Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1271219	1271221	+	In_Frame_Del	DEL	CCA	CCA	-	rs199629887	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CCA	CCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	254	66	223	.	0.260	.	CCA|0.926;-|0.074	0.074	strong	.	MUC5B	473	.	NM_002458	exon31	c.13108_13110del	p.4370_4370del	.	.	PASS	Pindel,Atlas-Indel
ADM2	79924	hgsc.bcm.edu	37	22	50921149	50921166	+	In_Frame_Del	DEL	ACACTCGGGCCCCCGAAG	ACACTCGGGCCCCCGAAG	-	rs72438078	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	ACACTCGGGCCCCCGAAG	ACACTCGGGCCCCCGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	24	81	.	0.375	.	ACACTCGGGCCCCCGAAG|0.874;-|0.126	0.126	strong	.	ADM2	15	.	NM_001253845	exon3	c.263_280del	p.88_94del	.	.	PASS	Pindel,Atlas-Indel
TTLL9	164395	hgsc.bcm.edu	37	20	30510797	30510798	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	34	80	.	0.337	.	.	.	none	.	TTLL9	95	.	NM_001008409	exon8	c.604_605del	p.202_202del	.	.	PASS	Pindel,Atlas-Indel
AAK1	22848	hgsc.bcm.edu	37	2	69741754	69741756	+	In_Frame_Del	DEL	TGT	TGT	-	rs3832159	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	48	84	.	0.511	.	TGT|0.607;-|0.393	0.393	strong	.	AAK1	121	.	NM_014911	exon13	c.1624_1626del	p.542_542del	.	.	PASS	Pindel,Atlas-Indel
OR8J1	219477	hgsc.bcm.edu	37	11	56128673	56128674	+	Frame_Shift_Ins	INS	-	-	T	rs34649252	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	16	45	.	0.364	.	-|0.931;T|0.069	0.069	strong	.	OR8J1	87	.	NM_001005205	exon1	c.951_952insT	p.X317delinsX	.	.	PASS	Pindel,Atlas-Indel
ATXN1	6310	hgsc.bcm.edu	37	6	16327907	16327909	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	14	58	0	0.225806	0	.	.	none	ATXN1,colon,carcinoma,0,3	ATXN1	117	3	NM_001128164	exon7	c.634_636del	p.212_212del	.	.	PASS	Atlas-Indel
DHDH	27294	hgsc.bcm.edu	37	19	49447749	49447750	+	Frame_Shift_Del	DEL	GA	GA	-	rs3835153	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	54	146	.	0.325	.	GA|0.941;-|0.059	0.059	strong	.	DHDH	35	.	NM_014475	exon6	c.879_880del	p.293_294del	.	.	PASS	Pindel,Atlas-Indel
ZNF701	55762	hgsc.bcm.edu	37	19	53086620	53086624	+	Frame_Shift_Del	DEL	ACCTT	ACCTT	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	ACCTT	ACCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	36	154	.	0.231	.	.	.	none	.	ZNF701	44	.	NM_001172655	exon5	c.1505_1509del	p.502_503del	.	.	PASS	Pindel,Atlas-Indel
HGC6.3	0	hgsc.bcm.edu	37	6	168376882	168376883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	34	255	0	0.175258	0	.	.	none	.	.	.	.	NM_001129895	exon1	c.451_452insA	p.Q151fs	.	.	PASS	Atlas-Indel
VEZF1	7716	hgsc.bcm.edu	37	17	56056586	56056587	+	In_Frame_Ins	INS	-	-	TGT	rs199628152	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	88	202	0	0.384279	0	-|0.946;TGT|0.054	0.054	strong	.	VEZF1	50	.	NM_007146	exon5	c.1065_1066insACA	p.H355delinsQH	.	.	PASS	Atlas-Indel
COBL	23242	hgsc.bcm.edu	37	7	51098568	51098570	+	In_Frame_Del	DEL	TCT	TCT	-	rs142060269	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	49	142	.	0.316	.	TCT|0.609;-|0.391	0.391	strong	.	COBL	167	.	NM_015198	exon9	c.1444_1446del	p.482_482del	.	.	PASS	Pindel,Atlas-Indel
ACOT4	122970	hgsc.bcm.edu	37	14	74060511	74060512	+	Frame_Shift_Ins	INS	-	-	TCAA	rs373880503	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	13	116	0	0.216667	0	.	.	weak	.	ACOT4	25	.	NM_152331	exon2	c.563_564insTCAA	p.L188fs	.	.	PASS	Atlas-Indel
GTF3C3	9330	hgsc.bcm.edu	37	2	197657762	197657767	+	In_Frame_Del	DEL	TCCTCC	TCCTCC	-	rs372304935	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCCTCC	TCCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	276	66	314	.	0.239	.	.	.	alt	.	GTF3C3	96	.	NM_012086	exon3	c.325_330del	p.109_110del	.	.	PASS	Pindel,Atlas-Indel
MYH7B	57644	hgsc.bcm.edu	37	20	33588699	33588720	+	Splice_Site	DEL	GAGGCTGGGCAAGGGCTGTGGG	GAGGCTGGGCAAGGGCTGTGGG	-	rs67885143	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAGGCTGGGCAAGGGCTGTGGG	GAGGCTGGGCAAGGGCTGTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	29	84	.	0.367	.	GAGGCTGGGCAAGGGCTGTGGG|0.835;-|0.165	0.165	strong	.	MYH7B	145	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
FAM171B	165215	hgsc.bcm.edu	37	2	187559047	187559048	+	In_Frame_Ins	INS	-	-	CAA	rs144403657	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	10	47	.	0.161	.	-|0.371;CAA|0.629	0.629	strong	FAM171B,NS,carcinoma,0,1	FAM171B	146	1	NM_177454	exon1	c.147_148insCAA	p.Q49delinsQQ	.	.	PASS	Pindel,Atlas-Indel
GRP	2922	hgsc.bcm.edu	37	18	56897668	56897671	+	Frame_Shift_Del	DEL	GAAG	GAAG	-	rs149962068	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAAG	GAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	10	37	0	0.322581	0	.	.	strong	.	GRP	17	.	NM_002091	exon3	c.414_417del	p.138_139del	.	.	PASS	Atlas-Indel
WT1-AS	51352	hgsc.bcm.edu	37	11	32461025	32461026	+	RNA	INS	-	-	AG	rs144116821	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	12	48	.	0.240	.	.	.	strong	.	WT1-AS	7	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254335	39254336	+	Frame_Shift_Ins	INS	-	-	T	rs201764113	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	64	230	.	0.260	.	-|0.420;T|0.580	0.580	strong	.	KRTAP4-8	57	.	NM_031960	exon1	c.2_3insA	p.M1fs	.	.	PASS	Pindel,Atlas-Indel
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324346	39324347	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	18	203	0	0.0918367	0	.	.	none	KRTAP4-3,NS,carcinoma,+2,1	KRTAP4-3	40	1	NM_033187	exon1	c.79_80insAAA	p.P27delinsKP	.	.	PASS	Atlas-Indel
OR51B5	282763	hgsc.bcm.edu	37	11	5364542	5364558	+	Frame_Shift_Del	DEL	CAGCCCCAGGTCTGTGG	CAGCCCCAGGTCTGTGG	-	rs147062602	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CAGCCCCAGGTCTGTGG	CAGCCCCAGGTCTGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	23	58	.	0.311	.	.	.	strong	.	OR51B5	60	.	NM_001005567	exon5	c.198_214del	p.66_72del	.	.	PASS	Pindel,Atlas-Indel
HLA-B	3106	hgsc.bcm.edu	37	6	31324604	31324604	+	Frame_Shift_Del	DEL	T	T	-	rs200186034	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	19	96	0	0.95	0	T|0.467;-|0.533	0.533	strong	.	HLA-B	54	.	NM_005514	exon2	c.205delG	p.E69fs	.	.	PASS	Atlas-Indel
SLC41A3	54946	hgsc.bcm.edu	37	3	125725269	125725272	+	Frame_Shift_Del	DEL	AACA	AACA	-	rs111477552	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AACA	AACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	66	106	.	0.611	.	AACA|0.841;-|0.159	0.159	strong	.	SLC41A3	80	.	NM_001008485	exon12	c.1503_1506del	p.501_502del	.	.	PASS	Pindel,Atlas-Indel
CTAGE5	4253	hgsc.bcm.edu	37	14	39784005	39784006	+	Splice_Site	DEL	TA	TA	-	rs75318507	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	92	142	0	0.575	0	.	.	strong	.	CTAGE5	75	.	.	.	.	.	.	.	PASS	Atlas-Indel
CLDN16	10686	hgsc.bcm.edu	37	3	190106072	190106072	+	Frame_Shift_Del	DEL	G	G	-	rs56086318	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	209	205	0	0.972093	0	.	.	strong	.	CLDN16	59	.	NM_006580	exon1	c.163delA	p.R55fs	.	.	PASS	Atlas-Indel
LENG9	94059	hgsc.bcm.edu	37	19	54973989	54973991	+	In_Frame_Del	DEL	CCT	CCT	-	rs140013148	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	26	102	.	0.299	.	CCT|0.607;-|0.393	0.393	strong	.	LENG9	46	.	NM_198988	exon1	c.786_788del	p.262_263del	.	.	PASS	Pindel,Atlas-Indel
AKR7L	246181	hgsc.bcm.edu	37	1	19597275	19597275	+	RNA	DEL	C	C	-	rs140586925	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	73	269	.	0.251	.	C|0.973;-|0.027	0.027	strong	.	AKR7L	11	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
CCDC9	26093	hgsc.bcm.edu	37	19	47774666	47774668	+	In_Frame_Del	DEL	GAG	GAG	-	rs138370983	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	17	57	.	0.362	.	GAG|0.916;-|0.084	0.084	strong	.	CCDC9	37	.	NM_015603	exon12	c.1326_1328del	p.442_443del	.	.	PASS	Pindel,Atlas-Indel
POLI	11201	hgsc.bcm.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	CGA	-	rs10584411	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CGA	CGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	37	84	.	0.597	.	CGA|0.254;-|0.746	0.746	strong	.	POLI	132	.	NM_007195	exon1	c.41_43del	p.14_15del	.	.	PASS	Pindel,Atlas-Indel
TNP2	7142	hgsc.bcm.edu	37	16	11362797	11362797	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	266	47	232	.	0.177	.	.	.	none	.	TNP2	15	.	NM_005425	exon1	c.324delC	p.N108fs	.	.	PASS	Pindel,Atlas-Indel
EFCAB6	64800	hgsc.bcm.edu	37	22	43933285	43933286	+	Frame_Shift_Del	DEL	CT	CT	-	rs3833393	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	40	115	.	0.336	.	CT|0.993;-|0.007	0.007	strong	.	EFCAB6	177	.	NM_022785	exon29	c.4020_4021del	p.1340_1341del	.	.	PASS	Pindel,Atlas-Indel
SCN3A	6328	hgsc.bcm.edu	37	2	166032776	166032778	+	In_Frame_Del	DEL	ATT	ATT	-	rs72471101	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	78	292	.	0.317	.	ATT|0.949;-|0.051	0.051	strong	.	SCN3A	544	.	NM_001081677	exon3	c.128_130del	p.43_44del	.	.	PASS	Pindel,Atlas-Indel
EXO5	64789	hgsc.bcm.edu	37	1	40981245	40981246	+	Frame_Shift_Ins	INS	-	-	G	rs150018949	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	29	114	.	0.326	.	-|0.989;G|0.011	0.011	strong	.	.	.	.	NM_022774	exon3	c.1029_1030insG	p.C343fs	.	.	PASS	Pindel,Atlas-Indel
SCN9A	6335	hgsc.bcm.edu	37	2	167138320	167138321	+	Splice_Site	INS	-	-	A	rs35888674	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	13	41	.	0.277	.	A|1.000;|0.000	1.000	weak	.	SCN9A	296	.	NM_002977	exon14	c.1942-2->T	.	.	.	PASS	Pindel,Atlas-Indel
DENND4B	9909	hgsc.bcm.edu	37	1	153907279	153907287	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	rs3835302	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTGCTGCTG	CTGCTGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	17	86	.	0.239	.	.	.	strong	.	DENND4B	210	.	NM_014856	exon18	c.2723_2731del	p.908_911del	.	.	PASS	Pindel,Atlas-Indel
SMARCA2	6595	hgsc.bcm.edu	37	9	2039777	2039779	+	In_Frame_Del	DEL	CAG	CAG	-	rs376509101		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	20	59	0	0.21978	0	.	.	weak	SMARCA2_ENST00000349721,NS,carcinoma,0,2	SMARCA2	313	2	NM_139045	exon4	c.666_668del	p.222_223del	.	.	PASS	Atlas-Indel
ITPKB	3707	hgsc.bcm.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	CTGCCGCTG	-	rs147889095	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTGCCGCTG	CTGCCGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	14	14	0	0.823529	0	CTGCCGCTG|0.711;-|0.289	0.289	strong	.	ITPKB	158	.	NM_002221	exon2	c.277_285del	p.93_95del	.	.	PASS	Atlas-Indel
