Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
SPRR3	6707	hgsc.bcm.edu	37	1	152975659	152975682	+	In_Frame_Del	DEL	GAGCCAGGCTGTACCAAGGTCCCT	GAGCCAGGCTGTACCAAGGTCCCT	-	rs67156933		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	GAGCCAGGCTGTACCAAGGTCCCT	GAGCCAGGCTGTACCAAGGTCCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	113	36	78	0	0.318584	0	.	.	weak	SPRR3,colon,carcinoma,+2,1	SPRR3	45	1	NM_001097589	exon2	c.162_185del	p.54_62del	.	.	PASS	Atlas-Indel
SLC35A2	7355	hgsc.bcm.edu	37	X	48762343	48762346	+	Frame_Shift_Del	DEL	GCCG	GCCG	-	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	GCCG	GCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	47	13	54	.	0.277	.	.	.	none	.	SLC35A2	46	.	NM_001042498	exon4	c.841_844del	p.281_282del	.	.	PASS	Pindel,Atlas-Indel
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	rs200984527		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	42	18	59	0	0.428571	0	.	.	weak	.	NEFH	178	.	NM_021076	exon4	c.1951_1974del	p.651_658del	.	.	PASS	Atlas-Indel
FRAS1	80144	hgsc.bcm.edu	37	4	79176419	79176419	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	133	27	194	0	0.203008	0	.	.	none	.	FRAS1	779	.	NM_025074	exon6	c.492delT	p.H164fs	.	.	PASS	Atlas-Indel
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382417	24382418	+	In_Frame_Ins	INS	-	-	CTGCTGCTC	rs72220486	alternate_allele	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	80	40	91	0	0.5	0	.	.	alt	.	.	.	.	NM_001136234	exon1	c.1540_1541insCTGCTGCTC	p.A514delinsAAAP	.	.	PASS	Atlas-Indel
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346593	39346595	+	In_Frame_Del	DEL	CCT	CCT	-	rs377187211	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	64	25	70	0	0.390625	0	.	.	weak	KRTAP9-1_ENST00000398470,colon,carcinoma,0,2	KRTAP9-1	34	2	NM_001190460	exon1	c.454_456del	p.152_152del	.	.	PASS	Atlas-Indel
C11orf40	143501	hgsc.bcm.edu	37	11	4592706	4592707	+	Frame_Shift_Ins	INS	-	-	AC	rs141600462	bycluster;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	91	29	113	.	0.319	.	-|0.377;AC|0.623	0.623	strong	.	C11orf40	37	.	NM_144663	exon4	c.601_602insGT	p.M201fs	.	.	PASS	Pindel
MKI67	4288	hgsc.bcm.edu	37	10	129906253	129906253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	265	3	335	0	0.0113208	0	.	.	none	MKI67,rectum,carcinoma,+1,2	MKI67	363	2	NM_002417	exon13	c.C3851A	p.A1284E	CTGCACGCTAAGA	.	scavenged	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	37	10	95169	95169	+	Missense_Mutation	SNP	T	T	G	rs199817418	byfrequency	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	46	5	39	0	0.108696	0	T|0.980;G|0.020	0.020	strong	TUBB8,colon,carcinoma,0,2	TUBB8	62	2	NM_177987	exon1	c.A10C	p.I4L	GCACGATCTCCCT	.	scavenged	Atlas-SNP
RGPD3	653489	hgsc.bcm.edu	37	2	107049632	107049632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	426	5	497	2	0.0117371	0.00402414	.	.	none	RGPD3_ENST00000304514,bladder,carcinoma,+1,6	RGPD3	316	6	NM_001144013	exon16	c.C2315T	p.A772V	GAATCCGCATTTC	.	scavenged	Atlas-SNP
TBC1D29	26083	hgsc.bcm.edu	37	17	28890361	28890361	+	Missense_Mutation	SNP	G	G	A	rs372824382	alternate_allele	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	66	2	101	0	0.030303	0	.	.	alt	TBC1D29,NS,carcinoma,0,3	TBC1D29	19	3	NM_015594	exon5	c.G371A	p.R124Q	TGAGCCGGGGAGA	.	scavenged	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	65	7	70	2	0.107692	0.0285714	A|0.500;T|0.500	0.500	weak	KRTAP4-8,rectum,carcinoma,0,8	KRTAP4-8	57	8	NM_031960	exon1	c.T283A	p.C95S	AGATGCAGCAGCT	.	scavenged	Atlas-SNP
