
OR5H15	403274	hgsc.bcm.edu	37	3	97888289	97888289	+	Missense_Mutation	SNP	G	G	C	rs140807945		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	292	23	209	0	0.0787671	0	G|0.999;C|0.001	0.001	weak	OR5H15,colon,carcinoma,0,2	OR5H15	70	2	NM_001005515	exon1	c.G746C	p.C249S	CTGTCTGTTTATA	.	PASS	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	37	9	16436244	16436244	+	Missense_Mutation	SNP	C	C	T	rs138108118	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	125	2	145	0	0.016	0	C|1.000;T|0.000	0.000	weak	BNC2,NS,carcinoma,+1,1	BNC2	166	1	NM_017637	exon6	c.G1948A	p.A650T	CATCGGCGGTATC	.	scavenged	Atlas-SNP
COL8A1	1295	hgsc.bcm.edu	37	3	99514003	99514003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	31	43	0	0.402597	0	.	.	none	.	COL8A1	68	.	NM_001850	exon5	c.G1258A	p.G420R	ATTGTAGGGCCAC	.	PASS	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	37	19	39948337	39948337	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	179	72	160	0	0.402235	0	.	.	none	.	SUPT5H	119	.	NM_001130825	exon4	c.C264T	p.D88D	TGAGGACGAGGAC	.	PASS	Atlas-SNP
MX1	4599	hgsc.bcm.edu	37	21	42817373	42817373	+	Splice_Site	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60	21	74	0	0.35	0	.	.	none	.	MX1	58	.	NM_001144925	exon14	c.1009-2A>G	.	TTCCTCAGAAATC	.	PASS	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100866137	100866137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	106	2	126	0	0.0188679	0	.	.	none	VPS13B_ENST00000357162,NS,carcinoma,-1,4	VPS13B	811	4	NM_017890	exon56	c.A10595G	p.Y3532C	GGTTATACGTGGA	.	scavenged	Atlas-SNP
KCNA1	3736	hgsc.bcm.edu	37	12	5020724	5020724	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	142	3	195	0	0.0211268	0	.	.	none	KCNA1,right_lower_lobe,carcinoma,+1,1	KCNA1	112	1	NM_000217	exon2	c.C180T	p.N60N	CCCCAACACGCTG	.	scavenged	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	37	15	63935174	63935174	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	199	3	197	0	0.0150754	0	.	.	none	HERC1_ENST00000443617,colon,carcinoma,-1,2	HERC1	624	2	NM_003922	exon59	c.T11415C	p.A3805A	TGAGCAAGCAGCT	.	scavenged	Atlas-SNP
ANKRD29	147463	hgsc.bcm.edu	37	18	21197729	21197729	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	177	28	85	0	0.158192	0	.	.	none	.	ANKRD29	24	.	NM_173505	exon8	c.G690A	p.L230L	TTTAAGCAACTCT	.	PASS	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	37	3	193051546	193051546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	112	29	80	0	0.258929	0	.	.	none	.	ATP13A5	171	.	NM_198505	exon11	c.A1265G	p.Y422C	CCATGGTACATAT	.	PASS	Atlas-SNP
NFIB	4781	hgsc.bcm.edu	37	9	14307015	14307015	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	140	44	172	0	0.314286	0	.	.	none	.	NFIB	91	.	NM_001190738	exon2	c.T613G	p.F205V	CCAAAAACAAATC	.	PASS	Atlas-SNP
ACOX1	51	hgsc.bcm.edu	37	17	73944495	73944495	+	Missense_Mutation	SNP	C	C	T	rs369561903		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58	3	74	0	0.0517241	0	.	.	weak	ACOX1_ENST00000301608,caecum,carcinoma,-1,2	ACOX1	85	2	NM_007292	exon13	c.G1772A	p.R591H	TTTACACGCTGGT	.	scavenged	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	37	2	198270084	198270084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	125	2	157	1	0.016	0.00636943	.	.	none	SF3B1,NS,carcinoma,0,1	SF3B1	1038	1	NM_012433	exon10	c.G1352A	p.R451Q	ATAGTTCGATCTT	.	scavenged	Atlas-SNP
PLCH2	9651	hgsc.bcm.edu	37	1	2419084	2419084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	173	5	221	0	0.0289017	0	.	.	none	PLCH2_ENST00000378486,NS,carcinoma,-2,2	PLCH2	131	2	NM_014638	exon8	c.T1162C	p.Y388H	CATGGCTACACTC	.	scavenged	Atlas-SNP
GULP1	51454	hgsc.bcm.edu	37	2	189405948	189405948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	96	39	135	0	0.40625	0	.	.	none	.	GULP1	35	.	NM_016315	exon7	c.G302A	p.C101Y	CTTTTTGTGCAGA	.	PASS	Atlas-SNP
FBXW10	10517	hgsc.bcm.edu	37	17	18653098	18653098	+	Missense_Mutation	SNP	G	G	C	rs3809727	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	295	5	341	0	0.0169492	0	G|0.750;C|0.250	0.250	weak	FBXW10,NS,carcinoma,0,6	FBXW10	82	6	NM_001267585	exon3	c.G734C	p.G245A	GAAAAGGAGACAT	.	scavenged	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	37	8	101727716	101727716	+	Missense_Mutation	SNP	C	C	T	rs201157005	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	88	3	102	2	0.0340909	0.0196078	C|0.940;T|0.060	0.060	strong	PABPC1,NS,carcinoma,-1,1	PABPC1	76	1	NM_002568	exon4	c.G617A	p.R206H	TTAAGGCGCTCAT	.	scavenged	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72343485	72343485	+	Silent	SNP	G	G	A	rs368077796		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	117	2	59	0	0.017094	0	.	.	weak	ZNF407_ENST00000582337,NS,carcinoma,0,2	ZNF407	231	2	NM_001146190	exon1	c.G510A	p.P170P	CCCCCCGAAAGAA	.	scavenged	Atlas-SNP
ARPP21	10777	hgsc.bcm.edu	37	3	35758809	35758809	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	120	37	130	0	0.308333	0	.	.	none	.	ARPP21	153	.	NM_016300	exon13	c.A955T	p.N319Y	GACAGTAACATAT	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141079638	141079638	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127	54	166	0	0.425197	0	.	.	none	.	LRP1B	1315	.	NM_018557	exon82	c.T12534C	p.D4178D	TGCTAAATCCAAG	.	PASS	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	37	5	54641000	54641000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	143	4	179	0	0.027972	0	.	.	none	SKIV2L2,NS,carcinoma,-2,1	SKIV2L2	104	1	NM_015360	exon10	c.A1084G	p.K362E	GACCAGAAAGGGC	.	scavenged	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	37	4	8224646	8224646	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95	45	125	0	0.473684	0	.	.	none	.	SH3TC1	105	.	NM_018986	exon10	c.C1192T	p.Q398X	GCCAGGCAGTTGC	.	PASS	Atlas-SNP
SRBD1	55133	hgsc.bcm.edu	37	2	45620107	45620107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	125	2	100	0	0.016	0	.	.	none	SRBD1,NS,carcinoma,0,1	SRBD1	107	1	NM_018079	exon20	c.C2675T	p.P892L	CTTTCAGGCTGGC	.	scavenged	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167097477	167097477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	88	41	99	0	0.465909	0	.	.	none	.	DUSP27	235	.	NM_001080426	exon5	c.C3109T	p.P1037S	GAGAGCCCAGAGC	.	PASS	Atlas-SNP
SERPINB10	5273	hgsc.bcm.edu	37	18	61584747	61584747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	113	3	89	0	0.0265487	0	.	.	none	SERPINB10,colon,carcinoma,0,1	SERPINB10	53	1	NM_005024	exon2	c.A226G	p.R76G	AAAAAAAGGAAAA	.	scavenged	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	37	5	140784896	140784896	+	Missense_Mutation	SNP	G	G	A	rs371490086		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	207	3	197	0	0.0144928	0	.	.	weak	PCDHGA9_ENST00000573521,NS,carcinoma,0,2	PCDHGA9	110	2	NM_032089	exon1	c.G2377A	p.V793I	TTGTGCGTCTCTG	.	scavenged	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	37	13	24436455	24436455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133	48	212	0	0.360902	0	.	.	none	.	MIPEP	53	.	NM_005932	exon9	c.A1039G	p.N347D	GAGGATTCAGTTT	.	PASS	Atlas-SNP
