Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
MTSS1	9788	hgsc.bcm.edu	37	8	125565316	125565318	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	220	43	204	.	0.195	.	.	.	none	.	MTSS1	79	.	NM_014751	exon14	c.2184_2186del	p.728_729del	.	.	PASS	Pindel,Atlas-Indel
DGKB	1607	hgsc.bcm.edu	37	7	14775822	14775822	+	Splice_Site	DEL	G	G	-	rs139628753	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	139	103	139	0	0.741007	0	G|0.405;-|0.595	0.595	strong	.	DGKB	166	.	NM_004080	exon5	c.169-2C>-	.	.	.	PASS	Atlas-Indel
TOX	9760	hgsc.bcm.edu	37	8	59750643	59750643	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83	19	112	.	0.229	.	.	.	none	.	TOX	83	.	NM_014729	exon5	c.922delC	p.Q308fs	.	.	PASS	Pindel,Atlas-Indel
MAML3	55534	hgsc.bcm.edu	37	4	140811112	140811123	+	In_Frame_Del	DEL	TGCTGCTGCTGT	TGCTGCTGCTGT	-	rs66794549	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	TGCTGCTGCTGT	TGCTGCTGCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	120	23	92	0	0.191667	0	.	.	alt	.	MAML3	192	.	NM_018717	exon2	c.1468_1479del	p.490_493del	.	.	PASS	Atlas-Indel
CSNK2A1	1457	hgsc.bcm.edu	37	20	470463	470463	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	91	18	79	.	0.198	.	.	.	none	.	CSNK2A1	36	.	NM_001895	exon9	c.685delA	p.K229fs	.	.	PASS	Pindel,Atlas-Indel
SETD1B	23067	hgsc.bcm.edu	37	12	122242657	122242658	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83	27	70	0	0.325301	0	.	.	none	.	SETD1B	105	.	NM_015048	exon1	c.14_15insC	p.H5fs	.	.	PASS	Atlas-Indel
CYP3A43	64816	hgsc.bcm.edu	37	7	99453289	99453290	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	128	31	89	0	0.242188	0	.	.	none	CYP3A43,NS,carcinoma,0,1	CYP3A43	52	1	NM_022820	exon8	c.746_747insA	p.L249fs	.	.	PASS	Atlas-Indel
TNFAIP3	7128	hgsc.bcm.edu	37	6	138200459	138200460	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	91	17	63	0	0.186813	0	.	.	none	.	TNFAIP3	340	.	NM_001270508	exon7	c.1876_1877del	p.626_626del	.	.	PASS	Atlas-Indel
TRAK1	22906	hgsc.bcm.edu	37	3	42251577	42251578	+	In_Frame_Ins	INS	-	-	GGA	rs10634555	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	52	12	41	.	0.231	.	.	.	strong	TRAK1,caecum,carcinoma,0,1	TRAK1	188	1	NM_001265608	exon14	c.2063_2064insGGA	p.T688delinsTE	.	.	PASS	Pindel
NHLRC2	374354	hgsc.bcm.edu	37	10	115636657	115636657	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75	13	82	0	0.173333	0	.	.	none	.	NHLRC2	56	.	NM_198514	exon3	c.A709C	p.R237R	ACTGATAGATTGG	.	PASS	Atlas-SNP
DEFA3	1668	hgsc.bcm.edu	37	8	6873603	6873603	+	Missense_Mutation	SNP	T	T	G	rs2230231	bycluster;byfrequency;byhapmap	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	247	41	238	30	0.165992	0.12605	T|0.167;G|0.833	0.833	strong	DEFA3,NS,carcinoma,0,1	DEFA3	7	1	NM_005217	exon3	c.A194C	p.D65A	TAGCAGTCCATGT	.	scavenged	Atlas-SNP
NUDT8	254552	hgsc.bcm.edu	37	11	67395800	67395800	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	49	12	30	0	0.244898	0	.	.	none	.	NUDT8	12	.	NM_181843	exon3	c.G399A	p.S133S	CTCCTCCGAGTTG	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017576	1017576	+	Missense_Mutation	SNP	G	G	T	rs372353242	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	566	48	501	0	0.0848057	0	.	.	alt	MUC6_ENST00000421673,NS,carcinoma,+1,2	MUC6	408	2	NM_005961	exon31	c.C5225A	p.T1742K	TTGGCCGTGCTAA	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100679782	100679782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	8	69	4	0.115942	0.057971	.	.	none	MUC17,colon,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.A5085G	p.I1695M	AAGTATAACTGTC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509525	195509525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	158	10	158	3	0.0632911	0.0189873	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C8926T	p.P2976S	GAAGAGGGGTGGC	.	scavenged	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	37	20	58569512	58569512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	50	10	44	0	0.2	0	.	.	none	CDH26_ENST00000244047,caecum,carcinoma,-1,2	CDH26	229	2	NM_177980	exon11	c.C1634T	p.A545V	GAAATGCGGAGGA	.	PASS	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	37	3	97869007	97869007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	256	7	254	2	0.0273438	0.00787402	.	.	none	OR5H14,NS,carcinoma,0,1	OR5H14	56	1	NM_001005514	exon1	c.A778G	p.M260V	ATGTATATGGGCT	.	scavenged	Atlas-SNP
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	8	4	0	0	0.5	.	A|0.808;G|0.192	0.192	strong	.	PPP1R12C	46	.	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	PASS	Atlas-SNP
KRTAP4-12	83755	hgsc.bcm.edu	37	17	39280162	39280162	+	Silent	SNP	A	A	G	rs28515113	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	71	7	62	1	0.0985916	0.016129	A|0.891;G|0.109	0.109	strong	KRTAP4-12,colon,carcinoma,0,3	KRTAP4-12	32	3	NM_031854	exon1	c.T213C	p.C71C	GGTCCTACAGCAG	.	scavenged	Atlas-SNP
TBX5	6910	hgsc.bcm.edu	37	12	114836488	114836488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	118	51	86	0	0.432203	0	.	.	none	.	TBX5	188	.	NM_000192	exon5	c.C400T	p.R134C	ACAGGCGGCCAGG	.	PASS	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	37	1	223567173	223567173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	30	6	29	0	0.2	0	.	.	none	.	C1orf65	71	.	NM_152610	exon1	c.C356T	p.P119L	CCCGCCCGGCTTG	.	PASS	Atlas-SNP
CCDC150	284992	hgsc.bcm.edu	37	2	197531530	197531530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	440	15	346	9	0.0340909	0.0260116	.	.	none	CCDC150,NS,carcinoma,0,1	CCDC150	96	1	NM_001080539	exon7	c.G850A	p.E284K	AAAAAAGAAGAGT	.	scavenged	Atlas-SNP
NT5C	30833	hgsc.bcm.edu	37	17	73127683	73127683	+	Silent	SNP	T	T	C	rs4788867	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	8	7	5	0	0.875	0	T|0.501;C|0.499	0.499	strong	.	NT5C	3	.	NM_001252377	exon1	c.A120G	p.Q40Q	GCGGCGTTGCTCC	.	PASS	Atlas-SNP
MSANTD3	91283	hgsc.bcm.edu	37	9	103204249	103204249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	18	58	0	0.26087	0	.	.	none	.	MSANTD3	10	.	NM_001198805	exon2	c.C29T	p.A10V	AGCCTGCCAAATA	.	PASS	Atlas-SNP
NEGR1	257194	hgsc.bcm.edu	37	1	72400774	72400774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	167	33	134	0	0.197605	0	.	.	none	.	NEGR1	60	.	NM_173808	exon2	c.C397A	p.L133I	CAGTTAGATGCAC	.	PASS	Atlas-SNP
ISLR	3671	hgsc.bcm.edu	37	15	74468257	74468257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	53	11	45	0	0.207547	0	.	.	none	.	ISLR	49	.	NM_201526	exon2	c.A1058G	p.D353G	GTGAGGACACACT	.	PASS	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	37	15	45427482	45427482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	77	16	59	0	0.207792	0	.	.	none	.	DUOX1	125	.	NM_017434	exon6	c.G488A	p.R163Q	ATCCCCGGGACCC	.	PASS	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	37	17	16097825	16097825	+	Missense_Mutation	SNP	T	T	G	rs73281920	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75	7	43	1	0.0933333	0.0232558	T|0.921;G|0.079	0.079	strong	NCOR1,NS,carcinoma,0,1	NCOR1	240	1	NM_001190438	exon1	c.A59C	p.Y20S	GGAGGATAACGAC	.	scavenged	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	37	X	41056722	41056722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	157	71	155	0	0.452229	0	.	.	none	.	USP9X	385	.	NM_001039591	exon29	c.T4339A	p.F1447I	AAAAAATTTCATA	.	PASS	Atlas-SNP
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069	bycluster;byhapmap;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	6	6	0	0	1	.	G|0.001;A|0.999	0.999	strong	.	CCDC102A	22	.	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	PASS	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	37	17	21319439	21319439	+	Missense_Mutation	SNP	T	T	G	rs76684759	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	115	18	106	20	0.156522	0.188679	T|0.500;G|0.500	0.500	strong	KCNJ12,NS,carcinoma,0,1	.	.	1	NM_001194958	exon3	c.T785G	p.I262S	ACCGCATCTTTCT	.	scavenged	Atlas-SNP
ANGPTL7	10218	hgsc.bcm.edu	37	1	11253778	11253778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	55	7	44	0	0.127273	0	.	.	none	.	ANGPTL7	23	.	NM_021146	exon3	c.G619A	p.E207K	GGGAACGAACACA	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579421	55579421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	404	57	407	0	0.141089	0	.	.	none	.	OR5L1	145	.	NM_001004738	exon1	c.T479C	p.L160S	TTCATTTGTGCTT	.	PASS	Atlas-SNP