TTK	7272	hgsc.bcm.edu	37	6	80751906	80751906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	166	4	279	0	0.0240964	0	.	.	none	TTK_ENST00000369798,NS,carcinoma,+1,7	TTK	199	7	NM_003318	exon22	c.G2561A	p.R854K	AAAAAAGGGGAAA	.	scavenged	Atlas-SNP
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32487353	32487353	+	Missense_Mutation	SNP	T	T	C	rs114293611	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	84	12	79	12	0.142857	0.151899	T|0.525;C|0.475	0.475	strong	HLA-DRB5,NS,lymphoid_neoplasm,0,1	HLA-DRB5	31	1	NM_002125	exon3	c.A446G	p.N149S	AAACCATTCACAG	.	scavenged	Atlas-SNP
RNASEH2B	79621	hgsc.bcm.edu	37	13	51530597	51530597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	302	8	338	3	0.0264901	0.00887574	.	.	none	RNASEH2B,NS,carcinoma,0,2	RNASEH2B	26	2	NM_024570	exon11	c.T926A	p.I309N	AAAAAATTGGAAA	.	scavenged	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	37	4	22446632	22446632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	142	28	189	0	0.197183	0	.	.	none	GPR125,NS,carcinoma,+2,1	GPR125	118	1	NM_145290	exon6	c.C670A	p.P224T	TGACTGGTTGGGC	.	PASS	Atlas-SNP
TLL2	7093	hgsc.bcm.edu	37	10	98157024	98157024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	46	14	62	0	0.304348	0	.	.	none	.	TLL2	122	.	NM_012465	exon11	c.G1303A	p.V435I	TGGAGACGAGGGG	.	PASS	Atlas-SNP
CST2	1470	hgsc.bcm.edu	37	20	23805952	23805952	+	Silent	SNP	G	G	C	rs146039211	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	54	3	58	3	0.0555556	0.0517241	G|0.999;A|0.001	.	alt	CST2,NS,adenoma,-1,1	CST2	39	1	NM_001322	exon2	c.C237G	p.G79G	CACCCCGCCCACG	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152285144	152285144	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	161	2	155	0	0.0124224	0	.	.	none	FLG,NS,carcinoma,+1,1	FLG	900	1	NM_002016	exon3	c.C2218A	p.R740R	ACCCTCGGTGTCC	.	scavenged	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	336	4	404	0	0.0119048	0	.	.	weak	PABPC1,NS,carcinoma,0,2	PABPC1	76	2	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	scavenged	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154842330	154842330	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	97	4	86	2	0.0412371	0.0232558	.	.	none	KCNN3,rectum,carcinoma,0,1	KCNN3	141	1	NM_001204087	exon1	c.A111G	p.Q37Q	CTGCTGTTGCTGC	.	scavenged	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	37	6	31239613	31239613	+	Missense_Mutation	SNP	C	C	T	rs2308538	bycluster;byfrequency	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	64	7	55	1	0.109375	0.0181818	T|0.155;C|0.845	0.155	strong	HLA-C_ENST00000383329,NS,carcinoma,0,2	HLA-C	92	2	NM_002117	exon2	c.G106A	p.V36M	GGGACACGGCGGT	.	scavenged	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57971203	57971203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	184	12	223	4	0.0652174	0.0179372	.	.	none	OR1S2,NS,carcinoma,0,3	OR1S2	119	3	NM_001004459	exon1	c.G451C	p.A151P	ACCTGGCCCGCAT	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017068	1017068	+	Silent	SNP	C	C	T	rs78992004		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	413	47	571	68	0.113801	0.119089	C|0.500;T|0.500	0.500	weak	MUC6,NS,carcinoma,-1,1	MUC6	408	1	NM_005961	exon31	c.G5733A	p.T1911T	TTTGGCCGTGCTA	.	scavenged	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	37	17	9745901	9745901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	33	7	50	0	0.212121	0	.	.	none	GLP2R,rectum,carcinoma,0,1	GLP2R	90	1	NM_004246	exon4	c.G472A	p.E158K	GACTCCGAATGCT	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121282320	121282320	+	Silent	SNP	C	C	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	65	16	84	0	0.246154	0	.	.	none	COL14A1,NS,carcinoma,+1,1	COL14A1	292	1	NM_021110	exon26	c.C3120A	p.S1040S	TGGATCCTGGAGC	.	