ZNF691	51058	hgsc.bcm.edu	37	1	43317125	43317125	+	Missense_Mutation	SNP	C	C	T	rs201360083	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66	4	68	0	0.0606061	0	C|1.000;T|0.000	0.000	strong	.	ZNF691	30	.	NM_001242739	exon4	c.C589T	p.R197W	GGCAAGCGGCCAT	.	PASS	Atlas-SNP
EYA4	2070	hgsc.bcm.edu	37	6	133836535	133836535	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94	20	82	0	0.212766	0	.	.	none	EYA4_ENST00000355167,NS,carcinoma,+2,2	EYA4	196	2	NM_172105	exon17	c.A1578G	p.L526L	CTGGCTAACAAAT	.	PASS	Atlas-SNP
LURAP1L	286343	hgsc.bcm.edu	37	9	12775880	12775880	+	Missense_Mutation	SNP	T	T	G	rs201963967	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	5	3	11	0	0.6	0	.	.	weak	C9orf150,caecum,carcinoma,0,3	.	.	3	NM_203403	exon1	c.T166G	p.C56G	GGCGGCTGCAGTA	.	scavenged	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	37	1	200550342	200550342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	275	3	295	0	0.0109091	0	.	.	none	KIF14,NS,carcinoma,+1,1	KIF14	156	1	NM_014875	exon20	c.T3322C	p.Y1108H	AAACATAGTATGT	.	scavenged	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	37	3	126142198	126142198	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	145	42	154	0	0.289655	0	.	.	none	.	CCDC37	69	.	NM_182628	exon12	c.G1113A	p.E371E	GCAGGAGGACACC	.	PASS	Atlas-SNP
SP5	389058	hgsc.bcm.edu	37	2	171572940	171572940	+	Missense_Mutation	SNP	G	G	A	rs3749036	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	4	4	0	0	1	.	G|0.572;A|0.428	0.428	strong	.	SP5	14	.	NM_001003845	exon2	c.G223A	p.A75T	TGGACCGCCGACA	.	PASS	Atlas-SNP
P2RY8	286530	hgsc.bcm.edu	37	X	1584851	1584851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	48	35	87	0	0.729167	0	.	.	none	.	P2RY8	53	.	NM_178129	exon2	c.C601G	p.L201V	GGAACAGCAGGAT	.	PASS	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79080663	79080663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	153	2	120	0	0.0130719	0	.	.	none	ADAMTS7,NS,carcinoma,0,1	ADAMTS7	142	1	NM_014272	exon8	c.G1232A	p.R411Q	AAAGGTCGTTTCC	.	scavenged	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	37	17	6367558	6367558	+	Silent	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	25	140	0	0.324675	0	.	.	none	PITPNM3,colon,carcinoma,-1,1	PITPNM3	91	1	NM_031220	exon16	c.C2088G	p.R696R	TGTGATGCGACCA	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678407	100678407	+	Missense_Mutation	SNP	G	G	A	rs4729649	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	146	41	114	17	0.280822	0.149123	G|0.948;A|0.052	0.052	strong	MUC17,caecum,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.G3710A	p.S1237N	AGGCTAGCACCCT	.	scavenged	Atlas-SNP
GRK4	2868	hgsc.bcm.edu	37	4	2986265	2986265	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	244	4	269	1	0.0163934	0.00371747	.	.	none	GRK4_ENST00000398052,NS,carcinoma,+2,3	GRK4	72	3	NM_182982	exon2	c.T78C	p.R26R	TGGTCGTAGTAAA	.	scavenged	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	37	6	41166119	41166119	+	Missense_Mutation	SNP	T	T	C	rs76984414	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	104	5	89	0	0.0480769	0	.	.	weak	TREML2,colon,carcinoma,0,2	TREML2	41	2	NM_024807	exon2	c.A104G	p.E35G	AGAGTCTCCCCTT	.	scavenged	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237580416	237580416	+	Silent	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	63	22	65	0	0.349206	0	.	.	none	RYR2,NS,carcinoma,-1,2	RYR2	1273	2	NM_001035	exon11	c.A841C	p.R281R	ACGCTAAGAGTTG	.	PASS	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	37	2	26696112	26696112	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	214	3	217	0	0.0140187	0	.	.	none	OTOF_ENST00000361394,NS,carcinoma,-2,2	OTOF	524	2	NM_194248	exon29	c.G3621A	p.V1207V	GCAGTCCACCACA	.	scavenged	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	37	7	127992592	127992592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	87	23	51	0	0.264368	0	.	.	none	.	PRRT4	31	.	NM_001174164	exon6	c.C1018G	p.P340A	GCCTCGGCGCCTC	.	PASS	Atlas-SNP
ETS2	2114	hgsc.bcm.edu	37	21	40194761	40194761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	40	23	53	0	0.575	0	.	.	none	ETS2_ENST00000360214,caecum,carcinoma,-1,2	ETS2	87	2	NM_001256295	exon11	c.C1778T	p.T593M	GGTTCACGCCCGA	.	PASS	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	37	18	8825287	8825287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	91	2	60	0	0.021978	0	.	.	none	CCDC165,scalp,carcinoma,0,1	.	.	1	NM_015210	exon15	c.C3779T	p.P1260L	ATAGTCCCCTCTG	.	scavenged	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	37	4	89427002	89427002	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	173	68	207	0	0.393064	0	.	.	none	.	HERC5	114	.	NM_016323	exon23	c.C3048T	p.A1016A	AGAAGCCATCAAC	.	PASS	Atlas-SNP
ADORA1	134	hgsc.bcm.edu	37	1	203134499	203134499	+	Missense_Mutation	SNP	C	C	T	rs145647777	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	60	157	0	0.46875	0	C|1.000;T|0.000	0.000	strong	.	ADORA1	62	.	NM_001048230	exon3	c.C452T	p.A151V	TGAGTGCGGTGGA	.	PASS	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	37	16	76350339	76350339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	126	54	150	0	0.428571	0	.	.	none	.	CNTNAP4	600	.	NM_138994	exon2	c.T40G	p.L14V	TCTGCCTTGCCTC	.	PASS	Atlas-SNP
ARMCX5	64860	hgsc.bcm.edu	37	X	101858511	101858511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	78	4	166	0	0.0512821	0	.	.	none	.	ARMCX5	55	.	NM_022838	exon3	c.C1442T	p.P481L	TTGCACCCTTTAA	.	PASS	Atlas-SNP
ISOC2	79763	hgsc.bcm.edu	37	19	55966409	55966409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	249	3	276	0	0.0120482	0	.	.	none	ISOC2,colon,carcinoma,0,4	ISOC2	16	4	NM_024710	exon5	c.G532A	p.E178K	GCCCTTCGCTGGT	.	scavenged	Atlas-SNP
DRD5	1816	hgsc.bcm.edu	37	4	9784550	9784550	+	Silent	SNP	G	G	A	rs2227844	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	25	5	25	0	0.2	0	G|0.885;A|0.115	0.115	strong	DRD5,colon,carcinoma,0,2	DRD5	119	2	NM_000798	exon1	c.G897A	p.S299S	CCTGTCGGTGATC	.	scavenged	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	37	9	77473596	77473596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	73	46	199	0	0.630137	0	.	.	none	.	TRPM6	377	.	NM_017662	exon2	c.A102C	p.K34N	AGGATTTTTTGAG	.	PASS	Atlas-SNP
C8A	731	hgsc.bcm.edu	37	1	57378134	57378134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	140	3	156	0	0.0214286	0	.	.	none	C8A,NS,carcinoma,0,1	C8A	103	1	NM_000562	exon10	c.G1439T	p.R480L	CCAAGCGCCAGAA	.	scavenged	Atlas-SNP
CRTC3	64784	hgsc.bcm.edu	37	15	91172567	91172567	+	Missense_Mutation	SNP	G	G	A	rs140158187	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	250	70	169	0	0.28	0	G|0.996;A|0.004	0.004	strong	.	CRTC3	47	.	NM_022769	exon11	c.G1069A	p.A357T	CCCAACGCATCTG	.	PASS	Atlas-SNP
