Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
FAM155A	728215	hgsc.bcm.edu	37	13	108518716	108518727	+	In_Frame_Del	DEL	GCTGCTGCTGCT	GCTGCTGCTGCT	-	rs3832903	bycluster;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	GCTGCTGCTGCT	GCTGCTGCTGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	18	12	15	0	0.666667	0	GCTGCTGCTGCT|0.909;-|0.091	0.091	strong	.	FAM155A	82	.	NM_001080396	exon1	c.219_230del	p.73_77del	.	.	PASS	Atlas-Indel
C6	729	hgsc.bcm.edu	37	5	41181559	41181560	+	Frame_Shift_Ins	INS	-	-	C	rs372345940		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	156	31	145	.	0.199	.	.	.	weak	.	C6	197	.	NM_001115131	exon7	c.829_830insG	p.S277fs	.	.	PASS	Pindel,Atlas-Indel
CHST4	10164	hgsc.bcm.edu	37	16	71570645	71570645	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	83	17	84	.	0.205	.	.	.	none	.	CHST4	47	.	NM_001166395	exon2	c.64delC	p.L22fs	.	.	PASS	Pindel,Atlas-Indel
AR	367	hgsc.bcm.edu	37	X	66765158	66765159	+	In_Frame_Ins	INS	-	-	GCTGCA	rs71905623	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	20	14	32	0	0.7	0	.	.	alt	.	AR	249	.	NM_000044	exon1	c.170_171insGCTGCA	p.L57delinsLLQ	.	.	PASS	Atlas-Indel
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	rs200984527		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	92	13	83	0	0.141304	0	.	.	weak	.	NEFH	178	.	NM_021076	exon4	c.1951_1974del	p.651_658del	.	.	PASS	Atlas-Indel
SPEF2	79925	hgsc.bcm.edu	37	5	35705894	35705894	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	69	11	56	0	0.15942	0	.	.	none	.	SPEF2	324	.	NM_024867	exon18	c.2648delC	p.A883fs	.	.	PASS	Atlas-Indel
LPIN3	64900	hgsc.bcm.edu	37	20	39977298	39977299	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	56	12	40	.	0.214	.	.	.	none	.	LPIN3	69	.	NM_022896	exon4	c.328_329insG	p.W110fs	.	.	PASS	Pindel,Atlas-Indel
STAT4	6775	hgsc.bcm.edu	37	2	192011486	192011486	+	Splice_Site	DEL	A	A	-	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	68	12	55	.	0.176	.	.	.	none	.	STAT4	85	.	NM_003151	exon4	c.129-2T>-	.	.	.	PASS	Pindel
SETDB1	9869	hgsc.bcm.edu	37	1	150917623	150917624	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	191	32	176	.	0.168	.	.	.	none	.	SETDB1	204	.	NM_001243491	exon9	c.1179_1180insG	p.G393fs	.	.	PASS	Pindel
CASP5	838	hgsc.bcm.edu	37	11	104879687	104879687	+	Frame_Shift_Del	DEL	T	T	-	rs372526393		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	67	12	49	.	0.179	.	.	.	weak	.	CASP5	213	.	NM_001136112	exon2	c.68delG	p.R23fs	.	.	PASS	Pindel
CBWD3	445571	hgsc.bcm.edu	37	9	70900911	70900912	+	Frame_Shift_Ins	INS	-	-	A	rs200498038	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	120	20	108	.	0.167	.	.	.	weak	.	CBWD3	10	.	NM_201453	exon11	c.771_772insA	p.Q257fs	.	.	PASS	Pindel
RBM43	375287	hgsc.bcm.edu	37	2	152108088	152108088	+	Frame_Shift_Del	DEL	T	T	-	rs142934811	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	75	15	68	.	0.200	.	.	.	strong	.	RBM43	35	.	NM_198557	exon4	c.407delT	p.I136fs	.	.	PASS	Pindel
ASPN	54829	hgsc.bcm.edu	37	9	95237025	95237030	+	In_Frame_Del	DEL	TCATCA	TCATCA	-	rs111419727	bycluster;byfrequency;alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	TCATCA	TCATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	127	19	92	.	0.150	.	-|0.500;TCA|0.500	0.500	alt	.	ASPN	52	.	NM_001193335	exon2	c.151_156del	p.51_52del	.	.	PASS	Pindel
SIRPA	140885	hgsc.bcm.edu	37	20	1896052	1896054	+	In_Frame_Del	DEL	CGA	CGA	-	rs139878822	bycluster;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	CGA	CGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	71	15	78	.	0.211	.	.	.	strong	SIRPA,NS,carcinoma,-1,1	SIRPA	83	1	NM_001040022	exon3	c.386_388del	p.129_130del	.	.	PASS	Pindel
OR13C2	392376	hgsc.bcm.edu	37	9	107367665	107367666	+	Frame_Shift_Del	DEL	GC	GC	-	rs143760725	bycluster;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	579	118	507	.	0.204	.	.	.	strong	.	OR13C2	46	.	NM_001004481	exon1	c.244_245del	p.82_82del	.	.	PASS	Pindel
TPO	7173	hgsc.bcm.edu	37	2	1544451	1544451	+	Missense_Mutation	SNP	G	G	A	rs368181428		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	71	2	70	0	0.028169	0	.	.	weak	TPO,brainstem,primitive_neuroectodermal_tumour-medulloblastoma,0,1	TPO	224	1	NM_001206744	exon16	c.G2704A	p.V902I	CAGGCCGTAGGGA	.	scavenged	Atlas-SNP
SPOCK3	50859	hgsc.bcm.edu	37	4	167675875	167675875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	143	2	114	0	0.013986	0	.	.	none	SPOCK3,rectum,carcinoma,+2,1	SPOCK3	90	1	NM_016950	exon9	c.G724A	p.D242N	TGGTATCGAATCC	.	scavenged	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240804	39240804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	43	10	30	4	0.232558	0.133333	.	.	none	KRTAP4-7,caecum,carcinoma,0,1	KRTAP4-7	49	1	NM_033061	exon1	c.C346A	p.R116S	TGCTGCCGCCCCT	.	scavenged	Atlas-SNP
ZNF233	353355	hgsc.bcm.edu	37	19	44777859	44777859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	142	44	125	0	0.309859	0	.	.	none	.	ZNF233	73	.	NM_001207005	exon5	c.G1046A	p.R349Q	ATGCCCGGAGCTC	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2816548	2816548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	114	5	114	0	0.0438596	0	.	.	none	SRRM2,colon,carcinoma,-1,1	SRRM2	263	1	NM_016333	exon11	c.C6019T	p.R2007C	AGGTCCCGCTCTC	.	PASS	Atlas-SNP
GPR139	124274	hgsc.bcm.edu	37	16	20043683	20043683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	240	4	236	2	0.0166667	0.00847458	.	.	none	GPR139,lower_third,carcinoma,+1,1	GPR139	75	1	NM_001002911	exon2	c.C436T	p.R146W	CTTTCCGGGTGCG	.	scavenged	Atlas-SNP
DCAF10	79269	hgsc.bcm.edu	37	9	37860089	37860089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	183	3	123	0	0.0163934	0	.	.	none	DCAF10,NS,carcinoma,0,1	DCAF10	31	1	NM_024345	exon6	c.C1210T	p.L404F	GAAGTTCTTGGTG	.	scavenged	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	37	16	67263851	67263851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	122	2	123	0	0.0163934	0	.	.	none	FHOD1,NS,carcinoma,+1,1	FHOD1	86	1	NM_013241	exon21	c.C3257T	p.P1086L	GTGGAGGGCCCCA	.	scavenged	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254058	39254058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	100	14	74	8	0.14	0.108108	.	.	none	KRTAP4-8,NS,carcinoma,0,2	KRTAP4-8	57	2	NM_031960	exon1	c.C279A	p.S93R	GCAGCAGCTAGGG	.	scavenged	Atlas-SNP
ALG6	29929	hgsc.bcm.edu	37	1	63867944	63867944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	66	4	89	0	0.0606061	0	.	.	none	.	ALG6	33	.	NM_013339	exon4	c.A187G	p.N63D	AGTGATAACAATT	.	PASS	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	37	15	56387864	56387864	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	319	127	242	0	0.398119	0	.	.	none	.	RFX7	170	.	NM_022841	exon9	c.C2062T	p.Q688X	GTTTCTGCCCTTC	.	PASS	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	37	1	103491838	103491838	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	374	4	333	0	0.0106952	0	.	.	none	COL11A1_ENST00000370096,NS,carcinoma,-2,1	COL11A1	972	1	NM_001854	exon6	c.G831A	p.E277E	TTTATACTCTGCT	.	scavenged	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	rs373314940		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	38	6	46	1	0.157895	0.0217391	.	.	weak	MN1,caecum,carcinoma,0,2	MN1	122	2	NM_002430	exon1	c.A1599G	p.Q533Q	CTGCTGTTGCTGC	.	scavenged	Atlas-SNP
CNGB3	54714	hgsc.bcm.edu	37	8	87641188	87641188	+	Missense_Mutation	SNP	C	C	T	rs77277189	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	165	41	190	0	0.248485	0	C|0.997;T|0.003	0.003	strong	.	CNGB3	176	.	NM_019098	exon12	c.G1439A	p.R480Q	CAAGTCCGAACTC	.	PASS	Atlas-SNP
TNFRSF10C	8794	hgsc.bcm.edu	37	8	22974370	22974370	+	Silent	SNP	G	G	A	rs151239314	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	152	6	143	1	0.0394737	0.00699301	G|0.882;A|0.118	0.118	strong	TNFRSF10C,colon,carcinoma,0,2	TNFRSF10C	30	2	NM_003841	exon5	c.G606A	p.P202P	CAGCCCGGGGACT	.	scavenged	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55148031	55148031	+	Silent	SNP	T	T	C	rs637515		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	320	8	298	4	0.025	0.0134228	.	.	weak	LILRB1,NS,carcinoma,+2,1	LILRB1	140	1	NM_001081637	exon14	c.T1740C	p.P580P	TCCTCCTTCCCCA	.	scavenged	Atlas-SNP
GRK4	2868	hgsc.bcm.edu	37	4	2986263	2986263	+	Missense_Mutation	SNP	C	C	T	rs146194528		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	391	7	292	0	0.0179028	0	C|1.000;T|0.000	0.000	weak	GRK4_ENST00000398052,NS,carcinoma,0,3	GRK4	72	3	NM_182982	exon2	c.C76T	p.R26C	AGTGGTCGTAGTA	.	scavenged	Atlas-SNP
MPPED1	758	hgsc.bcm.edu	37	22	43870629	43870629	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	110	2	91	0	0.0181818	0	.	.	none	MPPED1_ENST00000538182,NS,carcinoma,0,5	MPPED1	59	5	NM_001044370	exon4	c.C420T	p.Y140Y	GCCCTACGAGTAC	.	scavenged	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	37	10	63852686	63852686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	128	3	109	0	0.0234375	0	.	.	none	ARID5B,NS,haematopoietic_neoplasm,0,1	ARID5B	125	1	NM_032199	exon10	c.G3464T	p.G1155V	CATATGGGGACCT	.	scavenged	Atlas-SNP
GRB2	2885	hgsc.bcm.edu	37	17	73321980	73321980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	41	11	57	0	0.268293	0	.	.	none	.	GRB2	33	.	NM_002086	exon4	c.A298G	p.K100E	CTTACTTGACAGA	.	PASS	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	37	3	51317590	51317590	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	228	64	175	0	0.280702	0	.	.	none	.	DOCK3	397	.	NM_004947	exon27	c.T2877C	p.H959H	CACCCATTTCCAG	.	PASS	Atlas-SNP
ZMYND15	84225	hgsc.bcm.edu	37	17	4645298	4645298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	118	40	94	0	0.338983	0	.	.	none	.	ZMYND15	87	.	NM_001136046	exon4	c.G916A	p.A306T	ACCTTTGCTTCCC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195510706	195510706	+	Missense_Mutation	SNP	G	G	A	rs71291868	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	92	9	106	7	0.0978261	0.0660377	AAGC|0.500;GTGT|0.500	.	alt	MUC4_ENST00000463781,NS,carcinoma,-1,2	MUC4	1505	2	NM_018406	exon2	c.C7745T	p.T2582I	GAGGAAGTGCTGG	.	scavenged	Atlas-SNP
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907708	12907708	+	Silent	SNP	A	A	G	rs4026149	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	198	6	199	7	0.030303	0.0351759	A|0.667;G|0.333	0.333	strong	HNRNPCL1,NS,carcinoma,-1,1	HNRNPCL1	68	1	NM_001013631	exon2	c.T435C	p.R145R	ACGTTGACGTTTC	.	scavenged	Atlas-SNP
TMCC2	9911	hgsc.bcm.edu	37	1	205238355	205238355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	83	4	87	0	0.0481928	0	.	.	none	.	TMCC2	89	.	NM_014858	exon3	c.A1025G	p.K342R	ACCAGAAGTCAGC	.	PASS	Atlas-SNP