PASS	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57970967	57970967	+	Silent	SNP	G	G	A	rs138762515		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	76	11	108	9	0.144737	0.0833333	G|0.999;A|0.001	0.001	weak	OR1S2,NS,carcinoma,0,2	OR1S2	119	2	NM_001004459	exon1	c.C687T	p.F229F	ATAGGAGAAGAAG	.	scavenged	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	37	18	43514836	43514836	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	156	28	126	0	0.179487	0	.	.	none	.	EPG5	199	.	NM_020964	exon11	c.C2196T	p.S732S	GTTCTCGCTCTCC	.	PASS	Atlas-SNP
ACE2	59272	hgsc.bcm.edu	37	X	15612969	15612969	+	Missense_Mutation	SNP	C	C	T	rs201900069	bycluster;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	58	33	57	0	0.568965	0	C|0.999;T|0.001	0.001	strong	.	ACE2	87	.	NM_021804	exon3	c.G344A	p.R115Q	CGTACCCGTTTGC	.	PASS	Atlas-SNP
GPR171	29909	hgsc.bcm.edu	37	3	150916504	150916504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	242	39	231	0	0.161157	0	.	.	none	.	GPR171	36	.	NM_013308	exon3	c.A670G	p.N224D	GTATGTTGATGAG	.	PASS	Atlas-SNP
CBWD6	644019	hgsc.bcm.edu	37	9	69247582	69247582	+	Splice_Site	SNP	G	G	C	rs76283403		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	225	7	187	2	0.0311111	0.0106952	G|0.500;C|0.500	0.500	weak	CBWD6,NS,neuroblastoma,0,1	CBWD6	19	1	NM_001085457	exon6	c.431-1C>G	.	CTGCACGTGAAAA	.	scavenged	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888050	52888050	+	Missense_Mutation	SNP	A	A	G	rs76053634	bycluster;byfrequency	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	32	5	50	4	0.15625	0.08	A|0.867;G|0.133	0.133	strong	ZNF880,colon,carcinoma,0,2	ZNF880	45	2	NM_001145434	exon4	c.A1217G	p.Q406R	GAGAGCAACCTTA	.	scavenged	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31324277	31324277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	55	22	67	0	0.4	0	.	.	none	.	ASXL3	405	.	NM_030632	exon12	c.G4465A	p.V1489I	CTGACTGTCTCCG	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144857010	144857010	+	Missense_Mutation	SNP	T	T	C	rs3853916	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	562	12	557	6	0.0213523	0.010772	.	.	weak	PDE4DIP,NS,carcinoma,0,1	PDE4DIP	817	1	NM_014644	exon40	c.A6475G	p.T2159A	GAGGGGTCTTCAT	.	scavenged	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40376323	40376323	+	Missense_Mutation	SNP	A	A	G	rs377439998		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	64	5	67	3	0.078125	0.0447761	.	.	weak	FCGBP,NS,carcinoma,0,3	FCGBP	416	3	NM_003890	exon25	c.T11981C	p.V3994A	TAGTAGACACCAT	.	scavenged	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	6978310	6978310	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	151	29	123	0	0.192053	0	.	.	none	LAMA1,NS,carcinoma,-1,1	LAMA1	458	1	NM_005559	exon43	c.G6075A	p.T2025T	CCTCAGCGTGCTC	.	PASS	Atlas-SNP
MLXIP	22877	hgsc.bcm.edu	37	12	122612486	122612486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	41	13	57	0	0.317073	0	.	.	none	.	MLXIP	46	.	NM_014938	exon3	c.G577T	p.V193L	GGCTCTGTGGACG	.	PASS	Atlas-SNP
LILRA1	11024	hgsc.bcm.edu	37	19	55106239	55106239	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	94	7	116	1	0.0744681	0.00862069	.	.	none	LILRA1,NS,carcinoma,0,3	LILRA1	105	3	NM_006863	exon4	c.G180A	p.L60L	CCGTCTGTATAGA	.	scavenged	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	37	3	183273174	183273174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	152	66	160	0	0.434211	0	.	.	none	.	KLHL6	100	.	NM_130446	exon1	c.C268T	p.L90F	CGGCAAGCACCAC	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49435033	49435033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	29	10	42	0	0.344828	0	.	.	none	MLL2_ENST00000301067,NS,lymphoid_neoplasm,0,2	MLL2	1173	2	NM_003482	exon31	c.C6520T	p.Q2174X	GGTCCTGCGAAGG	.	PASS	Atlas-SNP