DLGAP2	9228	hgsc.bcm.edu	37	8	1626460	1626461	+	In_Frame_Ins	INS	-	-	CAC	rs200151488	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	29	90	.	0.322	.	-|0.982;CAC|0.018	0.018	strong	.	DLGAP2	292	.	NM_004745	exon9	c.2129_2130insCAC	p.I710delinsIT	.	.	PASS	Pindel,Atlas-Indel
PDE4DIP	9659	hgsc.bcm.edu	37	1	144923729	144923729	+	Frame_Shift_Del	DEL	T	T	-	rs3215779	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	398	89	352	0	0.223618	0	.	.	weak	.	PDE4DIP	817	.	NM_001002811	exon2	c.1219delC	p.L407fs	.	.	PASS	Atlas-Indel
AGAP1	116987	hgsc.bcm.edu	37	2	236761414	236761415	+	Frame_Shift_Ins	INS	-	-	CAGG	rs142341634	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	364	78	343	.	0.214	.	-|0.857;CAGG|0.143	0.143	strong	.	AGAP1	95	.	NM_001244888	exon10	c.1135_1136insCAGG	p.P379fs	.	.	PASS	Pindel,Atlas-Indel
EMCN	51705	hgsc.bcm.edu	37	4	101401162	101401164	+	In_Frame_Del	DEL	AAC	AAC	-	rs80331904	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	53	177	.	0.306	.	AAC|0.680;-|0.320	0.320	strong	.	EMCN	37	.	NM_016242	exon2	c.98_100del	p.33_34del	.	.	PASS	Pindel,Atlas-Indel
SLC5A10	125206	hgsc.bcm.edu	37	17	18918510	18918511	+	In_Frame_Ins	INS	-	-	CGGTACGGGGGTGGGGGC	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	18	47	0	0.295082	0	.	.	none	SLC5A10,right_lower_lobe,carcinoma,+1,1	SLC5A10	55	1	NM_152351	exon11	c.1287_1288insCGGTACGGGGGTGGGGGC	p.G429delinsGRYGGGG	.	.	PASS	Atlas-Indel
DHDH	27294	hgsc.bcm.edu	37	19	49442849	49442850	+	Frame_Shift_Ins	INS	-	-	G	rs3830420	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	36	60	.	0.590	.	-|0.754;G|0.246	0.246	strong	.	DHDH	35	.	NM_014475	exon4	c.510_511insG	p.A170fs	.	.	PASS	Pindel,Atlas-Indel
PIK3C2G	5288	hgsc.bcm.edu	37	12	18435399	18435401	+	In_Frame_Del	DEL	CCC	CCC	-	rs35277916	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	29	77	.	0.330	.	CCC|0.695;-|0.305	0.305	strong	.	PIK3C2G	315	.	NM_004570	exon2	c.383_385del	p.128_129del	.	.	PASS	Pindel,Atlas-Indel
SAAL1	113174	hgsc.bcm.edu	37	11	18127558	18127559	+	In_Frame_Ins	INS	-	-	CGG	rs148650821	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	13	10	21	0	0.769231	0	.	.	strong	.	SAAL1	34	.	NM_138421	exon1	c.31_32insCCG	p.G11delinsPG	.	.	PASS	Atlas-Indel
C19orf33	64073	hgsc.bcm.edu	37	19	38795547	38795549	+	In_Frame_Del	DEL	GAA	GAA	-	rs139805446	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	274	63	237	.	0.230	.	GAA|0.847;-|0.153	0.153	strong	.	C19orf33	9	.	NM_033520	exon4	c.263_265del	p.88_89del	.	.	PASS	Pindel,Atlas-Indel
POLD3	10714	hgsc.bcm.edu	37	11	74336609	74336609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	11	69	0	0.115789	0	.	.	none	POLD3_ENST00000263681,NS,carcinoma,-1,4	POLD3	87	4	NM_006591	exon8	c.889delG	p.E297fs	.	.	PASS	Atlas-Indel
TRIM52	84851	hgsc.bcm.edu	37	5	180687429	180687431	+	In_Frame_Del	DEL	TCT	TCT	-	rs33972170	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	37	126	.	0.301	.	TCT|0.580;-|0.420	0.420	strong	.	TRIM52	20	.	NM_032765	exon1	c.385_387del	p.129_129del	.	.	PASS	Pindel,Atlas-Indel
ITGA7	3679	hgsc.bcm.edu	37	12	56091333	56091333	+	Splice_Site	DEL	G	G	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	26	63	.	0.382	.	.	.	none	.	ITGA7	194	.	NM_001144996	exon11	c.1422-2C>-	.	.	.	PASS	Pindel,Atlas-Indel
RYR3	6263	hgsc.bcm.edu	37	15	34137080	34137082	+	In_Frame_Del	DEL	AGA	AGA	-	rs3217346	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	36	107	.	0.400	.	AGA|0.918;-|0.082	0.082	strong	.	RYR3	760	.	NM_001036	exon93	c.13313_13315del	p.4438_4439del	.	.	PASS	Pindel,Atlas-Indel
KANK3	256949	hgsc.bcm.edu	37	19	8389893	8389895	+	In_Frame_Del	DEL	TCC	TCC	-	rs111905975	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	26	81	.	0.302	.	TCC|0.852;-|0.148	0.148	strong	.	KANK3	35	.	NM_198471	exon8	c.2023_2025del	p.675_675del	.	.	PASS	Pindel,Atlas-Indel
BDNF	627	hgsc.bcm.edu	37	11	27681176	27681177	+	RNA	INS	-	-	TG	rs149254890	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	70	189	0	0.409357	0	.	.	strong	.	BDNF	63	.	.	.	.	.	.	.	PASS	Atlas-Indel
NUP155	9631	hgsc.bcm.edu	37	5	37309372	37309374	+	Splice_Site	DEL	AGA	AGA	-	rs3835198	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	18	41	.	0.419	.	AGA|0.730;-|0.270	0.270	strong	.	NUP155	116	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
TRDN	10345	hgsc.bcm.edu	37	6	123594510	123594511	+	Splice_Site	INS	-	-	A	rs147062785	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	14	62	.	0.269	.	-|0.740;A|0.260	0.260	strong	.	TRDN	88	.	NM_006073	exon29	c.1598-2->T	.	.	.	PASS	Pindel,Atlas-Indel
SGK223	0	hgsc.bcm.edu	37	8	8234868	8234869	+	In_Frame_Ins	INS	-	-	GCCGCT	rs150979349	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	41	104	.	0.471	.	.	.	strong	.	.	.	.	NM_001080826	exon2	c.1051_1052insAGCGGC	p.A351delinsSGA	.	.	PASS	Pindel,Atlas-Indel
PRKCSH	5589	hgsc.bcm.edu	37	19	11558340	11558341	+	In_Frame_Ins	INS	-	-	GAG	rs3217229	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	24	128	.	0.167	.	-|0.500;GAG|0.500	0.500	strong	.	PRKCSH	55	.	NM_001001329	exon11	c.936_937insGAG	p.T312delinsTE	.	.	PASS	Pindel,Atlas-Indel
THAP2	83591	hgsc.bcm.edu	37	12	72070506	72070508	+	In_Frame_Del	DEL	GTT	GTT	-	rs140783391	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	34	94	.	0.321	.	GTT|0.969;-|0.031	0.031	strong	.	THAP2	29	.	NM_031435	exon3	c.304_306del	p.102_102del	.	.	PASS	Pindel,Atlas-Indel
ZNF772	400720	hgsc.bcm.edu	37	19	57988666	57988667	+	In_Frame_Ins	INS	-	-	GCC	rs34678661	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	109	199	.	0.456	.	GCC|1.000;|0.000	1.000	strong	ZNF772,colon,carcinoma,0,1	ZNF772	42	1	NM_001024596	exon1	c.12_13insGGC	p.A4delinsAA	.	.	PASS	Pindel,Atlas-Indel
PDE4DIP	9659	hgsc.bcm.edu	37	1	144915624	144915624	+	Frame_Shift_Del	DEL	G	G	-	rs66512216	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	33	147	.	0.185	.	G|0.808;-|0.192	0.192	strong	.	PDE4DIP	817	.	NM_001002811	exon10	c.2291delT	p.L764fs	.	.	PASS	Pindel,Atlas-Indel
ACOT4	122970	hgsc.bcm.edu	37	14	74060514	74060517	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	rs375801976		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTTA	CTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	14	118	0	0.25	0	.	.	weak	.	ACOT4	25	.	NM_152331	exon2	c.565_568del	p.189_190del	.	.	PASS	Atlas-Indel
REXO1	57455	hgsc.bcm.edu	37	19	1825928	1825930	+	In_Frame_Del	DEL	CTC	CTC	-	rs149465929	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	44	168	.	0.272	.	CTC|0.704;-|0.296	0.296	strong	.	REXO1	55	.	NM_020695	exon3	c.1925_1927del	p.642_643del	.	.	PASS	Pindel,Atlas-Indel
TBP	6908	hgsc.bcm.edu	37	6	170871038	170871040	+	In_Frame_Del	DEL	CAA	CAA	-	rs71815788	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	60	65	0	0.789474	0	.	.	strong	TBP,caecum,carcinoma,0,1	TBP	58	1	NM_003194	exon3	c.213_215del	p.71_72del	.	.	PASS	Atlas-Indel
SHROOM4	57477	hgsc.bcm.edu	37	X	50350728	50350729	+	In_Frame_Ins	INS	-	-	TCC	rs143151534	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	24	45	0	0.470588	0	-|0.700;TCC|0.300	0.300	strong	.	SHROOM4	171	.	NM_020717	exon6	c.3414_3415insGGA	p.E1138delinsEE	.	.	PASS	Atlas-Indel
ACIN1	22985	hgsc.bcm.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	10	151	0	0.060241	0	.	.	none	.	ACIN1	147	.	NM_014977	exon19	c.3881_3882del	p.1294_1294del	.	.	PASS	Atlas-Indel
RIMBP3	85376	hgsc.bcm.edu	37	22	20457872	20457873	+	Frame_Shift_Ins	INS	-	-	A	rs201588919	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1699	343	1680	0	0.201883	0	-|0.994;A|0.006	0.006	strong	.	RIMBP3	42	.	NM_015672	exon1	c.3430_3431insT	p.G1144fs	.	.	PASS	Atlas-Indel
OR51F1	256892	hgsc.bcm.edu	37	11	4790874	4790874	+	Frame_Shift_Del	DEL	G	G	-	rs34672924	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	27	87	.	0.260	.	G|0.772;-|0.228	0.228	strong	OR51F1,NS,carcinoma,-1,1	OR51F1	60	1	NM_001004752	exon1	c.275delG	p.R92fs	.	.	PASS	Pindel,Atlas-Indel
TTBK1	84630	hgsc.bcm.edu	37	6	43250726	43250728	+	In_Frame_Del	DEL	GAA	GAA	-	rs113160341	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	12	59	.	0.176	.	GAA|0.806;-|0.194	0.194	strong	TTBK1,NS,carcinoma,0,1	TTBK1	124	1	NM_032538	exon14	c.2247_2249del	p.749_750del	.	.	PASS	Pindel,Atlas-Indel
C11orf40	143501	hgsc.bcm.edu	37	11	4592708	4592709	+	Frame_Shift_Ins	INS	-	-	AG	rs71280817	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	55	152	0	0.357143	0	-|0.378;AC|0.622	.	strong	.	C11orf40	37	.	NM_144663	exon4	c.599_600insCT	p.C200fs	.	.	PASS	Atlas-Indel
CYP3A43	64816	hgsc.bcm.edu	37	7	99434078	99434078	+	Frame_Shift_Del	DEL	A	A	-	rs61469810	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	49	84	.	0.533	.	A|0.903;-|0.097	0.097	strong	.	CYP3A43	52	.	NM_057095	exon2	c.73delT	p.Y25fs	.	.	PASS	Pindel,Atlas-Indel
TMPRSS6	164656	hgsc.bcm.edu	37	22	37465386	37465390	+	Splice_Site	DEL	TGGGG	TGGGG	-	rs200434923	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGGGG	TGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	17	84	.	0.254	.	TGGGG|0.528;-|0.472	0.472	strong	.	TMPRSS6	99	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
NEIL3	55247	hgsc.bcm.edu	37	4	178256864	178256864	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	53	157	.	0.298	.	.	.	none	.	NEIL3	89	.	NM_018248	exon3	c.300delC	p.G100fs	.	.	PASS	Pindel,Atlas-Indel
HGC6.3	0	hgsc.bcm.edu	37	6	168376880	168376881	+	Frame_Shift_Ins	INS	-	-	G	rs368066294	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	38	252	0	0.196891	0	.	.	alt	.	.	.	.	NM_001129895	exon1	c.453_454insC	p.Q151fs	.	.	PASS	Atlas-Indel
KRTAP29-1	100533177	hgsc.bcm.edu	37	17	39458574	39458586	+	Frame_Shift_Del	DEL	GTACAGATGGTTG	GTACAGATGGTTG	-	rs144150438	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GTACAGATGGTTG	GTACAGATGGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	23	54	.	0.404	.	.	.	strong	.	KRTAP29-1	2	.	NM_001257309	exon1	c.519_531del	p.173_177del	.	.	PASS	Pindel,Atlas-Indel
TPRX1	284355	hgsc.bcm.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GGGCCTGGGATC	GGGCCTGGGATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	18	44	0	0.367347	0	.	.	none	TPRX1,NS,carcinoma,0,1	TPRX1	46	1	NM_198479	exon2	c.619_630del	p.207_210del	.	.	PASS	Atlas-Indel