SLC45A2	51151	hgsc.bcm.edu	37	5	33964023	33964023	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125	23	105	0	0.184	0	.	.	none	.	SLC45A2	100	.	NM_016180	exon3	c.T661G	p.F221V	CAGAGAAGAAGAA	.	PASS	Atlas-SNP
TTC13	79573	hgsc.bcm.edu	37	1	231093993	231093993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	168	27	167	0	0.160714	0	.	.	none	.	TTC13	74	.	NM_001122835	exon3	c.A419G	p.N140S	CTGTCATTATCAG	.	PASS	Atlas-SNP
U2AF1	7307	hgsc.bcm.edu	37	21	44513242	44513242	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	62	8	61	0	0.129032	0	.	.	none	U2AF1_ENST00000380276,NS,neuroblastoma,-1,4	U2AF1	322	4	NM_001025203	exon8	c.G693A	p.S231S	ATCTCTCGACCGC	.	PASS	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	89	3	77	0	0.0337079	0	.	.	none	CELF3,caecum,carcinoma,0,1	CELF3	49	1	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	scavenged	Atlas-SNP
BTG1	694	hgsc.bcm.edu	37	12	92537899	92537899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	146	18	92	0	0.123288	0	.	.	none	.	BTG1	30	.	NM_001731	exon2	c.C473T	p.T158M	GGGCTCGTTCTGC	.	PASS	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	37	2	234580967	234580967	+	Silent	SNP	A	A	G	rs76359435	bycluster;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	162	9	145	3	0.0555556	0.0206897	.	.	alt	UGT1A9,colon,carcinoma,0,1	UGT1A9	79	1	NM_021027	exon1	c.A387G	p.K129K	GTTTAAAGACAAA	.	scavenged	Atlas-SNP
RGL3	57139	hgsc.bcm.edu	37	19	11508197	11508197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	71	25	51	0	0.352113	0	.	.	none	RGL3_ENST00000380456,NS,carcinoma,0,2	RGL3	100	2	NM_001161616	exon17	c.C1841T	p.A614V	TGCTGCGCCGGGA	.	PASS	Atlas-SNP
PABPC3	5042	hgsc.bcm.edu	37	13	25671795	25671795	+	Missense_Mutation	SNP	C	C	T	rs113416318	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82	5	73	2	0.0609756	0.0273973	C|0.988;T|0.012	0.012	strong	PABPC3,rectum,carcinoma,0,1	PABPC3	129	1	NM_030979	exon1	c.C1459T	p.R487C	GGTCCACGTCCTG	.	scavenged	Atlas-SNP
UBN1	29855	hgsc.bcm.edu	37	16	4910954	4910954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	100	53	67	0	0.53	0	.	.	none	.	UBN1	88	.	NM_001079514	exon7	c.A961G	p.S321G	CTGCTCAGTGAGT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138332	37138332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	52	19	49	0	0.365385	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.C254G	p.A85G	CCTGCGCCGACAT	.	PASS	Atlas-SNP
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45994293	45994293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	145	11	140	8	0.0758621	0.0571429	.	.	none	KRTAP10-4,NS,carcinoma,0,1	KRTAP10-4	44	1	NM_198687	exon1	c.A658G	p.T220A	TGCTGCACCTCCT	.	scavenged	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23235998	23235998	+	Missense_Mutation	SNP	G	G	A	rs201857114	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	74	20	66	0	0.27027	0	.	.	weak	.	IGLL5	26	.	NM_001178126	exon2	c.G325A	p.G109S	GTCCTAGGTAAGT	.	PASS	Atlas-SNP
ZNF8	7554	hgsc.bcm.edu	37	19	58805974	58805974	+	Missense_Mutation	SNP	A	A	G	rs202096304	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64	2	42	1	0.03125	0.0238095	A|0.999;G|0.001	0.001	weak	ZNF8,NS,carcinoma,0,1	ZNF8	60	1	NM_021089	exon4	c.A800G	p.N267S	CGTTTAACCATAA	.	scavenged	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	37	13	45009000	45009000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	187	57	202	0	0.304813	0	.	.	none	.	TSC22D1	88	.	NM_183422	exon3	c.T2984G	p.L995W	TACATCAAATGGC	.	PASS	Atlas-SNP
RBM38	55544	hgsc.bcm.edu	37	20	55967801	55967801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125	35	138	0	0.28	0	.	.	none	.	RBM38	19	.	NM_183425	exon2	c.A329C	p.Y110S	TGGCATATCTGGG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9018508	9018508	+	Missense_Mutation	SNP	T	T	G	rs74488264	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	97	7	97	1	0.0721649	0.0103093	T|0.500;G|0.500	0.500	weak	MUC16_ENST00000397910,colon,carcinoma,+2,2	MUC16	4315	2	NM_024690	exon24	c.A37666C	p.K12556Q	CATACTTCAGGTT	.	scavenged	Atlas-SNP
WAS	7454	hgsc.bcm.edu	37	X	48547156	48547156	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	184	95	149	0	0.516304	0	.	.	none	.	WAS	51	.	NM_000377	exon10	c.T1039C	p.L347L	GTACCTTTGGGGA	.	PASS	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122003487	122003487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	61	13	65	0	0.213115	0	.	.	none	CASR,colon,carcinoma,0,1	CASR	190	1	NM_001178065	exon7	c.C2716T	p.R906C	GTCTCCCGCAAGC	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	37	9	133729485	133729485	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	116	21	90	0	0.181034	0	.	.	none	.	ABL1	1632	.	NM_007313	exon2	c.G171A	p.E57E	CTTTGAGCCTCAG	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017974	1017974	+	Missense_Mutation	SNP	C	C	G	rs200353019	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	333	5	331	4	0.015015	0.0120846	.	.	weak	MUC6_ENST00000421673,colon,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.G4827C	p.Q1609H	TGTGGTCTGAGGG	.	scavenged	Atlas-SNP
MESDC2	23184	hgsc.bcm.edu	37	15	81271769	81271769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	50	17	62	0	0.34	0	.	.	none	.	MESDC2	23	.	NM_015154	exon3	c.T496G	p.Y166D	AGGCGTAGCTCCC	.	PASS	Atlas-SNP
FAM21A	387680	hgsc.bcm.edu	37	10	51863831	51863831	+	Missense_Mutation	SNP	G	G	C	rs2338445		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	914	21	826	8	0.0229759	0.00968523	.	.	weak	FAM21A,NS,carcinoma,0,1	FAM21A	32	1	NM_001005751	exon18	c.G1665C	p.K555N	GAGTAAGTTAAAA	.	scavenged	Atlas-SNP
RASSF10	644943	hgsc.bcm.edu	37	11	13031220	13031220	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66	17	80	0	0.257576	0	.	.	none	.	.	.	.	NM_001080521	exon1	c.C97T	p.R33X	GTTGTGCGAGTGC	.	PASS	Atlas-SNP
C20orf118	140711	hgsc.bcm.edu	37	20	35517718	35517718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	119	5	74	0	0.0420168	0	.	.	none	C20orf118,NS,carcinoma,-2,1	C20orf118	21	1	NM_080628	exon6	c.T577C	p.F193L	CCGACCTTCAACA	.	PASS	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	37	10	24910129	24910129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	357	87	304	0	0.243697	0	.	.	none	ARHGAP21,NS,carcinoma,+1,1	ARHGAP21	185	1	NM_020824	exon9	c.C695G	p.T232S	GTACTGGTTTGCT	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4722294	4722294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	103	26	101	1	0.252427	0.00990099	.	.	none	ITPR1,rectum,carcinoma,0,1	ITPR1	659	1	NM_001099952	exon25	c.C2998T	p.R1000X	TTTAAGCGAGAGT	.	scavenged	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921277	12921277	+	Silent	SNP	A	A	G	rs3204826	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	287	8	283	4	0.0278746	0.0141343	A|0.996;G|0.004	0.004	strong	PRAMEF2,NS,carcinoma,0,1	PRAMEF2	85	1	NM_023014	exon4	c.A1068G	p.L356L	CGTGTTAGAGGGC	.	scavenged	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	37	9	15745534	15745534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	101	20	93	0	0.19802	0	.	.	none	.	.	.	.	NM_173550	exon18	c.G2576A	p.R859H	AGTTGCGTTGTTT	.	PASS	Atlas-SNP
UGT2B17	7367	hgsc.bcm.edu	37	4	69433904	69433904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	366	88	306	0	0.240437	0	.	.	none	.	UGT2B17	34	.	NM_001077	exon1	c.G299A	p.S100N	GAAATACTATATG	.	PASS	Atlas-SNP
CCDC82	79780	hgsc.bcm.edu	37	11	96117597	96117597	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	484	7	428	0	0.0144628	0	.	.	none	CCDC82,NS,carcinoma,0,1	CCDC82	63	1	NM_024725	exon4	c.C315T	p.N105N	TGAACCGTTGCCA	.	scavenged	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230310	23230310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	107	20	140	0	0.186916	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.T77A	p.L26Q	GGCCCCTGCTGCT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138420	37138420	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66	26	66	0	0.393939	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.C342T	p.T114T	CGCCACCAAGCTG	.	PASS	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	37	8	142178188	142178188	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	163	12	146	0	0.0736196	0	.	.	none	.	DENND3	127	.	NM_014957	exon13	c.C1599T	p.Y533Y	GGCATACCATGCC	.	PASS	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	37	11	56345100	56345100	+	Missense_Mutation	SNP	G	G	A	rs182443406	bycluster;by1000genomes;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	193	54	221	0	0.279793	0	G|0.999;T|0.001	.	alt	.	OR5M10	56	.	NM_001004741	exon1	c.C98T	p.A33V	TAGATCGCCAGGA	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230348	23230348	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	113	19	135	0	0.168142	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.C115T	p.L39L	GGCCTGCTGCGCC	.	PASS	Atlas-SNP