PRKG1	5592	hgsc.bcm.edu	37	10	54048530	54048530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	136	33	167	0	0.242647	0	.	.	none	.	PRKG1	167	.	NM_006258	exon15	c.T1754C	p.I585T	ACATCATATTGAG	.	PASS	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	37	9	107571802	107571802	+	Missense_Mutation	SNP	C	C	T	rs189206655	bycluster;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	136	22	169	1	0.161765	0.00591716	C|1.000;T|0.000	0.000	strong	ABCA1,caecum,carcinoma,0,4	ABCA1	244	4	NM_005502	exon30	c.G4219A	p.A1407T	TGAGGGCGTTTAA	.	scavenged	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	37	18	21508671	21508671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	174	20	130	0	0.114943	0	.	.	none	.	LAMA3	397	.	NM_198129	exon64	c.C8378T	p.A2793V	TCCAGGCCTCATT	.	PASS	Atlas-SNP
PTCHD3	374308	hgsc.bcm.edu	37	10	27703150	27703150	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	55	18	87	0	0.327273	0	.	.	none	.	PTCHD3	140	.	NM_001034842	exon1	c.G30A	p.P10P	CGGCCCCGGCCTG	.	PASS	Atlas-SNP
BRAP	8315	hgsc.bcm.edu	37	12	112103531	112103531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	78	17	113	0	0.217949	0	.	.	none	.	BRAP	42	.	NM_006768	exon6	c.C808T	p.R270C	CCATGCGCTCCAG	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	37	MT	15172	15172	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	8	4	6	0	0.5	0	.	.	none	.	.	.	.	ENST00000361789	exon1	c.G426A	p.G142G	CTGAGGGGCCACA	.	PASS	Atlas-SNP
UBC	7316	hgsc.bcm.edu	37	12	125397358	125397358	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	377	6	465	6	0.0159151	0.0129032	.	.	none	UBC,NS,carcinoma,0,2	UBC	79	2	NM_021009	exon2	c.A960G	p.E320E	CTCCACTTCGAGA	.	scavenged	Atlas-SNP
TRIM48	79097	hgsc.bcm.edu	37	11	55032663	55032663	+	Missense_Mutation	SNP	T	T	C	rs200778682	byfrequency	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	499	12	621	9	0.0240481	0.0144928	T|0.996;C|0.004	0.004	strong	TRIM48_ENST00000417545,NS,carcinoma,0,4	TRIM48	149	4	NM_024114	exon2	c.T332C	p.I111T	GTGGCATTCACAG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	129	3	126	5	0.0232558	0.0396825	G|0.998;A|0.002	0.002	weak	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	scavenged	Atlas-SNP
ZNF799	90576	hgsc.bcm.edu	37	19	12501466	12501466	+	Silent	SNP	A	A	G	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	317	4	360	1	0.0126183	0.00277778	.	.	none	ZNF799_ENST00000430385,NS,malignant_melanoma,0,2	ZNF799	111	2	NM_001080821	exon4	c.T1746C	p.H582H	TCCAGTATGAGTT	.	scavenged	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	37	20	46254225	46254225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	83	4	110	0	0.0481928	0	.	.	none	.	NCOA3	156	.	NM_181659	exon5	c.G357T	p.Q119H	ACTTCAGGCAAGT	.	PASS	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	37	18	333015	333015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	172	20	156	0	0.116279	0	.	.	none	.	COLEC12	121	.	NM_130386	exon7	c.G1945A	p.E649K	GTTCCTCTCTAGT	.	PASS	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	37	20	46279839	46279839	+	Silent	SNP	G	G	A	rs2664555		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	61	11	53	1	0.180328	0.0188679	.	.	weak	NCOA3,rectum,carcinoma,0,1	NCOA3	156	1	NM_181659	exon20	c.G3765A	p.Q1255Q	GCAACAGCAGCAG	.	scavenged	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	37	7	79082348	79082348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	27	12	30	0	0.444444	0	.	.	none	.	MAGI2	246	.	NM_012301	exon1	c.T289A	p.C97S	TGACACACTTGAG	.	PASS	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30955191	30955191	+	Silent	SNP	G	G	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	48	3	72	0	0.0625	0	.	.	none	MUC21,NS,carcinoma,0,2	MUC21	98	2	NM_001010909	exon2	c.G1239C	p.V413V	CACAGTGTCCAGT	.	scavenged	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	37	7	143049009	143049009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	102	16	114	0	0.156863	0	.	.	none	.	CLCN1	141	.	NM_000083	exon23	c.C2918T	p.P973L	AGGGCCCCAGCCT	.	PASS	Atlas-SNP