CLIP2	7461	hgsc.bcm.edu	37	7	73731906	73731906	+	Silent	SNP	C	C	T	rs148561130	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163	35	85	0	0.214724	0	C|0.968;T|0.032	0.032	strong	.	CLIP2	134	.	NM_032421	exon2	c.C30T	p.P10P	GCCCCCCGGCCGT	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	37	3	52398997	52398997	+	Missense_Mutation	SNP	G	G	A	rs377201322		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103	35	94	0	0.339806	0	.	.	weak	DNAH1_ENST00000420323,NS,carcinoma,0,4	DNAH1	534	4	NM_015512	exon34	c.G5480A	p.R1827H	CCATCCGCGAGGC	.	PASS	Atlas-SNP
OVGP1	5016	hgsc.bcm.edu	37	1	111957202	111957202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	124	2	171	0	0.016129	0	.	.	none	OVGP1_ENST00000369728,NS,adenocarcinoma,0,2	OVGP1	177	2	NM_002557	exon11	c.C1921A	p.R641S	CAAAGCGGTTGTC	.	scavenged	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	37	2	49247297	49247297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	152	3	174	0	0.0197368	0	.	.	none	FSHR,NS,carcinoma,-1,1	FSHR	164	1	NM_181446	exon3	c.A227G	p.E76G	GAGATCTCTCTGT	.	scavenged	Atlas-SNP
FKBP9	11328	hgsc.bcm.edu	37	7	33014908	33014908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	159	2	130	2	0.0125786	0.0153846	.	.	none	FKBP9,brain,glioma,0,9	FKBP9	335	9	NM_007270	exon3	c.G482A	p.R161Q	GCCCTCGGACCAT	.	scavenged	Atlas-SNP
RGL3	57139	hgsc.bcm.edu	37	19	11510960	11510960	+	Silent	SNP	G	G	T	rs201767762	bycluster;alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	145	2	107	0	0.0137931	0	.	.	alt	RGL3_ENST00000380456,colon,carcinoma,0,2	RGL3	100	2	NM_001035223	exon14	c.C1498A	p.R500R	TGACCCGGGAGAG	.	scavenged	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	37	11	102248352	102248352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	75	25	77	0	0.333333	0	.	.	none	.	BIRC2	51	.	NM_001256163	exon7	c.C1492G	p.Q498E	ATTAAACAAAAAA	.	PASS	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	37	1	108299925	108299925	+	Silent	SNP	C	C	T	rs17541972	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	158	4	179	0	0.0253165	0	C|0.996;T|0.004	0.004	strong	VAV3,NS,carcinoma,0,1	VAV3	176	1	NM_006113	exon11	c.G1044A	p.P348P	CTCAGTCGGATCA	.	scavenged	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	37	3	174814738	174814738	+	Missense_Mutation	SNP	G	G	A	rs9823911	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196	38	209	0	0.193878	0	G|0.642;A|0.358	0.358	strong	.	NAALADL2	86	.	NM_207015	exon2	c.G202A	p.G68S	CTAGACGGTGCTG	.	PASS	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002369	36002369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	55	5	55	2	0.0909091	0.0363636	.	.	none	DMKN_ENST00000424570,NS,carcinoma,0,3	DMKN	116	3	NM_001126058	exon5	c.G862A	p.G288S	TGCTGCCACCACT	.	scavenged	Atlas-SNP
C11orf68	83638	hgsc.bcm.edu	37	11	65685335	65685335	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95	2	83	0	0.0210526	0	.	.	none	C11orf68_ENST00000438576,colon,carcinoma,-1,2	C11orf68	15	2	NM_001135635	exon2	c.G477A	p.Q159Q	GGCGAGCTGGCGC	.	scavenged	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	37	18	14105585	14105585	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	86	4	49	0	0.0465116	0	.	.	none	ZNF519,NS,carcinoma,0,1	ZNF519	53	1	NM_145287	exon3	c.G954A	p.K318K	GAAAGGCTTCTCT	.	PASS	Atlas-SNP
G2E3	55632	hgsc.bcm.edu	37	14	31066658	31066658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206	59	183	0	0.286408	0	.	.	none	.	G2E3	82	.	NM_017769	exon7	c.T561G	p.F187L	TTTCTTTAGGTGT	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97851661	97851661	+	Missense_Mutation	SNP	G	G	T	rs200721525	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	823	10	676	4	0.0121507	0.00591716	G|0.982;T|0.018	0.018	strong	OR5H1,NS,carcinoma,0,7	OR5H1	71	7	NM_001005338	exon1	c.G120T	p.M40I	CATCATGGGGAAT	.	scavenged	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	37	15	90770838	90770838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	17	74	0	0.220779	0	.	.	none	.	SEMA4B	51	.	NM_020210	exon14	c.G1738A	p.A580T	TGCAGCGCGTCTT	.	PASS	Atlas-SNP
CBX6	23466	hgsc.bcm.edu	37	22	39263079	39263079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	30	10	26	0	0.333333	0	.	.	none	.	CBX6	26	.	NM_014292	exon5	c.G374A	p.R125H	TGGCAGCGGCGGA	.	PASS	Atlas-SNP
RFX4	5992	hgsc.bcm.edu	37	12	107103190	107103190	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	56	2	64	0	0.0357143	0	.	.	none	RFX4_ENST00000357881,NS,carcinoma,0,5	RFX4	218	5	NM_001206691	exon9	c.C943T	p.R315X	AACTTGCGAAACA	.	scavenged	Atlas-SNP
FAM60A	58516	hgsc.bcm.edu	37	12	31448253	31448253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	279	5	332	3	0.0179211	0.00903614	.	.	none	FAM60A,NS,carcinoma,-1,1	FAM60A	16	1	NM_021238	exon4	c.G143C	p.R48P	CCTGAACGAGTCT	.	scavenged	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	37	17	34912947	34912947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90	30	100	0	0.333333	0	.	.	none	.	GGNBP2	72	.	NM_024835	exon4	c.G199T	p.D67Y	CAACAGGATCTAA	.	PASS	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169632988	169632988	+	Silent	SNP	G	G	A	rs148676859	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	82	20	65	0	0.243902	0	G|1.000;A|0.000	0.000	weak	.	THBS2	230	.	NM_003247	exon12	c.C1776T	p.D592D	CACCTCGTCCAGG	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23908805	23908805	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	117	46	125	0	0.393162	0	.	.	none	.	SACS	871	.	NM_014363	exon10	c.T9210C	p.V3070V	GTTATAAACCAAG	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852220	97852220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211	19	255	0	0.0900474	0	.	.	none	.	OR5H1	71	.	NM_001005338	exon1	c.A679G	p.K227E	ATCTTAAAAAAGA	.	PASS	Atlas-SNP
ANKRD33	341405	hgsc.bcm.edu	37	12	52284881	52284881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	118	6	100	0	0.0508475	0	.	.	none	.	ANKRD33	33	.	NM_182608	exon5	c.T1151C	p.L384P	AGTGCCTTCAGTG	.	PASS	Atlas-SNP
ZBTB24	9841	hgsc.bcm.edu	37	6	109787112	109787112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	89	2	173	0	0.0224719	0	.	.	none	ZBTB24,colon,adenoma,+1,1	ZBTB24	64	1	NM_014797	exon7	c.C2036A	p.P679Q	GGTGGCGGACCAG	.	scavenged	Atlas-SNP
NCL	4691	hgsc.bcm.edu	37	2	232326352	232326352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	220	4	225	0	0.0181818	0	.	.	none	NCL,NS,carcinoma,-1,1	NCL	80	1	NM_005381	exon3	c.A512G	p.E171G	GCTGGTTCAATTT	.	scavenged	Atlas-SNP
ZBTB20	26137	hgsc.bcm.edu	37	3	114069130	114069130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	323	87	252	0	0.26935	0	.	.	none	.	ZBTB20	157	.	NM_001164342	exon4	c.G1795A	p.V599I	TGTGTACGAACAT	.	PASS	Atlas-SNP