ANKRD36	375248	hgsc.bcm.edu	37	2	97869931	97869931	+	Missense_Mutation	SNP	A	A	T	rs76309140	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	23	4	27	1	0.173913	0.037037	.	.	weak	ANKRD36_ENST00000420699,NS,carcinoma,0,14	ANKRD36	170	14	NM_001164315	exon50	c.A2992T	p.T998S	CAGGCTACAAGTG	.	scavenged	Atlas-SNP
SRP68	6730	hgsc.bcm.edu	37	17	74063378	74063378	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	284	5	251	1	0.0176056	0.00398406	.	.	none	SRP68,colon,carcinoma,-1,1	SRP68	61	1	NM_014230	exon3	c.A285G	p.R95R	TGTTTTTCGAAGA	.	scavenged	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151932991	151932991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	192	6	150	0	0.03125	0	.	.	none	MLL3_ENST00000355193,NS,malignant_melanoma,+2,4	MLL3	1564	4	NM_170606	exon16	c.C2680T	p.R894W	GTCTCCGCTTTCC	.	scavenged	Atlas-SNP
NRF1	4899	hgsc.bcm.edu	37	7	129317486	129317486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	112	3	95	1	0.0267857	0.0105263	.	.	none	NRF1,NS,carcinoma,0,1	NRF1	40	1	NM_005011	exon4	c.C353T	p.T118M	GAGCCACGTTAGA	.	scavenged	Atlas-SNP
HRCT1	646962	hgsc.bcm.edu	37	9	35906607	35906607	+	Missense_Mutation	SNP	G	G	C	rs201684694	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	22	11	32	2	0.5	0.0625	.	.	alt	HRCT1,NS,carcinoma,0,1	HRCT1	14	1	NM_001039792	exon1	c.G323C	p.R108P	CCCACCGCCACCA	.	scavenged	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	37	11	67022437	67022437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	145	2	169	0	0.0137931	0	.	.	none	KDM2A,NS,carcinoma,-1,2	KDM2A	80	2	NM_012308	exon21	c.C3400T	p.R1134X	ATCACTCGAAAAG	.	scavenged	Atlas-SNP
DPY19L4	286148	hgsc.bcm.edu	37	8	95800214	95800214	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	279	3	276	2	0.0107527	0.00724638	.	.	none	DPY19L4,NS,carcinoma,+2,1	DPY19L4	60	1	NM_181787	exon18	c.C1941T	p.I647I	TGCTATCTGCAAT	.	scavenged	Atlas-SNP
VPS33A	65082	hgsc.bcm.edu	37	12	122748725	122748725	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	185	3	132	0	0.0162162	0	.	.	none	VPS33A,NS,carcinoma,+2,1	VPS33A	61	1	NM_022916	exon2	c.C124T	p.L42L	CAGTTAGGTATTC	.	scavenged	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	37	19	4511679	4511679	+	Missense_Mutation	SNP	C	C	T	rs200355083		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	124	25	111	29	0.201613	0.261261	.	.	weak	PLIN4,NS,carcinoma,+2,1	PLIN4	191	1	NM_001080400	exon3	c.G2251A	p.A751T	ACACAGCATCTTT	.	scavenged	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113259095	113259095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	198	60	204	0	0.30303	0	.	.	none	SVEP1,colon,carcinoma,0,1	SVEP1	326	1	NM_153366	exon8	c.G1800C	p.K600N	CCTTACCTTTTCA	.	PASS	Atlas-SNP
SBNO2	22904	hgsc.bcm.edu	37	19	1113655	1113655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	110	4	147	0	0.0363636	0	.	.	none	SBNO2_ENST00000250872,NS,carcinoma,-1,2	SBNO2	112	2	NM_014963	exon19	c.A2126G	p.E709G	ACCCGCTCCAGGA	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128752802	128752802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	127	46	131	1	0.362205	0.00763359	.	.	none	MYC_ENST00000377970,NS,carcinoma,+2,2	MYC	168	2	NM_002467	exon3	c.G963C	p.Q321H	ACATCAGCACAAC	.	scavenged	Atlas-SNP
SALL2	6297	hgsc.bcm.edu	37	14	21992636	21992636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	200	2	174	1	0.01	0.00574713	.	.	none	SALL2,scalp,malignant_melanoma,-1,2	SALL2	95	2	NM_005407	exon2	c.G1226A	p.R409H	GTAAAACGGTTTC	.	scavenged	Atlas-SNP
TKT	7086	hgsc.bcm.edu	37	3	53259825	53259825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	129	3	161	1	0.0232558	0.00621118	.	.	none	TKT,NS,carcinoma,+2,1	TKT	38	1	NM_001258028	exon15	c.A1843G	p.I615V	TGTCGATACCAAA	.	scavenged	Atlas-SNP
PFKFB2	5208	hgsc.bcm.edu	37	1	207242832	207242832	+	Silent	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	182	2	146	0	0.010989	0	.	.	none	PFKFB2_ENST00000367079,bladder,carcinoma,0,4	PFKFB2	70	4	NM_001018053	exon11	c.C1051A	p.R351R	GCACTTCGAGATC	.	scavenged	Atlas-SNP
ID3	3399	hgsc.bcm.edu	37	1	23885690	23885690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	111	70	96	0	0.630631	0	.	.	none	ID3,NS,lymphoid_neoplasm,-1,1	ID3	29	1	NM_002167	exon1	c.C228A	p.Y76X	GAGAATGTAGTCG	.	PASS	Atlas-SNP
UGT2B28	54490	hgsc.bcm.edu	37	4	70152499	70152499	+	Silent	SNP	T	T	A	rs41292341	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	183	7	150	0	0.0382514	0	T|0.972;A|0.028	0.028	strong	UGT2B28,caecum,carcinoma,0,1	UGT2B28	101	1	NM_053039	exon3	c.T900A	p.G300G	CTCTGGTGAAAAT	.	scavenged	Atlas-SNP
TRIM58	25893	hgsc.bcm.edu	37	1	248039526	248039526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	209	3	186	0	0.0143541	0	.	.	none	TRIM58,NS,carcinoma,0,1	TRIM58	143	1	NM_015431	exon6	c.C1196T	p.S399L	CCCCATCAGTGCC	.	scavenged	Atlas-SNP
GPR101	83550	hgsc.bcm.edu	37	X	136112327	136112327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	48	33	48	0	0.6875	0	.	.	none	.	GPR101	96	.	NM_054021	exon1	c.G1507A	p.D503N	CAGAATCGTAGGA	.	PASS	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	37	1	186277188	186277188	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	193	4	175	2	0.0207254	0.0114286	.	.	none	PRG4,NS,carcinoma,0,1	PRG4	259	1	NM_005807	exon7	c.G2337A	p.K779K	CCCTAAGGGGACT	.	scavenged	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921277	12921277	+	Silent	SNP	A	A	G	rs3204826	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	373	12	348	5	0.0321716	0.0143678	A|0.996;G|0.004	0.004	strong	PRAMEF2,NS,carcinoma,0,1	PRAMEF2	85	1	NM_023014	exon4	c.A1068G	p.L356L	CGTGTTAGAGGGC	.	scavenged	Atlas-SNP
RGPD3	653489	hgsc.bcm.edu	37	2	107049631	107049631	+	Silent	SNP	C	C	T	rs2912696		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	542	10	551	3	0.0184502	0.00544465	.	.	weak	RGPD3_ENST00000304514,bladder,carcinoma,0,6	RGPD3	316	6	NM_001144013	exon16	c.G2316A	p.A772A	TGAATCCGCATTT	.	scavenged	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	37	20	46295036	46295036	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	243	5	167	2	0.0205761	0.011976	.	.	none	SULF2,NS,carcinoma,0,1	SULF2	131	1	NM_001161841	exon12	c.C1773T	p.Y591Y	GGCTGAGTAGTCG	.	scavenged	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888049	52888049	+	Missense_Mutation	SNP	C	C	A	rs75346003	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	33	9	28	2	0.272727	0.0714286	C|0.872;A|0.128	0.128	strong	ZNF880,colon,carcinoma,-1,2	ZNF880	45	2	NM_001145434	exon4	c.C1216A	p.Q406K	GGAGAGCAACCTT	.	scavenged	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	37	12	54792481	54792481	+	Missense_Mutation	SNP	C	C	T	rs370125974		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	165	4	138	2	0.0242424	0.0144928	.	.	weak	ITGA5,colon,carcinoma,-1,2	ITGA5	99	2	NM_002205	exon28	c.G2843A	p.R948Q	TGCTCCCGCTGTG	.	scavenged	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132474551	132474551	+	Missense_Mutation	SNP	C	C	T	rs146333218	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	95	2	74	1	0.0210526	0.0135135	C|1.000;T|0.000	0.000	strong	EP400,NS,carcinoma,-1,1	EP400	370	1	NM_015409	exon8	c.C2452T	p.R818C	CAGCTCCGTGAAG	.	scavenged	Atlas-SNP
RBMXL1	494115	hgsc.bcm.edu	37	1	89448539	89448539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	350	10	327	6	0.0285714	0.0183486	.	.	none	CCBL2,NS,carcinoma,-1,1	.	.	1	NM_001162536	exon3	c.G971C	p.R324P	CTGTCTCGACTTC	.	scavenged	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	37	2	38977316	38977316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	87	33	86	0	0.37931	0	.	.	none	.	SRSF7	29	.	NM_001195446	exon2	c.A49T	p.N17Y	CCAGGTTACCAAC	.	PASS	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	37	6	4058968	4058968	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	98	2	105	0	0.0204082	0	.	.	none	PRPF4B_ENST00000337659,rectum,carcinoma,0,2	PRPF4B	140	2	NM_003913	exon14	c.C2740T	p.R914X	ATGATTCGAAAAG	.	scavenged	Atlas-SNP
GTF2I	2969	hgsc.bcm.edu	37	7	74148279	74148279	+	Missense_Mutation	SNP	A	A	G	rs1135649		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	308	6	309	3	0.0194805	0.00970874	.	.	weak	GTF2I,NS,carcinoma,0,7	GTF2I	40	7	NM_032999	exon16	c.A1319G	p.N440S	TTCTGAATTCAAC	.	scavenged	Atlas-SNP
FBXW8	26259	hgsc.bcm.edu	37	12	117465850	117465850	+	Missense_Mutation	SNP	G	G	A	rs368052577		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	149	3	110	0	0.0201342	0	.	.	weak	FBXW8,colon,carcinoma,0,3	FBXW8	53	3	NM_153348	exon11	c.G1670A	p.R557H	TGATCCGCGCCTA	.	scavenged	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	37	17	71431699	71431699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	69	3	101	1	0.0434783	0.00990099	.	.	none	SDK2,NS,carcinoma,+1,1	SDK2	219	1	NM_001144952	exon9	c.A1085G	p.D362G	CCCCCGTCGTTGC	.	scavenged	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240729	39240729	+	Missense_Mutation	SNP	A	A	G	rs200532954	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	72	14	55	7	0.194444	0.127273	.	.	weak	KRTAP4-9_ENST00000377734,bladder,carcinoma,0,4	KRTAP4-7	49	4	NM_033061	exon1	c.A271G	p.M91V	TGCTGTATGTCCA	.	scavenged	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	37	9	33798075	33798075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	115	5	86	2	0.0434783	0.0232558	.	.	none	PRSS3_ENST00000361005,brain,glioma,0,3	PRSS3	79	3	NM_007343	exon3	c.T620C	p.F207S	TGAGCTTTGGTGG	.	scavenged	Atlas-SNP
SKOR1	390598	hgsc.bcm.edu	37	15	68118796	68118796	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	142	2	86	0	0.0140845	0	.	.	none	SKOR1_ENST00000380035,NS,carcinoma,0,3	SKOR1	144	3	NM_001258024	exon5	c.C1188T	p.C396C	CAAGTGCGGCTAC	.	scavenged	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	37	4	52862081	52862081	+	Silent	SNP	C	C	T	rs367551436		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	241	4	161	0	0.0165975	0	.	.	weak	LRRC66,NS,carcinoma,-2,1	LRRC66	128	1	NM_001024611	exon4	c.G1107A	p.E369E	AGCGTCCTCTTTT	.	scavenged	Atlas-SNP
YOD1	55432	hgsc.bcm.edu	37	1	207222394	207222394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	180	4	118	0	0.0222222	0	.	.	none	YOD1,NS,carcinoma,+2,2	YOD1	24	2	NM_018566	exon2	c.A1018G	p.T340A	GGCCTGTCTCCTT	.	scavenged	Atlas-SNP
ECM1	1893	hgsc.bcm.edu	37	1	150483581	150483581	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	135	2	122	1	0.0148148	0.00819672	.	.	none	ECM1_ENST00000369049,colon,carcinoma,+1,2	ECM1	96	2	NM_001202858	exon6	c.C696T	p.R232R	CACTCGCCAGGGT	.	scavenged	Atlas-SNP
LILRA2	11027	hgsc.bcm.edu	37	19	55086932	55086932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	307	13	264	9	0.0423453	0.0340909	.	.	none	LILRA2,NS,carcinoma,0,1	LILRA2	99	1	NM_001130917	exon5	c.C865T	p.H289Y	CCCTCCCACGGGG	.	scavenged	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	37	16	3790471	3790471	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	143	5	116	0	0.034965	0	.	.	none	CREBBP,NS,carcinoma,-1,1	CREBBP	546	1	NM_004380	exon24	c.C4062T	p.A1354A	CTCCCCGGCTTCA	.	scavenged	Atlas-SNP