SPANXN2	494119	hgsc.bcm.edu	37	X	142795338	142795338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	139	37	183	0	0.266187	0	.	.	none	.	SPANXN2	67	.	NM_001009615	exon2	c.G340T	p.D114Y	CCAGGTCTTCGTC	.	PASS	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	37	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	62	5	68	0	0.0806452	0	.	.	weak	.	GRIA3	386	.	NM_001256743	exon3	c.C385G	p.P129A	GGTGGGCCCGCCA	.	PASS	Atlas-SNP
POF1B	79983	hgsc.bcm.edu	37	X	84586012	84586012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	185	93	200	0	0.502703	0	.	.	none	.	POF1B	77	.	NM_024921	exon7	c.G797A	p.R266H	TTCTTACGGCTCA	.	PASS	Atlas-SNP
OR2T27	403239	hgsc.bcm.edu	37	1	248813483	248813483	+	Missense_Mutation	SNP	C	C	G	rs1782239	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	27	3	65	5	0.111111	0.0769231	C|0.500;G|0.500	0.500	weak	OR2T27,trunk,malignant_melanoma,0,1	OR2T27	52	1	NM_001001824	exon1	c.G703C	p.G235R	CCTTTCCCCTCCC	.	scavenged	Atlas-SNP
RC3H1	149041	hgsc.bcm.edu	37	1	173951933	173951933	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	158	73	155	0	0.462025	0	.	.	none	.	RC3H1	110	.	NM_172071	exon4	c.T700A	p.F234I	GAGGAAACCGTGG	.	PASS	Atlas-SNP
FAM8A1	51439	hgsc.bcm.edu	37	6	17608511	17608511	+	Nonsense_Mutation	SNP	C	C	T	rs200041366		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	110	5	132	2	0.0454545	0.0151515	.	.	weak	FAM8A1,lower_third,carcinoma,-1,1	FAM8A1	26	1	NM_016255	exon5	c.C1183T	p.R395X	CATAATCGAACAG	.	scavenged	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	37	3	140275464	140275464	+	Missense_Mutation	SNP	C	C	T	rs368537354		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	89	13	99	0	0.146067	0	.	.	weak	CLSTN2,caecum,carcinoma,-1,2	CLSTN2	190	2	NM_022131	exon11	c.C1784T	p.T595M	TCCCAACGGCGGG	.	PASS	Atlas-SNP
CHIT1	1118	hgsc.bcm.edu	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	bycluster;byfrequency	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	46	3	43	0	0.0652174	0	C|0.989;T|0.011	0.011	strong	CHIT1,colon,carcinoma,0,2	CHIT1	61	2	NM_003465	exon10	c.G1073A	p.W358X	AGTGCCCAGACCA	.	scavenged	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	37	5	256455	256455	+	Missense_Mutation	SNP	C	C	G	rs1126697	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	107	3	122	0	0.0280374	0	C|0.998;G|0.002	0.002	weak	SDHA,NS,adenocarcinoma,0,1	SDHA	80	1	NM_004168	exon15	c.C1915G	p.L639V	GTCACTCTGGAAT	.	scavenged	Atlas-SNP
TPO	7173	hgsc.bcm.edu	37	2	1491693	1491693	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	62	21	75	0	0.33871	0	.	.	none	.	TPO	224	.	NM_001206744	exon10	c.G1698A	p.V566V	CTTTGTGCTGTCC	.	PASS	Atlas-SNP
EBLN2	55096	hgsc.bcm.edu	37	3	73111480	73111480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	144	8	150	0	0.0555556	0	.	.	none	.	EBLN2	18	.	NM_018029	exon1	c.A248C	p.N83T	GGAAAAACAGACA	.	PASS	Atlas-SNP
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46012160	46012160	+	Missense_Mutation	SNP	G	G	C	rs62220887	bycluster;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	66	19	74	22	0.287879	0.297297	G|0.911;C|0.089	0.089	strong	KRTAP10-6,trunk,malignant_melanoma,0,1	KRTAP10-6	57	1	NM_198688	exon1	c.C206G	p.P69R	GTCACTGGGCAGC	.	scavenged	Atlas-SNP