ZSCAN18	65982	hgsc.bcm.edu	37	19	58598358	58598369	+	In_Frame_Del	DEL	TGGAAAGGACTT	TGGAAAGGACTT	-	rs368736992		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGGAAAGGACTT	TGGAAAGGACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	11	77	.	0.250	.	.	.	weak	.	ZSCAN18	104	.	NM_001145542	exon5	c.818_829del	p.273_277del	.	.	PASS	Pindel,Atlas-Indel
KTI12	112970	hgsc.bcm.edu	37	1	52499071	52499097	+	In_Frame_Del	DEL	GCCCGCCACCTGAGGTCCCGCGATCGG	GCCCGCCACCTGAGGTCCCGCGATCGG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GCCCGCCACCTGAGGTCCCGCGATCGG	GCCCGCCACCTGAGGTCCCGCGATCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	15	18	.	0.652	.	.	.	none	.	KTI12	30	.	NM_138417	exon1	c.338_364del	p.113_122del	.	.	PASS	Pindel,Atlas-Indel
C16orf96	342346	hgsc.bcm.edu	37	16	4644390	4644392	+	In_Frame_Del	DEL	AGG	AGG	-	rs139232890	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	36	103	.	0.321	.	AGG|0.931;-|0.069	0.069	strong	.	C16orf96	28	.	NM_001145011	exon13	c.2905_2907del	p.969_969del	.	.	PASS	Pindel,Atlas-Indel
MN1	4330	hgsc.bcm.edu	37	22	28194962	28194963	+	In_Frame_Ins	INS	-	-	CTGCTG	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	10	76	0	0.123457	0	.	.	none	MN1,NS,carcinoma,+2,1	MN1	122	1	NM_002430	exon1	c.1570_1571insCAGCAG	p.Q524delinsQQQ	.	.	PASS	Atlas-Indel
AKD1	221264	hgsc.bcm.edu	37	6	109906330	109906332	+	In_Frame_Del	DEL	CTT	CTT	-	rs71770197	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	11	61	.	0.193	.	CTT|0.626;-|0.374	0.374	strong	.	AKD1	223	.	NM_001145128	exon19	c.2109_2111del	p.703_704del	.	.	PASS	Pindel,Atlas-Indel
IFNE	338376	hgsc.bcm.edu	37	9	21482239	21482241	+	RNA	DEL	AAT	AAT	-	rs34533918	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	14	59	.	0.359	.	AAT|0.882;-|0.118	0.118	strong	.	IFNE	16	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
ALLC	55821	hgsc.bcm.edu	37	2	3749152	3749154	+	In_Frame_Del	DEL	GAA	GAA	-	rs66473381	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	41	81	.	0.631	.	GAA|0.578;-|0.422	0.422	strong	.	ALLC	61	.	NM_018436	exon11	c.900_902del	p.300_301del	.	.	PASS	Pindel,Atlas-Indel
PRDM2	7799	hgsc.bcm.edu	37	1	14106394	14106395	+	In_Frame_Ins	INS	-	-	CTC	rs2308040	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	38	97	.	0.355	.	-|0.492;CTC|0.508	0.508	strong	.	PRDM2	147	.	NM_015866	exon8	c.2104_2105insCTC	p.T702delinsTP	.	.	PASS	Pindel,Atlas-Indel
EFCAB13	124989	hgsc.bcm.edu	37	17	45438887	45438890	+	Frame_Shift_Del	DEL	AGTG	AGTG	-	rs10538163	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGTG	AGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	33	104	.	0.324	.	AGTG|0.561;-|0.439	0.439	strong	.	.	.	.	NM_152347	exon10	c.804_805del	p.268_269del	.	.	PASS	Pindel,Atlas-Indel
LFNG	3955	hgsc.bcm.edu	37	7	2552881	2552882	+	Frame_Shift_Ins	INS	-	-	GATG	rs34637446	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	25	79	.	0.225	.	.	.	strong	LFNG_ENST00000402506,caecum,carcinoma,0,2	LFNG	57	2	NM_001166355	exon2	c.138_139insGATG	p.T46fs	.	.	PASS	Pindel,Atlas-Indel
PCDHB2	56133	hgsc.bcm.edu	37	5	140475633	140475634	+	In_Frame_Ins	INS	-	-	CATCAC	rs372005802		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	48	195	.	0.210	.	.	.	weak	.	PCDHB2	163	.	NM_018936	exon1	c.1259_1260insCATCAC	p.N420delinsNIT	.	.	PASS	Pindel,Atlas-Indel
KRTAP4-4	84616	hgsc.bcm.edu	37	17	39316851	39316865	+	In_Frame_Del	DEL	GCAGCAGGTGGTCTG	GCAGCAGGTGGTCTG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GCAGCAGGTGGTCTG	GCAGCAGGTGGTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	24	120	.	0.185	.	.	.	none	.	KRTAP4-4	21	.	NM_032524	exon1	c.80_94del	p.27_32del	.	.	PASS	Pindel,Atlas-Indel
IRF5	3663	hgsc.bcm.edu	37	7	128587352	128587381	+	In_Frame_Del	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	39	63	.	0.398	.	.	.	none	.	IRF5	40	.	NM_001098629	exon6	c.549_578del	p.183_193del	.	.	PASS	Pindel,Atlas-Indel
OR2T4	127074	hgsc.bcm.edu	37	1	248525639	248525639	+	Frame_Shift_Del	DEL	A	A	-	rs34079073	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	801	157	755	.	0.196	.	A|0.602;-|0.398	0.398	strong	.	OR2T4	126	.	NM_001004696	exon1	c.756delC	p.L252fs	.	.	PASS	Pindel,Atlas-Indel
SH3BGR	6450	hgsc.bcm.edu	37	21	40883671	40883672	+	In_Frame_Ins	INS	-	-	AGA	rs3831201	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	57	83	.	0.671	.	.	.	strong	SH3BGR,colon,carcinoma,0,1	SH3BGR	29	1	NM_007341	exon6	c.689_690insAGA	p.G230delinsGE	.	.	PASS	Pindel,Atlas-Indel
UGDH	7358	hgsc.bcm.edu	37	4	39515807	39515813	+	Splice_Site	DEL	AAAAAGA	AAAAAGA	-	rs151116497	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AAAAAGA	AAAAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	26	105	.	0.232	.	.	.	strong	.	UGDH	52	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
SHKBP1	92799	hgsc.bcm.edu	37	19	41095087	41095112	+	Splice_Site	DEL	GAGGACAGTCCTGTCCAACAGGGAGG	GAGGACAGTCCTGTCCAACAGGGAGG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAGGACAGTCCTGTCCAACAGGGAGG	GAGGACAGTCCTGTCCAACAGGGAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	12	73	.	0.174	.	.	.	none	.	SHKBP1	68	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
HGC6.3	0	hgsc.bcm.edu	37	6	168376925	168376926	+	Frame_Shift_Ins	INS	-	-	T	rs35001101	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	42	276	0	0.185841	0	.	.	strong	.	.	.	.	NM_001129895	exon1	c.408_409insA	p.P136fs	.	.	PASS	Atlas-Indel
IST1	9798	hgsc.bcm.edu	37	16	71956512	71956517	+	In_Frame_Del	DEL	ATGCCC	ATGCCC	-	rs148848854	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	ATGCCC	ATGCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	19	115	.	0.198	.	.	.	strong	.	.	.	.	NM_001270976	exon8	c.726_731del	p.242_244del	.	.	PASS	Pindel,Atlas-Indel
MIR205HG	642587	hgsc.bcm.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	rs3842530	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGCAGCAGCAGC	AGCAGCAGCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	24	51	.	0.393	.	.	.	strong	.	.	.	.	NM_001104548	exon4	c.251_262del	p.84_88del	.	.	PASS	Pindel,Atlas-Indel
C5orf60	285679	hgsc.bcm.edu	37	5	179071810	179071812	+	In_Frame_Del	DEL	TCC	TCC	-	rs151013485	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	31	88	.	0.221	.	TCC|0.934;-|0.066	0.066	strong	.	C5orf60	24	.	NM_001142306	exon1	c.211_213del	p.71_71del	.	.	PASS	Pindel,Atlas-Indel
LOR	4014	hgsc.bcm.edu	37	1	153233488	153233489	+	In_Frame_Ins	INS	-	-	GGCGGT	rs150026164	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	11	69	.	0.216	.	-|0.771;GGCGGT|0.229	0.229	strong	.	LOR	19	.	NM_000427	exon2	c.63_64insGGCGGT	p.G21delinsGGG	.	.	PASS	Pindel,Atlas-Indel
HLA-G	3135	hgsc.bcm.edu	37	6	29796435	29796435	+	Frame_Shift_Del	DEL	C	C	-	rs41557518	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	74	177	.	0.327	.	C|0.967;-|0.033	0.033	strong	.	HLA-G	90	.	NM_002127	exon4	c.458delA	p.D153fs	.	.	PASS	Pindel,Atlas-Indel
TPM2	7169	hgsc.bcm.edu	37	9	35683240	35683241	+	Splice_Site	INS	-	-	G	rs149115565	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	60	184	.	0.278	.	.	.	strong	.	TPM2	64	.	NM_003289	exon10	c.773-2->C	.	.	.	PASS	Pindel,Atlas-Indel
BBX	56987	hgsc.bcm.edu	37	3	107491759	107491761	+	In_Frame_Del	DEL	AGA	AGA	-	rs34531902	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	47	123	.	0.329	.	AGA|0.951;-|0.049	0.049	strong	.	BBX	156	.	NM_001142568	exon11	c.1190_1192del	p.397_398del	.	.	PASS	Pindel,Atlas-Indel
NEDD8-MDP1	100528064	hgsc.bcm.edu	37	14	24683267	24683267	+	Frame_Shift_Del	DEL	A	A	-	rs3215610	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	64	107	.	0.582	.	A|0.812;-|0.188	0.188	strong	.	.	.	.	NM_001199823	exon7	c.546delG	p.L182fs	.	.	PASS	Pindel,Atlas-Indel
ATN1	1822	hgsc.bcm.edu	37	12	7045891	7045892	+	In_Frame_Ins	INS	-	-	CAG	rs377147612	bycluster;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	23	99	0	0.181102	0	.	.	alt	ATN1,NS,carcinoma,0,3	ATN1	95	3	NM_001007026	exon5	c.1461_1462insCAG	p.Q487delinsQQ	.	.	PASS	Atlas-Indel
RTL1	388015	hgsc.bcm.edu	37	14	101350670	101350671	+	In_Frame_Ins	INS	-	-	TCT	rs35401447	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	101	201	.	0.523	.	.	.	strong	.	RTL1	120	.	NM_001134888	exon1	c.456_457insAGA	p.E152delinsEE	.	.	PASS	Pindel,Atlas-Indel
KRT1	3848	hgsc.bcm.edu	37	12	53069223	53069243	+	In_Frame_Del	DEL	ACCTCCGGAGCCGTAGCTGCT	ACCTCCGGAGCCGTAGCTGCT	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	ACCTCCGGAGCCGTAGCTGCT	ACCTCCGGAGCCGTAGCTGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	14	14	14	0	1	0	.	.	none	.	KRT1	110	.	NM_006121	exon9	c.1670_1690del	p.557_564del	.	.	PASS	Atlas-Indel
MYO5B	4645	hgsc.bcm.edu	37	18	47405425	47405426	+	In_Frame_Ins	INS	-	-	GAG	rs3841750	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	56	134	.	0.289	.	-|0.623;GAG|0.377	0.377	strong	MYO5B,NS,carcinoma,0,1	MYO5B	178	1	NM_001080467	exon24	c.3166_3167insCTC	p.M1056delinsLM	.	.	PASS	Pindel,Atlas-Indel
KREMEN2	79412	hgsc.bcm.edu	37	16	3017836	3017836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	41	136	.	0.315	.	.	.	none	.	KREMEN2	13	.	NM_172229	exon9	c.1203delA	p.K401fs	.	.	PASS	Pindel,Atlas-Indel
TNRC6A	27327	hgsc.bcm.edu	37	16	24788423	24788434	+	In_Frame_Del	DEL	GCAGCCACAGCC	GCAGCCACAGCC	-	rs71383714	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GCAGCCACAGCC	GCAGCCACAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	18	35	0	0.418605	0	GCAGCCACAGCC|0.906;-|0.094	0.094	strong	.	TNRC6A	171	.	NM_014494	exon5	c.332_343del	p.111_115del	.	.	PASS	Atlas-Indel
CPLX3	594855	hgsc.bcm.edu	37	15	75122558	75122560	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	48	198	.	0.284	.	.	.	none	.	CPLX3	12	.	NM_001030005	exon3	c.339_341del	p.113_114del	.	.	PASS	Pindel,Atlas-Indel
HOMEZ	57594	hgsc.bcm.edu	37	14	23744827	23744829	+	In_Frame_Del	DEL	TCC	TCC	-	rs67447855	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	23	112	0	0.169118	0	TCC|0.500;-|0.500	0.500	weak	.	HOMEZ	80	.	NM_020834	exon2	c.1609_1611del	p.537_537del	.	.	PASS	Atlas-Indel
TIGD6	81789	hgsc.bcm.edu	37	5	149374880	149374880	+	Frame_Shift_Del	DEL	T	T	-	rs3832324	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	98	237	.	0.422	.	T|0.470;-|0.530	0.530	strong	.	TIGD6	29	.	NM_030953	exon2	c.1033delG	p.E345fs	.	.	PASS	Pindel,Atlas-Indel
SHROOM4	57477	hgsc.bcm.edu	37	X	50350758	50350759	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	rs201922875	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	18	65	.	0.305	.	-|0.664;TGCTGCTGCTGT|0.336	0.336	strong	.	SHROOM4	171	.	NM_020717	exon6	c.3384_3385insACAGCAGCAGCA	p.Q1128delinsQQQQQ	.	.	PASS	Pindel,Atlas-Indel