LGI3	203190	hgsc.bcm.edu	37	8	22005779	22005779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	47	8	62	1	0.170213	0.016129	.	.	none	LGI3,mouth,carcinoma,-1,1	LGI3	44	1	NM_139278	exon8	c.G1541A	p.R514Q	AAGGCCCGAGGAG	.	scavenged	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	37	11	17172170	17172170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	189	2	166	0	0.010582	0	.	.	none	PIK3C2A,NS,carcinoma,0,2	PIK3C2A	148	2	NM_002645	exon3	c.G1202A	p.R401H	TTTGTGCGGTGAT	.	scavenged	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	37	18	47462675	47462675	+	Silent	SNP	C	C	T	rs180849030	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	159	56	120	0	0.352201	0	C|0.999;T|0.001	0.001	strong	MYO5B,NS,carcinoma,0,1	MYO5B	178	1	NM_001080467	exon16	c.G1950A	p.T650T	AGGTGTCGTGGCA	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A	rs112083427	byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	45	8	37	3	0.177778	0.0810811	G|0.500;A|0.500	0.500	strong	TBP,NS,carcinoma,0,5	TBP	58	5	NM_003194	exon3	c.G228A	p.Q76Q	ACAGCAGCAGCAG	.	scavenged	Atlas-SNP
FAM64A	54478	hgsc.bcm.edu	37	17	6352690	6352690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	78	5	68	0	0.0641026	0	.	.	none	.	FAM64A	20	.	NM_019013	exon4	c.T649C	p.S217P	AAGCTGTCCCAAG	.	PASS	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	37	20	14665585	14665585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	139	51	140	0	0.366906	0	.	.	none	.	MACROD2	34	.	NM_080676	exon5	c.G398T	p.G133V	CATGTGGCTATGA	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28361877	28361877	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	194	2	160	0	0.0103093	0	.	.	none	HERC2,NS,carcinoma,0,1	HERC2	501	1	NM_004667	exon88	c.C13543A	p.R4515R	AGTCTCGGTTGGC	.	scavenged	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888050	52888050	+	Missense_Mutation	SNP	A	A	G	rs76053634	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	34	9	27	2	0.264706	0.0740741	A|0.867;G|0.133	0.133	strong	ZNF880,colon,carcinoma,0,2	ZNF880	45	2	NM_001145434	exon4	c.A1217G	p.Q406R	GAGAGCAACCTTA	.	scavenged	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386300	7386300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	111	6	93	6	0.0540541	0.0645161	.	.	none	POLR2A_ENST00000412468,NS,carcinoma,-1,1	.	.	1	NM_001102614	exon2	c.G997A	p.E333K	GAGAGGGAAGGGA	.	scavenged	Atlas-SNP
CLK3	1198	hgsc.bcm.edu	37	15	74912467	74912467	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	196	4	143	0	0.0204082	0	.	.	none	CLK3_ENST00000454830,NS,carcinoma,+1,4	CLK3	78	4	NM_001130028	exon3	c.T714C	p.R238R	TTCTCGTCATCGT	.	scavenged	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	37	3	66432748	66432748	+	Missense_Mutation	SNP	C	C	G	rs147267806	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	146	39	139	0	0.267123	0	C|1.000;T|0.000	.	alt	.	LRIG1	138	.	NM_015541	exon16	c.G2566C	p.V856L	TGACCACGGTTTC	.	PASS	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	37	18	14542888	14542888	+	Silent	SNP	A	A	G	rs8040506	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	384	12	344	3	0.03125	0.00872093	.	.	weak	POTEC,NS,carcinoma,-2,1	POTEC	129	1	NM_001137671	exon1	c.T258C	p.H86H	GTTGTCATGGTCT	.	scavenged	Atlas-SNP
CYP4A11	1579	hgsc.bcm.edu	37	1	47395874	47395874	+	Missense_Mutation	SNP	A	A	C	rs45475502		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	274	3	206	1	0.0109489	0.00485437	.	.	weak	CYP4A11,NS,carcinoma,0,1	CYP4A11	77	1	NM_000778	exon12	c.T1473G	p.I491M	TCGTGCAATGGGG	.	scavenged	Atlas-SNP
MAPKAPK5	8550	hgsc.bcm.edu	37	12	112318333	112318333	+	Splice_Site	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	89	3	79	1	0.0337079	0.0126582	.	.	none	MAPKAPK5,NS,carcinoma,0,1	MAPKAPK5	56	1	NM_139078	exon8	c.660+2T>A	.	ACAAGGTACAGGA	.	scavenged	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	37	4	128804641	128804641	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	71	3	88	0	0.0422535	0	.	.	none	PLK4,NS,carcinoma,+1,1	PLK4	65	1	NM_014264	exon4	c.A270G	p.E90E	ATTAGAAATGTGC	.	scavenged	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	37	12	14577330	14577330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	279	5	222	3	0.0179211	0.0135135	.	.	none	ATF7IP,NS,carcinoma,-1,1	ATF7IP	136	1	NM_018179	exon2	c.T481C	p.S161P	CCCACCTCTAGCG	.	scavenged	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112616820	112616820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	133	2	117	0	0.0150376	0	.	.	none	C12orf51_ENST00000377560,NS,carcinoma,+2,2	.	.	2	NM_001109662	exon64	c.G10876A	p.E3626K	GCTGCTCCTTCCC	.	scavenged	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57971203	57971203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	259	6	226	6	0.023166	0.0265487	.	.	none	OR1S2,NS,carcinoma,0,3	OR1S2	119	3	NM_001004459	exon1	c.G451C	p.A151P	ACCTGGCCCGCAT	.	scavenged	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982271	240982271	+	Silent	SNP	G	G	A	rs76841013	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	64	14	79	2	0.21875	0.0253165	G|0.755;A|0.245	0.245	strong	PRR21,NS,lymphoid_neoplasm,0,4	PRR21	53	4	NM_001080835	exon1	c.C129T	p.H43H	AGAGCCGTGGATG	.	scavenged	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	37	19	4512945	4512945	+	Missense_Mutation	SNP	C	C	T	rs75031432	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	415	10	329	3	0.0240964	0.00911854	C|0.826;T|0.174	0.174	strong	PLIN4_ENST00000301286,NS,carcinoma,0,2	PLIN4	191	2	NM_001080400	exon3	c.G985A	p.G329S	TGGCACCAGTCAC	.	scavenged	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47873941	47873941	+	Missense_Mutation	SNP	C	C	T	rs17131834	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	81	4	81	0	0.0493827	0	C|0.978;T|0.022	0.022	strong	.	PKD1L1	328	.	NM_138295	exon40	c.G6170A	p.R2057H	ACCTTGCGTGGCT	.	PASS	Atlas-SNP
ZC3HAV1	56829	hgsc.bcm.edu	37	7	138732496	138732496	+	Silent	SNP	A	A	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	95	2	94	0	0.0210526	0	.	.	none	ZC3HAV1,colon,carcinoma,0,1	ZC3HAV1	75	1	NM_020119	exon13	c.T2553G	p.T851T	TCCTTCAGTAAAC	.	scavenged	Atlas-SNP
GALNT6	11226	hgsc.bcm.edu	37	12	51754559	51754559	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	132	4	113	0	0.030303	0	.	.	none	GALNT6,colon,NS,-2,1	GALNT6	63	1	NM_007210	exon7	c.C1113A	p.T371T	ATCATAGGTACCG	.	scavenged	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	37	21	10971306	10971306	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	124	15	105	0	0.120968	0	.	.	none	.	TPTE	513	.	NM_199259	exon5	c.C51T	p.L17L	GGGGCCGAGCTCA	.	PASS	Atlas-SNP
CDS2	8760	hgsc.bcm.edu	37	20	5157301	5157301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	159	4	153	0	0.0251572	0	.	.	none	CDS2,caecum,carcinoma,-1,1	CDS2	27	1	NM_003818	exon4	c.G299A	p.C100Y	TGATGTGCGTTCA	.	scavenged	Atlas-SNP
ACP1	52	hgsc.bcm.edu	37	2	277273	277273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	208	4	214	0	0.0192308	0	.	.	none	ACP1_ENST00000272067,colon,carcinoma,-1,2	ACP1	42	2	NM_007099	exon6	c.G446A	p.C149Y	TCAGGTGCTGCAG	.	scavenged	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	48	3	40	0	0.0625	0	.	.	alt	MUC2_ENST00000441003,rectum,carcinoma,0,2	MUC2	614	2	NM_002457	exon30	c.C5114T	p.T1705I	CCACCACTACGGT	.	scavenged	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	37	14	58910793	58910793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	365	4	349	0	0.0109589	0	.	.	none	KIAA0586_ENST00000261244,colon,carcinoma,-1,2	KIAA0586	180	2	NM_001244189	exon8	c.A866G	p.E289G	AACAAGAGAAATT	.	scavenged	Atlas-SNP
PPAPDC3	84814	hgsc.bcm.edu	37	9	134165636	134165636	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	140	3	165	1	0.0214286	0.00606061	.	.	none	PPAPDC3,NS,carcinoma,0,1	PPAPDC3	24	1	NM_032728	exon1	c.C252T	p.S84S	CAACTCCCTGCTG	.	scavenged	Atlas-SNP
KCNA1	3736	hgsc.bcm.edu	37	12	5021624	5021624	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	212	5	188	0	0.0235849	0	.	.	none	KCNA1,NS,carcinoma,0,3	KCNA1	112	3	NM_000217	exon2	c.C1080T	p.P360P	TATCCCCGATGCT	.	scavenged	Atlas-SNP
XPOT	11260	hgsc.bcm.edu	37	12	64812728	64812728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	228	6	197	0	0.0263158	0	.	.	none	XPOT,bladder,carcinoma,0,3	XPOT	105	3	NM_007235	exon6	c.A343G	p.T115A	TTTGTTACAGAGT	.	scavenged	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	37	18	45566798	45566798	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	171	63	145	0	0.368421	0	.	.	none	.	ZBTB7C	73	.	NM_001039360	exon2	c.C681T	p.I227I	AGATTCGATGGAG	.	PASS	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	37	15	50901921	50901921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	89	2	77	1	0.0224719	0.012987	.	.	none	TRPM7,NS,other,+2,1	TRPM7	145	1	NM_017672	exon19	c.G2437A	p.E813K	ACACTTCCTAAAA	.	scavenged	Atlas-SNP
GPR37L1	9283	hgsc.bcm.edu	37	1	202097123	202097123	+	Silent	SNP	C	C	T	rs144820477	byfrequency;alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	147	3	127	0	0.0204082	0	C|1.000;G|0.000	.	alt	GPR37L1,NS,carcinoma,0,1	GPR37L1	33	1	NM_004767	exon2	c.C885T	p.P295P	CCTGCCCGAGTCC	.	scavenged	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	37	5	52351856	52351856	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	102	5	79	0	0.0490196	0	.	.	none	.	ITGA2	211	.	NM_002203	exon9	c.T973C	p.L325L	AAAAATTTAATAA	.	PASS	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	222	3	203	1	0.0135135	0.00492611	.	.	weak	PABPC1,NS,carcinoma,0,2	PABPC1	76	2	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	scavenged	Atlas-SNP
PCDHB4	56131	hgsc.bcm.edu	37	5	140502487	140502487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	76	2	82	0	0.0263158	0	.	.	none	PCDHB4,NS,carcinoma,-2,1	PCDHB4	177	1	NM_018938	exon1	c.A907G	p.K303E	CTGTTGAAAAAAA	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750625	128750625	+	Missense_Mutation	SNP	G	G	C	rs121918684		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	74	25	71	0	0.337838	0	.	.	weak	MYC_ENST00000377970,NS,lymphoid_neoplasm,0,8	MYC	168	8	NM_002467	exon2	c.G162C	p.E54D	GAGCGAGCTGCAG	.	PASS	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	37	4	71347240	71347240	+	Missense_Mutation	SNP	T	T	C	rs145745951		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	468	37	331	27	0.0790598	0.081571	.	.	weak	MUC7,extremity,malignant_melanoma,0,2	MUC7	91	2	NM_001145007	exon4	c.T779C	p.V260A	CAGCTGTCCCACC	.	scavenged	Atlas-SNP