ARL13B	200894	hgsc.bcm.edu	37	3	93768309	93768309	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	416	92	420	0	0.221154	0	.	.	none	.	ARL13B	52	.	NM_182896	exon8	c.C1084G	p.L362V	GAACCACTTAATA	.	PASS	Atlas-SNP
RPL13	6137	hgsc.bcm.edu	37	16	89629371	89629371	+	Missense_Mutation	SNP	G	G	A	rs139252401		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	148	46	100	0	0.310811	0	G|1.000;A|0.000	0.000	weak	.	RPL13	11	.	NM_000977	exon6	c.G557A	p.R186H	TGGCCCGTGCCAA	.	PASS	Atlas-SNP
MYD88	4615	hgsc.bcm.edu	37	3	38182337	38182337	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	96	45	120	0	0.46875	0	.	.	none	.	MYD88	900	.	NM_001172569	exon3	c.C592T	p.Q198X	TCTCTCCAGGTAA	.	PASS	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	37	4	94376873	94376873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	184	47	178	0	0.255435	0	.	.	none	.	GRID2	233	.	NM_001510	exon11	c.T1606G	p.F536V	GTGGACTTTACGA	.	PASS	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37424900	37424900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	41	18	58	0	0.439024	0	.	.	none	.	GRHPR	35	.	NM_012203	exon2	c.G142C	p.G48R	GAGCGAGGTGTGG	.	PASS	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	37	11	64591992	64591992	+	Missense_Mutation	SNP	G	G	A	rs138706676		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	137	29	134	0	0.211679	0	G|1.000;A|0.000	0.000	weak	.	CDC42BPG	101	.	NM_017525	exon37	c.C4609T	p.R1537W	GGGGCCGTTCTGA	.	PASS	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	13	7	5	0	0.538462	0	G|0.291;C|0.709	0.709	strong	.	GGA2	49	.	NM_015044	exon1	c.C90G	p.L30L	CTCACTGAGCCAC	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017483	1017483	+	Missense_Mutation	SNP	T	T	G	rs79986665	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	426	92	435	101	0.215962	0.232184	T|0.500;G|0.500	0.500	weak	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.A5318C	p.H1773P	CTGGTGTGGTTGG	.	scavenged	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	37	2	67630426	67630426	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	160	34	171	0	0.2125	0	.	.	none	.	ETAA1	88	.	NM_019002	exon5	c.G612A	p.E204E	GGAAGAGCTAGAT	.	PASS	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	37	15	45404810	45404810	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82	16	90	0	0.195122	0	.	.	none	.	DUOX2	137	.	NM_014080	exon4	c.G267A	p.T89T	GCCCCGCGTGGCT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230394	23230394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92	13	126	0	0.141304	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.C161T	p.A54V	CTGGAGCCTCAGT	.	PASS	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	37	9	33797962	33797962	+	Silent	SNP	A	A	G	rs374178684	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	158	5	118	1	0.0316456	0.00847458	.	.	weak	PRSS3_ENST00000361005,NS,neuroblastoma,0,3	PRSS3	79	3	NM_007343	exon3	c.A507G	p.K169K	GATCAAACTCTCC	.	scavenged	Atlas-SNP
OR8B2	26595	hgsc.bcm.edu	37	11	124252524	124252524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	357	69	383	0	0.193277	0	.	.	none	.	OR8B2	42	.	NM_001005468	exon1	c.G716T	p.S239I	CAAGTACTGAAGG	.	PASS	Atlas-SNP
C3orf35	339883	hgsc.bcm.edu	37	3	37458937	37458937	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	145	29	161	0	0.2	0	.	.	none	C3orf35,NS,carcinoma,+2,1	C3orf35	21	1	NM_178342	exon5	c.C180T	p.G60G	GCAGGGCAGTGCT	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100679390	100679390	+	Missense_Mutation	SNP	A	A	G	rs150982179		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	102	4	89	1	0.0392157	0.011236	.	.	weak	MUC17,NS,carcinoma,-2,1	MUC17	804	1	NM_001040105	exon3	c.A4693G	p.T1565A	ATGCAAACCTCAA	.	scavenged	Atlas-SNP
LILRA6	79168	hgsc.bcm.edu	37	19	54744722	54744722	+	Missense_Mutation	SNP	T	T	C	rs66585874	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	113	8	67	4	0.0707965	0.0597015	CATCAGGATGTT|0.500;GATCAGGATGTC|0.500	.	alt	LILRA6,NS,carcinoma,+2,1	LILRA6	75	1	NM_024318	exon5	c.A940G	p.N314D	GGATGTTCAGGGG	.	scavenged	Atlas-SNP
CXCR4	7852	hgsc.bcm.edu	37	2	136873448	136873448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	126	39	99	0	0.309524	0	.	.	none	.	CXCR4	51	.	NM_001008540	exon1	c.G62A	p.G21D	CCTGAGCCCATTT	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579419	55579419	+	Silent	SNP	T	T	C	rs34948392	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	401	56	408	1	0.139651	0.00245098	T|0.896;C|0.104	0.104	strong	OR5L1,NS,carcinoma,+2,3	OR5L1	145	3	NM_001004738	exon1	c.T477C	p.H159H	GATTCATTTGTGC	.	scavenged	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371373	240371373	+	Silent	SNP	A	A	T	rs199766654	byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	43	12	47	4	0.27907	0.0851064	A|0.994;T|0.006	0.006	strong	FMN2,rectum,carcinoma,0,1	FMN2	451	1	NM_020066	exon5	c.A3261T	p.P1087P	ACCCCCACCTCCC	.	scavenged	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230440	23230440	+	Splice_Site	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	61	14	94	0	0.229508	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.100+1G>A	.	GGGCAGGTAAGGG	.	PASS	Atlas-SNP
FAM72B	653820	hgsc.bcm.edu	37	1	120846059	120846059	+	Missense_Mutation	SNP	G	G	A	rs17846387		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	808	9	789	4	0.0111386	0.00506971	.	.	weak	FAM72B,NS,carcinoma,0,1	FAM72B	10	1	NM_001100910	exon3	c.G295A	p.G99R	AACAACGGACACT	.	scavenged	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138946	37138946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	58	18	59	0	0.310345	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.G559A	p.V187M	AAGAAGGTGAGCT	.	PASS	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145323667	145323667	+	Missense_Mutation	SNP	C	C	G	rs199626421		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	60	10	45	0	0.166667	0	.	.	weak	NBPF10,NS,carcinoma,0,6	NBPF10	221	6	NM_001039703	exon27	c.C3504G	p.D1168E	AAAGGACGAAGAA	.	scavenged	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	37	12	108956417	108956417	+	Missense_Mutation	SNP	T	T	G	rs67681514	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	8	8	0	0	1	.	GG|0.500;TT|0.500	.	alt	.	ISCU	19	.	NM_213595	exon1	c.T19G	p.F7V	GGGGCTTTCCGTC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230386	23230386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	95	14	132	0	0.147368	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.C47T	p.T16I	CCCAGACCCTGGA	.	PASS	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	37	4	145658962	145658962	+	Silent	SNP	G	G	A	rs35379077	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	134	35	132	0	0.261194	0	G|1.000;A|0.000	0.000	strong	.	HHIP	100	.	NM_022475	exon13	c.G1956A	p.P652P	TAGACCGAACAAG	.	PASS	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181689418	181689418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	262	38	293	0	0.145038	0	.	.	none	.	CACNA1E	778	.	NM_001205293	exon14	c.C1828T	p.L610F	TTCCTCCTCTTCC	.	PASS	Atlas-SNP
ADCK1	57143	hgsc.bcm.edu	37	14	78392248	78392248	+	Nonsense_Mutation	SNP	C	C	T	rs142956948	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92	17	84	1	0.184783	0.0119048	C|0.999;T|0.001	0.001	strong	ADCK1,colon,carcinoma,0,1	ADCK1	81	1	NM_020421	exon9	c.C1150T	p.R384X	ACGGCGCGATCGT	.	scavenged	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	12957770	12957770	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	103	21	83	0	0.203883	0	.	.	none	.	DLC1	411	.	NM_182643	exon9	c.G2076A	p.L692L	GATGATCAACCCC	.	PASS	Atlas-SNP