CAMSAP2	23271	hgsc.bcm.edu	37	1	200818866	200818866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	185	97	153	0	0.524324	0	.	.	none	CAMSAP1L1,NS,carcinoma,+1,1	.	.	1	NM_203459	exon11	c.G2969A	p.R990Q	TGAATCGAACCTT	.	PASS	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26157030	26157030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	72	16	100	0	0.222222	0	.	.	none	.	HIST1H1E	69	.	NM_005321	exon1	c.C412T	p.P138S	AAGAAGCCCAAGA	.	PASS	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	41054902	41054902	+	Silent	SNP	T	T	G	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	154	44	192	0	0.285714	0	.	.	none	.	.	.	.	NM_173489	exon11	c.A1074C	p.T358T	TTTGACTGTTCTT	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547093	+	Silent	SNP	A	A	G	rs28513925	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	52	5	73	1	0.0961538	0.0136986	A|0.500;G|0.500	0.500	weak	EP400,NS,carcinoma,0,15	EP400	370	15	NM_015409	exon47	c.A8181G	p.Q2727Q	GCAACAACAGCAG	.	scavenged	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	63	24	70	0	0.380952	0	C|0.500;T|0.500	0.500	weak	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1	34	2	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	scavenged	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2977662	2977662	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	62	14	76	0	0.225806	0	.	.	none	.	CARD11	339	.	NM_032415	exon8	c.T1022A	p.L341Q	TCCTCCAGGTACT	.	PASS	Atlas-SNP
UGT2B7	7364	hgsc.bcm.edu	37	4	69978319	69978319	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	112	35	140	0	0.3125	0	.	.	none	.	UGT2B7	79	.	NM_001074	exon6	c.G1455A	p.W485X	CACCTGGTTCCAG	.	PASS	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22182158	22182158	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	39	8	58	0	0.205128	0	.	.	none	.	HSPG2	311	.	NM_005529	exon46	c.C5712T	p.G1904G	CTGGCCGCCGGGG	.	PASS	Atlas-SNP
GOLGA6B	55889	hgsc.bcm.edu	37	15	72954595	72954595	+	Missense_Mutation	SNP	A	A	G	rs74430870		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	213	5	284	4	0.0234742	0.0140845	A|0.500;G|0.500	0.500	weak	GOLGA6B,NS,carcinoma,0,2	GOLGA6B	30	2	NM_018652	exon11	c.A850G	p.K284E	TCAGCTAAGCCCC	.	scavenged	Atlas-SNP
OR2F2	135948	hgsc.bcm.edu	37	7	143633276	143633276	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	56	4	40	0	0.0714286	0	.	.	none	.	OR2F2	63	.	NM_001004685	exon1	c.T951C	p.T317T	GGGAACTTGACTC	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367	bycluster;byhapmap;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	29	5	37	1	0.172414	0.027027	A|0.646;T|0.354	0.354	strong	KRTAP4-5,colon,carcinoma,0,3	KRTAP4-5	34	3	NM_033188	exon1	c.T235A	p.C79S	AGCAGCAGGGGCG	.	scavenged	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	37	X	83357092	83357092	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	178	92	248	0	0.516854	0	.	.	none	.	RPS6KA6	116	.	NM_014496	exon18	c.G1729T	p.G577X	GAAGTCCATTTTC	.	PASS	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346622	39346622	+	Missense_Mutation	SNP	T	T	A	rs79470847	bycluster	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	80	24	77	0	0.3	0	T|0.500;A|0.500	0.500	weak	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1	34	2	NM_001190460	exon1	c.T484A	p.C162S	CAGCCTTGCTGCC	.	PASS	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	37	8	124382182	124382182	+	Silent	SNP	A	A	G	rs139406007	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	152	3	213	0	0.0197368	0	A|0.986;G|0.014	0.014	strong	ATAD2,caecum,carcinoma,0,1	ATAD2	160	1	NM_014109	exon7	c.T810C	p.D270D	ATCATCATCGTCA	.	