MTRNR2L7	100288485	hgsc.bcm.edu	37	10	37890955	37890955	+	Silent	SNP	G	G	A	rs2180706	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	9	6	1	0	0.666667	0	G|0.434;A|0.566	0.566	strong	.	.	.	.	NM_001190489	exon1	c.C18T	p.F6F	GCAGCCGAACCCT	.	PASS	Atlas-SNP
KCNC2	3747	hgsc.bcm.edu	37	12	75444965	75444965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	182	3	157	0	0.0164835	0	.	.	none	KCNC2_ENST00000549446,NS,carcinoma,0,2	KCNC2	239	2	NM_139137	exon3	c.T820C	p.Y274H	TTTCATACTGTAG	.	scavenged	Atlas-SNP
ASIC5	51802	hgsc.bcm.edu	37	4	156784634	156784634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	96	4	86	0	0.0416667	0	.	.	none	.	.	.	.	NM_017419	exon2	c.G313A	p.E105K	GGAACTCCATCTT	.	PASS	Atlas-SNP
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907275	12907275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	169	5	186	1	0.0295858	0.00537634	.	.	none	HNRNPCL1,NS,neuroblastoma,0,1	HNRNPCL1	68	1	NM_001013631	exon2	c.C868G	p.Q290E	CATCCTGGCCATT	.	scavenged	Atlas-SNP
MTMR7	9108	hgsc.bcm.edu	37	8	17206499	17206499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	71	3	58	0	0.0422535	0	.	.	none	MTMR7,NS,carcinoma,0,1	MTMR7	75	1	NM_004686	exon5	c.G560A	p.R187Q	GGAAATCGCCGTC	.	scavenged	Atlas-SNP
UGT1A3	54659	hgsc.bcm.edu	37	2	234638186	234638186	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	294	3	274	0	0.0102041	0	.	.	none	UGT1A3,NS,carcinoma,0,1	UGT1A3	91	1	NM_019093	exon1	c.C414T	p.I138I	CCTGATCAGGCAC	.	scavenged	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	37	8	145738768	145738768	+	Splice_Site	SNP	G	G	C	rs199605511	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	95	11	117	0	0.115789	0	.	.	weak	.	RECQL4	75	.	NM_004260	exon15	c.2296+1C>G	.	CCACCCGGCAACT	.	PASS	Atlas-SNP
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124688	26124688	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	265	59	276	0	0.222642	0	.	.	none	.	HIST1H2AC	29	.	NM_003512	exon1	c.G228A	p.K76K	CAAGAAGACTCGC	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189387	11189387	+	Missense_Mutation	SNP	G	G	A	rs71360892		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	280	4	233	1	0.0142857	0.00429185	A|1.000;|0.000	1.000	weak	AMAC1L2,trunk,malignant_melanoma,0,1	.	.	1	NM_054028	exon1	c.G772A	p.A258T	GTGGGGGCAGAGG	.	scavenged	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	37	1	156941496	156941496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	61	17	68	0	0.278689	0	.	.	none	.	ARHGEF11	168	.	NM_198236	exon8	c.G695T	p.G232V	ACTGAGCCACCAG	.	PASS	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	37	8	70585453	70585453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	62	2	76	1	0.0322581	0.0131579	.	.	none	SLCO5A1,colon,carcinoma,0,1	SLCO5A1	142	1	NM_030958	exon10	c.C2198T	p.S733L	CGAAACGACGTCA	.	scavenged	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	37	1	145528314	145528314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	235	63	199	0	0.268085	0	.	.	none	.	ITGA10	131	.	NM_003637	exon4	c.T335A	p.L112Q	TGTCTCTGTTAGA	.	PASS	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G	rs372894655		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	48	10	35	1	0.208333	0.0285714	.	.	weak	MLLT3,bladder,carcinoma,0,25	MLLT3	125	25	NM_004529	exon5	c.T501C	p.S167S	GCTGCTACTGCTG	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128752907	128752907	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	144	56	124	0	0.388889	0	.	.	none	.	MYC	168	.	NM_002467	exon3	c.A1068G	p.K356K	CCGAAAATGCACC	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871058	170871058	+	Silent	SNP	G	G	A	rs113440919		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	48	7	39	3	0.145833	0.0769231	G|0.500;A|0.500	0.500	weak	TBP,caecum,carcinoma,0,1	TBP	58	1	NM_003194	exon3	c.G234A	p.Q78Q	GCAGCAGCAGCAG	.	scavenged	Atlas-SNP
SPATA22	84690	hgsc.bcm.edu	37	17	3352179	3352179	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	348	4	270	0	0.0114943	0	.	.	none	SPATA22,NS,carcinoma,0,1	SPATA22	49	1	NM_032598	exon6	c.G594A	p.Q198Q	AAGTGTCTGTAGT	.	scavenged	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100680438	100680438	+	Missense_Mutation	SNP	G	G	C	rs112926140	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	97	7	80	1	0.0721649	0.0125	A|0.001;G|0.999	.	strong	MUC17,right_upper_lobe,carcinoma,+1,1	MUC17	804	1	NM_001040105	exon3	c.G5741C	p.S1914T	ACGGTAGCAGCAT	.	scavenged	Atlas-SNP
SP140	11262	hgsc.bcm.edu	37	2	231135324	231135324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	285	5	224	0	0.0175439	0	.	.	none	SP140_ENST00000392045,NS,carcinoma,-1,1	SP140	121	1	NM_007237	exon15	c.T1468C	p.S490P	AACAACTCCACTT	.	scavenged	Atlas-SNP
TNS4	84951	hgsc.bcm.edu	37	17	38635982	38635982	+	Silent	SNP	G	G	T	rs150152835	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	112	2	113	0	0.0178571	0	G|1.000;A|0.000	.	alt	TNS4,NS,carcinoma,0,1	TNS4	72	1	NM_032865	exon10	c.C1854A	p.T618T	GACCACGGTGGGC	.	scavenged	Atlas-SNP
MAPK8	5599	hgsc.bcm.edu	37	10	49618087	49618087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	154	7	144	0	0.0454545	0	.	.	none	.	MAPK8	118	.	NM_139047	exon4	c.A326G	p.E109G	TCATGGAGCTCAT	.	PASS	Atlas-SNP
TMEM63B	55362	hgsc.bcm.edu	37	6	44116674	44116674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	177	4	154	0	0.0225989	0	.	.	none	TMEM63B,NS,carcinoma,-1,1	TMEM63B	77	1	NM_018426	exon15	c.T1405C	p.Y469H	GTGGAGTACCTCA	.	scavenged	Atlas-SNP
ACSM1	116285	hgsc.bcm.edu	37	16	20681297	20681297	+	Missense_Mutation	SNP	C	C	A	rs138822345	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	239	3	209	0	0.0125523	0	C|1.000;T|0.000	.	alt	ACSM1,NS,malignant_melanoma,0,1	ACSM1	118	1	NM_052956	exon5	c.G764T	p.R255L	AGGCTCCGTAATT	.	scavenged	Atlas-SNP
CCDC69	26112	hgsc.bcm.edu	37	5	150565026	150565026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	140	4	104	0	0.0285714	0	.	.	none	CCDC69,NS,carcinoma,0,1	CCDC69	30	1	NM_015621	exon7	c.G572A	p.R191H	TGAATACGCTCAT	.	scavenged	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	37	5	115351066	115351066	+	Silent	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	45	3	46	2	0.0666667	0.0434783	.	.	none	FLJ90650,caecum,carcinoma,0,1	.	.	1	NM_173800	exon17	c.T2568A	p.I856I	AAAGATTCAACTT	.	scavenged	Atlas-SNP
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	103	8	96	3	0.0776699	0.03125	.	.	weak	C14orf126,third_ventricle,glioma,0,2	.	.	2	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	scavenged	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414310	20414310	+	Silent	SNP	A	A	G	rs148318848	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	82	10	74	2	0.121951	0.027027	.	.	weak	MLLT3,caecum,carcinoma,0,1	MLLT3	125	1	NM_004529	exon5	c.T534C	p.S178S	GCTGCTACTGCTG	.	scavenged	Atlas-SNP
SPRR2D	6703	hgsc.bcm.edu	37	1	153012612	153012612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	509	6	450	0	0.0117878	0	.	.	none	SPRR2D,colon,carcinoma,+1,1	SPRR2D	9	1	NM_006945	exon2	c.A211G	p.S71G	ACTTGCTCTTGGG	.	scavenged	Atlas-SNP
PSD	5662	hgsc.bcm.edu	37	10	104165236	104165236	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	105	2	120	0	0.0190476	0	.	.	none	PSD_ENST00000020673,NS,carcinoma,-1,2	PSD	164	2	NM_001270965	exon13	c.C2193T	p.V731V	CTTGATGACCTTG	.	scavenged	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	37	1	241951199	241951199	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	393	4	321	0	0.0101781	0	.	.	none	WDR64_ENST00000366552,NS,carcinoma,+2,2	WDR64	234	2	NM_144625	exon23	c.A2724G	p.R908R	ACAGCGAAGGCTC	.	scavenged	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	37	13	42888041	42888041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	206	3	125	0	0.0145631	0	.	.	none	AKAP11,trunk,malignant_melanoma,+1,1	AKAP11	146	1	NM_016248	exon11	c.A5369G	p.D1790G	GACCAGATGATAA	.	scavenged	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	37	4	48990495	48990495	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	66	4	40	0	0.0606061	0	.	.	none	.	CWH43	101	.	NM_025087	exon2	c.A45G	p.G15G	TGTAGGATGTGTT	.	PASS	Atlas-SNP
TIMP2	7077	hgsc.bcm.edu	37	17	76869909	76869909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	121	3	80	0	0.0247934	0	.	.	none	TIMP2_ENST00000262768,NS,neuroblastoma,0,1	TIMP2	27	1	NM_003255	exon2	c.C223A	p.Q75K	TTATCTGCTTGAT	.	scavenged	Atlas-SNP
CWF19L2	143884	hgsc.bcm.edu	37	11	107197725	107197725	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	90	2	110	0	0.0222222	0	.	.	none	CWF19L2_ENST00000282251,NS,carcinoma,+2,2	CWF19L2	135	2	NM_152434	exon18	c.C2596T	p.R866X	TTTCTCGGATGCC	.	scavenged	Atlas-SNP
ARHGEF5	7984	hgsc.bcm.edu	37	7	144061222	144061222	+	Missense_Mutation	SNP	A	A	G	rs201805873	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	183	19	189	13	0.103825	0.0687831	.	.	weak	ARHGEF5,NS,carcinoma,0,5	ARHGEF5	73	5	NM_005435	exon2	c.A1460G	p.E487G	AAGAGGAATCCAG	.	scavenged	Atlas-SNP
CASP8	841	hgsc.bcm.edu	37	2	202141597	202141597	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	224	16	173	0	0.0714286	0	.	.	none	CASP8_ENST00000358485,NS,carcinoma,+1,3	CASP8	272	3	NM_001080125	exon7	c.T885A	p.C295X	ATACTGTCTGATC	.	PASS	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53854856	53854856	+	Silent	SNP	C	C	A	rs372054990	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	73	2	67	0	0.0273973	0	.	.	alt	ZNF845,colon,carcinoma,0,1	ZNF845	101	1	NM_138374	exon4	c.C928A	p.R310R	TTCAGTCGAAATT	.	scavenged	Atlas-SNP
FAM83D	81610	hgsc.bcm.edu	37	20	37555116	37555116	+	Missense_Mutation	SNP	G	G	C	rs3752290	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	17	4	19	1	0.235294	0.0526316	G|0.618;C|0.382	0.382	strong	FAM83D,NS,carcinoma,0,2	FAM83D	60	2	NM_030919	exon1	c.G121C	p.V41L	GACGAGGTGCCCG	.	scavenged	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	37	1	117158772	117158772	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	357	10	373	3	0.0280112	0.0080429	.	.	none	IGSF3_ENST00000369483,NS,carcinoma,0,2	IGSF3	294	2	NM_001542	exon3	c.G351A	p.E117E	TTCATACTCCCCG	.	scavenged	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123094241	123094241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	153	3	163	0	0.0196078	0	.	.	none	KIAA1109,NS,carcinoma,-1,1	KIAA1109	424	1	NM_015312	exon2	c.C148T	p.R50W	AATTCCCGGAATG	.	scavenged	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	37	4	175899088	175899088	+	Missense_Mutation	SNP	G	G	T	rs146933346	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	94	14	75	5	0.148936	0.0666667	C|0.001;G|0.998;T|0.001	0.001	weak	ADAM29,NS,lymphoid_neoplasm,0,1	ADAM29	262	1	NM_001130703	exon4	c.G2412T	p.R804S	CCAGAGGCAACCT	.	scavenged	Atlas-SNP