CST11	140880	hgsc.bcm.edu	37	20	23433317	23433317	+	Silent	SNP	C	C	T	rs34604301	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	186	3	236	0	0.016129	0	C|0.991;T|0.009	0.009	strong	CST11,colon,carcinoma,0,1	CST11	27	1	NM_130794	exon1	c.G132A	p.A44A	GTCCTTCGCATAG	.	scavenged	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	37	14	47530650	47530650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	228	53	203	0	0.232456	0	.	.	none	.	MDGA2	470	.	NM_001113498	exon7	c.T1327G	p.F443V	TTTTAAACCAACT	.	PASS	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	37	3	64536662	64536662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	208	52	184	0	0.25	0	.	.	none	.	ADAMTS9	206	.	NM_182920	exon31	c.G4775T	p.G1592V	CGTGCCCCATGCA	.	PASS	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	37	11	4967768	4967768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	805	200	905	0	0.248447	0	.	.	none	.	OR51A4	73	.	NM_001005329	exon1	c.A563C	p.K188T	GCCAACTTCATGA	.	PASS	Atlas-SNP
TRDMT1	1787	hgsc.bcm.edu	37	10	17201224	17201224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	135	4	136	0	0.0296296	0	.	.	none	TRDMT1,colon,carcinoma,-1,4	TRDMT1	46	4	NM_004412	exon7	c.G464A	p.G155D	GGAATGCCAAGCT	.	scavenged	Atlas-SNP
PMS2	5395	hgsc.bcm.edu	37	7	6022454	6022454	+	Splice_Site	SNP	C	C	T	rs267608172		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	650	5	513	0	0.00769231	0	.	.	weak	PMS2,NS,lymphoid_neoplasm,0,1	PMS2	88	1	NM_000535	exon13	c.2174+1G>A	.	CACTCACGCTATG	.	scavenged	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	37	5	74655105	74655105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	64	30	84	0	0.46875	0	.	.	none	.	HMGCR	53	.	NM_000859	exon17	c.T2268G	p.I756M	AAACATTGTCACC	.	PASS	Atlas-SNP
KIAA1609	57707	hgsc.bcm.edu	37	16	84516214	84516214	+	Missense_Mutation	SNP	G	G	A	rs140439420	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	171	3	146	0	0.0175439	0	G|0.996;A|0.004	0.004	strong	KIAA1609,NS,carcinoma,0,1	KIAA1609	39	1	NM_020947	exon6	c.C1061T	p.T354M	GGGATCGTCTGCT	.	scavenged	Atlas-SNP
MICB	4277	hgsc.bcm.edu	37	6	31473513	31473513	+	Missense_Mutation	SNP	C	C	T	rs2240858	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137	3	133	1	0.0218978	0.0075188	C|0.500;T|0.500	0.500	weak	MICB,rectum,carcinoma,0,1	MICB	26	1	NM_005931	exon2	c.C190T	p.R64C	CAGAAACGCAGGG	.	scavenged	Atlas-SNP
LILRB3	11025	hgsc.bcm.edu	37	19	54725980	54725980	+	Silent	SNP	G	G	A	rs150024950	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	115	2	141	2	0.0173913	0.0141844	G|0.947;A|0.053	0.053	strong	LILRB3,NS,carcinoma,0,1	LILRB3	67	1	NM_006864	exon4	c.C378T	p.L126L	GGCTGAGAGGGTG	.	scavenged	Atlas-SNP
FAM149B1	317662	hgsc.bcm.edu	37	10	74953319	74953319	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	120	2	122	0	0.0166667	0	.	.	none	FAM149B1,NS,carcinoma,+2,1	FAM149B1	26	1	NM_173348	exon5	c.A510G	p.E170E	ATATGAAACAACC	.	scavenged	Atlas-SNP
NMUR1	10316	hgsc.bcm.edu	37	2	232389989	232389989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196	2	225	0	0.0102041	0	.	.	none	NMUR1,right_lower_lobe,carcinoma,+1,1	NMUR1	46	1	NM_006056	exon3	c.C1046T	p.S349L	GCCGCCGAGCCCA	.	scavenged	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	37	9	75355045	75355045	+	Missense_Mutation	SNP	A	A	C	rs377607548		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60	20	80	0	0.333333	0	.	.	weak	.	TMC1	87	.	NM_138691	exon9	c.A373C	p.K125Q	GCAAAAAAATTTG	.	PASS	Atlas-SNP
KLHL14	57565	hgsc.bcm.edu	37	18	30257201	30257201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	273	56	188	0	0.205128	0	.	.	none	.	KLHL14	92	.	NM_020805	exon8	c.A1681C	p.S561R	GGCCACTTCGACC	.	PASS	Atlas-SNP
MAGEB16	139604	hgsc.bcm.edu	37	X	35821008	35821008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	83	52	173	0	0.626506	0	.	.	none	.	MAGEB16	64	.	NM_001099921	exon2	c.C695T	p.T232M	ATTTGACGGGAGT	.	PASS	Atlas-SNP
NPTX2	4885	hgsc.bcm.edu	37	7	98257799	98257799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154	3	103	0	0.0194805	0	.	.	none	NPTX2,NS,carcinoma,+1,1	NPTX2	45	1	NM_002523	exon5	c.C1154T	p.A385V	TTCGCGCACAAGA	.	scavenged	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	37	1	10363223	10363223	+	Silent	SNP	C	C	T	rs151053483	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	242	12	286	0	0.0495868	0	C|0.999;T|0.001	0.001	strong	.	KIF1B	242	.	NM_183416	exon21	c.C1980T	p.D660D	AAAGGACGCGGAT	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126239318	126239318	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	78	33	98	0	0.423077	0	.	.	none	.	FAT4	1752	.	NM_024582	exon1	c.G1752A	p.Q584Q	TAGCCAGCCAGAA	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537700	88537700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	191	3	222	0	0.0157068	0	.	.	none	DSPP,NS,carcinoma,0,1	DSPP	174	1	NM_014208	exon5	c.C3886A	p.H1296N	AGTAACCACTCAA	.	scavenged	Atlas-SNP
TTC7A	57217	hgsc.bcm.edu	37	2	47249048	47249048	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	81	4	78	0	0.0493827	0	.	.	none	.	TTC7A	80	.	NM_020458	exon12	c.G1440A	p.E480E	CGGAGAGGAAGCC	.	PASS	Atlas-SNP
PSMC2	5701	hgsc.bcm.edu	37	7	103004631	103004631	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	161	2	149	0	0.0124224	0	.	.	none	PSMC2,rectum,carcinoma,0,1	PSMC2	38	1	NM_002803	exon8	c.C633T	p.G211G	CAAGGGCGTGCTG	.	scavenged	Atlas-SNP
MUT	4594	hgsc.bcm.edu	37	6	49423828	49423828	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	208	10	193	0	0.0480769	0	.	.	none	.	MUT	70	.	NM_000255	exon4	c.C876T	p.L292L	AGCCTGGAGTCCA	.	PASS	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	37	2	132021684	132021684	+	Missense_Mutation	SNP	C	C	A	rs28583670		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	380	7	420	3	0.0184211	0.00714286	.	.	weak	ENSG00000188219,NS,carcinoma,-1,1	.	.	1	NM_001083538	exon15	c.C2656A	p.P886T	GAACTGCCTGACT	.	scavenged	Atlas-SNP
CYSLTR1	10800	hgsc.bcm.edu	37	X	77529241	77529241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	89	63	222	0	0.707865	0	.	.	none	.	CYSLTR1	59	.	NM_006639	exon3	c.G3A	p.M1I	TTCATCCATGTTT	.	PASS	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	37	19	41066402	41066402	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94	40	123	0	0.425532	0	.	.	none	.	SPTBN4	213	.	NM_025213	exon10	c.G2036A	p.X679X	TGGAATGACAACA	.	PASS	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	37	14	24879175	24879175	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	181	2	131	0	0.0110497	0	.	.	none	NYNRIN,colon,carcinoma,0,1	NYNRIN	120	1	NM_025081	exon4	c.C2175T	p.P725P	GGGTCCCCAGTCC	.	scavenged	Atlas-SNP