TRIM4	89122	hgsc.bcm.edu	37	7	99507230	99507230	+	Missense_Mutation	SNP	C	C	T	rs188783002	bycluster;by1000genomes;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	141	25	125	0	0.177305	0	C|1.000;A|0.000	.	alt	.	TRIM4	33	.	NM_033017	exon3	c.G525A	p.M175I	TAAATGCATGACT	.	PASS	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	37	12	56712936	56712936	+	Silent	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	131	30	97	0	0.229008	0	.	.	none	.	PAN2	107	.	NM_001127460	exon24	c.C3312G	p.V1104V	CAGGTAGACAGTG	.	PASS	Atlas-SNP
RBFOX1	54715	hgsc.bcm.edu	37	16	7759118	7759118	+	Missense_Mutation	SNP	C	C	T	rs372365163		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	193	96	155	0	0.497409	0	.	.	weak	RBFOX1_ENST00000550418,NS,carcinoma,0,3	RBFOX1	341	3	NM_145893	exon13	c.C1172T	p.T391M	CACCTACGGCGTT	.	PASS	Atlas-SNP
PRAMEF1	65121	hgsc.bcm.edu	37	1	12854479	12854479	+	Missense_Mutation	SNP	C	C	G	rs1063775	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	374	17	364	15	0.0454545	0.0412088	C|0.811;G|0.187;T|0.002	0.187	strong	PRAMEF1,NS,carcinoma,-1,2	PRAMEF1	78	2	NM_023013	exon3	c.C703G	p.R235G	AATCTTCGCAAAC	.	scavenged	Atlas-SNP
CSNK2A3	283106	hgsc.bcm.edu	37	11	11373697	11373697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	74	19	69	0	0.256757	0	.	.	none	.	.	.	.	NM_001256686	exon1	c.T970G	p.F324V	TGTAGAAATAGGG	.	PASS	Atlas-SNP
BCL11A	53335	hgsc.bcm.edu	37	2	60689133	60689133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	54	18	56	0	0.333333	0	.	.	none	BCL11A_ENST00000356842,caecum,carcinoma,0,5	BCL11A	298	5	NM_018014	exon4	c.C914T	p.P305L	GCCATTGGATTCA	.	PASS	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	37	7	76143285	76143285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	112	30	85	0	0.267857	0	.	.	none	.	UPK3B	15	.	NM_182684	exon5	c.A563G	p.D188G	CCATCGACACCTG	.	PASS	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53104001	53104001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	51	15	54	0	0.294118	0	.	.	none	POM121L12,NS,carcinoma,-2,1	POM121L12	146	1	NM_182595	exon1	c.C637T	p.R213W	CAGCCCCGGCCCT	.	PASS	Atlas-SNP
AHCYL1	10768	hgsc.bcm.edu	37	1	110561015	110561015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	139	32	129	0	0.230216	0	.	.	none	.	AHCYL1	49	.	NM_006621	exon12	c.C1144T	p.R382W	GTGACACGGGAGC	.	PASS	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	37	5	57755718	57755718	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	151	29	106	0	0.192053	0	.	.	none	.	PLK2	71	.	NM_006622	exon1	c.C69T	p.G23G	ACCCTTGCCCAGC	.	PASS	Atlas-SNP
ITGAV	3685	hgsc.bcm.edu	37	2	187521026	187521026	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	192	36	143	0	0.1875	0	.	.	none	ITGAV,rectum,carcinoma,+2,1	ITGAV	124	1	NM_002210	exon17	c.A1617C	p.R539R	AATTCGACGAGCA	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123922502	123922502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	385	89	297	0	0.231169	0	.	.	none	.	CNTRL	161	.	NM_007018	exon30	c.A5011G	p.T1671A	CAACTTACACTTA	.	PASS	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296167	39296167	+	Silent	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	123	4	111	0	0.0325203	0	.	.	none	KRTAP4-6,bladder,carcinoma,0,9	KRTAP4-6	46	9	NM_030976	exon1	c.T573C	p.I191I	GGTGGAAATGACA	.	scavenged	Atlas-SNP
TRIM48	79097	hgsc.bcm.edu	37	11	55032663	55032663	+	Missense_Mutation	SNP	T	T	C	rs200778682	byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	293	6	297	3	0.0204778	0.010101	T|0.996;C|0.004	0.004	strong	TRIM48_ENST00000417545,NS,carcinoma,0,4	TRIM48	149	4	NM_024114	exon2	c.T332C	p.I111T	GTGGCATTCACAG	.	scavenged	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	37	12	108956418	108956418	+	Missense_Mutation	SNP	T	T	G	rs10778648	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	8	8	0	0	1	.	T|0.126;G|0.874	0.874	strong	.	ISCU	19	.	NM_213595	exon1	c.T20G	p.F7C	GGGCTTTCCGTCT	.	PASS	Atlas-SNP
UCKL1	54963	hgsc.bcm.edu	37	20	62576008	62576008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	132	38	121	0	0.287879	0	.	.	none	.	UCKL1	28	.	NM_017859	exon6	c.G734A	p.R245H	CGGCCGCGCTCAC	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13845064	13845064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82	28	78	1	0.341463	0.0128205	.	.	none	DNAH5,scalp,malignant_melanoma,-1,1	DNAH5	868	1	NM_001369	exon32	c.T5153C	p.F1718S	ACGAAGAAAAACC	.	scavenged	Atlas-SNP
TTYH2	94015	hgsc.bcm.edu	37	17	72233625	72233625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	45	25	37	0	0.555556	0	.	.	none	.	TTYH2	63	.	NM_032646	exon4	c.G607A	p.D203N	CTATCCGACCAGA	.	PASS	Atlas-SNP
OC90	729330	hgsc.bcm.edu	37	8	133045291	133045291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64	9	80	0	0.140625	0	.	.	none	OC90_ENST00000262283,NS,carcinoma,-1,2	OC90	163	2	NM_001080399	exon11	c.A854G	p.E285G	CCTTTTTCAGTGG	.	PASS	Atlas-SNP
MERTK	10461	hgsc.bcm.edu	37	2	112779062	112779062	+	Silent	SNP	C	C	T	rs149178674		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	88	20	72	0	0.227273	0	C|1.000;T|0.000	0.000	weak	MERTK,colon,carcinoma,0,1	MERTK	112	1	NM_006343	exon17	c.C2253T	p.G751G	CAGTGGCGATTAT	.	PASS	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493791	77493791	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46	10	37	0	0.217391	0	.	.	none	.	IRF2BPL	40	.	NM_024496	exon1	c.G345A	p.Q115Q	CTGCTGCTGTTGC	.	PASS	Atlas-SNP
SULT1C2	6819	hgsc.bcm.edu	37	2	108917339	108917339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	113	34	108	0	0.300885	0	.	.	none	.	SULT1C2	82	.	NM_001056	exon4	c.C323G	p.T108S	TAAAGACTCACCT	.	PASS	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19494536	19494536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70	18	79	0	0.257143	0	.	.	none	.	UBR4	415	.	NM_020765	exon28	c.C3884T	p.T1295I	TCTCCAGTCAACC	.	PASS	Atlas-SNP
POTEH	23784	hgsc.bcm.edu	37	22	16287663	16287663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	780	15	757	10	0.0192308	0.01321	.	.	none	POTEH,colon,carcinoma,+2,2	POTEH	114	2	NM_001136213	exon1	c.A223G	p.S75G	TGCCGCTCCCCCT	.	scavenged	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547093	+	Silent	SNP	A	A	G	rs28513925	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	91	9	55	0	0.0989011	0	A|0.500;G|0.500	0.500	weak	EP400,NS,carcinoma,0,15	EP400	370	15	NM_015409	exon47	c.A8181G	p.Q2727Q	GCAACAACAGCAG	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139191	37139191	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	90	28	101	0	0.311111	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.C804T	p.L268L	CGACCTCAATCGC	.	PASS	Atlas-SNP
TADA2B	93624	hgsc.bcm.edu	37	4	7056150	7056150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	81	22	101	0	0.271605	0	.	.	none	TADA2B,rectum,carcinoma,-1,1	TADA2B	29	1	NM_152293	exon2	c.G632A	p.R211Q	ACGTGCGGAAGCT	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78571048	78571048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	171	68	136	0	0.397661	0	.	.	none	.	NAV3	506	.	NM_014903	exon27	c.G5252T	p.G1751V	ATGCTGGTGACTG	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58978306	58978306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	208	57	158	0	0.274038	0	.	.	none	MPEG1,NS,carcinoma,-1,1	MPEG1	72	1	NM_001039396	exon1	c.G2033A	p.G678D	CGGGTGCCGTAGA	.	PASS	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	37	11	121323082	121323082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	55	12	53	0	0.218182	0	.	.	none	.	SORL1	218	.	NM_003105	exon1	c.C42A	p.F14L	CCCGTTCCTATTC	.	PASS	Atlas-SNP
PRAMEF1	65121	hgsc.bcm.edu	37	1	12854356	12854356	+	Missense_Mutation	SNP	T	T	C	rs80079739	byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	478	33	439	26	0.0690377	0.0592255	T|0.500;C|0.500	0.500	strong	PRAMEF1,NS,carcinoma,-2,2	PRAMEF1	78	2	NM_023013	exon3	c.T580C	p.Y194H	ATTAAATATCTCA	.	scavenged	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23235999	23235999	+	Splice_Site	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75	21	64	0	0.28	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon2	c.325+1G>C	.	TCCTAGGTAAGTG	.	PASS	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	37	3	32022601	32022601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	114	32	86	0	0.280702	0	.	.	none	.	OSBPL10	160	.	NM_017784	exon1	c.C71T	p.A24V	GAGGTAGCACGGC	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1016851	1016851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	668	25	659	23	0.0374251	0.0349014	.	.	none	MUC6_ENST00000421673,NS,carcinoma,+2,2	MUC6	408	2	NM_005961	exon31	c.A5950G	p.M1984V	CAGTCATAGGACC	.	scavenged	Atlas-SNP