HOXA1	3198	hgsc.bcm.edu	37	7	27135314	27135316	+	In_Frame_Del	DEL	CGA	CGA	-	rs368428758	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CGA	CGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	33	43	0	0.540984	0	.	.	weak	.	HOXA1	64	.	NM_005522	exon1	c.217_219del	p.73_73del	.	.	PASS	Atlas-Indel
HLA-B	3106	hgsc.bcm.edu	37	6	31324601	31324602	+	Frame_Shift_Ins	INS	-	-	A	rs9281379	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	19	99	0	0.76	0	.	.	weak	.	HLA-B	54	.	NM_005514	exon2	c.207_208insT	p.E69fs	.	.	PASS	Atlas-Indel
DNAJC28	54943	hgsc.bcm.edu	37	21	34860750	34860754	+	Frame_Shift_Del	DEL	AATTA	AATTA	-	rs139852262	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AATTA	AATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	54	157	.	0.325	.	AATTA|0.826;-|0.174	0.174	strong	.	DNAJC28	47	.	NM_001040192	exon2	c.948_952del	p.316_318del	.	.	PASS	Pindel,Atlas-Indel
RRP15	51018	hgsc.bcm.edu	37	1	218504400	218504400	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	54	143	.	0.351	.	.	.	none	.	RRP15	33	.	NM_016052	exon5	c.815delG	p.S272fs	.	.	PASS	Pindel,Atlas-Indel
KRTAP17-1	83902	hgsc.bcm.edu	37	17	39471753	39471767	+	In_Frame_Del	DEL	GCCCCCGCAGCCAGA	GCCCCCGCAGCCAGA	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GCCCCCGCAGCCAGA	GCCCCCGCAGCCAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	17	40	.	0.436	.	.	.	none	.	KRTAP17-1	14	.	NM_031964	exon1	c.137_151del	p.46_51del	.	.	PASS	Pindel,Atlas-Indel
ATF7IP2	80063	hgsc.bcm.edu	37	16	10565979	10565981	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	10	21	.	0.385	.	.	.	none	.	ATF7IP2	40	.	NM_001256160	exon9	c.1364_1366del	p.455_456del	.	.	PASS	Pindel,Atlas-Indel
NCOA3	8202	hgsc.bcm.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	rs147879509	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	23	90	0	0.270588	0	CAG|0.669;-|0.331	0.331	strong	NCOA3,NS,carcinoma,0,1	NCOA3	156	1	NM_181659	exon20	c.3762_3764del	p.1254_1255del	.	.	PASS	Atlas-Indel
PIEZO1	9780	hgsc.bcm.edu	37	16	88787608	88787610	+	In_Frame_Del	DEL	CTT	CTT	-	rs150376294	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	12	34	.	0.375	.	CTT|0.800;-|0.200	0.200	strong	.	PIEZO1	79	.	NM_001142864	exon39	c.5633_5635del	p.1878_1879del	.	.	PASS	Pindel,Atlas-Indel
PCDHGB4	8641	hgsc.bcm.edu	37	5	140767492	140767497	+	In_Frame_Del	DEL	TGCCAG	TGCCAG	-	rs145222727	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGCCAG	TGCCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	482	60	603	0	0.124481	0	.	.	weak	.	PCDHGB4	125	.	NM_003736	exon1	c.40_45del	p.14_15del	.	.	PASS	Atlas-Indel
ZNF570	148268	hgsc.bcm.edu	37	19	37976121	37976123	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	25	80	.	0.309	.	.	.	none	ZNF570,NS,carcinoma,+2,1	ZNF570	58	1	NM_144694	exon5	c.1596_1598del	p.532_533del	.	.	PASS	Pindel,Atlas-Indel
PI4KAP2	375133	hgsc.bcm.edu	37	22	21841122	21841126	+	RNA	DEL	TCTTA	TCTTA	-	rs200598591	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TCTTA	TCTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	29	245	0	0.163842	0	TCTTA|0.738;-|0.262	0.262	strong	.	PI4KAP2	11	.	.	.	.	.	.	.	PASS	Atlas-Indel
GDPD4	220032	hgsc.bcm.edu	37	11	76954788	76954789	+	Frame_Shift_Ins	INS	-	-	A	rs34784710	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	25	85	.	0.272	.	-|0.773;A|0.227	0.227	strong	.	GDPD4	49	.	NM_182833	exon12	c.1192_1193insT	p.I398fs	.	.	PASS	Pindel,Atlas-Indel
APOBEC3H	164668	hgsc.bcm.edu	37	22	39496323	39496325	+	In_Frame_Del	DEL	AAC	AAC	-	rs140936762	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	51	172	.	0.305	.	AAC|0.696;-|0.304	0.304	strong	.	APOBEC3H	28	.	NM_181773	exon2	c.39_41del	p.13_14del	.	.	PASS	Pindel,Atlas-Indel
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38482353	38482394	+	In_Frame_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	16	146	.	0.250	.	.	.	none	.	BAIAP2L2	39	.	NM_025045	exon12	c.1323_1364del	p.441_455del	.	.	PASS	Pindel
RIMBP3C	150221	hgsc.bcm.edu	37	22	21904075	21904077	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	33	217	.	0.154	.	.	.	none	.	RIMBP3C	6	.	NM_001128633	exon1	c.1190_1192del	p.397_398del	.	.	PASS	Pindel
CLDN16	10686	hgsc.bcm.edu	37	3	190106073	190106074	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	58	211	.	0.264	.	.	.	none	.	CLDN16	59	.	NM_006580	exon1	c.164_165del	p.55_55del	.	.	PASS	Pindel
DARS	1615	hgsc.bcm.edu	37	2	136690415	136690415	+	Splice_Site	DEL	A	A	-	rs34744196	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	16	34	.	0.296	.	A|1.000;|0.000	.	weak	.	DARS	44	.	NM_001349	exon8	c.505-2T>-	.	.	.	PASS	Pindel
ZNF83	55769	hgsc.bcm.edu	37	19	53116934	53117017	+	In_Frame_Del	DEL	CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT	CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT	CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	10	76	.	0.179	.	.	.	none	.	ZNF83	73	.	NM_001105551	exon5	c.802_885del	p.268_295del	.	.	PASS	Pindel
ACOT4	122970	hgsc.bcm.edu	37	14	74060512	74060517	+	In_Frame_Del	DEL	AGCTTA	AGCTTA	-	rs373880503	bycluster;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	AGCTTA	AGCTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	21	120	.	0.323	.	.	.	alt	.	ACOT4	25	.	NM_152331	exon2	c.563_568del	p.188_190del	.	.	PASS	Pindel
KIAA2018	205717	hgsc.bcm.edu	37	3	113376110	113376111	+	In_Frame_Ins	INS	-	-	TGC	rs10531304	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	27	106	.	0.189	.	.	.	alt	.	KIAA2018	180	.	NM_001009899	exon7	c.4419_4420insGCA	p.Q1473delinsQQ	.	.	PASS	Pindel
DCAF8	50717	hgsc.bcm.edu	37	1	160209874	160209885	+	In_Frame_Del	DEL	CTCTTCTTCCTC	CTCTTCTTCCTC	-	rs199748027	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTCTTCTTCCTC	CTCTTCTTCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	24	75	.	0.289	.	CTCTTCTTCCTC|0.992;-|0.008	0.008	strong	.	DCAF8	64	.	NM_015726	exon4	c.326_337del	p.109_113del	.	.	PASS	Pindel
AUTS2	26053	hgsc.bcm.edu	37	7	70255576	70255577	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	21	58	.	0.333	.	.	.	none	.	AUTS2	173	.	NM_015570	exon19	c.3374_3375insCCA	p.S1125delinsSH	.	.	PASS	Pindel
OXA1L	5018	hgsc.bcm.edu	37	14	23240713	23240714	+	In_Frame_Ins	INS	-	-	AGC	rs148216086	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	37	118	.	0.282	.	-|0.809;AGC|0.191	0.191	strong	.	OXA1L	49	.	NM_005015	exon10	c.1434_1435insAGC	p.P478delinsPS	.	.	PASS	Pindel
ZNF516	9658	hgsc.bcm.edu	37	18	74090958	74090958	+	Frame_Shift_Del	DEL	G	G	-	rs56087742	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	13	28	.	0.448	.	G|0.016;-|0.984	0.984	strong	.	ZNF516	102	.	NM_014643	exon5	c.3112delG	p.V1038fs	.	.	PASS	Pindel
ZNF233	353355	hgsc.bcm.edu	37	19	44778796	44778799	+	Frame_Shift_Del	DEL	GTTG	GTTG	-	rs59660444	bycluster;by1000genomes;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	GTTG	GTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	19	33	.	0.679	.	-|0.300;G|0.700	0.300	alt	.	ZNF233	73	.	NM_001207005	exon5	c.1982_1985del	p.661_662del	.	.	PASS	Pindel
CNDP1	84735	hgsc.bcm.edu	37	18	72223591	72223592	+	In_Frame_Ins	INS	-	-	TGC	rs10663835	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	30	87	.	0.294	.	-|0.500;TGC|0.500	0.500	strong	.	CNDP1	98	.	NM_032649	exon2	c.43_44insTGC	p.V15delinsVL	.	.	PASS	Pindel
OR5P2	120065	hgsc.bcm.edu	37	11	7818383	7818384	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC	rs138967151	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	27	79	.	0.675	.	.	.	strong	.	OR5P2	68	.	NM_153444	exon1	c.107_108insGCATCTACCTGGTAACCATAT	p.S36delinsCIYLVTIS	.	.	PASS	Pindel
VILL	50853	hgsc.bcm.edu	37	3	38040434	38040435	+	In_Frame_Ins	INS	-	-	CAC	rs143137431	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	20	79	.	0.299	.	.	.	strong	.	VILL	61	.	NM_015873	exon9	c.974_975insCAC	p.Y325delinsYT	.	.	PASS	Pindel
DCHS2	54798	hgsc.bcm.edu	37	4	155244402	155244405	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs140019361	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	14	40	.	0.292	.	TTTG|0.214;-|0.786	0.786	strong	DCHS2_ENST00000339452,caecum,carcinoma,+2,2	DCHS2	594	2	NM_001142552	exon8	c.4096_4099del	p.1366_1367del	.	.	PASS	Pindel
BEST3	144453	hgsc.bcm.edu	37	12	70088220	70088220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	27	50	.	0.338	.	.	.	none	.	BEST3	129	.	NM_032735	exon3	c.178delC	p.R60fs	.	.	PASS	Pindel
HOXA1	3198	hgsc.bcm.edu	37	7	27135317	27135319	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	26	42	.	0.426	.	.	.	none	.	HOXA1	64	.	NM_005522	exon1	c.214_216del	p.72_72del	.	.	PASS	Pindel
RHBG	57127	hgsc.bcm.edu	37	1	156354348	156354348	+	Frame_Shift_Del	DEL	C	C	-	rs11303415	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	43	117	.	0.307	.	-|1.000;|0.000	1.000	strong	.	RHBG	133	.	NM_020407	exon9	c.1264delT	p.S422fs	.	.	PASS	Pindel
RNU6-28	100873756	hgsc.bcm.edu	37	15	43739687	43739687	+	RNA	DEL	A	A	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	10	48	.	0.164	.	.	.	none	.	.	.	.	.	.	.	.	.	.	PASS	Pindel
HMGN2P46	283651	hgsc.bcm.edu	37	15	45848231	45848231	+	RNA	DEL	T	T	-	rs368577527		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	10	36	.	0.244	.	.	.	weak	.	.	.	.	.	.	.	.	.	.	PASS	Pindel
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483155	38483156	+	In_Frame_Ins	INS	-	-	TCATGGGTG	rs142739979	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	21	79	.	0.309	.	.	.	strong	BAIAP2L2,NS,carcinoma,0,4	BAIAP2L2	39	4	NM_025045	exon11	c.1235_1236insCACCCATGA	p.N412delinsTPMN	.	.	PASS	Pindel
LIMK2	3985	hgsc.bcm.edu	37	22	31672776	31672777	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	23	71	.	0.329	.	.	.	none	.	LIMK2	101	.	NM_001031801	exon15	c.1711_1712insC	p.A571fs	.	.	PASS	Pindel
JAKMIP3	282973	hgsc.bcm.edu	37	10	133954074	133954151	+	Frame_Shift_Del	DEL	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	-	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	CTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGGCTTGGAGGAGGTAACGAGGGTCTCCTGCCGGGTCCTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	17	53	.	0.304	.	.	.	none	.	JAKMIP3	69	.	NM_001105521	exon9	c.1463_1473del	p.488_491del	.	.	PASS	Pindel