TRPC4AP	26133	hgsc.bcm.edu	37	20	33645345	33645345	+	Silent	SNP	C	C	T	rs150179620		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	113	2	118	2	0.0176991	0.0169492	C|1.000;T|0.000	0.000	weak	TRPC4AP,NS,carcinoma,0,1	TRPC4AP	64	1	NM_199368	exon4	c.G444A	p.T148T	AGAGATCGTAGGC	.	scavenged	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	37	11	71249558	71249558	+	Missense_Mutation	SNP	T	T	A	rs374587723		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	133	5	122	1	0.037594	0.00819672	.	.	weak	KRTAP5-8,NS,carcinoma,0,1	KRTAP5-8	28	1	NM_021046	exon1	c.T457A	p.C153S	CCCTGCTGCTGCT	.	scavenged	Atlas-SNP
TPPP	11076	hgsc.bcm.edu	37	5	678087	678087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	244	6	320	10	0.0245902	0.03125	.	.	none	TPPP,NS,carcinoma,0,1	TPPP	24	1	NM_007030	exon2	c.G89A	p.R30K	GACAGCCTCTTGG	.	scavenged	Atlas-SNP
REG3A	5068	hgsc.bcm.edu	37	2	79385481	79385481	+	Missense_Mutation	SNP	C	C	T	rs199992892	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	235	7	198	3	0.0297872	0.0151515	C|0.943;T|0.057	0.057	strong	REG3A,colon,carcinoma,0,1	REG3A	76	1	NM_138938	exon3	c.G304A	p.V102I	TCCAGACGTATGA	.	scavenged	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152737804	152737804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	268	3	251	0	0.011194	0	.	.	none	SYNE1_ENST00000423061,NS,carcinoma,+1,3	SYNE1	3227	3	NM_033071	exon41	c.C5789T	p.A1930V	CTGACGGCAGCAG	.	scavenged	Atlas-SNP
PRKD3	23683	hgsc.bcm.edu	37	2	37513463	37513463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	132	2	132	0	0.0151515	0	.	.	none	PRKD3_ENST00000379066,NS,carcinoma,0,2	PRKD3	170	2	NM_005813	exon5	c.G767A	p.R256H	ATTGGGCGACCAC	.	scavenged	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	37	16	2025604	2025604	+	Missense_Mutation	SNP	G	G	C	rs8052713	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	7	3	16	3	0.428571	0.1875	G|0.921;C|0.079	0.079	strong	TBL3,NS,carcinoma,0,1	TBL3	54	1	NM_006453	exon10	c.G880C	p.E294Q	GGGCAGGAGCTGA	.	scavenged	Atlas-SNP
ZNF484	83744	hgsc.bcm.edu	37	9	95610230	95610230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	301	5	173	0	0.0166113	0	.	.	none	ZNF484,NS,carcinoma,-1,1	ZNF484	81	1	NM_001261458	exon4	c.A845G	p.E282G	TGGCATTCATGCT	.	scavenged	Atlas-SNP
CEP41	95681	hgsc.bcm.edu	37	7	130067800	130067800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	64	25	66	0	0.390625	0	.	.	none	.	.	.	.	NM_001257159	exon2	c.C93A	p.D31E	ACCAGTGTCCAGT	.	PASS	Atlas-SNP
ZNF438	220929	hgsc.bcm.edu	37	10	31137635	31137635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	237	60	202	0	0.253165	0	.	.	none	.	ZNF438	90	.	NM_182755	exon7	c.A1699C	p.M567L	AACACATGAGTTT	.	PASS	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	37	18	64178881	64178881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	201	3	157	0	0.0149254	0	.	.	none	CDH19,NS,carcinoma,0,1	CDH19	141	1	NM_021153	exon10	c.A1500G	p.I500M	CTCTTCTATGGAT	.	scavenged	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	100	9	81	6	0.09	0.0740741	.	.	none	MUC2_ENST00000441003,NS,carcinoma,0,6	MUC2	614	6	NM_002457	exon30	c.G4729A	p.G1577S	CCCACCGGCACAC	.	scavenged	Atlas-SNP
CHIT1	1118	hgsc.bcm.edu	37	1	203186088	203186088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	54	11	55	0	0.203704	0	.	.	none	CHIT1,NS,carcinoma,+2,1	CHIT1	61	1	NM_003465	exon11	c.C1330T	p.R444W	ACAGCCGCCCCGC	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190878658	190878658	+	Splice_Site	SNP	G	G	A	rs76810924		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	561	15	482	7	0.026738	0.0145228	G|0.875;A|0.125	0.125	weak	FRG1,right_upper_lobe,carcinoma,0,1	FRG1	76	1	NM_004477	exon6	c.537+1G>A	.	ATCAAGGTAATGA	.	scavenged	Atlas-SNP
MITF	4286	hgsc.bcm.edu	37	3	69928321	69928321	+	Silent	SNP	G	G	A	rs199697494	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	93	30	107	0	0.322581	0	G|1.000;A|0.000	0.000	strong	.	MITF	156	.	NM_198159	exon2	c.G141A	p.P47P	GCCTCCGATAAGC	.	PASS	Atlas-SNP
KIAA0430	9665	hgsc.bcm.edu	37	16	15719020	15719020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	124	4	102	1	0.0322581	0.00980392	.	.	none	KIAA0430,caecum,carcinoma,0,1	KIAA0430	154	1	NM_014647	exon9	c.G1964A	p.R655H	TCCATGCGGCACA	.	scavenged	Atlas-SNP
OR4D1	26689	hgsc.bcm.edu	37	17	56232809	56232809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	94	2	92	0	0.0212766	0	.	.	none	OR4D1,NS,carcinoma,0,1	OR4D1	48	1	NM_012374	exon1	c.G295A	p.A99T	TGCATGGCCCAGA	.	scavenged	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53207583	53207583	+	Missense_Mutation	SNP	C	C	G	rs76773498	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	67	7	44	0	0.104478	0	.	.	weak	KRT4,rectum,carcinoma,+1,2	KRT4	110	2	NM_002272	exon1	c.G260C	p.G87A	AATCCACCACCAA	.	scavenged	Atlas-SNP
SEPT5	5413	hgsc.bcm.edu	37	22	19709201	19709201	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	108	5	104	0	0.0462963	0	.	.	none	.	SEPT5	32	.	NM_001009939	exon8	c.G783T	p.V261V	CACGGTGGTGGAG	.	PASS	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	37	16	3078165	3078165	+	Missense_Mutation	SNP	A	A	G	rs12448103	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	8	8	1	1	1	1	A|0.823;G|0.177	0.177	strong	CCDC64B,NS,carcinoma,0,1	CCDC64B	19	1	NM_001103175	exon9	c.T1469C	p.L490P	AGGCGCAGCGAGA	.	scavenged	Atlas-SNP
PCBP3	54039	hgsc.bcm.edu	37	21	47319531	47319531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	109	3	115	0	0.0275229	0	.	.	none	PCBP3_ENST00000400314,NS,carcinoma,-2,2	PCBP3	82	2	NM_001130141	exon3	c.G184A	p.G62R	ATCATCGGGAAGG	.	scavenged	Atlas-SNP
ZNF443	10224	hgsc.bcm.edu	37	19	12541141	12541141	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	182	4	193	1	0.021978	0.00518135	.	.	none	ZNF443,lower_third,carcinoma,-1,1	ZNF443	63	1	NM_005815	exon4	c.G1845A	p.P615P	TTCATACGGGTTC	.	scavenged	Atlas-SNP
CEP170	9859	hgsc.bcm.edu	37	1	243333027	243333027	+	Silent	SNP	A	A	G	rs34466343	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	595	13	505	2	0.0218487	0.0039604	.	.	weak	CEP170_ENST00000366543,NS,carcinoma,0,6	CEP170	153	6	NM_014812	exon12	c.T1746C	p.R582R	AACCCAACGTTTG	.	scavenged	Atlas-SNP
ALDOB	229	hgsc.bcm.edu	37	9	104189813	104189813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	125	27	105	0	0.216	0	.	.	none	.	ALDOB	69	.	NM_000035	exon5	c.T491C	p.I164T	TCCTGGATAGCGA	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	37	2	218713012	218713012	+	Missense_Mutation	SNP	C	C	T	rs199985548	bycluster;alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	135	2	110	0	0.0148148	0	.	.	alt	TNS1_ENST00000446903,NS,carcinoma,0,4	TNS1	251	4	NM_022648	exon17	c.G1853A	p.R618H	TGAGAGCGGAACA	.	scavenged	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	37	20	61835026	61835026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	120	3	110	0	0.025	0	.	.	none	YTHDF1,NS,carcinoma,+1,1	YTHDF1	66	1	NM_017798	exon4	c.A266G	p.Y89C	TGTCCGTAGGTGG	.	scavenged	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43258570	43258570	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	153	2	171	0	0.0130719	0	.	.	none	PSG8,right_lower_lobe,carcinoma,-1,1	PSG8	101	1	NM_001130167	exon5	c.A1158G	p.T386T	ATGCTTTGTAGTA	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128751021	128751021	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	59	16	65	0	0.271186	0	.	.	none	.	MYC	168	.	NM_002467	exon2	c.C558T	p.C186C	CGTCTGCTCCACC	.	PASS	Atlas-SNP
OR1D5	8386	hgsc.bcm.edu	37	17	2966828	2966828	+	Missense_Mutation	SNP	C	C	T	rs2258425	byfrequency;bysubmitter	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	199	6	124	1	0.0301508	0.00806452	C|0.250;T|0.750	0.750	strong	OR1D5_ENST00000575751,NS,carcinoma,0,2	OR1D5	33	2	NM_014566	exon1	c.G74A	p.R25Q	AGGATCCGCTGCT	.	scavenged	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	38	4	23	0	0.105263	0	.	.	none	RHPN2,face,carcinoma,0,2	RHPN2	107	2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC	.	scavenged	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982247	240982247	+	Silent	SNP	A	A	G	rs75044548	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	68	10	90	4	0.147059	0.0444444	A|0.813;G|0.187	0.187	strong	PRR21,NS,carcinoma,0,2	PRR21	53	2	NM_001080835	exon1	c.T153C	p.H51H	CCGTGGATGAAGG	.	scavenged	Atlas-SNP
FCRL3	115352	hgsc.bcm.edu	37	1	157668297	157668297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	340	6	316	1	0.0176471	0.00316456	.	.	none	FCRL3,NS,carcinoma,+2,1	FCRL3	163	1	NM_052939	exon4	c.T175C	p.Y59H	CGTGATACCAATA	.	scavenged	Atlas-SNP
RPL10L	140801	hgsc.bcm.edu	37	14	47120929	47120929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	96	3	71	0	0.03125	0	.	.	none	RPL10L,NS,carcinoma,-1,2	RPL10L	64	2	NM_080746	exon1	c.G11A	p.R4H	GCTGGACGGCGCC	.	scavenged	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240790	39240790	+	Missense_Mutation	SNP	G	G	A	rs11650261	bycluster;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	51	10	29	1	0.196078	0.0344828	G|0.932;A|0.068	0.068	strong	KRTAP4-9_ENST00000377734,NS,carcinoma,0,3	KRTAP4-7	49	3	NM_033061	exon1	c.G332A	p.R111H	GCTGCCGCCCCAG	.	scavenged	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	37	4	46305606	46305606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	183	3	147	0	0.0163934	0	.	.	none	GABRA2,NS,malignant_melanoma,0,1	GABRA2	134	1	NM_000807	exon8	c.C727T	p.H243Y	GGAAATGAGCTGT	.	scavenged	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	37	20	16021849	16021849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	93	4	77	0	0.0430108	0	.	.	none	.	MACROD2	34	.	NM_080676	exon16	c.C1157T	p.P386L	CAGCTCCAGGCGA	.	PASS	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	37	11	71249545	71249545	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	133	4	120	1	0.0300752	0.00833333	.	.	none	KRTAP5-8,NS,carcinoma,0,1	KRTAP5-8	28	1	NM_021046	exon1	c.C444T	p.C148C	CAGCTGCTGTAAG	.	scavenged	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152432215	152432215	+	Silent	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	159	52	135	0	0.327044	0	.	.	none	.	NEB	1697	.	NM_001271208	exon107	c.G17007T	p.V5669V	ATTGCTCACATTA	.	PASS	Atlas-SNP
TPP1	1200	hgsc.bcm.edu	37	11	6636488	6636488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	202	2	179	0	0.00990099	0	.	.	none	TPP1,colon,carcinoma,+1,1	TPP1	71	1	NM_000391	exon11	c.C1339T	p.R447C	AGGCACGGCCACT	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017974	1017974	+	Missense_Mutation	SNP	C	C	G	rs200353019	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	544	11	506	9	0.0202206	0.0177866	.	.	weak	MUC6_ENST00000421673,colon,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.G4827C	p.Q1609H	TGTGGTCTGAGGG	.	scavenged	Atlas-SNP