GRM2	2912	hgsc.bcm.edu	37	3	51749480	51749480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75	18	57	0	0.24	0	.	.	none	GRM2,caecum,carcinoma,-1,1	GRM2	91	1	NM_000839	exon4	c.G1691T	p.G564V	GCTGGGGCGATGC	.	PASS	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493794	77493794	+	Silent	SNP	T	T	C	rs28718623	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	28	25	0	0	0.892857	.	.	.	weak	.	IRF2BPL	40	.	NM_024496	exon1	c.A342G	p.Q114Q	CTGCTGTTGCTGC	.	PASS	Atlas-SNP
CD79B	974	hgsc.bcm.edu	37	17	62006799	62006799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	77	36	67	1	0.467532	0.0149254	.	.	none	CD79B,NS,lymphoid_neoplasm,0,13	CD79B	38	13	NM_001039933	exon5	c.T589C	p.Y197H	CCTCGTAGGTGTG	.	scavenged	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	37	14	31626395	31626395	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	320	79	194	0	0.246875	0	.	.	none	.	HECTD1	159	.	NM_015382	exon11	c.C1737A	p.I579I	TGCAGTGATTTCC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138625	37138625	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82	42	85	0	0.512195	0	.	.	none	PIM1,NS,carcinoma,+2,2	PIM1	71	2	NM_001243186	exon2	c.C432G	p.Y144X	GGTCTACTCAGGC	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240549	39240549	+	Missense_Mutation	SNP	C	C	G	rs200397258	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	52	4	53	2	0.0769231	0.0377358	.	.	weak	KRTAP4-9_ENST00000377734,right_lower_lobe,carcinoma,0,2	KRTAP4-7	49	2	NM_033061	exon1	c.C91G	p.Q31E	TGCTGTCAGACCA	.	scavenged	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138901	37138901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	52	28	46	0	0.538462	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.C514A	p.P172T	CTGCAGCCTAATG	.	PASS	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	37	5	140554142	140554142	+	Missense_Mutation	SNP	T	T	G	rs13174866	bycluster;by2hit2allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	56	4	43	1	0.0714286	0.0232558	T|1.000;|0.000	.	weak	PCDHB7,NS,carcinoma,0,1	PCDHB7	231	1	NM_018940	exon1	c.T1726G	p.L576V	GAGCCGTTGCCCC	.	scavenged	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	rs200244531		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	396	7	306	2	0.0176768	0.00653595	.	.	weak	TPTE2_ENST00000400230,NS,carcinoma,0,1	TPTE2	225	1	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	scavenged	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	37	17	10304053	10304053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	106	14	74	0	0.132075	0	.	.	none	.	MYH8	346	.	NM_002472	exon27	c.C3389T	p.A1130V	CGGGACGCCCTCT	.	PASS	Atlas-SNP
FAF1	11124	hgsc.bcm.edu	37	1	51121170	51121170	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83	20	90	0	0.240964	0	.	.	none	.	FAF1	64	.	NM_007051	exon8	c.A688T	p.I230F	CGGGGATACTTGT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138380	37138380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	65	8	60	0	0.123077	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,1	PIM1	71	1	NM_001243186	exon1	c.C302T	p.A101V	CGCTTGCCCACCT	.	scavenged	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	37	1	240072488	240072488	+	Silent	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	120	29	106	0	0.241667	0	.	.	none	.	CHRM3	118	.	NM_000740	exon5	c.C1737A	p.V579V	GTCGGTCATTTTT	.	PASS	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	37	2	74642293	74642293	+	Silent	SNP	A	A	G	rs376727648		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	97	14	75	1	0.14433	0.0133333	.	.	weak	C2orf81,NS,carcinoma,0,1	C2orf81	23	1	NM_001145054	exon4	c.T930C	p.S310S	GCCCACAGAGGGG	.	scavenged	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	37	3	47385186	47385186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	57	12	55	0	0.210526	0	.	.	none	.	KLHL18	46	.	NM_025010	exon10	c.G1480A	p.A494T	AGCATTGCCGAGA	.	PASS	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	37	3	154139229	154139229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	134	26	133	0	0.19403	0	.	.	none	.	GPR149	134	.	NM_001038705	exon3	c.G1222A	p.G408R	AAATCCCATAACT	.	PASS	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	37	10	116931103	116931103	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	202	20	171	0	0.0990099	0	.	.	none	.	ATRNL1	219	.	NM_001276282	exon8	c.A1401T	p.L467L	TTCTCTAATAAAA	.	PASS	Atlas-SNP
OR2T2	401992	hgsc.bcm.edu	37	1	248616764	248616764	+	Silent	SNP	C	C	T	rs77869864	byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	356	14	343	6	0.0393258	0.0174927	C|0.500;T|0.500	0.500	strong	OR2T2,NS,carcinoma,0,1	OR2T2	73	1	NM_001004136	exon1	c.C666T	p.I222I	GCACATCCTCCTG	.	scavenged	Atlas-SNP
LIMCH1	22998	hgsc.bcm.edu	37	4	41648713	41648713	+	Missense_Mutation	SNP	C	C	T	rs143733086	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	150	8	174	0	0.0533333	0	C|1.000;T|0.000	0.000	strong	LIMCH1_ENST00000503057,NS,carcinoma,0,1	LIMCH1	233	1	NM_014988	exon12	c.C1468T	p.R490W	TACCTGCGGCAAC	.	PASS	Atlas-SNP
OR5D16	390144	hgsc.bcm.edu	37	11	55606497	55606497	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	317	70	306	2	0.22082	0.00653595	.	.	none	OR5D16,NS,carcinoma,+2,1	OR5D16	94	1	NM_001005496	exon1	c.A270T	p.E90D	TGTAGAAGATAGA	.	scavenged	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37140867	37140867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	155	80	172	0	0.516129	0	.	.	none	PIM1,trunk,malignant_melanoma,-2,1	PIM1	71	1	NM_001243186	exon5	c.A976T	p.M326L	TATGATATGGTGT	.	PASS	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	37	18	63529970	63529970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	167	30	114	0	0.179641	0	.	.	none	.	CDH7	362	.	NM_004361	exon11	c.C1681A	p.P561T	TATCTGCCAATTT	.	PASS	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	37	1	45341357	45341357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125	7	92	0	0.056	0	.	.	none	.	EIF2B3	43	.	NM_020365	exon9	c.T986C	p.L329S	GACAGCAATTTGG	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	37	6	393318	393318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	101	20	68	0	0.19802	0	.	.	none	.	IRF4	65	.	NM_001195286	exon2	c.C166T	p.H56Y	TGGAAGCACGCGG	.	PASS	Atlas-SNP
HKR1	284459	hgsc.bcm.edu	37	19	37853921	37853921	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	53	16	43	0	0.301887	0	.	.	none	.	HKR1	74	.	NM_181786	exon6	c.A1224T	p.S408S	ACATTCAGGAGAG	.	PASS	Atlas-SNP
AMOTL2	51421	hgsc.bcm.edu	37	3	134089710	134089710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	14	51	0	0.202899	0	.	.	none	.	AMOTL2	52	.	NM_016201	exon2	c.G566A	p.R189H	TGGTTGCGGGCCA	.	PASS	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	37	8	25181469	25181469	+	Splice_Site	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	79	14	94	0	0.177215	0	.	.	none	.	DOCK5	167	.	NM_024940	exon17	c.1719+2T>C	.	ATAAGGTGGTGCT	.	PASS	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65480101	65480101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	56	30	36	0	0.535714	0	.	.	none	.	HEPH	224	.	NM_138737	exon19	c.A3358G	p.T1120A	TCTCGAACAGGTA	.	PASS	Atlas-SNP
NAA11	84779	hgsc.bcm.edu	37	4	80246356	80246356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	171	38	196	0	0.222222	0	.	.	none	.	NAA11	43	.	NM_032693	exon1	c.G676A	p.D226N	TGGAATCCGAGCT	.	PASS	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	37	11	89177362	89177362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	104	28	103	0	0.269231	0	.	.	none	NOX4,NS,carcinoma,+1,1	NOX4	101	1	NM_001143836	exon5	c.T388C	p.F130L	CTGAGAAGTTGAG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1268579	1268579	+	Missense_Mutation	SNP	T	T	G	rs190148881	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	138	10	128	1	0.0724638	0.0078125	T|0.984;G|0.016	0.016	strong	MUC5B,NS,carcinoma,0,5	MUC5B	473	5	NM_002458	exon31	c.T10469G	p.V3490G	CCACGGTGACTTC	.	scavenged	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	37	3	89499497	89499497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	120	32	103	0	0.266667	0	.	.	none	EPHA3,NS,carcinoma,0,1	EPHA3	501	1	NM_005233	exon15	c.G2667T	p.K889N	CCTGAAGATCATC	.	PASS	Atlas-SNP