DNAH2	146754	hgsc.bcm.edu	37	17	7722365	7722365	+	Missense_Mutation	SNP	C	C	T	rs7213894	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	62	40	0	1	0	C|0.377;N|0.000	.	strong	.	DNAH2	498	.	NM_020877	exon70	c.C10799T	p.T3600I	TCAACACTGACTT	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3750622	3750622	+	Silent	SNP	A	A	C	rs1046271	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	68	134	0	0.462585	0	A|0.434;C|0.566	0.566	strong	.	TJP3	79	.	NM_001267561	exon21	c.A2727C	p.V909V	GCGAGTACATGAT	.	PASS	Atlas-SNP
DNAJC30	84277	hgsc.bcm.edu	37	7	73097238	73097238	+	Silent	SNP	G	G	A	rs1569062	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	25	71	0	0.384615	0	G|0.763;A|0.237	0.237	strong	.	DNAJC30	12	.	NM_032317	exon1	c.C516T	p.Y172Y	TTCCCCGTAGTGG	.	PASS	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	37	3	121208833	121208833	+	Missense_Mutation	SNP	G	G	C	rs3218649	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	26	75	0	0.5	0	G|0.377;C|0.623	0.623	strong	.	POLQ	273	.	NM_199420	exon16	c.C2945G	p.T982R	GAACATGTCTGAT	.	PASS	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	37	1	91404352	91404352	+	Silent	SNP	A	A	G	rs149082287	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	42	88	0	0.512195	0	A|0.999;G|0.001	0.001	strong	.	ZNF644	120	.	NM_201269	exon3	c.T2559C	p.Y853Y	TGTTTCATAACTA	.	PASS	Atlas-SNP
ZNF18	7566	hgsc.bcm.edu	37	17	11881356	11881356	+	Missense_Mutation	SNP	G	G	A	rs117755721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	45	105	0	0.459184	0	G|0.982;A|0.018	0.018	strong	.	ZNF18	42	.	NM_144680	exon9	c.C1568T	p.S523L	CAGTGCGAACATT	.	PASS	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	37	3	184049807	184049807	+	Silent	SNP	C	C	T	rs11559218	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	44	114	0	0.411215	0	C|0.995;T|0.005	0.005	strong	.	EIF4G1	151	.	NM_001194946	exon33	c.C4572T	p.D1524D	GTGTGACGAGCAG	.	PASS	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	37	11	66460527	66460527	+	Silent	SNP	C	C	T	rs639938	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	59	106	0	0.475806	0	C|0.938;T|0.062	0.062	strong	.	SPTBN2	188	.	NM_006946	exon24	c.G4899A	p.L1633L	TTGCTCCAGCACC	.	PASS	Atlas-SNP
CHMP6	79643	hgsc.bcm.edu	37	17	78968837	78968837	+	Silent	SNP	C	C	A	rs146625286	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	78	161	0	0.450867	0	C|0.999;A|0.001	0.001	strong	.	CHMP6	16	.	NM_024591	exon3	c.C192A	p.L64L	GCTGCTCAAGAAG	.	PASS	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56088811	56088811	+	Missense_Mutation	SNP	T	T	C	rs78599516	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	31	189	0	0.158974	0	T|0.746;C|0.254	0.254	strong	.	PSPH	23	.	NM_004577	exon4	c.A95G	p.D32G	AGCTCATCGATTC	.	PASS	Atlas-SNP
SHISA3	152573	hgsc.bcm.edu	37	4	42400112	42400112	+	Missense_Mutation	SNP	G	G	T	rs11733156	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	23	38	0	0.575	0	G|0.801;T|0.199	0.199	strong	.	SHISA3	27	.	NM_001080505	exon1	c.G39T	p.W13C	TGGCTGGCTGCGC	.	PASS	Atlas-SNP
OR6C70	390327	hgsc.bcm.edu	37	12	55863398	55863398	+	Silent	SNP	G	G	A	rs12313730	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	44	74	0	0.505747	0	G|0.814;A|0.186	0.186	strong	.	OR6C70	35	.	NM_001005499	exon1	c.C525T	p.F175F	ACAAATGAAATGA	.	PASS	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	37	5	140605445	140605445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	2	185	1	0.0115607	0.00540541	.	.	none	PCDHB14,NS,carcinoma,0,5	PCDHB14	132	5	NM_018934	exon1	c.C2368T	p.R790X	AACTTTCGAAATA	.	scavenged	Atlas-SNP
NASP	4678	hgsc.bcm.edu	37	1	46073489	46073489	+	Silent	SNP	G	G	A	rs2230657	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	73	116	0	0.536765	0	G|0.444;A|0.556	0.556	strong	NASP,colon,carcinoma,0,1	NASP	77	1	NM_002482	exon6	c.G906A	p.P302P	AGACCCGACAGTC	.	PASS	Atlas-SNP
BTNL8	79908	hgsc.bcm.edu	37	5	180374534	180374534	+	Silent	SNP	G	G	A	rs3733756	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	99	250	0	0.409091	0	G|0.508;A|0.492	0.492	strong	BTNL8_ENST00000340184,NS,carcinoma,0,2	BTNL8	114	2	NM_001159708	exon4	c.G696A	p.S232S	TATATCGTGGCAC	.	PASS	Atlas-SNP
POM121	9883	hgsc.bcm.edu	37	7	72413243	72413243	+	Missense_Mutation	SNP	A	A	C	rs437678	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	370	5	456	0	0.0135135	0	A|0.500;C|0.500	0.500	strong	POM121_ENST00000395270,NS,carcinoma,0,6	POM121	131	6	NM_172020	exon11	c.A1916C	p.H639P	CCCTGCACACTGC	.	scavenged	Atlas-SNP
CYP2C9	1559	hgsc.bcm.edu	37	10	96701987	96701987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	4	207	1	0.0167364	0.00483092	.	.	none	CYP2C9,right_upper_lobe,carcinoma,-1,1	CYP2C9	82	1	NM_000771	exon3	c.C370T	p.R124W	GAGATCCGGCGTT	.	scavenged	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	37	21	38081480	38081480	+	Missense_Mutation	SNP	C	C	T	rs116988298	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	29	68	0	0.402778	0	C|0.967;T|0.033	0.033	strong	.	SIM2	55	.	NM_005069	exon2	c.C188T	p.A63V	GAGACGCGTGGGG	.	PASS	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	37	6	43252029	43252029	+	Missense_Mutation	SNP	T	T	C	rs3800298	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	16	16	26	0	1	0	T|0.667;C|0.333	0.333	strong	TTBK1,NS,carcinoma,0,1	TTBK1	124	1	NM_032538	exon14	c.T3551C	p.L1184S	CAGCATTGGACAC	.	PASS	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	37	13	36385031	36385031	+	Silent	SNP	G	G	T	rs2322807	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	51	135	0	0.435897	0	G|0.713;T|0.287	0.287	strong	.	DCLK1	350	.	NM_004734	exon12	c.C1629A	p.P543P	GTACAGGGGGCCG	.	PASS	Atlas-SNP
UHRF1BP1	54887	hgsc.bcm.edu	37	6	34831856	34831856	+	Missense_Mutation	SNP	T	T	C	rs13205210	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	58	85	0	0.527273	0	T|0.851;C|0.149	0.149	strong	.	UHRF1BP1	102	.	NM_017754	exon15	c.T3293C	p.M1098T	TCTCCATGAAGAG	.	PASS	Atlas-SNP
HOMEZ	57594	hgsc.bcm.edu	37	14	23746269	23746269	+	Silent	SNP	C	C	G	rs1057119	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	90	155	0	0.511364	0	C|0.797;G|0.203	0.203	strong	.	HOMEZ	80	.	NM_020834	exon2	c.G168C	p.T56T	TGCTTGCGTCCAC	.	PASS	Atlas-SNP
RNASET2	8635	hgsc.bcm.edu	37	6	167343141	167343141	+	Missense_Mutation	SNP	G	G	A	rs11159	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	37	66	0	0.552239	0	G|0.914;A|0.086	0.086	strong	RNASET2,colon,carcinoma,0,2	RNASET2	18	2	NM_003730	exon9	c.C706T	p.R236W	GACCCCGGCTCTC	.	PASS	Atlas-SNP
CPSF4	10898	hgsc.bcm.edu	37	7	99047978	99047978	+	Silent	SNP	T	T	C	rs883403	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	36	113	0	0.387097	0	T|0.639;C|0.361	0.361	strong	.	CPSF4	24	.	NM_001081559	exon4	c.T387C	p.R129R	TGACCGTGGCTTC	.	PASS	Atlas-SNP
ECE2	9718	hgsc.bcm.edu	37	3	183995839	183995839	+	Splice_Site	SNP	T	T	C	rs56080981	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	35	83	0	0.426829	0	.	.	weak	.	ECE2	303	.	NM_014693	exon5	c.957+2T>C	.	AGAAGGTAGGGCC	.	PASS	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	37	8	9564437	9564437	+	Silent	SNP	A	A	G	rs7006985	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	144	143	0	0.993103	0	A|0.409;G|0.590	0.590	strong	TNKS_ENST00000310430,NS,carcinoma,0,1	TNKS	198	1	NM_003747	exon8	c.A1386G	p.T462T	TCCTACATTAGTC	.	PASS	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	37	1	16042766	16042766	+	Missense_Mutation	SNP	T	T	C	rs12091750	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	12	18	0	0.461538	0	T|0.665;C|0.335	0.335	strong	PLEKHM2_ENST00000375799,NS,carcinoma,0,2	PLEKHM2	94	2	NM_015164	exon2	c.T95C	p.I32T	ATGAGATCCCTGC	.	PASS	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	37	1	157504433	157504433	+	Missense_Mutation	SNP	C	C	G	rs73011568	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	47	133	0	0.443396	0	C|0.903;G|0.097	0.097	strong	FCRL5,colon,carcinoma,-1,1	FCRL5	177	1	NM_031281	exon8	c.G1652C	p.R551P	TCACTGCGCTGGG	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144921924	144921924	+	Silent	SNP	G	G	A	rs71664015	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	358	95	307	0	0.265363	0	A|0.001;C|0.795	0.001	strong	.	PDE4DIP	817	.	NM_001002811	exon5	c.C1594T	p.L532L	CAGCCAGTTGGCG	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197073932	197073932	+	Silent	SNP	T	T	C	rs2878749	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	42	59	0	0.482759	0	T|0.719;C|0.281	0.281	strong	.	ASPM	444	.	NM_018136	exon18	c.A4449G	p.K1483K	AATATATTTCCGT	.	PASS	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103394239	103394239	+	Silent	SNP	C	C	T	rs16960471	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	75	136	0	0.517241	0	C|0.924;T|0.076	0.076	strong	.	.	.	.	NM_001146197	exon4	c.G8808A	p.P2936P	CCTTAACGGTCCA	.	PASS	Atlas-SNP
NIT1	4817	hgsc.bcm.edu	37	1	161088583	161088583	+	Missense_Mutation	SNP	T	T	G	rs41270017	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	27	51	0	0.442623	0	T|0.917;G|0.083	0.083	strong	.	NIT1	41	.	NM_001185092	exon2	c.T10G	p.F4V	CTGGGCTTCATCA	.	PASS	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	37	8	1806229	1806229	+	Silent	SNP	A	A	C	rs4875950	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	105	156	0	0.514706	0	A|0.720;C|0.280	0.280	strong	.	ARHGEF10	255	.	NM_014629	exon3	c.A141C	p.P47P	GGCCCCATCCGCC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214818846	214818846	+	Missense_Mutation	SNP	A	A	G	rs3790646	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	87	138	0	0.54717	0	A|0.920;G|0.080	0.080	strong	.	CENPF	321	.	NM_016343	exon13	c.A5933G	p.D1978G	CACTGGATCAGTT	.	PASS	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55541450	55541450	+	Missense_Mutation	SNP	G	G	A	rs446227	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	71	164	0	0.529851	0	G|0.766;A|0.233	0.233	strong	.	RP1	429	.	NM_006269	exon4	c.G5008A	p.A1670T	AGGAAAGCAAGTC	.	PASS	Atlas-SNP
SFTPB	6439	hgsc.bcm.edu	37	2	85895338	85895338	+	Missense_Mutation	SNP	T	T	G	rs2077079	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	316	135	338	1	0.427215	0.00295858	T|0.576;G|0.424	0.424	strong	.	SFTPB	49	.	NM_198843	exon2	c.A5C	p.H2P	GCTTGGTGCATGG	.	PASS	Atlas-SNP