RFPL3	10738	hgsc.bcm.edu	37	22	32754250	32754250	+	Silent	SNP	C	C	T	rs376474772		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	331	9	251	4	0.0271903	0.0159363	.	.	weak	RFPL3_ENST00000249007,NS,carcinoma,+2,2	RFPL3	91	2	NM_001098535	exon1	c.C192T	p.I64I	GTGCATCAATTCG	.	scavenged	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194930	28194930	+	Silent	SNP	C	C	T	rs45463091	byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	36	3	41	1	0.0833333	0.0243902	C|0.958;T|0.042	0.042	strong	MN1,colon,carcinoma,0,4	MN1	122	4	NM_002430	exon1	c.G1602A	p.Q534Q	CTGCTGCTGTTGC	.	scavenged	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170627767	170627767	+	Missense_Mutation	SNP	A	A	G	rs6900202	bycluster;by2hit2allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	113	10	88	6	0.0884956	0.0681818	A|1.000;|0.000	.	weak	FAM120B,NS,carcinoma,0,1	FAM120B	108	1	NM_032448	exon2	c.A1289G	p.D430G	ATACAGACTCTGA	.	scavenged	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	37	2	38976739	38976739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	280	91	295	0	0.325	0	.	.	none	.	SRSF7	29	.	NM_001195446	exon3	c.C318G	p.C106W	CTCATAGCATCTA	.	PASS	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	37	20	45853094	45853094	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	149	2	143	0	0.0134228	0	.	.	none	ZMYND8,NS,carcinoma,-2,1	ZMYND8	166	1	NM_183047	exon19	c.G2994A	p.K998K	CTGCTTCTTCTTG	.	scavenged	Atlas-SNP
KRTAP26-1	388818	hgsc.bcm.edu	37	21	31692282	31692282	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	157	57	165	0	0.363057	0	.	.	none	KRTAP26-1,NS,carcinoma,0,1	KRTAP26-1	58	1	NM_203405	exon1	c.C72A	p.L24L	GGAGGTGAGAGGA	.	PASS	Atlas-SNP
DYNC1I2	1781	hgsc.bcm.edu	37	2	172585298	172585298	+	Silent	SNP	T	T	C	rs78255103	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	427	14	344	6	0.0327869	0.0174419	T|0.333;C|0.667	0.667	strong	DYNC1I2,NS,carcinoma,0,1	DYNC1I2	43	1	NM_001378	exon14	c.T1329C	p.D443D	TGGAGATGTCAAC	.	scavenged	Atlas-SNP
REG3A	5068	hgsc.bcm.edu	37	2	79385499	79385499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	263	10	217	3	0.0380228	0.0138249	.	.	none	REG3A,NS,carcinoma,+1,1	REG3A	76	1	NM_138938	exon3	c.G286A	p.G96S	TGTTACCAATGCT	.	scavenged	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	37	12	52200868	52200868	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	105	2	89	0	0.0190476	0	.	.	none	SCN8A_ENST00000354534,NS,carcinoma,+2,4	SCN8A	331	4	NM_014191	exon27	c.G5598T	p.R1866R	CCTGCGGCAGCAG	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017316	1017316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	783	29	742	23	0.037037	0.0309973	.	.	none	MUC6_ENST00000421673,right_upper_lobe,carcinoma,+1,2	MUC6	408	2	NM_005961	exon31	c.C5485A	p.P1829T	GTGATGGGGTTGG	.	scavenged	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4681129	4681129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	93	25	92	0	0.268817	0	.	.	none	.	ITPR1	659	.	NM_001099952	exon6	c.T341C	p.V114A	GGACCGTAATCCA	.	PASS	Atlas-SNP
OR11H4	390442	hgsc.bcm.edu	37	14	20711205	20711205	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	296	3	309	0	0.0101351	0	.	.	none	OR11H4,rectum,carcinoma,0,7	OR11H4	63	7	NM_001004479	exon1	c.C255T	p.S85S	TGTGTCCTCCACT	.	scavenged	Atlas-SNP
FRMD3	257019	hgsc.bcm.edu	37	9	85863362	85863362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	68	25	65	0	0.367647	0	.	.	none	FRMD3,NS,carcinoma,+1,1	FRMD3	96	1	NM_174938	exon14	c.G1265A	p.R422Q	TACTCCCGGGCTG	.	PASS	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	37	4	175899079	175899079	+	Silent	SNP	C	C	T	rs151310201	byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	97	14	82	7	0.14433	0.0853659	C|0.986;T|0.013	0.013	strong	ADAM29,NS,carcinoma,0,1	ADAM29	262	1	NM_001130703	exon4	c.C2403T	p.P801P	GACACCCTCCCAG	.	scavenged	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	37	5	156479583	156479583	+	Silent	SNP	C	C	G	rs192652646	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	444	15	375	11	0.0337838	0.0293333	C|0.981;G|0.019	0.019	strong	HAVCR1,colon,carcinoma,-1,2	HAVCR1	84	2	NM_001099414	exon4	c.G462C	p.T154T	AACAGTCGTTGTC	.	scavenged	Atlas-SNP
TMEM30A	55754	hgsc.bcm.edu	37	6	75969072	75969072	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	140	51	199	0	0.364286	0	.	.	none	TMEM30A,caecum,carcinoma,0,2	TMEM30A	40	2	NM_018247	exon5	c.C676T	p.R226X	TAAATCGTTCTTC	.	PASS	Atlas-SNP
INSR	3643	hgsc.bcm.edu	37	19	7117070	7117070	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	57	2	40	0	0.0350877	0	.	.	none	INSR_ENST00000302850,right_upper_lobe,carcinoma,0,4	INSR	265	4	NM_000208	exon22	c.C4146T	p.S1382S	CTGTTAGGAAGGA	.	scavenged	Atlas-SNP
CASP8	841	hgsc.bcm.edu	37	2	202141586	202141586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	230	19	176	0	0.0826087	0	.	.	none	CASP8_ENST00000358485,NS,carcinoma,0,6	CASP8	272	6	NM_001080125	exon7	c.C874T	p.R292W	AAACCTCGGGGAT	.	PASS	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	37	11	84027956	84027956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	73	23	50	0	0.315068	0	.	.	none	.	DLG2	448	.	NM_001206769	exon1	c.G233A	p.R78Q	CTTTTCCGCACAC	.	PASS	Atlas-SNP
HYAL4	23553	hgsc.bcm.edu	37	7	123516863	123516863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	175	3	185	2	0.0171429	0.0108108	.	.	none	HYAL4,right_upper_lobe,carcinoma,-1,1	HYAL4	65	1	NM_012269	exon5	c.C1100T	p.A367V	ACATAGCCAATGT	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152286033	152286033	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	323	7	249	0	0.0216718	0	.	.	none	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.T1329C	p.A443A	CAGCCCAGCCTTT	.	scavenged	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	37	15	91835648	91835648	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	247	3	157	1	0.0121457	0.00636943	.	.	none	SV2B,colon,carcinoma,-1,1	SV2B	98	1	NM_014848	exon14	c.C1918T	p.L640L	GCCATCCTGGGAA	.	scavenged	Atlas-SNP
TMEM184A	202915	hgsc.bcm.edu	37	7	1590488	1590488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	62	4	62	0	0.0645161	0	.	.	none	.	TMEM184A	35	.	NM_001097620	exon3	c.A350G	p.Y117C	TAGACGTAGTACT	.	PASS	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	37	1	248224819	248224819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	184	7	121	1	0.0380435	0.00826446	.	.	none	OR2L3,NS,carcinoma,0,1	OR2L3	97	1	NM_001004687	exon1	c.C836T	p.T279I	ACACCACCCTCAC	.	scavenged	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240805	39240805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	44	7	33	4	0.159091	0.121212	.	.	none	KRTAP4-7,caecum,carcinoma,+1,1	KRTAP4-7	49	1	NM_033061	exon1	c.G347T	p.R116L	GCTGCCGCCCCTG	.	scavenged	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124398985	124398985	+	Missense_Mutation	SNP	C	C	T	rs369076491		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	99	2	107	0	0.020202	0	.	.	weak	DNAH10_same_name,NS,carcinoma,-1,2	DNAH10	888	2	NM_207437	exon60	c.C10108T	p.R3370C	GAGTTCCGTGACG	.	scavenged	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	37	11	12281376	12281376	+	Missense_Mutation	SNP	G	G	A	rs2270515	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	161	56	131	0	0.347826	0	G|0.994;A|0.006	0.006	strong	MICAL2,NS,carcinoma,+1,1	MICAL2	114	1	NM_014632	exon26	c.G3266A	p.R1089Q	CCCCTCGGAGAGA	.	PASS	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	37	4	47514734	47514734	+	Silent	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	127	4	118	0	0.0314961	0	.	.	none	ATP10D,right_upper_lobe,carcinoma,+1,1	ATP10D	168	1	NM_020453	exon2	c.C177A	p.P59P	CCAGCCCTTCAAG	.	scavenged	Atlas-SNP
KRTAP27-1	643812	hgsc.bcm.edu	37	21	31709734	31709734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	221	3	178	0	0.0135747	0	.	.	none	KRTAP27-1,colon,carcinoma,0,1	KRTAP27-1	53	1	NM_001077711	exon1	c.G253T	p.V85F	TTTGGACAACTCC	.	scavenged	Atlas-SNP
BCMO1	53630	hgsc.bcm.edu	37	16	81303828	81303828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	114	2	111	0	0.0175439	0	.	.	none	BCMO1,colon,carcinoma,+1,1	BCMO1	53	1	NM_017429	exon7	c.C908T	p.A303V	CAGACGCCATGGT	.	scavenged	Atlas-SNP
NANOG	79923	hgsc.bcm.edu	37	12	7947105	7947105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	488	6	478	0	0.0122951	0	.	.	none	NANOG,colon,carcinoma,0,1	NANOG	30	1	NM_024865	exon3	c.A467G	p.N156S	AGAAAAACAACTG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507062	195507062	+	Missense_Mutation	SNP	C	C	T	rs199822551	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	82	8	76	11	0.097561	0.144737	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.G11389A	p.D3797N	AAGTGTCGGTGAC	.	scavenged	Atlas-SNP
LGALS9B	284194	hgsc.bcm.edu	37	17	20354849	20354849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	482	2	425	1	0.00414938	0.00235294	.	.	none	LGALS9B,NS,carcinoma,0,1	LGALS9B	24	1	NM_001042685	exon10	c.C866T	p.S289F	TCCTCAGACCCCC	.	scavenged	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	37	15	48052516	48052516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	245	4	140	0	0.0163265	0	.	.	none	SEMA6D,colon,NS,0,1	SEMA6D	322	1	NM_153617	exon3	c.C125T	p.P42L	AATATCCGGTTTT	.	scavenged	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	37	15	75980270	75980270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	203	101	124	0	0.497537	0	.	.	none	.	CSPG4	175	.	NM_001897	exon3	c.G3136A	p.D1046N	CAGCATCGCTGAA	.	PASS	Atlas-SNP
ARID3C	138715	hgsc.bcm.edu	37	9	34623464	34623464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	143	4	181	1	0.027972	0.00552486	.	.	none	ARID3C,NS,carcinoma,+1,1	ARID3C	33	1	NM_001017363	exon4	c.G823A	p.A275T	CATGCGCTGGCAG	.	scavenged	Atlas-SNP
CCDC6	8030	hgsc.bcm.edu	37	10	61566690	61566690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	139	2	115	1	0.0143885	0.00869565	.	.	none	CCDC6,colon,carcinoma,+2,1	CCDC6	44	1	NM_005436	exon6	c.G994A	p.D332N	CGTCGTCCATTTC	.	scavenged	Atlas-SNP
IFITM3	10410	hgsc.bcm.edu	37	11	320723	320723	+	Missense_Mutation	SNP	C	C	T	rs56227617		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	116	12	78	2	0.103448	0.025641	.	.	weak	IFITM3,brain,glioma,0,1	IFITM3	132	1	NM_021034	exon1	c.G91A	p.V31M	CCAGCACAGCCAC	.	scavenged	Atlas-SNP
ZNF768	79724	hgsc.bcm.edu	37	16	30537049	30537049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	213	4	177	0	0.0187793	0	.	.	none	ZNF768,colon,carcinoma,0,1	ZNF768	28	1	NM_024671	exon2	c.C412T	p.R138W	GGCTCCGGGGTTC	.	scavenged	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	37	21	43248563	43248563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	146	4	148	1	0.0273973	0.00675676	.	.	none	PRDM15,NS,carcinoma,0,1	PRDM15	110	1	NM_022115	exon19	c.G2591A	p.R864H	TCCTTGCGGTAGA	.	scavenged	Atlas-SNP