scavenged	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65425591	65425591	+	Silent	SNP	T	T	C	rs79701778		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	93	5	90	2	0.0537634	0.0222222	T|0.500;C|0.500	0.500	weak	MAGI1_ENST00000402939,NS,carcinoma,0,3	MAGI1	481	3	NM_001033057	exon9	c.A1233G	p.Q411Q	CTGCTGTTGCTGC	.	scavenged	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	37	2	80801387	80801387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	106	29	127	0	0.273585	0	.	.	none	CTNNA2_ENST00000466387,NS,carcinoma,+1,3	CTNNA2	462	3	NM_001164883	exon13	c.G1841A	p.R614H	CCTCTCGCCTGGT	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	37	2	160285738	160285738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	463	102	561	2	0.220302	0.00356506	.	.	none	BAZ2B,NS,carcinoma,-1,1	BAZ2B	196	1	NM_013450	exon11	c.G2228A	p.R743H	AGTTCACGTTCAT	.	scavenged	Atlas-SNP
ZC3H7A	29066	hgsc.bcm.edu	37	16	11855353	11855353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	106	40	113	0	0.377358	0	.	.	none	ZC3H7A,NS,carcinoma,-1,1	ZC3H7A	72	1	NM_014153	exon19	c.G2228A	p.R743Q	GCACGCCGGTCTT	.	PASS	Atlas-SNP
MESP2	145873	hgsc.bcm.edu	37	15	90320144	90320144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	18	6	9	0	0.333333	0	.	.	none	.	MESP2	20	.	NM_001039958	exon1	c.C556G	p.Q186E	CAGGGGCAGGGGC	.	PASS	Atlas-SNP
C11orf84	144097	hgsc.bcm.edu	37	11	63585573	63585573	+	Missense_Mutation	SNP	G	G	A	rs373118347		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	43	11	55	0	0.255814	0	.	.	weak	.	C11orf84	33	.	NM_138471	exon2	c.G424A	p.V142M	CAAGACGTGAGAG	.	PASS	Atlas-SNP
MPP7	143098	hgsc.bcm.edu	37	10	28420542	28420542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	97	24	85	0	0.247423	0	.	.	none	.	MPP7	60	.	NM_173496	exon8	c.G394A	p.D132N	CCTCATCGTCAAT	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	72	6	86	2	0.0833333	0.0232558	.	.	weak	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27	337	10	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505858	195505858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	127	4	120	1	0.0314961	0.00833333	.	.	none	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4	1505	3	NM_018406	exon2	c.C12593T	p.T4198I	GAGGAAGTGTCGG	.	scavenged	Atlas-SNP
TUBA3C	7278	hgsc.bcm.edu	37	13	19751301	19751301	+	Silent	SNP	C	C	T	rs140548354		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	92	8	133	5	0.0869565	0.037594	C|0.999;T|0.001	0.001	weak	TUBA3C,bladder,carcinoma,-2,1	TUBA3C	166	1	NM_006001	exon4	c.G822A	p.P274P	GATGACCGGGGCG	.	scavenged	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	37	5	480029	480029	+	Silent	SNP	C	C	T	rs147340203	bycluster;by1000genomes	TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	35	7	50	0	0.2	0	C|1.000;T|0.000	0.000	strong	.	SLC9A3	89	.	NM_004174	exon10	c.G1569A	p.S523S	CTGGGCCGACCGT	.	PASS	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	37	1	66036295	66036295	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	118	3	172	0	0.0254237	0	.	.	none	LEPR_ENST00000349533,NS,carcinoma,0,6	LEPR	284	6	NM_002303	exon4	c.G180T	p.S60S	AAATTCGAATGGA	.	scavenged	Atlas-SNP
CSK	1445	hgsc.bcm.edu	37	15	75093927	75093927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CW-01A-11D-A382-10	TCGA-FF-A7CW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	422d5ebf-9d30-4c11-b1fe-c437822f0143	22d154b9-2ceb-409b-94d1-8f44d359d3a3	69	8	71	0	0.115942	0	.	.	none	.	CSK	43	.	NM_001127190	exon11	c.A878G	p.K293R	TCCTCAAGTTCTC	.	PASS	Atlas-SNP