GSTP1	2950	hgsc.bcm.edu	37	11	67352640	67352640	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	3	83	0	0.026087	0	.	.	none	GSTP1,NS,carcinoma,0,1	GSTP1	21	1	NM_000852	exon5	c.C264T	p.A88A	GGCAGCCCTGGTG	.	scavenged	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204966428	204966428	+	Missense_Mutation	SNP	C	C	G	rs2802808	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	111	216	0	0.538835	0	C|0.678;G|0.322	0.322	strong	NFASC_ENST00000339876,caecum,carcinoma,0,2	NFASC	396	2	NM_001005388	exon25	c.C2913G	p.I971M	CACCATCGCCACC	.	PASS	Atlas-SNP
TNFSF4	7292	hgsc.bcm.edu	37	1	173155860	173155860	+	Missense_Mutation	SNP	C	C	T	rs146261831	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	79	205	0	0.44382	0	C|1.000;T|0.000	0.000	weak	.	TNFSF4	29	.	NM_003326	exon3	c.G347A	p.S116N	TGAAGGCTAATGT	.	PASS	Atlas-SNP
PYROXD2	84795	hgsc.bcm.edu	37	10	100144782	100144782	+	Missense_Mutation	SNP	C	C	T	rs2296441	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	27	56	0	0.457627	0	C|0.662;T|0.338	0.338	strong	.	PYROXD2	43	.	NM_032709	exon15	c.G1597A	p.A533T	GGCGGGCGAAGTA	.	PASS	Atlas-SNP
ZNF71	58491	hgsc.bcm.edu	37	19	57133633	57133633	+	Silent	SNP	C	C	T	rs35011777	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	83	138	0	0.463687	0	C|0.960;T|0.040	0.040	strong	.	ZNF71	69	.	NM_021216	exon3	c.C978T	p.Y326Y	GCCCTACGTGTGC	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78263486	78263486	+	Missense_Mutation	SNP	T	T	C	rs17853989	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	65	105	1	0.515873	0.00952381	T|0.759;C|0.241	0.241	strong	RNF213_ENST00000411702,NS,carcinoma,0,2	RNF213	766	2	NM_001256071	exon6	c.T962C	p.M321T	ACGAGATGGCTGC	.	scavenged	Atlas-SNP
NFATC4	4776	hgsc.bcm.edu	37	14	24843620	24843620	+	Silent	SNP	T	T	C	rs2295298	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	61	131	0	0.438849	0	T|0.629;C|0.371	0.371	strong	.	NFATC4	115	.	NM_001198967	exon7	c.T2010C	p.T670T	ACTGACTGGCTCC	.	PASS	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	37	19	53644386	53644386	+	Silent	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	3	49	1	0.038961	0.0204082	.	.	none	ZNF347,NS,carcinoma,0,1	ZNF347	87	1	NM_001172675	exon5	c.A1698T	p.G566G	TTTTTCTCCAGTA	.	scavenged	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	37	12	46321158	46321158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	64	117	0	0.512	0	.	.	none	SCAF11,NS,carcinoma,0,1	SCAF11	145	1	NM_004719	exon11	c.A2326C	p.S776R	TTGGGCTTTCAGA	.	PASS	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	37	18	9255982	9255982	+	Missense_Mutation	SNP	A	A	G	rs4798791	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	86	76	0	1	0	A|0.446;G|0.554	0.554	strong	.	ANKRD12	167	.	NM_015208	exon9	c.A2717G	p.K906R	GAGAAAAGATGGA	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	613307	613307	+	Silent	SNP	C	C	T	rs2301778	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	67	102	0	0.544715	0	C|0.712;T|0.288	0.288	strong	.	HCN2	36	.	NM_001194	exon6	c.C1644T	p.A548A	CAACGCCGACCCC	.	PASS	Atlas-SNP
SMTN	6525	hgsc.bcm.edu	37	22	31491295	31491295	+	Missense_Mutation	SNP	G	G	C	rs3205187	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	19	48	0	0.422222	0	G|0.465;C|0.535	0.535	strong	.	SMTN	219	.	NM_001207017	exon13	c.G1894C	p.A632P	ATGGAAGCAGAGC	.	PASS	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42787469	42787469	+	Silent	SNP	A	A	G	rs2240859	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	97	85	0	1	0	A|0.512;G|0.488	0.488	strong	.	CCDC13	71	.	NM_144719	exon7	c.T771C	p.S257S	TGGCGAAGATAGG	.	PASS	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	37	9	32631966	32631966	+	Silent	SNP	G	G	A	rs62640051	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	346	173	340	0	0.5	0	G|0.906;A|0.094	0.094	strong	.	TAF1L	382	.	NM_153809	exon1	c.C3612T	p.V1204V	TTTTCGGACTGTC	.	PASS	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	37	16	11001821	11001821	+	Silent	SNP	C	C	T	rs45621432	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	42	67	0	0.488372	0	C|0.983;T|0.017	0.017	strong	.	CIITA	92	.	NM_000246	exon11	c.C2472T	p.H824H	GCAGCACGTGGTA	.	PASS	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	37	6	42992808	42992808	+	Silent	SNP	T	T	C	rs3749904	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	42	85	0	0.538462	0	T|0.691;C|0.309	0.309	strong	.	RRP36	20	.	NM_033112	exon2	c.T216C	p.N72N	TGGAAATAGTCCT	.	PASS	Atlas-SNP
MPHOSPH9	10198	hgsc.bcm.edu	37	12	123664514	123664514	+	Silent	SNP	G	G	A	rs1727301	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	79	223	0	0.372642	0	G|0.666;A|0.334	0.334	strong	.	MPHOSPH9	75	.	NM_022782	exon11	c.C1857T	p.N619N	CAATTTGTTCTCA	.	PASS	Atlas-SNP
NAV1	89796	hgsc.bcm.edu	37	1	201780773	201780773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	3	161	0	0.015873	0	.	.	none	NAV1,colon,carcinoma,0,1	NAV1	143	1	NM_020443	exon25	c.C4840T	p.R1614W	ATAGACCGGGAAA	.	scavenged	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11188806	11188806	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	17	156	0	0.0977011	0	.	.	none	AMAC1L2,trunk,malignant_melanoma,0,1	.	.	1	NM_054028	exon1	c.G191C	p.G64A	ACCAGGGTTCCAA	.	scavenged	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	37	11	78482155	78482155	+	Silent	SNP	G	G	A	rs116862565	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	57	115	0	0.508929	0	G|0.993;A|0.007	0.007	strong	ODZ4_ENST00000278550,NS,carcinoma,0,2	.	.	2	NM_001098816	exon18	c.C2421T	p.N807N	TCTGCCGTTGCCA	.	PASS	Atlas-SNP
STK33	65975	hgsc.bcm.edu	37	11	8435077	8435077	+	Missense_Mutation	SNP	C	C	T	rs3751095	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	403	188	374	0	0.466501	0	C|0.785;T|0.215	0.215	strong	.	STK33	147	.	NM_030906	exon13	c.G1309A	p.A437T	AATTGGCATCAGG	.	PASS	Atlas-SNP
PTPN5	84867	hgsc.bcm.edu	37	11	18764026	18764026	+	Missense_Mutation	SNP	G	G	C	rs4757707	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	28	57	0	0.482759	0	G|0.702;C|0.298	0.298	strong	PTPN5_ENST00000358540,caecum,carcinoma,0,3	PTPN5	163	3	NM_032781	exon7	c.C508G	p.P170A	GCTCTGGGGGTGT	.	PASS	Atlas-SNP
TBX2	6909	hgsc.bcm.edu	37	17	59485555	59485555	+	Silent	SNP	C	C	T	rs1057987	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	79	66	0	0.9875	0	C|0.456;G|0.000;T|0.544	0.544	strong	.	TBX2	30	.	NM_005994	exon7	c.C1827T	p.S609S	CCGGAGCCCCTTC	.	PASS	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	37	1	185143721	185143721	+	Missense_Mutation	SNP	A	A	G	rs10489579	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	91	159	0	0.47644	0	G|0.396;N|0.000	0.396	strong	.	SWT1	88	.	NM_017673	exon5	c.A442G	p.I148V	CATGGAATTAAAA	.	PASS	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49701298	49701298	+	Missense_Mutation	SNP	G	G	A	rs2005557	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	199	256	0	0.995	0	G|0.472;A|0.528	0.528	strong	BSN,NS,adenoma,0,1	BSN	272	1	NM_003458	exon8	c.G11587A	p.A3863T	CAGCCAGCACCAG	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466482	10466482	+	Missense_Mutation	SNP	G	G	A	rs13267180	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	56	106	0	0.455285	0	G|0.614;A|0.386	0.386	strong	RP1L1,colon,carcinoma,-1,1	RP1L1	453	1	NM_178857	exon4	c.C5126T	p.A1709V	CCAGGGGCCACCT	.	PASS	Atlas-SNP
UBQLNL	143630	hgsc.bcm.edu	37	11	5537161	5537161	+	Missense_Mutation	SNP	A	A	G	rs2047456	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	59	111	0	0.5	0	A|0.694;G|0.306	0.306	strong	.	UBQLNL	74	.	NM_145053	exon1	c.T511C	p.C171R	CTTTGCACTCTGG	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	37	16	24801737	24801737	+	Missense_Mutation	SNP	G	G	A	rs6497759	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	62	138	0	0.424658	0	G|0.839;A|0.161	0.161	strong	.	TNRC6A	171	.	NM_014494	exon6	c.G1774A	p.A592T	AATGGCGCAAATT	.	PASS	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	37	18	47363963	47363963	+	Missense_Mutation	SNP	T	T	C	rs112417235	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	311	115	291	1	0.369775	0.00343643	T|0.979;C|0.021	0.021	strong	.	MYO5B	178	.	NM_001080467	exon37	c.A5062G	p.M1688V	TGATCATGTAGAA	.	PASS	Atlas-SNP
SLC13A3	64849	hgsc.bcm.edu	37	20	45242269	45242269	+	Silent	SNP	G	G	C	rs2273024	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	80	121	0	0.526316	0	G|0.680;C|0.320	0.320	strong	.	SLC13A3	88	.	NM_022829	exon2	c.C207G	p.L69L	GGGGAAGAGGACG	.	PASS	Atlas-SNP
PRG2	5553	hgsc.bcm.edu	37	11	57157405	57157405	+	Silent	SNP	A	A	G	rs490358	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	74	92	0	1	0	A|0.292;G|0.708	0.708	strong	.	PRG2	65	.	NM_001243245	exon2	c.T13C	p.L5L	GAAGTAAGGGGAG	.	PASS	Atlas-SNP
C11orf21	29125	hgsc.bcm.edu	37	11	2323022	2323022	+	Missense_Mutation	SNP	C	C	T	rs12276847	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	37	61	0	0.440476	0	C|0.750;T|0.250	0.250	strong	.	C11orf21	11	.	NM_001142946	exon1	c.G70A	p.V24M	ATCCCACACCAGG	.	PASS	Atlas-SNP
RASAL3	64926	hgsc.bcm.edu	37	19	15569378	15569378	+	Missense_Mutation	SNP	G	G	C	rs58123634	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	48	125	0	0.45283	0	G|0.967;C|0.033	0.033	strong	.	RASAL3	49	.	NM_022904	exon7	c.C751G	p.L251V	GGTGCAGTGGCCA	.	PASS	Atlas-SNP
MGMT	4255	hgsc.bcm.edu	37	10	131265545	131265545	+	Silent	SNP	C	C	T	rs16906252	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	29	68	0	0.408451	0	C|0.966;T|0.034	0.034	strong	.	MGMT	32	.	NM_002412	exon1	c.C66T	p.R22R	GGTGCGCACCGTT	.	PASS	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234529519	234529519	+	Silent	SNP	C	C	T	rs1802871	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	60	211	0	0.337079	0	C|0.797;T|0.203	0.203	strong	TARBP1,caecum,carcinoma,0,1	TARBP1	111	1	NM_005646	exon27	c.G4308A	p.P1436P	GTTCCACGGGATA	.	PASS	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	37	14	68024134	68024134	+	Missense_Mutation	SNP	A	A	T	rs3825723	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	18	34	0	0.418605	0	A|0.828;T|0.172	0.172	strong	.	PLEKHH1	118	.	NM_020715	exon4	c.A338T	p.Q113L	AGAAGCAGGTAAG	.	PASS	Atlas-SNP
CLDN20	49861	hgsc.bcm.edu	37	6	155597147	155597147	+	Silent	SNP	C	C	T	rs1555774	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	160	138	0	0.993789	0	C|0.681;T|0.319	0.319	strong	.	CLDN20	10	.	NM_001001346	exon2	c.C294T	p.S98S	CACTTCCACAGTA	.	PASS	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	37	17	39622068	39622068	+	Missense_Mutation	SNP	G	G	T	rs2071561	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	65	141	0	0.439189	0	G|0.553;T|0.445	0.445	strong	.	KRT32	57	.	NM_002278	exon3	c.C665A	p.S222Y	TTCAGGGACTCAA	.	PASS	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	37	13	95034749	95034749	+	Missense_Mutation	SNP	G	G	A	rs1535692	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	68	126	0	0.472222	0	G|0.835;A|0.165	0.165	strong	GPC6,NS,carcinoma,0,1	GPC6	102	1	NM_005708	exon7	c.G1234A	p.V412M	GAGAGCGTGACAG	.	PASS	Atlas-SNP