RGPD8	727851	hgsc.bcm.edu	37	2	113147238	113147238	+	Missense_Mutation	SNP	A	A	G	rs3960708		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	68	8	66	3	0.117647	0.0454545	.	.	weak	RGPD8_ENST00000302558,NS,carcinoma,0,2	RGPD8	81	2	NM_001164463	exon20	c.T3284C	p.L1095P	ATTCTTAGTTTGC	.	scavenged	Atlas-SNP
USP32	84669	hgsc.bcm.edu	37	17	58288802	58288802	+	Silent	SNP	A	A	G	rs373498551		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	282	4	260	2	0.0141844	0.00769231	.	.	weak	USP32,NS,carcinoma,0,3	USP32	128	3	NM_032582	exon20	c.T2253C	p.C751C	ACTAACACACTGG	.	scavenged	Atlas-SNP
PCSK2	5126	hgsc.bcm.edu	37	20	17240884	17240884	+	Splice_Site	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	50	10	43	0	0.2	0	.	.	none	.	PCSK2	112	.	NM_001201528	exon3	c.121-1G>T	.	TCCACAGCTTCCC	.	PASS	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187559050	187559050	+	Silent	SNP	A	A	G	rs2370705	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70	12	52	1	0.171429	0.0192308	A|0.462;G|0.538	0.538	strong	FAM171B,colon,carcinoma,0,2	FAM171B	146	2	NM_177454	exon1	c.A150G	p.Q50Q	GCAGCAACAACAA	.	scavenged	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	37	2	167313511	167313511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	187	44	147	0	0.235294	0	.	.	none	SCN7A_ENST00000409855,NS,lymphoid_neoplasm,0,2	SCN7A	410	2	NM_002976	exon10	c.A1159G	p.S387G	ACAAACTTGCCAT	.	PASS	Atlas-SNP
DTX1	1840	hgsc.bcm.edu	37	12	113496132	113496132	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	89	10	71	0	0.11236	0	.	.	none	.	DTX1	83	.	NM_004416	exon1	c.C135T	p.C45C	CGTGTGCCACCAC	.	PASS	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	37	3	32022625	32022625	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	148	33	113	0	0.222973	0	.	.	none	.	OSBPL10	160	.	NM_017784	exon1	c.G47C	p.S16T	CTGCTGCTGTTGC	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152187485	152187485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	272	16	261	0	0.0588235	0	.	.	none	HRNR,trunk,malignant_melanoma,-1,1	HRNR	403	1	NM_001009931	exon3	c.G6620A	p.R2207H	GAAGAACGACCTG	.	scavenged	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	37	2	234581002	234581002	+	Missense_Mutation	SNP	C	C	G	rs76167146	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	149	9	139	3	0.0604027	0.0215827	C|0.943;G|0.057	0.057	strong	UGT1A9,NS,carcinoma,0,1	UGT1A9	79	1	NM_021027	exon1	c.C422G	p.S141C	AGAGTTCTTTTGA	.	scavenged	Atlas-SNP
CD209	30835	hgsc.bcm.edu	37	19	7810925	7810925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	156	6	122	0	0.0384615	0	.	.	none	CD209_ENST00000315599,caecum,carcinoma,+1,2	CD209	166	2	NM_021155	exon4	c.C227T	p.A76V	TAGATCGCGTCTT	.	scavenged	Atlas-SNP
CCDC166	100130274	hgsc.bcm.edu	37	8	144790043	144790043	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46	17	24	0	0.369565	0	.	.	none	.	CCDC166	1	.	NM_001162914	exon1	c.C237T	p.Y79Y	GCTCACGTAGCTG	.	PASS	Atlas-SNP
RAB3D	9545	hgsc.bcm.edu	37	19	11446354	11446354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	71	15	47	0	0.211268	0	.	.	none	RAB3D,NS,carcinoma,+1,1	RAB3D	24	1	NM_004283	exon3	c.G334A	p.A112T	GCACAGCGGCAAA	.	PASS	Atlas-SNP
RHOBTB1	9886	hgsc.bcm.edu	37	10	62631996	62631996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	104	24	116	0	0.230769	0	.	.	none	.	RHOBTB1	61	.	NM_014836	exon10	c.A1868C	p.N623T	TTGTAGTTGGTGC	.	PASS	Atlas-SNP
C1QBP	708	hgsc.bcm.edu	37	17	5336352	5336352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	93	24	68	0	0.258065	0	.	.	none	.	C1QBP	12	.	NM_001212	exon6	c.T832G	p.F278V	TGACAAAACTCTT	.	PASS	Atlas-SNP
BTG1	694	hgsc.bcm.edu	37	12	92537992	92537992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	158	33	93	0	0.208861	0	.	.	none	.	BTG1	30	.	NM_001731	exon2	c.C380T	p.A127V	GGTGAGGCTTCAT	.	PASS	Atlas-SNP
CACNA1F	778	hgsc.bcm.edu	37	X	49083586	49083586	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	45	18	41	0	0.4	0	.	.	none	.	CACNA1F	218	.	NM_001256789	exon9	c.G1122A	p.E374E	GGAGAACTCCCTG	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	37	11	95825374	95825374	+	Silent	SNP	T	T	C	rs112603485		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	195	6	134	4	0.0307692	0.0298507	C|1.000;|0.000	1.000	weak	MAML2,NS,carcinoma,0,1	MAML2	94	1	NM_032427	exon2	c.A1821G	p.Q607Q	CTGCTGTTGCTGC	.	scavenged	Atlas-SNP
BEND5	79656	hgsc.bcm.edu	37	1	49208438	49208438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	98	7	97	0	0.0714286	0	.	.	none	.	BEND5	93	.	NM_024603	exon4	c.G751A	p.A251T	CAATGGCGGGACC	.	PASS	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	37	5	102442522	102442522	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	492	31	430	0	0.0630081	0	.	.	none	.	GIN1	53	.	NM_017676	exon3	c.C231T	p.C77C	TTCATGGCATTCT	.	PASS	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	37	8	17406346	17406346	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	211	49	165	0	0.232227	0	.	.	none	.	SLC7A2	157	.	NM_001164771	exon4	c.G812C	p.S271T	CAGCAAGTGCCAG	.	PASS	Atlas-SNP
ATG4C	84938	hgsc.bcm.edu	37	1	63282305	63282305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	142	33	126	0	0.232394	0	.	.	none	ATG4C_ENST00000317868,NS,carcinoma,-1,4	ATG4C	96	4	NM_178221	exon4	c.G220A	p.G74R	ATTGCAGGAAATG	.	PASS	Atlas-SNP
SLC28A3	64078	hgsc.bcm.edu	37	9	86917281	86917281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	37	10	46	0	0.27027	0	.	.	none	.	SLC28A3	72	.	NM_001199633	exon5	c.G358A	p.A120T	CACAGGCCGAAAT	.	PASS	Atlas-SNP
C15orf43	145645	hgsc.bcm.edu	37	15	45270701	45270701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	498	109	397	0	0.218875	0	.	.	none	.	C15orf43	19	.	NM_152448	exon7	c.G538A	p.D180N	TCAATTGATGCCA	.	PASS	Atlas-SNP
HIST1H4K	8362	hgsc.bcm.edu	37	6	27799065	27799065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	341	128	353	1	0.375367	0.00283286	.	.	none	.	HIST1H4K	15	.	NM_003541	exon1	c.A241G	p.T81A	TGACCGTCTTGCG	.	PASS	Atlas-SNP
HIST2H2AC	8338	hgsc.bcm.edu	37	1	149858804	149858804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	272	68	219	0	0.25	0	.	.	none	HIST2H2AC,NS,carcinoma,-2,3	HIST2H2AC	75	3	NM_003517	exon1	c.C280G	p.L94V	GAGGAACTGAACA	.	PASS	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	37	4	435533	435533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	135	38	111	0	0.281481	0	.	.	none	.	ZNF721	205	.	NM_133474	exon3	c.T2723C	p.I908T	GCATAAAGATTTG	.	PASS	Atlas-SNP
CCND2	894	hgsc.bcm.edu	37	12	4383227	4383227	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83	21	68	0	0.253012	0	.	.	none	.	CCND2	50	.	NM_001759	exon1	c.G21A	p.E7E	CCACGAGGTGGAC	.	PASS	Atlas-SNP
FOXD4L1	200350	hgsc.bcm.edu	37	2	114256859	114256859	+	Missense_Mutation	SNP	C	C	T	rs2757969		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	164	5	179	2	0.0304878	0.0111732	.	.	weak	FOXD4L1,NS,malignant_melanoma,0,2	FOXD4L1	48	2	NM_012184	exon1	c.C26T	p.P9L	AGCGCCCTCGCTC	.	scavenged	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138355	37138355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64	19	65	0	0.296875	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,3	PIM1	71	3	NM_001243186	exon1	c.C277T	p.L93F	GGGATGCTCTTGT	.	PASS	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	37	11	33374879	33374879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	261	54	242	0	0.206897	0	.	.	none	.	HIPK3	92	.	NM_005734	exon17	c.C3413T	p.A1138V	TGTTAGCCTCTCC	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950724	79950724	+	Missense_Mutation	SNP	G	G	C	rs2001675	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	58	14	39	0	0.241379	0	G|0.824;C|0.176	0.176	strong	.	MSH3	129	.	NM_002439	exon1	c.G178C	p.A60P	GCAGCGGCCGCAG	.	PASS	Atlas-SNP
SLC9B2	133308	hgsc.bcm.edu	37	4	103966055	103966055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	383	76	358	0	0.198433	0	.	.	none	NHEDC2,colon,carcinoma,+1,2	.	.	2	NM_178833	exon8	c.C988T	p.R330C	GGTCACGGCTTGG	.	PASS	Atlas-SNP