UGT2B28	54490	hgsc.bcm.edu	37	4	70152481	70152481	+	Silent	SNP	A	A	G	rs141618560		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	175	7	138	0	0.04	0	A|1.000;G|0.000	0.000	weak	UGT2B28,NS,carcinoma,0,4	UGT2B28	101	4	NM_053039	exon3	c.A882G	p.E294E	GGAGGAATTTGTA	.	PASS	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	37	2	109382170	109382170	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	597	10	500	4	0.0167504	0.008	.	.	none	RANBP2_ENST00000283195,NS,carcinoma,0,6	RANBP2	488	6	NM_006267	exon20	c.A5175G	p.E1725E	GAAGGAAGGACAG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505774	195505774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	143	8	113	2	0.0559441	0.0176991	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C12677A	p.P4226H	GTGACAGGAAGAG	.	scavenged	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	37	19	3532490	3532490	+	Missense_Mutation	SNP	G	G	A	rs371550562		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	83	4	143	0	0.0481928	0	.	.	weak	.	FZR1	42	.	NM_001136198	exon10	c.G1084A	p.A362T	GCCATCGCCTGGT	.	PASS	Atlas-SNP
FZD3	7976	hgsc.bcm.edu	37	8	28385109	28385109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	108	2	107	0	0.0185185	0	.	.	none	FZD3,NS,carcinoma,-2,1	FZD3	65	1	NM_017412	exon5	c.A832G	p.T278A	ACAGTGACACAAG	.	scavenged	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	37	5	145631422	145631422	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	82	4	70	0	0.0487805	0	.	.	none	.	RBM27	119	.	NM_018989	exon9	c.T1428C	p.P476P	CAGCCCTACCCCT	.	PASS	Atlas-SNP
ADIPOR2	79602	hgsc.bcm.edu	37	12	1895203	1895203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	188	3	178	1	0.0159574	0.00561798	.	.	none	ADIPOR2,bladder,carcinoma,-2,1	ADIPOR2	30	1	NM_024551	exon8	c.A1126G	p.I376V	TTCATGATCGGCG	.	scavenged	Atlas-SNP
NAP1L3	4675	hgsc.bcm.edu	37	X	92928071	92928071	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	40	10	33	0	0.25	0	.	.	none	.	NAP1L3	81	.	NM_004538	exon1	c.A233C	p.K78T	ACCCTCTTCTTTC	.	PASS	Atlas-SNP
ZNF568	374900	hgsc.bcm.edu	37	19	37487723	37487723	+	Missense_Mutation	SNP	G	G	A	rs935707	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	11	7	2	1	0.636364	0.5	A|0.476;C|0.009	0.476	strong	ZNF568_ENST00000455427,NS,carcinoma,0,1	ZNF568	106	1	NM_001204838	exon10	c.G1130A	p.R377H	CCTTTCGTTCCAG	.	scavenged	Atlas-SNP
ZNF649	65251	hgsc.bcm.edu	37	19	52403358	52403358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	212	3	208	0	0.0141509	0	.	.	none	ZNF649,colon,carcinoma,0,1	ZNF649	72	1	NM_023074	exon2	c.G3A	p.M1I	CTTTGTCATTTTC	.	scavenged	Atlas-SNP
SEC14L3	266629	hgsc.bcm.edu	37	22	30867895	30867895	+	Silent	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	44	12	43	0	0.272727	0	.	.	none	.	SEC14L3	46	.	NM_174975	exon1	c.C51G	p.A17A	CACCTTGGCCAGG	.	PASS	Atlas-SNP
CELA3A	10136	hgsc.bcm.edu	37	1	22333419	22333419	+	Silent	SNP	T	T	C	rs138658162	byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	440	25	416	9	0.0568182	0.0216346	T|0.991;C|0.009	0.009	strong	CELA3A,NS,carcinoma,0,1	CELA3A	35	1	NM_005747	exon5	c.T411C	p.D137D	GGGAGATGCCGTC	.	scavenged	Atlas-SNP
ZNF385D	79750	hgsc.bcm.edu	37	3	21552504	21552504	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	165	3	127	0	0.0181818	0	.	.	none	ZNF385D,NS,carcinoma,-1,2	ZNF385D	93	2	NM_024697	exon4	c.G288A	p.A96A	GTGGGCCGCAGCC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515078	195515078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	113	3	86	1	0.0265487	0.0116279	.	.	none	MUC4_ENST00000463781,bladder,carcinoma,+1,5	MUC4	1505	5	NM_018406	exon2	c.G3373A	p.D1125N	AAGTGTCGGTGAC	.	scavenged	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	37	22	45802439	45802439	+	Silent	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	70	28	66	0	0.4	0	.	.	none	.	SMC1B	215	.	NM_148674	exon4	c.A517C	p.R173R	ACTTTCTTTTCTT	.	PASS	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170627769	170627769	+	Missense_Mutation	SNP	T	T	C	rs6905610	bycluster;by2hit2allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	112	9	86	5	0.0803571	0.0581395	T|0.985;C|0.015	0.015	weak	FAM120B,colon,carcinoma,0,1	FAM120B	108	1	NM_032448	exon2	c.T1291C	p.S431P	ACAGACTCTGAAC	.	scavenged	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	C	T	rs79575795		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	382	10	400	3	0.026178	0.0075	.	.	weak	POTEC,NS,carcinoma,0,17	POTEC	129	17	NM_001137671	exon10	c.G1430A	p.R477Q	TGTTTCCGGGTAT	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511523	195511523	+	Missense_Mutation	SNP	C	C	T	rs142766505	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	105	9	94	9	0.0857143	0.0957447	C|0.703;G|0.137;T|0.159	0.159	strong	MUC4_ENST00000463781,NS,carcinoma,0,3	MUC4	1505	3	NM_018406	exon2	c.G6928A	p.A2310T	AGGAAGCGTCGGT	.	scavenged	Atlas-SNP
TMTC4	84899	hgsc.bcm.edu	37	13	101287335	101287335	+	Silent	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	216	12	160	0	0.0555556	0	.	.	none	.	TMTC4	103	.	NM_032813	exon11	c.G1317T	p.G439G	ACAGTACCCAACG	.	PASS	Atlas-SNP
ZPLD1	131368	hgsc.bcm.edu	37	3	102187821	102187821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	131	5	102	0	0.0381679	0	.	.	none	ZPLD1,rectum,carcinoma,-2,3	ZPLD1	82	3	NM_175056	exon8	c.C823T	p.P275S	AAGGACCCTCAGA	.	scavenged	Atlas-SNP
AQP7	364	hgsc.bcm.edu	37	9	33395103	33395103	+	Silent	SNP	G	G	A	rs148012859	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	257	5	270	4	0.0194553	0.0148148	A|0.002;G|0.998;T|0.000	0.002	strong	AQP7,NS,carcinoma,0,1	AQP7	58	1	NM_001170	exon3	c.C117T	p.A39A	GAACTCGGCCAGG	.	scavenged	Atlas-SNP
SLC29A1	2030	hgsc.bcm.edu	37	6	44197393	44197393	+	Missense_Mutation	SNP	C	C	T	rs201335180		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	143	2	155	0	0.013986	0	C|0.999;T|0.001	0.001	weak	SLC29A1,NS,carcinoma,+1,1	SLC29A1	45	1	NM_004955	exon4	c.C179T	p.A60V	AGGACGCCCAGGC	.	scavenged	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141294279	141294279	+	Splice_Site	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	94	27	84	0	0.287234	0	.	.	none	.	LRP1B	1315	.	NM_018557	exon47	c.7514-1G>T	.	TTTTAGCTGCAAG	.	PASS	Atlas-SNP
TRIM48	79097	hgsc.bcm.edu	37	11	55032663	55032663	+	Missense_Mutation	SNP	T	T	C	rs200778682	byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	752	14	624	13	0.018617	0.0208333	T|0.996;C|0.004	0.004	strong	TRIM48_ENST00000417545,NS,carcinoma,0,4	TRIM48	149	4	NM_024114	exon2	c.T332C	p.I111T	GTGGCATTCACAG	.	scavenged	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179600638	179600638	+	Silent	SNP	G	G	A	rs184307461	bycluster;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	205	43	155	0	0.209756	0	G|1.000;A|0.000	0.000	strong	TTN_ENST00000356127,NS,carcinoma,-2,2	TTN	18412	2	NM_001267550	exon50	c.C14535T	p.D4845D	TTCTGCGTCGGAA	.	PASS	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	37	4	175899130	175899130	+	Silent	SNP	G	G	A	rs376108430		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	75	9	63	2	0.12	0.031746	.	.	weak	ADAM29,NS,carcinoma,0,1	ADAM29	262	1	NM_001130703	exon4	c.G2454A	p.T818T	TGTGACGCCCTCC	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750536	128750536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	88	31	75	0	0.352273	0	.	.	none	.	MYC	168	.	NM_002467	exon2	c.A73G	p.R25G	ACCAACAGGAACT	.	PASS	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	37	6	34004150	34004150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	79	15	87	0	0.189873	0	.	.	none	.	GRM4	317	.	NM_000841	exon9	c.C1737G	p.I579M	AAGCTTGATGATG	.	PASS	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	37	12	20787945	20787945	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	111	7	95	0	0.0630631	0	.	.	none	.	PDE3A	184	.	NM_000921	exon8	c.A1956T	p.K652N	GAGGAAAGCATCG	.	PASS	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	37	2	213872244	213872244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	368	6	280	1	0.0163043	0.00357143	.	.	none	IKZF2,bladder,carcinoma,-1,1	IKZF2	71	1	NM_016260	exon8	c.A1421G	p.E474G	CAGTGCTCACACT	.	scavenged	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	37	12	15637161	15637161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	145	6	114	0	0.0413793	0	.	.	none	.	PTPRO	148	.	NM_002848	exon2	c.G329A	p.R110K	CATCCAGATCAAT	.	PASS	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	37	17	26919654	26919654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	134	48	126	0	0.358209	0	.	.	none	.	SPAG5	92	.	NM_006461	exon3	c.A608G	p.E203G	GACTCCTCTAAGA	.	PASS	Atlas-SNP
ALDH3B2	222	hgsc.bcm.edu	37	11	67432799	67432799	+	Silent	SNP	G	G	A	rs80147122	bycluster;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	271	7	271	2	0.0258303	0.00738007	.	.	strong	ALDH3B2,NS,haematopoietic_neoplasm,0,2	ALDH3B2	46	2	NM_001031615	exon7	c.C663T	p.R221R	GGCCACGCGGCTG	.	scavenged	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	37	8	42166458	42166458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	91	36	104	0	0.395604	0	.	.	none	.	IKBKB	88	.	NM_001556	exon8	c.G607A	p.V203I	GTGACCGTCGACT	.	PASS	Atlas-SNP
MITF	4286	hgsc.bcm.edu	37	3	70008463	70008463	+	Silent	SNP	C	C	T	rs149086403		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	103	3	96	0	0.0291262	0	C|1.000;T|0.000	0.000	weak	MITF_ENST00000352241,colon,carcinoma,+1,2	MITF	156	2	NM_198159	exon9	c.C1053T	p.S351S	AGCATCCGTGGAC	.	scavenged	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	37	11	22646551	22646551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	62	2	53	0	0.0322581	0	.	.	none	FANCF,colon,carcinoma,+1,1	FANCF	24	1	NM_022725	exon1	c.C806T	p.A269V	GACAGCGCTGGGT	.	scavenged	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82584184	82584184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	180	3	131	0	0.0166667	0	.	.	none	Q9Y6V0-3,colon,carcinoma,+1,3	PCLO	1506	3	NM_014510	exon5	c.A6085G	p.I2029V	AAACAATATCTTC	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750613	128750613	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	88	29	75	0	0.329545	0	.	.	none	MYC_ENST00000377970,NS,lymphoid_neoplasm,0,4	MYC	168	4	NM_002467	exon2	c.G150A	p.Q50Q	GCAGCAGCAGCAG	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190878562	190878562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	240	5	159	2	0.0208333	0.0125786	.	.	none	FRG1,NS,carcinoma,0,2	FRG1	76	2	NM_004477	exon6	c.G442C	p.A148P	AAAATGGCTTTGT	.	scavenged	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	437	23	342	0	0.0526316	0	.	.	weak	.	HAVCR1	84	.	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950717	79950717	+	Silent	SNP	C	C	T	rs201906899	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	12	3	7	0	0.25	0	C|0.979;T|0.021	0.021	strong	MSH3_ENST00000265081,NS,carcinoma,+2,1	MSH3	129	1	NM_002439	exon1	c.C171T	p.A57A	AGCGGCCGCAGCG	.	scavenged	Atlas-SNP