STYXL1	51657	hgsc.bcm.edu	37	7	75634687	75634687	+	Silent	SNP	G	G	A	rs1044484	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	67	170	0	0.492647	0	G|0.900;A|0.100	0.100	strong	.	STYXL1	35	.	NM_016086	exon6	c.C489T	p.I163I	TGGCACGATTTCA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412561	105412561	+	Missense_Mutation	SNP	C	C	T	rs3000771	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	91	205	0	0.968085	0	C|0.635;T|0.365	0.365	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G9227A	p.R3076H	CCCTTGCGATCTA	.	PASS	Atlas-SNP
TGM1	7051	hgsc.bcm.edu	37	14	24728294	24728294	+	Silent	SNP	G	G	T	rs1126432	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	43	67	0	0.5375	0	G|0.828;T|0.172	0.172	strong	.	TGM1	73	.	NM_000359	exon7	c.C1146A	p.G382G	GGTCACGCCAGCA	.	PASS	Atlas-SNP
PRB1	5542	hgsc.bcm.edu	37	12	11506288	11506288	+	Missense_Mutation	SNP	T	T	C	rs140825288	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	374	6	494	5	0.0160428	0.0101215	.	.	weak	PRB1,NS,carcinoma,0,2	PRB1	33	2	NM_199353	exon4	c.A350G	p.K117R	TGAGGTTTGTTGC	.	scavenged	Atlas-SNP
C10orf129	142827	hgsc.bcm.edu	37	10	96954360	96954360	+	Missense_Mutation	SNP	T	T	A	rs11188225	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	55	137	0	0.462185	0	A|0.198;N|0.001	0.198	strong	.	C10orf129	52	.	NM_207321	exon2	c.T118A	p.C40S	TCCAGGTGCCTAG	.	PASS	Atlas-SNP
OR10T2	128360	hgsc.bcm.edu	37	1	158369064	158369064	+	Missense_Mutation	SNP	A	A	G	rs41488350	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	26	72	0	0.38806	0	A|0.905;G|0.095	0.095	strong	OR10T2,NS,carcinoma,+2,1	OR10T2	76	1	NM_001004475	exon1	c.T193C	p.F65L	GGATGAATAGAAA	.	PASS	Atlas-SNP
PRND	23627	hgsc.bcm.edu	37	20	4705274	4705274	+	Missense_Mutation	SNP	C	C	T	rs41279424	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	80	115	0	0.547945	0	C|0.985;T|0.015	0.015	strong	PRND,caecum,carcinoma,-1,1	PRND	34	1	NM_012409	exon2	c.C77T	p.T26M	TCCAGACGAGGGG	.	PASS	Atlas-SNP
RMND1	55005	hgsc.bcm.edu	37	6	151766552	151766552	+	Missense_Mutation	SNP	G	G	A	rs3734800	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	58	101	0	0.585859	0	G|0.867;A|0.133	0.133	strong	.	RMND1	32	.	NM_017909	exon2	c.C395T	p.T132M	GTTTCCGTTGATA	.	PASS	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88791458	88791458	+	Missense_Mutation	SNP	G	G	A	rs11645197	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	61	110	0	0.516949	0	G|0.827;A|0.173	0.173	strong	.	PIEZO1	79	.	NM_001142864	exon30	c.C4193T	p.P1398L	CTCCGTGGCGGGG	.	PASS	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	37	19	36349752	36349752	+	Missense_Mutation	SNP	G	G	A	rs404299	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	90	233	0	0.38961	0	G|0.863;A|0.137	0.137	strong	.	KIRREL2	170	.	NM_199180	exon4	c.G508A	p.A170T	GATGGAGCCACCT	.	PASS	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	37	11	103158278	103158278	+	Missense_Mutation	SNP	C	C	T	rs10895391	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	69	217	0	0.375	0	C|0.709;T|0.291	0.291	strong	DYNC2H1_ENST00000398093,colon,carcinoma,-1,1	DYNC2H1	246	1	NM_001080463	exon76	c.C11060T	p.A3687V	TACAGGCGCTAAG	.	PASS	Atlas-SNP
OR2H1	26716	hgsc.bcm.edu	37	6	29429732	29429732	+	Silent	SNP	T	T	C	rs61732184	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	121	231	0	0.478261	0	T|0.964;C|0.036	0.036	strong	.	OR2H1	38	.	NM_030883	exon3	c.T186C	p.S62S	CCTCTCTGACCTC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152283862	152283862	+	Missense_Mutation	SNP	G	G	C	rs58001094	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	281	136	262	1	0.483986	0.00381679	G|0.640;C|0.360	0.360	strong	FLG,brain,glioma,0,1	FLG	900	1	NM_002016	exon3	c.C3500G	p.A1167G	GGGTGTGCACGAA	.	PASS	Atlas-SNP
SI	6476	hgsc.bcm.edu	37	3	164730804	164730804	+	Silent	SNP	T	T	C	rs74648160	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	69	86	0	0.985714	0	T|0.892;C|0.108	0.108	strong	SI,NS,haematopoietic_neoplasm,-1,1	SI	500	1	NM_001041	exon34	c.A4026G	p.T1342T	ATCTATTGTTATG	.	PASS	Atlas-SNP
AMZ1	155185	hgsc.bcm.edu	37	7	2748758	2748758	+	Silent	SNP	G	G	C	rs59438885	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	70	139	0	0.454545	0	A|0.000;C|0.164;G|0.836	0.164	strong	.	AMZ1	41	.	NM_133463	exon5	c.G651C	p.S217S	GAAGTCGGGGCCC	.	PASS	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17025292	17025292	+	Missense_Mutation	SNP	G	G	A	rs706761	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	61	146	0	0.401316	0	G|0.358;A|0.642	0.642	strong	.	CPAMD8	192	.	NM_015692	exon29	c.C3944T	p.T1315I	GGGACAGTGCCGT	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291160	1291160	+	Missense_Mutation	SNP	G	G	T	rs141519544	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	50	86	1	0.403226	0.0116279	G|0.658;T|0.342	0.342	strong	TPSAB1,NS,lymphoid_neoplasm,0,2	TPSAB1	24	2	NM_003294	exon3	c.G68T	p.G23V	CCCCAGGCCAGGC	.	scavenged	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1270162	1270162	+	Missense_Mutation	SNP	G	G	A	rs1054645	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	17	14	0	1	0	G|0.269;A|0.731	0.731	strong	CACNA1H_ENST00000358590,NS,carcinoma,0,2	CACNA1H	317	2	NM_021098	exon35	c.G6230A	p.R2077H	GACAGCGCTGCGT	.	PASS	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	37	9	98231084	98231084	+	Silent	SNP	T	T	C	rs2227970	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	68	111	0	0.693878	0	T|0.987;C|0.013	0.013	strong	PTCH1_ENST00000430669,NS,carcinoma,-1,4	PTCH1	1850	4	NM_000264	exon14	c.A2199G	p.S733S	AAAAGATGAGAGT	.	PASS	Atlas-SNP
ECM2	1842	hgsc.bcm.edu	37	9	95279985	95279985	+	Silent	SNP	C	C	A	rs968040	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	51	127	0	0.46789	0	C|0.602;A|0.398	0.398	strong	.	ECM2	147	.	NM_001393	exon3	c.G465T	p.P155P	GCAGACCGGGCAG	.	PASS	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28761981	28761981	+	Missense_Mutation	SNP	G	G	C	rs6753929	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	85	178	0	0.491329	0	A|0.000;C|0.213;G|0.787	0.213	strong	.	PLB1	255	.	NM_001170585	exon11	c.G667C	p.V223L	GCATTTGTAAACC	.	PASS	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53856702	53856702	+	Missense_Mutation	SNP	G	G	A	rs200114728		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	13	111	1	0.0935252	0.00900901	.	.	weak	ZNF845,NS,carcinoma,0,6	ZNF845	101	6	NM_138374	exon4	c.G2774A	p.R925H	CCTTCCGTCACAA	.	scavenged	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44248837	44248837	+	Missense_Mutation	SNP	T	T	C	rs35643216	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	288	93	258	0	0.322917	0	T|0.857;C|0.143	0.143	strong	.	.	.	.	NM_001193466	exon2	c.A673G	p.N225D	TATTATTGCTATA	.	PASS	Atlas-SNP
TMEM171	134285	hgsc.bcm.edu	37	5	72424269	72424269	+	Silent	SNP	T	T	G	rs34728034	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	95	176	0	0.508021	0	T|0.980;G|0.020	0.020	strong	.	TMEM171	41	.	NM_173490	exon3	c.T693G	p.S231S	TGAATCTTCAGCT	.	PASS	Atlas-SNP
ZNF181	339318	hgsc.bcm.edu	37	19	35232368	35232368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	6	101	3	0.06	0.029703	.	.	none	ZNF181,NS,carcinoma,0,1	ZNF181	65	1	NM_001029997	exon4	c.G1082C	p.R361T	TTCATAGGTCATC	.	scavenged	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	12950315	12950315	+	Silent	SNP	G	G	T	rs568182	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	29	50	1	0.483333	0.02	G|0.887;T|0.113	0.113	strong	DLC1,NS,carcinoma,-1,2	DLC1	411	2	NM_182643	exon13	c.C3546A	p.R1182R	CTGCAGGCGCTGG	.	scavenged	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	37	19	7606908	7606908	+	Missense_Mutation	SNP	G	G	C	rs17854645	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	12	30	0	0.521739	0	G|0.837;C|0.163	0.163	strong	.	PNPLA6	163	.	NM_001166111	exon12	c.G1234C	p.A412P	CCCTCGGCCCCTC	.	PASS	Atlas-SNP
COQ5	84274	hgsc.bcm.edu	37	12	120966921	120966921	+	Silent	SNP	A	A	G	rs3742052	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	57	91	0	0.619565	0	A|0.748;G|0.252	0.252	strong	.	COQ5	26	.	NM_032314	exon1	c.T24C	p.A8A	CCATAGAGCACAG	.	PASS	Atlas-SNP
STAT5A	6776	hgsc.bcm.edu	37	17	40459737	40459737	+	Silent	SNP	C	C	T	rs1135669	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	36	52	0	0.5625	0	C|0.802;T|0.198	0.198	strong	.	STAT5A	49	.	NM_003152	exon16	c.C1902T	p.D634D	GTTTGACTCCCGT	.	PASS	Atlas-SNP
TCF25	22980	hgsc.bcm.edu	37	16	89965055	89965055	+	Silent	SNP	G	G	A	rs11648433	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	24	44	0	0.470588	0	G|0.932;A|0.068	0.068	strong	.	TCF25	61	.	NM_014972	exon10	c.G1113A	p.L371L	CATCCTGAGGTGA	.	PASS	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65241228	65241228	+	Silent	SNP	A	A	G	rs229592	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	86	0	1	0	A|0.516;G|0.484	0.484	strong	.	SPTB	378	.	NM_001024858	exon23	c.T4860C	p.I1620I	CATCACAATGGCG	.	PASS	Atlas-SNP
SLCO1B1	10599	hgsc.bcm.edu	37	12	21331625	21331625	+	Silent	SNP	C	C	T	rs2291075	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	87	172	0	0.455497	0	C|0.548;T|0.452	0.452	strong	SLCO1B1,NS,carcinoma,+2,1	SLCO1B1	151	1	NM_006446	exon6	c.C597T	p.F199F	TGATTTCGCTAAA	.	PASS	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	37	1	157494106	157494106	+	Silent	SNP	C	C	T	rs34273689	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	335	178	314	1	0.531343	0.00318471	C|0.902;T|0.098	0.098	strong	.	FCRL5	177	.	NM_031281	exon10	c.G2202A	p.E734E	CTGGGCCTCCAGA	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371085	240371085	+	Silent	SNP	A	A	T	rs71646826	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	15	91	3	0.114504	0.032967	A|0.836;T|0.164	0.164	strong	FMN2,NS,carcinoma,+1,1	FMN2	451	1	NM_020066	exon5	c.A2973T	p.P991P	TCCCCCACTTCCC	.	scavenged	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	37	17	39041309	39041309	+	Silent	SNP	G	G	A	rs17567558	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	28	59	0	0.394366	0	G|0.922;A|0.078	0.078	strong	.	KRT20	38	.	NM_019010	exon1	c.C129T	p.G43G	GCGGATGCCCCGG	.	PASS	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	37	12	125467158	125467158	+	Missense_Mutation	SNP	C	C	T	rs11558556	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	40	81	0	0.416667	0	T|0.288;G|0.120;C|0.514;A|0.078	0.288	strong	.	DHX37	114	.	NM_032656	exon3	c.G288A	p.M96I	CTGTAGCATCTCT	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037626	33037626	+	Silent	SNP	C	C	G	rs1042174	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	33	143	0	0.336735	0	C|0.687;G|0.313	0.313	strong	.	HLA-DPA1	20	.	NM_033554	exon2	c.G138C	p.T46T	TCTATGCGTCTGT	.	PASS	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	37	4	20552510	20552510	+	Silent	SNP	A	A	C	rs17542486	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	36	95	0	0.423529	0	A|0.917;C|0.083	0.083	strong	.	SLIT2	290	.	NM_004787	exon25	c.A2550C	p.A850A	TTCTGCATTATCA	.	PASS	Atlas-SNP