MCHR1	2847	hgsc.bcm.edu	37	22	41076964	41076964	+	Missense_Mutation	SNP	C	C	T	rs200627010		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82	21	77	1	0.256098	0.012987	.	.	weak	MCHR1,NS,carcinoma,0,1	MCHR1	45	1	NM_005297	exon2	c.C301T	p.R101C	CCTCCTCGCACGG	.	scavenged	Atlas-SNP
KLF4	9314	hgsc.bcm.edu	37	9	110250112	110250112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	39	12	63	0	0.307692	0	.	.	none	.	KLF4	106	.	NM_004235	exon3	c.C563T	p.A188V	ATGTCCGCCAGGT	.	PASS	Atlas-SNP
PPYR1	5540	hgsc.bcm.edu	37	10	47086871	47086871	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	228	32	219	1	0.140351	0.00456621	.	.	none	PPYR1,NS,carcinoma,-2,1	PPYR1	54	1	NM_005972	exon3	c.T88G	p.F30V	TACAACTTCTCTG	.	scavenged	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	37	X	26212458	26212458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	65	30	73	0	0.461538	0	.	.	none	.	MAGEB6	91	.	NM_173523	exon2	c.A495T	p.K165N	CTCAAAATATGAT	.	PASS	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22157027	22157027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	97	5	58	0	0.0515464	0	.	.	none	.	ZNF208	817	.	NM_007153	exon4	c.C809A	p.A270E	AGGATTGCAGATT	.	PASS	Atlas-SNP
ZNF141	7700	hgsc.bcm.edu	37	4	367062	367062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	118	24	104	0	0.20339	0	.	.	none	.	ZNF141	48	.	NM_003441	exon4	c.G836A	p.G279E	ATGCTGGAGAGAA	.	PASS	Atlas-SNP
AIDA	64853	hgsc.bcm.edu	37	1	222885628	222885628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	175	35	168	0	0.2	0	.	.	none	.	AIDA	23	.	NM_022831	exon1	c.G32A	p.R11H	CCCCAGCGCTGCA	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230419	23230419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	81	24	111	0	0.296296	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.C80T	p.A27V	ATCCAGCCTGCGG	.	PASS	Atlas-SNP
ACTG1	71	hgsc.bcm.edu	37	17	79478964	79478964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	154	7	131	0	0.0454545	0	.	.	none	.	ACTG1	55	.	NM_001614	exon3	c.C328G	p.L110V	GGTTCAGGGGGGC	.	PASS	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	37	18	29052745	29052745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	186	40	156	0	0.215054	0	.	.	none	.	DSG3	172	.	NM_001944	exon14	c.A2095G	p.S699G	ATGGAAAGTTCTG	.	PASS	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	37	19	12980018	12980018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	117	30	120	0	0.25641	0	.	.	none	.	MAST1	214	.	NM_014975	exon22	c.A2912T	p.Q971L	CCATCCAGCGCTC	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370998	240370998	+	Silent	SNP	A	A	G	rs199866405	byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	55	12	61	7	0.218182	0.114754	A|0.990;G|0.010	0.010	strong	FMN2,NS,carcinoma,0,2	FMN2	451	2	NM_020066	exon5	c.A2886G	p.A962A	CGGGGCAGGCATA	.	scavenged	Atlas-SNP
ZBED1	9189	hgsc.bcm.edu	37	X	2408513	2408513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	299	29	291	0	0.09699	0	.	.	none	.	ZBED1	64	.	NM_001171135	exon2	c.C248T	p.T83M	TGCTCCGTGTTGC	.	PASS	Atlas-SNP
PARK2	5071	hgsc.bcm.edu	37	6	162206824	162206824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	96	15	75	0	0.15625	0	.	.	none	.	PARK2	96	.	NM_004562	exon7	c.G851C	p.G284A	GAGTAGCCAAGTT	.	PASS	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	37	6	1610903	1610903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	47	13	61	0	0.276596	0	.	.	none	.	FOXC1	19	.	NM_001453	exon1	c.G223A	p.D75N	CCCAAGGACATGG	.	PASS	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	37	1	99470000	99470000	+	Silent	SNP	G	G	A	rs148163708	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66	17	67	0	0.257576	0	G|1.000;T|0.000	.	alt	.	.	.	.	NM_001037317	exon1	c.C228T	p.P76P	GAGCACGGGGACC	.	PASS	Atlas-SNP
DGAT2L6	347516	hgsc.bcm.edu	37	X	69424319	69424319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	79	32	100	0	0.405063	0	.	.	none	.	DGAT2L6	40	.	NM_198512	exon6	c.G812A	p.R271H	TCACTCGCGGATC	.	PASS	Atlas-SNP
UAP1L1	91373	hgsc.bcm.edu	37	9	139973009	139973009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	78	16	82	0	0.205128	0	.	.	none	.	UAP1L1	46	.	NM_207309	exon3	c.C550T	p.H184Y	AGGGAGCACAACT	.	PASS	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	37	19	52222861	52222861	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70	27	53	0	0.385714	0	.	.	none	.	HAS1	61	.	NM_001523	exon2	c.C300T	p.T100T	GGAGATGGTCAGC	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1016849	1016849	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	675	29	664	24	0.042963	0.0361446	.	.	none	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.G5952C	p.M1984I	TGCAGTCATAGGA	.	scavenged	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230436	23230436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66	7	97	0	0.106061	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.G203A	p.G68D	TGTGGGGCAGGTA	.	PASS	Atlas-SNP
MAPKAPK2	9261	hgsc.bcm.edu	37	1	206858801	206858801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	78	18	50	0	0.230769	0	.	.	none	.	MAPKAPK2	45	.	NM_004759	exon1	c.G227A	p.G76D	TCAACGGCAAAGT	.	PASS	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	37	2	74642291	74642291	+	Missense_Mutation	SNP	A	A	G	rs116859876	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92	13	74	0	0.141304	0	A|0.959;G|0.041	0.041	strong	.	C2orf81	23	.	NM_001145054	exon4	c.T932C	p.V311A	CCGCCCACAGAGG	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2816224	2816224	+	Missense_Mutation	SNP	C	C	T	rs151100831	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	73	42	39	0	0.575342	0	C|0.999;A|0.001	.	alt	SRRM2,colon,carcinoma,0,1	SRRM2	263	1	NM_016333	exon11	c.C5695T	p.R1899W	CGGAGACGGTCAA	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274878	203274878	+	Splice_Site	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	79	14	51	0	0.177215	0	.	.	none	.	BTG2	16	.	NM_006763	exon1	c.142+2T>C	.	CACAGGTGAGCGC	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579424	55579424	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	403	61	413	0	0.151365	0	.	.	none	.	OR5L1	145	.	NM_001004738	exon1	c.G482C	p.C161S	ATTTGTGCTTAGC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139038	37139038	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	87	12	100	0	0.137931	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.G651T	p.V217V	GCCGGTGCAAGAT	.	PASS	Atlas-SNP
SLA	6503	hgsc.bcm.edu	37	8	134057342	134057342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	86	27	112	0	0.313953	0	.	.	none	.	SLA	63	.	NM_006748	exon5	c.T491C	p.V164A	TGTCTCACCGACA	.	PASS	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	13356598	13356598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	188	34	162	0	0.180851	0	.	.	none	DLC1_ENST00000511869,colon,carcinoma,+1,3	DLC1	411	3	NM_182643	exon2	c.A983G	p.Q328R	GGTTCCTGGGTGG	.	PASS	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	37	2	40655834	40655834	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	152	37	168	0	0.243421	0	.	.	none	.	SLC8A1	221	.	NM_001252624	exon1	c.A1587G	p.V529V	AATAGTTACAGTG	.	PASS	Atlas-SNP
NDST1	3340	hgsc.bcm.edu	37	5	149901306	149901306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	31	9	33	0	0.290323	0	.	.	none	.	NDST1	79	.	NM_001543	exon2	c.G490A	p.V164M	TACGGCGTGGGCA	.	PASS	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056463	26056463	+	Missense_Mutation	SNP	G	G	A	rs79562358	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	182	72	171	0	0.395604	0	G|0.999;A|0.001	0.001	strong	.	HIST1H1C	80	.	NM_005319	exon1	c.C194T	p.A65V	GCCAACGCTTTTT	.	PASS	Atlas-SNP
RHBDF2	79651	hgsc.bcm.edu	37	17	74471179	74471179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	8	61	0	0.115942	0	.	.	none	RHBDF2,colon,carcinoma,0,1	RHBDF2	57	1	NM_024599	exon10	c.C1247T	p.T416M	AGCAGCGTGATGA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195512531	195512531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	317	6	313	4	0.0189274	0.0127796	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.G5920A	p.A1974T	AGGAAGCGTCGGT	.	scavenged	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77765620	77765620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	12	50	0	0.173913	0	.	.	none	.	ZFHX4	878	.	NM_024721	exon10	c.A6463G	p.S2155G	TCTCCAAGTGAAG	.	PASS	Atlas-SNP