TRIM17	51127	hgsc.bcm.edu	37	1	228598862	228598862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	184	4	166	0	0.0217391	0	.	.	none	TRIM17_ENST00000456946,colon,carcinoma,+1,2	TRIM17	66	2	NM_001024940	exon4	c.C541T	p.R181W	CTCTCCGCTCCTT	.	scavenged	Atlas-SNP
CNIH3	149111	hgsc.bcm.edu	37	1	224804946	224804946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	206	3	207	0	0.0145631	0	.	.	none	CNIH3,NS,carcinoma,0,1	CNIH3	23	1	NM_152495	exon1	c.G70T	p.A24S	TTCTTCGCCATCT	.	scavenged	Atlas-SNP
FOXO3	2309	hgsc.bcm.edu	37	6	108985269	108985269	+	Silent	SNP	C	C	T	rs34079373		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	113	3	90	1	0.0265487	0.0111111	.	.	weak	FOXO3,NS,carcinoma,0,1	FOXO3	67	1	NM_001455	exon2	c.C1233T	p.S411S	GCGGAGCTCTAGC	.	scavenged	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	37	18	14542916	14542916	+	Missense_Mutation	SNP	G	G	T	rs4429251	bycluster;by2hit2allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	385	13	329	4	0.0337662	0.0121581	G|1.000;|0.000	.	weak	POTEC,NS,carcinoma,+1,1	POTEC	129	1	NM_001137671	exon1	c.C230A	p.T77K	TTGCTCGTGCCGC	.	scavenged	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22155696	22155696	+	Missense_Mutation	SNP	T	T	C	rs201427226	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	20	4	21	1	0.2	0.047619	.	.	weak	ZNF208_ENST00000428290,caecum,carcinoma,0,3	ZNF208	817	3	NM_007153	exon4	c.A2140G	p.I714V	TATGAATTCTCTT	.	scavenged	Atlas-SNP
SYDE1	85360	hgsc.bcm.edu	37	19	15224520	15224520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	34	8	80	0	0.235294	0	.	.	none	.	SYDE1	44	.	NM_033025	exon8	c.G1954A	p.A652T	CGCTACGCCGGCG	.	PASS	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	37	3	10318158	10318158	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	52	4	58	0	0.0769231	0	.	.	none	.	TATDN2	59	.	NM_014760	exon5	c.C1947T	p.D649D	CCCTGACTACAAG	.	PASS	Atlas-SNP
ABLIM1	3983	hgsc.bcm.edu	37	10	116225565	116225565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	135	2	109	1	0.0148148	0.00917431	.	.	none	ABLIM1_ENST00000392952,rectum,carcinoma,+1,6	ABLIM1	131	6	NM_002313	exon12	c.C1333T	p.R445W	TCATCCGATCCCG	.	scavenged	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	37	4	5418579	5418579	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	84	3	70	0	0.0357143	0	.	.	none	STK32B,NS,carcinoma,+2,1	STK32B	87	1	NM_018401	exon6	c.T480C	p.V160V	ACATGTTCACATT	.	scavenged	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	37	6	158922767	158922767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	237	3	185	1	0.0126582	0.00540541	.	.	none	TULP4,NS,carcinoma,0,1	TULP4	137	1	NM_020245	exon13	c.T2072C	p.I691T	TCCCTATTGCACC	.	scavenged	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	37	10	38343345	38343345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	122	24	116	0	0.196721	0	.	.	none	.	ZNF33A	103	.	NM_006954	exon5	c.A293C	p.N98T	AAGAAAACCAATC	.	PASS	Atlas-SNP
DEFB119	245932	hgsc.bcm.edu	37	20	29976828	29976828	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	99	2	119	0	0.020202	0	.	.	none	DEFB119_ENST00000376315,NS,carcinoma,0,1	DEFB119	37	1	NM_153323	exon2	c.G267A	p.X89X	TCATTTCTATCTA	.	scavenged	Atlas-SNP
ARRDC4	91947	hgsc.bcm.edu	37	15	98512603	98512603	+	Silent	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	95	36	75	0	0.378947	0	.	.	none	.	ARRDC4	30	.	NM_183376	exon5	c.C876G	p.S292S	CTATTCCTTAGCT	.	PASS	Atlas-SNP
STK10	6793	hgsc.bcm.edu	37	5	171482633	171482633	+	Missense_Mutation	SNP	C	C	T	rs115040416	byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	303	3	281	1	0.00990099	0.00355872	C|0.990;T|0.010	0.010	strong	STK10,NS,carcinoma,0,1	STK10	100	1	NM_005990	exon16	c.G2485A	p.G829S	CCCCGCCGTTGAT	.	scavenged	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888042	52888042	+	Silent	SNP	G	G	T	rs75507701	bycluster;byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	37	9	28	2	0.243243	0.0714286	G|0.910;T|0.090	0.090	strong	ZNF880,caecum,carcinoma,0,1	ZNF880	45	1	NM_001145434	exon4	c.G1209T	p.T403T	GCACACGGGAGAG	.	scavenged	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	37	13	103504506	103504506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	180	47	113	0	0.261111	0	.	.	none	.	.	.	.	NM_001204425	exon10	c.C1489G	p.R497G	GGAGTCCGGGATC	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139626110	139626110	+	Silent	SNP	C	C	T	rs139816222		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	142	35	126	0	0.246479	0	C|1.000;T|0.000	0.000	weak	COL22A1,rectum,carcinoma,-1,1	COL22A1	390	1	NM_152888	exon56	c.G3978A	p.P1326P	ACTCACCGGTGGG	.	PASS	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	37	15	79339155	79339155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	192	3	141	0	0.015625	0	.	.	none	RASGRF1,NS,carcinoma,+2,1	RASGRF1	168	1	NM_001145648	exon5	c.C811T	p.R271W	CCATCCGCAGCGG	.	scavenged	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	37	6	17706506	17706506	+	Splice_Site	SNP	A	A	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	37	11	72	0	0.297297	0	.	.	none	.	NUP153	116	.	NM_005124	exon2	c.111+2T>A	.	TCCCATACCTGAT	.	PASS	Atlas-SNP
SLC29A3	55315	hgsc.bcm.edu	37	10	73111474	73111474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	91	4	108	0	0.043956	0	.	.	none	.	SLC29A3	51	.	NM_018344	exon4	c.C539T	p.T180I	CCTCCACTGTCTT	.	PASS	Atlas-SNP
PCK2	5106	hgsc.bcm.edu	37	14	24573041	24573041	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	187	3	165	0	0.0160428	0	.	.	none	PCK2,NS,carcinoma,+1,1	PCK2	66	1	NM_004563	exon10	c.C1791T	p.S597S	GTTCTCCCTCCCC	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750559	128750559	+	Missense_Mutation	SNP	C	C	G	rs146504683	byfrequency;alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	94	31	82	0	0.329787	0	C|0.999;T|0.001	.	alt	.	MYC	168	.	NM_002467	exon2	c.C96G	p.D32E	CTACGACTCGGTG	.	PASS	Atlas-SNP
DDX3X	1654	hgsc.bcm.edu	37	X	41204802	41204802	+	Splice_Site	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	129	68	80	0	0.527132	0	.	.	none	.	DDX3X	138	.	NM_001193417	exon11	c.1267+1G>T	.	CAACAGGTAACAT	.	PASS	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	37	17	66918384	66918384	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	60	20	64	0	0.333333	0	.	.	none	.	ABCA8	213	.	NM_007168	exon11	c.A1500G	p.K500K	TTTACCTTTCAAG	.	PASS	Atlas-SNP
RBMXL1	494115	hgsc.bcm.edu	37	1	89448812	89448812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	345	10	295	4	0.0289855	0.0135593	.	.	none	CCBL2,NS,carcinoma,0,3	.	.	3	NM_001162536	exon3	c.A698C	p.D233A	GCATAATCTCTTG	.	scavenged	Atlas-SNP
FKBP9	11328	hgsc.bcm.edu	37	7	33014897	33014897	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	135	43	138	1	0.318519	0.00724638	.	.	none	FKBP9,brain,glioma,+1,9	FKBP9	335	9	NM_007270	exon3	c.G471A	p.P157P	GCCCCCGAGTTGC	.	scavenged	Atlas-SNP
POTEB	339010	hgsc.bcm.edu	37	15	21071492	21071492	+	Missense_Mutation	SNP	G	G	T	rs2664992		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	339	157	224	119	0.463127	0.53125	.	.	weak	ENSG00000230031,NS,carcinoid-endocrine_tumour,0,1	POTEB	22	1	NM_207355	exon1	c.C119A	p.T40K	TTGCTCGTGCCGC	.	scavenged	Atlas-SNP
SNTB2	6645	hgsc.bcm.edu	37	16	69294165	69294165	+	Splice_Site	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	126	3	113	1	0.0238095	0.00884956	.	.	none	SNTB2,NS,carcinoma,0,1	SNTB2	22	1	NM_006750	exon3	c.1005+2T>C	.	AACAGGTAGGCTG	.	scavenged	Atlas-SNP
TACC1	6867	hgsc.bcm.edu	37	8	38677553	38677553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	22	7	16	0	0.318182	0	.	.	none	.	TACC1	98	.	NM_006283	exon3	c.A791G	p.Y264C	CATCCTATCACTT	.	PASS	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	65	6	56	2	0.0923077	0.0357143	T|0.001;G|0.956	0.001	strong	NBPF10,NS,carcinoma,0,1	NBPF10	221	1	NM_001039703	exon3	c.C325T	p.L109L	ACCCAGCTAAGGG	.	scavenged	Atlas-SNP
BCHE	590	hgsc.bcm.edu	37	3	165547891	165547891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	275	3	247	0	0.0109091	0	.	.	none	BCHE,rectum,carcinoma,0,2	BCHE	136	2	NM_000055	exon2	c.G931A	p.G311R	GAGTCCCATAGGG	.	scavenged	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234367	45234367	+	Missense_Mutation	SNP	A	A	T	rs200148949		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	52	3	48	2	0.0576923	0.0416667	.	.	weak	CDC27_ENST00000531206,NS,carcinoma,0,4	CDC27	337	4	NM_001114091	exon7	c.T754A	p.S252T	ATATGGAAGTTCC	.	scavenged	Atlas-SNP
FAM35A	54537	hgsc.bcm.edu	37	10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	rs3129516		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	158	4	116	1	0.0253165	0.00862069	.	.	weak	FAM35A,NS,carcinoma,0,3	FAM35A	48	3	NM_019054	exon3	c.C719A	p.T240K	CTGATACAGAATT	.	scavenged	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921137	12921137	+	Missense_Mutation	SNP	T	T	A	rs17039283		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	180	8	198	1	0.0444444	0.00505051	T|1.000;|0.000	.	weak	PRAMEF2,NS,carcinoma,0,1	PRAMEF2	85	1	NM_023014	exon4	c.T928A	p.L310M	GAGGACTTGAAGT	.	scavenged	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170627775	170627775	+	Missense_Mutation	SNP	C	C	G	rs6934830	byfrequency;by2hit2allele;byhapmap	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	112	4	81	2	0.0357143	0.0246914	C|0.712;G|0.288	0.288	strong	FAM120B,colon,carcinoma,0,1	FAM120B	108	1	NM_032448	exon2	c.C1297G	p.P433A	TCTGAACCCAGGC	.	scavenged	Atlas-SNP
C1orf27	54953	hgsc.bcm.edu	37	1	186357578	186357578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	120	38	115	0	0.316667	0	.	.	none	C1orf27_ENST00000287859,NS,carcinoma,-1,2	C1orf27	41	2	NM_001164245	exon5	c.T335A	p.M112K	AGCTAATGTTTGC	.	PASS	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23527721	23527721	+	Missense_Mutation	SNP	C	C	A	rs201643800	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	130	11	149	3	0.0846154	0.0201342	.	.	weak	PRDM9,brain,primitive_neuroectodermal_tumour-medulloblastoma,-1,1	PRDM9	344	1	NM_020227	exon11	c.C2524A	p.R842S	GGCTTTCGCAATA	.	scavenged	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	37	11	77614592	77614592	+	Silent	SNP	C	C	T	rs12532775	by2hit2allele;byhapmap	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	228	10	200	5	0.0438596	0.025	.	.	weak	INTS4,NS,carcinoma,0,2	INTS4	89	2	NM_033547	exon17	c.G2091A	p.A697A	CTGTTTCGCTGCT	.	scavenged	Atlas-SNP