TAX1BP1	8887	hgsc.bcm.edu	37	7	27831747	27831747	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196	4	144	2	0.0204082	0.0138889	.	.	none	TAX1BP1,rectum,carcinoma,0,2	TAX1BP1	71	2	NM_006024	exon9	c.G1161A	p.T387T	CAGAACGATGGCA	.	scavenged	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	37	4	143003328	143003328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	227	97	219	0	0.427313	0	.	.	none	.	INPP4B	132	.	NM_003866	exon26	c.A2498C	p.K833T	TTCAGTTTGCGGC	.	PASS	Atlas-SNP
CNDP2	55748	hgsc.bcm.edu	37	18	72167213	72167213	+	Missense_Mutation	SNP	C	C	T	rs140583961		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	215	3	131	0	0.0139535	0	C|1.000;T|0.000	0.000	weak	CNDP2,NS,carcinoma,0,1	CNDP2	55	1	NM_001168499	exon1	c.C5T	p.A2V	AGATGGCGGCCCT	.	scavenged	Atlas-SNP
POTEF	728378	hgsc.bcm.edu	37	2	130877892	130877892	+	Missense_Mutation	SNP	C	C	T	rs11889701	bycluster;byhapmap	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	287	11	339	29	0.0383275	0.0855457	C|0.500;T|0.500	0.500	weak	POTEF,NS,carcinoma,-1,12	POTEF	140	12	NM_001099771	exon3	c.G197A	p.R66H	CAGTGGCGGCACC	.	scavenged	Atlas-SNP
SCFD2	152579	hgsc.bcm.edu	37	4	54231638	54231638	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90	2	97	0	0.0222222	0	.	.	none	SCFD2,NS,carcinoma,-1,1	SCFD2	78	1	NM_152540	exon1	c.G471A	p.P157P	CAATAACGGGACA	.	scavenged	Atlas-SNP
SNRK	54861	hgsc.bcm.edu	37	3	43345043	43345043	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58	22	67	0	0.37931	0	.	.	none	.	SNRK	118	.	NM_017719	exon3	c.C348T	p.A116A	CTTGGCCAAGAAG	.	PASS	Atlas-SNP
NEFL	4747	hgsc.bcm.edu	37	8	24813297	24813297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	80	30	94	0	0.375	0	.	.	none	.	NEFL	47	.	NM_006158	exon1	c.G733A	p.V245M	TCTCCACGGAGAT	.	PASS	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	37	8	110451186	110451186	+	Missense_Mutation	SNP	C	C	T	rs202179223	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	135	2	158	0	0.0148148	0	C|1.000;T|0.000	0.000	strong	PKHD1L1,NS,carcinoma,-1,1	PKHD1L1	522	1	NM_177531	exon32	c.C3821T	p.A1274V	ACATGGCGGTGTA	.	scavenged	Atlas-SNP
OR2M3	127062	hgsc.bcm.edu	37	1	248366819	248366819	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	180	116	384	1	0.644444	0.00260417	.	.	none	.	OR2M3	116	.	NM_001004689	exon1	c.C450T	p.I150I	CTGGATCCTGGGC	.	PASS	Atlas-SNP
PPARG	5468	hgsc.bcm.edu	37	3	12475443	12475443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	287	61	217	0	0.212544	0	.	.	none	.	PPARG	49	.	NM_015869	exon7	c.C1317A	p.D439E	TCAAGACAACCTG	.	PASS	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49701983	49701983	+	Silent	SNP	G	G	A	rs9858542	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	48	2	39	0	0.0416667	0	G|0.749;A|0.251	0.251	strong	BSN,NS,carcinoma,+1,1	BSN	272	1	NM_003458	exon9	c.G11736A	p.T3912T	ACTGACGGAAGGT	.	scavenged	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386300	7386300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	134	12	142	2	0.0895522	0.0140845	.	.	none	POLR2A_ENST00000412468,NS,carcinoma,-1,1	.	.	1	NM_001102614	exon2	c.G997A	p.E333K	GAGAGGGAAGGGA	.	scavenged	Atlas-SNP
LINGO1	84894	hgsc.bcm.edu	37	15	77906709	77906709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	84	24	92	0	0.285714	0	.	.	none	.	LINGO1	76	.	NM_032808	exon2	c.G1540C	p.V514L	TGCGCACATGCAG	.	PASS	Atlas-SNP
AGAP1	116987	hgsc.bcm.edu	37	2	236653407	236653407	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	274	3	304	1	0.0109489	0.00328947	.	.	none	AGAP1,NS,carcinoma,0,1	AGAP1	95	1	NM_014914	exon5	c.C462T	p.T154T	CCAGACCGTTTAC	.	scavenged	Atlas-SNP
GARNL3	84253	hgsc.bcm.edu	37	9	130155397	130155397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	151	2	153	0	0.013245	0	.	.	none	GARNL3,NS,carcinoma,-1,1	GARNL3	83	1	NM_032293	exon28	c.C2906T	p.S969F	CTACTTCCGAAGC	.	scavenged	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	37	17	65186460	65186460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	144	57	179	0	0.395833	0	.	.	none	.	HELZ	160	.	NM_014877	exon10	c.A569G	p.Q190R	ATTCCTTGTTCTA	.	PASS	Atlas-SNP
PRB2	653247	hgsc.bcm.edu	37	12	11546598	11546598	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	214	4	260	1	0.0186916	0.00384615	.	.	none	PRB2_ENST00000389362,NS,carcinoma,0,2	PRB2	168	2	NM_006248	exon3	c.G414A	p.K138K	TTGTGGCTTTCCT	.	scavenged	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	37	3	42264607	42264607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	118	28	106	0	0.237288	0	.	.	none	.	TRAK1	188	.	NM_001042646	exon16	c.G2240A	p.R747Q	AGGAGCGGGGCAT	.	PASS	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	37	8	144887138	144887138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	32	6	14	0	0.1875	0	.	.	none	SCRIB_ENST00000356994,lower_third,carcinoma,+1,2	SCRIB	192	2	NM_015356	exon20	c.C2717T	p.A906V	GTGCCCGCGCGGT	.	PASS	Atlas-SNP
ZMYM3	9203	hgsc.bcm.edu	37	X	70462020	70462020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	35	27	84	0	0.771429	0	.	.	none	.	ZMYM3	137	.	NM_005096	exon23	c.G3802A	p.D1268N	TCGTACCTCGCCC	.	PASS	Atlas-SNP
DPYS	1807	hgsc.bcm.edu	37	8	105405212	105405212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	42	20	36	0	0.47619	0	.	.	none	.	DPYS	107	.	NM_001385	exon8	c.T1243G	p.S415A	TTGCTGAGATAGT	.	PASS	Atlas-SNP
KLHL40	131377	hgsc.bcm.edu	37	3	42728044	42728044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	240	3	192	0	0.0125	0	.	.	none	KBTBD5,NS,carcinoma,-2,1	.	.	1	NM_152393	exon1	c.T934C	p.F312L	CTGCGCTTCGGCA	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509606	195509606	+	Missense_Mutation	SNP	C	C	T	rs79543693	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	244	5	200	5	0.0204918	0.025	C|0.625;T|0.375	0.375	strong	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.G8845A	p.D2949N	AAGTGTCGGTGAC	.	scavenged	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49692749	49692749	+	Silent	SNP	C	C	T	rs185582385	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	254	68	192	0	0.267717	0	C|0.999;T|0.001	0.001	strong	.	BSN	272	.	NM_003458	exon5	c.C5760T	p.A1920A	CCCGGCCCCCAGT	.	PASS	Atlas-SNP
PRPF40A	55660	hgsc.bcm.edu	37	2	153547487	153547487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	85	5	100	0	0.0588235	0	.	.	none	.	PRPF40A	149	.	NM_017892	exon5	c.G334A	p.A112T	CAGATGCTGTACC	.	PASS	Atlas-SNP
TRPV6	55503	hgsc.bcm.edu	37	7	142572885	142572885	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137	2	171	0	0.0145985	0	.	.	none	TRPV6,colon,carcinoma,-1,1	TRPV6	108	1	NM_018646	exon9	c.G1155A	p.R385R	GACCAGCCGGATA	.	scavenged	Atlas-SNP
PYGL	5836	hgsc.bcm.edu	37	14	51378473	51378473	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212	56	149	0	0.264151	0	.	.	none	.	PYGL	77	.	NM_002863	exon16	c.C1944T	p.N648N	TCTGTAGTTCTCC	.	PASS	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56085002	56085002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	578	9	519	7	0.0155709	0.0134875	.	.	none	PSPH,NS,carcinoma,0,2	PSPH	23	2	NM_004577	exon6	c.G346A	p.V116I	GCTCTACAATACT	.	scavenged	Atlas-SNP