ERG	2078	hgsc.bcm.edu	37	21	39775625	39775625	+	Missense_Mutation	SNP	G	G	A	rs140222241		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	97	27	76	0	0.278351	0	G|1.000;A|0.000	0.000	weak	.	ERG	78	.	NM_001243432	exon6	c.C416T	p.T139M	CATAGCGTAGGAT	.	PASS	Atlas-SNP
FAM205A	259308	hgsc.bcm.edu	37	9	34725438	34725438	+	Missense_Mutation	SNP	A	A	G	rs528197	by2hit2allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	20	17	6	6	0.85	1	.	.	weak	FAM205A_ENST00000378788,NS,carcinoma,0,2	FAM205A	45	2	NM_001141917	exon4	c.T1799C	p.L600S	CGAATCAACTGTT	.	scavenged	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	37	1	16054583	16054583	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	164	32	134	0	0.195122	0	.	.	none	.	PLEKHM2	94	.	NM_015164	exon10	c.C1770T	p.N590N	AGACAACAATCAC	.	PASS	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	37	3	126747903	126747903	+	Silent	SNP	C	C	T	rs369457038	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46	15	59	0	0.326087	0	.	.	weak	PLXNA1,NS,carcinoma,0,1	PLXNA1	185	1	NM_032242	exon25	c.C4737T	p.N1579N	TGACAACGATTGG	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49435941	49435941	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	16	65	0	0.231884	0	.	.	none	MLL2_ENST00000301067,bladder,carcinoma,0,2	MLL2	1173	2	NM_003482	exon28	c.C6040T	p.Q2014X	ACAGCTGGCCCAA	.	PASS	Atlas-SNP
ZNF705G	100131980	hgsc.bcm.edu	37	8	7215921	7215921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	95	26	94	0	0.273684	0	.	.	none	.	ZNF705G	24	.	NM_001164457	exon5	c.A480T	p.E160D	ATGTGGTTCAGTG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276287	203276287	+	Silent	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66	14	58	0	0.212121	0	.	.	none	BTG2,NS,carcinoma,+2,1	BTG2	16	1	NM_006763	exon2	c.C198G	p.R66R	CTACCGCTGCATT	.	PASS	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	37	1	45341356	45341356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125	8	95	0	0.064	0	.	.	none	.	EIF2B3	43	.	NM_020365	exon9	c.G987T	p.L329F	AGACAGCAATTTG	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58979064	58979064	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	73	16	65	0	0.219178	0	.	.	none	.	MPEG1	72	.	NM_001039396	exon1	c.C1275T	p.I425I	CTCGTGGATCTGG	.	PASS	Atlas-SNP
NRF1	4899	hgsc.bcm.edu	37	7	129330335	129330335	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	102	28	79	0	0.27451	0	.	.	none	.	NRF1	40	.	NM_005011	exon5	c.G555T	p.L185L	AGAACTGCCGCCT	.	PASS	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	37	4	143044563	143044563	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	96	25	76	0	0.260417	0	.	.	none	.	INPP4B	132	.	NM_003866	exon21	c.T1899G	p.A633A	CAATCCAGCAAGC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230439	23230439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64	15	94	0	0.234375	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.G206A	p.R69K	GGGGCAGGTAAGG	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100679783	100679783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69	8	68	5	0.115942	0.0735294	.	.	none	MUC17,NS,carcinoma,-1,1	MUC17	804	1	NM_001040105	exon3	c.A5086C	p.T1696P	AGTATAACTGTCA	.	scavenged	Atlas-SNP
ARC	23237	hgsc.bcm.edu	37	8	143695199	143695199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	27	6	31	0	0.222222	0	.	.	none	.	ARC	34	.	NM_015193	exon1	c.G434A	p.R145H	GTGTGGCGGGCTG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274867	203274867	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	86	15	56	0	0.174419	0	.	.	none	BTG2,lymph_node,lymphoid_neoplasm,-1,2	BTG2	16	2	NM_006763	exon1	c.G133C	p.A45P	CAGGAGGCACTCA	.	PASS	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187559053	187559053	+	Silent	SNP	A	A	G	rs2370706	byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75	9	50	0	0.12	0	A|0.417;G|0.583	0.583	strong	FAM171B,NS,neuroblastoma,0,1	FAM171B	146	1	NM_177454	exon1	c.A153G	p.Q51Q	GCAACAACAACAA	.	PASS	Atlas-SNP
MCC	4163	hgsc.bcm.edu	37	5	112824054	112824054	+	Missense_Mutation	SNP	C	C	T	rs199741976		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	58	13	21	3	0.224138	0.142857	.	.	weak	MCC_ENST00000408903,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	MCC	234	1	NM_001085377	exon1	c.G58A	p.G20S	TGCCGCCGCCGCC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509650	195509650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	215	8	208	3	0.0372093	0.0144231	.	.	none	MUC4_ENST00000463781,trunk,malignant_melanoma,-1,2	MUC4	1505	2	NM_018406	exon2	c.T8801C	p.L2934P	GAGGAAAGGCTGG	.	scavenged	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46021011	46021011	+	Missense_Mutation	SNP	A	A	G	rs79048509		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	291	30	247	16	0.103093	0.0647773	A|0.250;G|0.750	0.750	weak	KRTAP10-7,trunk,malignant_melanoma,0,1	KRTAP10-7	41	1	NM_198689	exon2	c.A475G	p.I159V	GTGCCCATCTGCT	.	scavenged	Atlas-SNP
OR10Q1	219960	hgsc.bcm.edu	37	11	57995634	57995634	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70	12	62	0	0.171429	0	.	.	none	.	OR10Q1	79	.	NM_001004471	exon1	c.C714A	p.G238G	GCGGCGGCCCTCG	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92	9	51	1	0.0978261	0.0196078	.	.	weak	EP400,NS,carcinoma,0,20	EP400	370	20	NM_015409	exon47	c.G8175A	p.Q2725Q	GCAGCAGCAACAA	.	scavenged	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	37	8	2057240	2057240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	190	38	171	0	0.2	0	.	.	none	MYOM2,NS,carcinoma,0,1	MYOM2	251	1	NM_003970	exon25	c.G3098T	p.R1033L	GGGTTCGCTTCTG	.	PASS	Atlas-SNP
KRTAP1-4	728255	hgsc.bcm.edu	37	17	39186028	39186028	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	144	40	145	0	0.277778	0	.	.	none	.	KRTAP1-4	4	.	NM_001257305	exon1	c.C303A	p.S101S	ACAGTAGGACGGG	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	37	MT	15884	15884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	20	10	32	0	0.5	0	.	.	none	.	.	.	.	ENST00000361789	exon1	c.G1138A	p.A380T	AAATGGGCCTGTC	.	PASS	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	37	X	114426552	114426552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	37	16	30	0	0.432432	0	.	.	none	.	RBMXL3	83	.	NM_001145346	exon1	c.G2548A	p.D850N	AGTTACGACCGGA	.	PASS	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	37	1	24996752	24996752	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	202	57	222	0	0.282178	0	.	.	none	.	SRRM1	81	.	NM_005839	exon15	c.A2346T	p.P782P	GTCACCAGCTGTA	.	PASS	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	37	15	91835705	91835705	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	218	53	211	0	0.243119	0	.	.	none	.	SV2B	98	.	NM_014848	exon14	c.C1975T	p.L659L	ATCCTTCTGGCTG	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547138	132547138	+	Silent	SNP	A	A	G	rs111782215	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	122	11	86	0	0.0901639	0	A|0.990;G|0.010	0.010	strong	EP400,NS,carcinoma,0,5	EP400	370	5	NM_015409	exon47	c.A8226G	p.Q2742Q	GCAGCAACAGCAG	.	PASS	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	37	2	157407178	157407178	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	119	25	104	0	0.210084	0	.	.	none	.	GPD2	59	.	NM_001083112	exon8	c.G891T	p.V297V	CTCTGTGCGCAAA	.	PASS	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	37	17	18907061	18907061	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	76	17	66	0	0.223684	0	.	.	none	.	FAM83G	51	.	NM_001039999	exon2	c.C294T	p.G98G	TTCCTCGCCGTCG	.	PASS	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	37	5	66462402	66462402	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	136	36	99	0	0.264706	0	.	.	none	.	MAST4	218	.	NM_001164664	exon29	c.C7395T	p.F2465F	CAGCTTCCCTGAA	.	PASS	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37424860	37424860	+	Missense_Mutation	SNP	G	G	T	rs180177304	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46	18	55	0	0.391304	0	.	.	alt	.	GRHPR	35	.	NM_012203	exon2	c.G102T	p.W34C	GCAGTGGGACTCG	.	PASS	Atlas-SNP