LARP1	23367	hgsc.bcm.edu	37	5	154179585	154179585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	56	46	59	0	0.821429	0	.	.	none	.	LARP1	187	.	NM_015315	exon10	c.T1468C	p.S490P	CGGCCATCCCCAG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253691	1253691	+	Missense_Mutation	SNP	C	C	T	rs56411917	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	96	42	101	0	0.4375	0	C|0.997;T|0.003	0.003	strong	.	MUC5B	473	.	NM_002458	exon16	c.C1855T	p.R619W	TACGCCCGGCACT	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	37	6	38942190	38942190	+	Missense_Mutation	SNP	G	G	A	rs201939427	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	116	2	97	0	0.0172414	0	G|1.000;A|0.000	0.000	strong	DNAH8_ENST00000359357,caecum,carcinoma,+1,4	DNAH8	1239	4	NM_001206927	exon85	c.G12719A	p.R4240H	GTGTACGCGCAGG	.	scavenged	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	37	17	17701758	17701758	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	24	11	37	0	0.458333	0	.	.	none	.	RAI1	121	.	NM_030665	exon3	c.C5496T	p.T1832T	GTGGACCGGCGGC	.	PASS	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	37	9	73477843	73477843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212	82	299	0	0.386792	0	.	.	none	.	TRPM3	700	.	NM_001007471	exon3	c.G443A	p.G148D	GAATGGCCACCTC	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47876625	47876625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169	42	129	0	0.248521	0	.	.	none	.	PKD1L1	328	.	NM_138295	exon37	c.C5837T	p.P1946L	GAGGAGGGCCTGC	.	PASS	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	37	10	21120221	21120221	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	59	2	77	0	0.0338983	0	.	.	none	NEBL,NS,carcinoma,0,1	NEBL	199	1	NM_006393	exon16	c.G1575A	p.K525K	TAAGTCCTTCTTG	.	scavenged	Atlas-SNP
OR52M1	119772	hgsc.bcm.edu	37	11	4567169	4567169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	186	4	258	1	0.0215054	0.00387597	.	.	none	OR52M1,NS,carcinoma,0,1	OR52M1	53	1	NM_001004137	exon1	c.C749T	p.A250V	TCTGTGCCATCCT	.	scavenged	Atlas-SNP
CD96	10225	hgsc.bcm.edu	37	3	111319650	111319650	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	194	2	145	0	0.0103093	0	.	.	none	CD96,NS,carcinoma,-1,1	CD96	75	1	NM_198196	exon8	c.A1024T	p.S342C	GTACATAGTAATA	.	scavenged	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152082269	152082269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	141	5	145	1	0.035461	0.00689655	.	.	none	TCHH,NS,malignant_melanoma,0,1	TCHH	275	1	NM_007113	exon3	c.G3424A	p.E1142K	CTTCCTCCCGATA	.	scavenged	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29604411	29604411	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	121	33	154	0	0.272727	0	.	.	none	.	OVCH1	195	.	NM_183378	exon22	c.T2622C	p.S874S	CACCCAAGAACAT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508975	195508975	+	Missense_Mutation	SNP	G	G	T	rs76458870	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	155	4	138	0	0.0258065	0	G|0.500;T|0.500	0.500	strong	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C9476A	p.S3159Y	GCTGAGGAAGTGT	.	scavenged	Atlas-SNP
CLP1	10978	hgsc.bcm.edu	37	11	57427378	57427378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133	3	156	0	0.0225564	0	.	.	none	CLP1,NS,carcinoma,-1,1	CLP1	40	1	NM_006831	exon2	c.C430T	p.R144C	GGCCGCCGTCCCA	.	scavenged	Atlas-SNP
SLC4A7	9497	hgsc.bcm.edu	37	3	27424644	27424644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	109	22	104	0	0.201835	0	.	.	none	.	SLC4A7	119	.	NM_003615	exon24	c.G3563T	p.S1188I	TCTCACCTATATT	.	PASS	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	37	5	9066712	9066712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	129	51	172	0	0.395349	0	.	.	none	.	SEMA5A	236	.	NM_003966	exon17	c.C2120A	p.T707N	GGCGTGGTCTTCT	.	PASS	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	37	7	127253851	127253851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	147	36	133	1	0.244898	0.0075188	.	.	none	PAX4,NS,carcinoma,0,1	PAX4	66	1	NM_006193	exon4	c.G497A	p.R166Q	ATAGTCCGATTCC	.	scavenged	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	37	18	65180354	65180354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206	29	97	0	0.140777	0	.	.	none	.	DSEL	196	.	NM_032160	exon2	c.A1522C	p.N508H	CATTGTTAAGGTG	.	PASS	Atlas-SNP
AATF	26574	hgsc.bcm.edu	37	17	35307529	35307529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127	50	116	0	0.393701	0	.	.	none	.	AATF	36	.	NM_012138	exon2	c.T107C	p.V36A	CCAGGGTGATTGA	.	PASS	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153463872	153463872	+	Missense_Mutation	SNP	G	G	A	rs377497365		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	278	81	369	0	0.291367	0	.	.	weak	.	FMNL2	75	.	NM_052905	exon10	c.G896A	p.R299H	AACAGCGCTTTGA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515100	195515100	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	126	14	79	5	0.111111	0.0632911	.	.	none	MUC4_ENST00000463781,NS,carcinoma,-2,1	MUC4	1505	1	NM_018406	exon2	c.C3351T	p.H1117H	GGTGGTGTGACCT	.	scavenged	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	37	8	143994724	143994724	+	Silent	SNP	C	C	A	rs6437	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	293	11	164	3	0.0375427	0.0182927	C|0.474;A|0.526	0.526	strong	CYP11B2,mouth,carcinoma,-2,1	CYP11B2	107	1	NM_000498	exon6	c.G1098T	p.R366R	GGCCGCCCGCAGC	.	scavenged	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22804688	22804688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	162	28	62	0	0.17284	0	.	.	none	ZNF521,lymph_node,lymphoid_neoplasm,0,1	ZNF521	269	1	NM_015461	exon4	c.A3194C	p.Y1065S	CACTTATACAGTT	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152327955	152327955	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	134	3	151	1	0.0223881	0.00662252	.	.	none	FLG2,NS,carcinoma,0,1	FLG2	431	1	NM_001014342	exon3	c.C2307T	p.S769S	GCCATAGCTAGAC	.	scavenged	Atlas-SNP
NXF1	10482	hgsc.bcm.edu	37	11	62564687	62564687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	168	53	157	0	0.315476	0	.	.	none	.	NXF1	67	.	NM_006362	exon13	c.C1146G	p.N382K	CTTCAAGTTTTCT	.	PASS	Atlas-SNP
FAM46C	54855	hgsc.bcm.edu	37	1	118165588	118165588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	152	2	164	0	0.0131579	0	.	.	none	FAM46C,pharynx,carcinoma,-1,1	FAM46C	25	1	NM_017709	exon2	c.T98C	p.V33A	AAGTTGTACCTAT	.	scavenged	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	37	15	94858849	94858849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	255	3	172	0	0.0117647	0	.	.	none	MCTP2,NS,carcinoma,+1,1	MCTP2	122	1	NM_001159643	exon3	c.T620C	p.V207A	ACCTGGTTGTCCG	.	scavenged	Atlas-SNP
MSN	4478	hgsc.bcm.edu	37	X	64955264	64955264	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77	55	151	0	0.714286	0	.	.	none	.	MSN	89	.	NM_002444	exon8	c.G931T	p.E311X	GCCCGGGAGGAGA	.	PASS	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	37	6	165848819	165848819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	139	40	133	0	0.28777	0	.	.	none	PDE10A,NS,carcinoma,-1,3	PDE10A	154	3	NM_001130690	exon6	c.G443A	p.R148H	ATGAGGCGGGGTT	.	PASS	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	37	18	31599400	31599400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	378	4	183	0	0.010582	0	.	.	none	NOL4,NS,NS,+1,1	NOL4	139	1	NM_003787	exon6	c.C938T	p.A313V	AGCTGCGCAGAGA	.	scavenged	Atlas-SNP
STRN	6801	hgsc.bcm.edu	37	2	37082372	37082372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	123	2	100	0	0.0162602	0	.	.	none	STRN,NS,carcinoma,-1,1	STRN	71	1	NM_003162	exon15	c.A1961T	p.E654V	TTGGATTCTAAAG	.	scavenged	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31770237	31770237	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	254	4	300	2	0.015748	0.00666667	.	.	none	TSHZ3_ENST00000240587,bladder,carcinoma,0,1	TSHZ3	549	1	NM_020856	exon2	c.T462C	p.S154S	GCTGCTACTGCTG	.	scavenged	Atlas-SNP
SENP1	29843	hgsc.bcm.edu	37	12	48477432	48477432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	110	2	125	0	0.0181818	0	.	.	none	SENP1_ENST00000448372,colon,carcinoma,0,2	SENP1	44	2	NM_001267594	exon6	c.G494A	p.R165H	CTTCGACGACATG	.	scavenged	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30725116	30725116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66	4	94	0	0.0606061	0	.	.	none	.	PCDH7	215	.	NM_032457	exon1	c.C2072T	p.T691M	ATGACACGGGGAC	.	PASS	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	37	11	9444655	9444655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	54	2	64	0	0.037037	0	.	.	none	IPO7,NS,carcinoma,-1,1	IPO7	72	1	NM_006391	exon9	c.C1009T	p.L337F	CATGCTCTCACCT	.	scavenged	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26156929	26156929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	222	50	194	0	0.225225	0	.	.	none	.	HIST1H1E	69	.	NM_005321	exon1	c.C311G	p.S104C	CGGGTTCCTTCAA	.	PASS	Atlas-SNP
ARMC8	25852	hgsc.bcm.edu	37	3	137942263	137942263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	193	3	134	0	0.015544	0	.	.	none	ARMC8_ENST00000481646,colon,carcinoma,0,2	ARMC8	79	2	NM_001267041	exon4	c.G227A	p.S76N	CCTCAAGCACAGA	.	scavenged	Atlas-SNP
AMY2B	280	hgsc.bcm.edu	37	1	104116508	104116508	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	321	115	380	0	0.358255	0	.	.	none	AMY2B,rectum,carcinoma,0,1	AMY2B	80	1	NM_020978	exon6	c.A692T	p.N231I	TGCATAATCTAAA	.	PASS	Atlas-SNP
UPK1A	11045	hgsc.bcm.edu	37	19	36157719	36157719	+	Missense_Mutation	SNP	C	C	T	rs367904056		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	142	3	157	1	0.0211268	0.00636943	.	.	weak	UPK1A,colon,carcinoma,-1,1	UPK1A	23	1	NM_007000	exon1	c.C5T	p.A2V	TGATGGCGTCTGC	.	scavenged	Atlas-SNP
ACOT4	122970	hgsc.bcm.edu	37	14	74058832	74058832	+	Missense_Mutation	SNP	C	C	T	rs3742819	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	6	6	0	0	1	.	C|0.599;T|0.401	0.401	strong	.	ACOT4	25	.	NM_152331	exon1	c.C169T	p.R57C	GACGCCCGCGGCG	.	PASS	Atlas-SNP
LRRC37A2	474170	hgsc.bcm.edu	37	17	44630768	44630768	+	Missense_Mutation	SNP	A	A	G	rs76911105	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	1073	18	1216	6	0.0167754	0.00493421	.	.	alt	LRRC37A2,NS,carcinoma,0,2	LRRC37A2	37	2	NM_001006607	exon11	c.A4812G	p.I1604M	ACAGATATGTTGT	.	scavenged	Atlas-SNP
LRIT2	340745	hgsc.bcm.edu	37	10	85981799	85981799	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94	2	123	1	0.0212766	0.00813008	.	.	none	LRIT2,colon,carcinoma,-2,3	LRIT2	81	3	NM_001017924	exon3	c.C1530T	p.T510T	TGCAGGGGTGCAG	.	scavenged	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	37	17	19470152	19470152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	194	76	291	0	0.391753	0	.	.	none	.	SLC47A1	55	.	NM_018242	exon13	c.C1156T	p.H386Y	GTTTCCCACCTCT	.	PASS	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	37	17	67020435	67020435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	303	4	351	1	0.0132013	0.002849	.	.	none	ABCA9,NS,carcinoma,0,1	ABCA9	192	1	NM_080283	exon17	c.T2201C	p.I734T	TCAGAGATGTGCT	.	scavenged	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	37	12	9006740	9006740	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	61	21	83	0	0.344262	0	.	.	none	.	A2ML1	199	.	NM_144670	exon21	c.T2607C	p.T869T	CTTTACTATTAGT	.	PASS	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17039035	17039035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	62	27	54	0	0.435484	0	.	.	none	.	CPAMD8	192	.	NM_015692	exon25	c.G3295A	p.G1099S	CTGGACCATGGCC	.	PASS	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	37	9	35957229	35957229	+	Silent	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	87	37	88	0	0.425287	0	.	.	none	.	OR2S2	46	.	NM_019897	exon1	c.C867A	p.T289T	CATCGGGGTCACC	.	PASS	Atlas-SNP
TBC1D12	23232	hgsc.bcm.edu	37	10	96163177	96163177	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	119	6	134	0	0.0504202	0	.	.	none	.	TBC1D12	51	.	NM_015188	exon1	c.T807C	p.I269I	TGACATTCACTTC	.	PASS	Atlas-SNP
ARSF	416	hgsc.bcm.edu	37	X	3021805	3021805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	109	72	226	1	0.66055	0.00442478	.	.	none	.	ARSF	97	.	NM_004042	exon9	c.G1105A	p.G369R	ATAGGTGGAAAAG	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100	4	99	0	0.04	0	.	.	weak	MED16,colon,carcinoma,0,1	MED16	61	1	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	scavenged	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237791370	237791370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	144	3	179	0	0.0208333	0	.	.	none	RYR2,colon,carcinoma,0,2	RYR2	1273	2	NM_001035	exon41	c.C6430T	p.R2144C	ATGATTCGTGGAT	.	scavenged	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66	2	78	0	0.030303	0	.	.	none	MAML3_ENST00000509479,NS,malignant_melanoma,0,2	MAML3	192	2	NM_018717	exon2	c.G1482A	p.Q494Q	CTGCTGCTGCTGC	.	scavenged	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47968840	47968840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211	3	206	0	0.014218	0	.	.	none	PKD1L1,NS,carcinoma,0,1	PKD1L1	328	1	NM_138295	exon7	c.G1021A	p.E341K	TTGCCTCAGACAT	.	scavenged	Atlas-SNP
ACOX1	51	hgsc.bcm.edu	37	17	73945827	73945827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	147	58	151	0	0.394558	0	.	.	none	.	ACOX1	85	.	NM_007292	exon10	c.A1450C	p.T484P	CTTCGGTTAGGCT	.	PASS	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	37	X	140985325	140985325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169	141	211	0	0.83432	0	.	.	none	.	MAGEC3	228	.	NM_177456	exon5	c.C887A	p.T296N	TGCTCACTATACA	.	PASS	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	37	22	38119859	38119859	+	Silent	SNP	C	C	T	rs66505048	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	248	3	242	2	0.0120968	0.00826446	C|0.500;T|0.500	0.500	strong	TRIOBP_ENST00000344404,NS,carcinoma,0,8	TRIOBP	262	8	NM_001039141	exon7	c.C1296T	p.C432C	ATCCTGCGCCCAG	.	scavenged	Atlas-SNP
IRAK2	3656	hgsc.bcm.edu	37	3	10251272	10251272	+	Splice_Site	SNP	G	G	A	rs140330791	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	68	14	54	0	0.205882	0	G|1.000;C|0.000	.	alt	IRAK2_ENST00000256458,caecum,carcinoma,-1,2	IRAK2	113	2	NM_001570	exon4	c.425-1G>A	.	TTTCCAGGGTCCT	.	PASS	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	37	18	76755256	76755256	+	Missense_Mutation	SNP	G	G	A	rs200983101	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	8	8	0	0	1	.	G|0.996;A|0.004	0.004	strong	.	SALL3	162	.	NM_171999	exon2	c.G3265A	p.G1089R	CCCGCCGGGCCTC	.	PASS	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	37	6	123759264	123759264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	79	26	52	0	0.329114	0	.	.	none	.	TRDN	88	.	NM_001251987	exon12	c.A998G	p.K333R	TCTTCTTTTTCTG	.	PASS	Atlas-SNP
TCP1	6950	hgsc.bcm.edu	37	6	160208813	160208813	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	455	124	380	0	0.272527	0	.	.	none	.	TCP1	37	.	NM_030752	exon3	c.C241T	p.L81L	CTTGCAGATCAGC	.	PASS	Atlas-SNP
GOLGA6L10	647042	hgsc.bcm.edu	37	15	82637061	82637061	+	Missense_Mutation	SNP	C	C	T	rs201670904	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	4	4	0	0	1	.	.	.	weak	.	GOLGA6L10	16	.	NM_001164465	exon6	c.G1025A	p.R342Q	AGCTCCCGCAGCC	.	PASS	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	37	11	124740064	124740064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	138	67	130	0	0.485507	0	.	.	none	ROBO3_ENST00000397801,NS,carcinoma,0,6	ROBO3	199	6	NM_022370	exon5	c.G770T	p.R257L	TAGAGCGTCCCTC	.	PASS	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	37	17	10399327	10399327	+	Silent	SNP	C	C	T	rs149731873	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	143	8	132	1	0.0559441	0.00757576	C|0.999;T|0.001	0.001	strong	MYH1,NS,carcinoma,0,1	MYH1	403	1	NM_005963	exon35	c.G5109A	p.R1703R	GATTTTCCTGCTC	.	scavenged	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190873379	190873379	+	Missense_Mutation	SNP	A	A	G	rs1803592		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	73	9	132	22	0.123288	0.166667	.	.	weak	FRG1,arm,malignant_melanoma,0,1	FRG1	76	1	NM_004477	exon3	c.A196G	p.K66E	ATGGATAAGGGAA	.	scavenged	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	37	13	93879792	93879792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66	26	87	0	0.393939	0	.	.	none	.	GPC6	102	.	NM_005708	exon1	c.G83T	p.R28L	AGGCTCGGAGCTG	.	PASS	Atlas-SNP
IER2	9592	hgsc.bcm.edu	37	19	13264330	13264330	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	12	7	17	0	0.583333	0	.	.	none	.	IER2	14	.	NM_004907	exon2	c.C330T	p.C110C	CGCCTGCTGTGCC	.	PASS	Atlas-SNP
HIST1H2BJ	8970	hgsc.bcm.edu	37	6	27100241	27100241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99	4	98	0	0.040404	0	.	.	none	.	HIST1H2BJ	21	.	NM_021058	exon1	c.A289G	p.T97A	CGGCCGTCTGGAT	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124385389	124385389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	184	50	171	0	0.271739	0	.	.	none	.	KALRN	556	.	NM_001024660	exon46	c.C6436T	p.R2146C	GAGAGGCGCGTGT	.	PASS	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	37	11	608546	608546	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	97	39	98	0	0.402062	0	.	.	none	PHRF1_ENST00000264555,NS,lymphoid_neoplasm,+1,2	PHRF1	188	2	NM_020901	exon14	c.G3087A	p.S1029S	GAGCTCGAGGTCA	.	PASS	Atlas-SNP
RNF133	168433	hgsc.bcm.edu	37	7	122338257	122338257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	455	87	326	0	0.191209	0	.	.	none	.	RNF133	41	.	NM_139175	exon1	c.T716G	p.L239R	ACTCGAAGTTGGA	.	PASS	Atlas-SNP
WBP11	51729	hgsc.bcm.edu	37	12	14952649	14952649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	63	2	83	0	0.031746	0	.	.	none	WBP11,NS,carcinoma,-1,1	WBP11	66	1	NM_016312	exon4	c.G110A	p.R37H	ATCATGCGCTGTT	.	scavenged	Atlas-SNP
NHLRC3	387921	hgsc.bcm.edu	37	13	39621247	39621247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99	2	112	0	0.020202	0	.	.	none	NHLRC3,NS,carcinoma,+1,1	NHLRC3	35	1	NM_001012754	exon6	c.C749T	p.A250V	TAGGAGCATGGAA	.	scavenged	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002404	36002404	+	Missense_Mutation	SNP	C	C	T	rs138902616		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	45	9	52	1	0.2	0.0192308	.	.	weak	DMKN,NS,carcinoma,0,2	DMKN	116	2	NM_001126058	exon5	c.G827A	p.S276N	CTGCTGCTGCCAC	.	scavenged	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50432601	50432601	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	203	34	113	0	0.167488	0	.	.	none	DCC,NS,carcinoma,+1,1	DCC	360	1	NM_005215	exon3	c.C600T	p.S200S	GATCAGCCGACTC	.	PASS	Atlas-SNP
CASC3	22794	hgsc.bcm.edu	37	17	38325589	38325589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206	68	222	0	0.330097	0	.	.	none	.	CASC3	39	.	NM_007359	exon12	c.G1978A	p.V660I	TCACAGGTATATG	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	37	5	14359502	14359502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	376	155	456	0	0.412234	0	.	.	none	.	TRIO	305	.	NM_007118	exon13	c.C2253G	p.N751K	CCACAACAGCTCC	.	PASS	Atlas-SNP
OR6K6	128371	hgsc.bcm.edu	37	1	158725103	158725103	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128	2	152	0	0.015625	0	.	.	none	OR6K6,right_upper_lobe,carcinoma,+2,1	OR6K6	81	1	NM_001005184	exon1	c.C498T	p.P166P	GATTCCCAAACTT	.	scavenged	Atlas-SNP
RBMXL1	494115	hgsc.bcm.edu	37	1	89448539	89448539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	232	6	373	8	0.0258621	0.0214477	.	.	none	CCBL2,NS,carcinoma,-1,1	.	.	1	NM_001162536	exon3	c.G971C	p.R324P	CTGTCTCGACTTC	.	scavenged	Atlas-SNP
UBTD1	80019	hgsc.bcm.edu	37	10	99327781	99327781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	157	3	132	0	0.0191083	0	.	.	none	UBTD1,colon,carcinoma,-2,1	UBTD1	19	1	NM_024954	exon2	c.T181C	p.F61L	CCTGCCTTCGAGG	.	scavenged	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6643761	6643761	+	Missense_Mutation	SNP	T	T	A	rs368872716		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60	25	77	0	0.416667	0	.	.	weak	.	DCHS1	277	.	NM_003737	exon21	c.A9146T	p.E3049V	GGGAACTCATTGA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418968	105418968	+	Silent	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	183	67	236	0	0.36612	0	.	.	none	.	AHNAK2	719	.	NM_138420	exon7	c.C2820G	p.G940G	CTTGGGGCCCTTA	.	PASS	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	37	9	289578	289578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	69	2	103	0	0.0289855	0	.	.	none	DOCK8_ENST00000453981,NS,carcinoma,0,2	DOCK8	401	2	NM_203447	exon4	c.G401A	p.R134Q	TGAACCGGAAGTA	.	scavenged	Atlas-SNP