SRRT	51593	hgsc.bcm.edu	37	7	100486110	100486110	+	Silent	SNP	C	C	T	rs11171	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	274	137	240	0	0.5	0	C|0.905;T|0.095	0.095	strong	.	SRRT	108	.	NM_015908	exon20	c.C2571T	p.D857D	TGGAGACCCAAGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152284854	152284854	+	Silent	SNP	A	A	G	rs3120653	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	362	180	341	0	0.497238	0	A|0.687;G|0.313	0.313	strong	FLG,right_upper_lobe,carcinoma,-2,1	FLG	900	1	NM_002016	exon3	c.T2508C	p.D836D	CTGACCATCTTGG	.	PASS	Atlas-SNP
FAM86C1	55199	hgsc.bcm.edu	37	11	71504464	71504464	+	Silent	SNP	C	C	T	rs139287982	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	49	136	0	0.30625	0	C|0.959;T|0.041	0.041	strong	.	FAM86C1	27	.	NM_018172	exon3	c.C198T	p.Y66Y	GCTGTACGAGGTG	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509572	195509572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	249	8	236	0	0.0321285	0	.	.	none	MUC4_ENST00000463781,trunk,malignant_melanoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C8879T	p.S2960F	GGAAGAGAGGTGG	.	scavenged	Atlas-SNP
CTNS	1497	hgsc.bcm.edu	37	17	3563963	3563963	+	Missense_Mutation	SNP	C	C	G	rs2873624	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	281	140	248	0	0.498221	0	C|0.789;G|0.211	0.211	strong	.	CTNS	42	.	NM_001031681	exon13	c.C1138G	p.P380A	TGGGCACCAAGCT	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76433899	76433899	+	Missense_Mutation	SNP	G	G	A	rs61742072	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	57	109	0	0.548077	0	G|0.865;A|0.135	0.135	strong	DNAH17,NS,carcinoma,+1,1	DNAH17	347	1	NM_173628	exon74	c.C11857T	p.H3953Y	TGTAGTGCTCCAG	.	PASS	Atlas-SNP
RAB3GAP1	22930	hgsc.bcm.edu	37	2	135893372	135893372	+	Missense_Mutation	SNP	A	A	G	rs10445686	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	144	162	0	0.993103	0	A|0.834;G|0.166	0.166	strong	.	RAB3GAP1	87	.	NM_001172435	exon17	c.A1793G	p.N598S	AAGGAAATGGACA	.	PASS	Atlas-SNP
CEACAM18	729767	hgsc.bcm.edu	37	19	51983673	51983673	+	Missense_Mutation	SNP	G	G	A	rs61743859	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	43	106	0	0.447917	0	G|0.806;A|0.194	0.194	strong	.	CEACAM18	96	.	NM_001080405	exon3	c.G322A	p.V108M	ACTGTCGTGGCCC	.	PASS	Atlas-SNP
MAP7D1	55700	hgsc.bcm.edu	37	1	36644874	36644874	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	75	125	0	0.543478	0	.	.	none	.	MAP7D1	62	.	NM_018067	exon13	c.G2142A	p.E714E	GGAGGAGATCATG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179575511	179575511	+	Missense_Mutation	SNP	C	C	T	rs72648998	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	77	208	0	0.447674	0	C|0.966;T|0.034	0.034	strong	TTN_ENST00000342992,colon,carcinoma,-1,1	TTN	18412	1	NM_001267550	exon98	c.G28313A	p.R9438Q	CCACTTCGTATTT	.	PASS	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	37	7	107626770	107626770	+	Silent	SNP	G	G	A	rs25659	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	54	109	0	0.442623	0	G|0.898;A|0.102	0.102	strong	.	LAMB1	185	.	NM_002291	exon6	c.C462T	p.S154S	AAAGTCGGACGAT	.	PASS	Atlas-SNP
BBOX1	8424	hgsc.bcm.edu	37	11	27114788	27114788	+	Silent	SNP	C	C	T	rs3183973	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	110	108	0	1	0	C|0.675;T|0.325	0.325	strong	BBOX1,NS,carcinoma,0,1	BBOX1	46	1	NM_003986	exon5	c.C408T	p.H136H	TGAACACGCATAC	.	PASS	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	37	2	18768850	18768850	+	Silent	SNP	A	A	G	rs16985306	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	71	89	0	0.986111	0	A|0.677;G|0.323	0.323	strong	.	NT5C1B	72	.	NM_001199088	exon2	c.T39C	p.P13P	CATTCCAGGCTCA	.	PASS	Atlas-SNP
DENND2C	163259	hgsc.bcm.edu	37	1	115168600	115168600	+	Missense_Mutation	SNP	A	A	T	rs7541738	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	25	53	0	0.416667	0	A|0.824;T|0.176	0.176	strong	.	DENND2C	105	.	NM_001256404	exon4	c.T6A	p.D2E	ACCAACATCCATG	.	PASS	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	37	10	128019025	128019025	+	Missense_Mutation	SNP	C	C	G	rs3740199	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	100	213	0	0.485437	0	A|0.000;C|0.444;G|0.555;N|0.001	0.555	strong	ADAM12_ENST00000368679,NS,carcinoma,0,3	ADAM12	388	3	NM_021641	exon2	c.G142C	p.G48R	CACTCCCAACAGA	.	PASS	Atlas-SNP
USP17L2	377630	hgsc.bcm.edu	37	8	11994957	11994957	+	Missense_Mutation	SNP	T	T	C	rs77946896		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	13	28	0	0.419355	0	.	.	weak	.	USP17L2	47	.	NM_201402	exon1	c.A1313G	p.K438R	GGGAATTTCCAGT	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114454544	114454544	+	Missense_Mutation	SNP	T	T	C	rs7869279	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	54	127	0	0.418605	0	T|0.528;C|0.472	0.472	strong	.	C9orf84	207	.	NM_173521	exon25	c.A3521G	p.E1174G	GAGATTTCTTTTA	.	PASS	Atlas-SNP
SLC7A4	6545	hgsc.bcm.edu	37	22	21386019	21386019	+	Missense_Mutation	SNP	G	G	A	rs2072550	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	97	97	0	1	0	G|0.786;A|0.214	0.214	strong	SLC7A4,NS,carcinoma,0,1	SLC7A4	50	1	NM_004173	exon2	c.C83T	p.T28I	TCCATGGTGGAGT	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12409263	12409263	+	Missense_Mutation	SNP	C	C	A	rs17165906	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	116	196	0	0.544601	0	C|0.841;A|0.159	0.159	strong	.	VWDE	123	.	NM_001135924	exon12	c.G2669T	p.C890F	TTGGGGCATTTTA	.	PASS	Atlas-SNP
ADAMTS15	170689	hgsc.bcm.edu	37	11	130339312	130339312	+	Silent	SNP	T	T	C	rs731446	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	35	52	0	0.448718	0	T|0.365;C|0.635	0.635	strong	.	ADAMTS15	103	.	NM_139055	exon5	c.T1698C	p.N566N	CTGCAATCTGGAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179429612	179429612	+	Missense_Mutation	SNP	A	A	G	rs186273940	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	73	96	0	0.598361	0	A|0.999;G|0.001	0.001	strong	.	TTN	18412	.	NM_001267550	exon326	c.T81247C	p.S27083P	AGATTGATGTCAC	.	PASS	Atlas-SNP
KPTN	11133	hgsc.bcm.edu	37	19	47987230	47987230	+	Missense_Mutation	SNP	C	C	T	rs142867197	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	22	25	0	0.5	0	C|0.998;T|0.002	0.002	strong	.	KPTN	34	.	NM_007059	exon1	c.G188A	p.R63Q	ACTGGCCGGATTT	.	PASS	Atlas-SNP
DPYSL4	10570	hgsc.bcm.edu	37	10	134013906	134013906	+	Silent	SNP	C	C	T	rs56326856	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	65	142	0	0.53719	0	C|0.833;T|0.167	0.167	strong	DPYSL4,caecum,carcinoma,+1,8	DPYSL4	91	8	NM_006426	exon9	c.C858T	p.D286D	CACCGACGGTTCA	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	37	10	323283	323283	+	Silent	SNP	A	A	G	rs3740304	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	36	61	0	0.537313	0	A|0.732;G|0.268	0.268	strong	.	DIP2C	195	.	NM_014974	exon37	c.T4653C	p.Y1551Y	GGCCACATAGATG	.	PASS	Atlas-SNP
SBK2	646643	hgsc.bcm.edu	37	19	56042540	56042540	+	Silent	SNP	G	G	A	rs45520537	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	26	50	0	0.541667	0	G|0.942;A|0.058	0.058	strong	.	SBK2	26	.	NM_001101401	exon3	c.C426T	p.H142H	GTCCCCGTGCAGG	.	PASS	Atlas-SNP
KRTAP12-2	353323	hgsc.bcm.edu	37	21	46086377	46086377	+	Missense_Mutation	SNP	A	A	G	rs2838622	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	340	340	334	2	1	0.00598802	A|0.429;G|0.571	0.571	strong	.	KRTAP12-2	10	.	NM_181684	exon1	c.T427C	p.S143P	AGGAAGAGATACT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214811244	214811244	+	Missense_Mutation	SNP	C	C	G	rs2070065	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	104	243	0	0.45614	0	C|0.715;G|0.285	0.285	strong	.	CENPF	321	.	NM_016343	exon11	c.C1482G	p.H494Q	GAGTCACTCTGAG	.	PASS	Atlas-SNP
CCDC7	221016	hgsc.bcm.edu	37	10	32745262	32745262	+	Silent	SNP	T	T	C	rs7897978	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	73	85	0	0.570312	0	T|0.858;C|0.142	0.142	strong	.	CCDC7	47	.	NM_145023	exon4	c.T456C	p.N152N	ACAAAATGTATGT	.	PASS	Atlas-SNP
APOBEC3H	164668	hgsc.bcm.edu	37	22	39498038	39498038	+	Missense_Mutation	SNP	G	G	C	rs139302	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	22	42	0	0.52381	0	G|0.460;C|0.540	0.540	strong	.	APOBEC3H	28	.	NM_001166003	exon4	c.G534C	p.E178D	GCTTGAGAGGATA	.	PASS	Atlas-SNP
STON1	11037	hgsc.bcm.edu	37	2	48808898	48808898	+	Silent	SNP	C	C	T	rs3749145	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	67	96	0	0.540323	0	C|0.681;T|0.319	0.319	strong	.	STON1	100	.	NM_001198595	exon3	c.C1126T	p.L376L	CAGATGCTGAAGT	.	PASS	Atlas-SNP
LHX3	8022	hgsc.bcm.edu	37	9	139092571	139092571	+	Silent	SNP	C	C	T	rs33998096	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	68	127	0	0.475524	0	C|0.990;T|0.010	0.010	strong	.	LHX3	23	.	NM_014564	exon2	c.G123A	p.Q41Q	GATGTGCTGGTCA	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	37	2	228128568	228128568	+	Missense_Mutation	SNP	G	G	A	rs34505188	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	72	145	0	0.541353	0	G|0.907;A|0.093	0.093	strong	COL4A3_ENST00000328380,NS,carcinoma,+1,2	COL4A3	293	2	NM_000091	exon21	c.G1223A	p.R408H	GAGGCCGCCCAGG	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537268	88537268	+	Missense_Mutation	SNP	G	G	A	rs202025088	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	87	183	0	0.530488	0	.	.	weak	.	DSPP	174	.	NM_014208	exon5	c.G3454A	p.D1152N	AGCAGCGACAGCA	.	PASS	Atlas-SNP
DHRS4	10901	hgsc.bcm.edu	37	14	24423090	24423090	+	Silent	SNP	A	A	G	rs2273944	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	47	67	0	0.618421	0	A|0.694;G|0.306	0.306	strong	.	DHRS4	22	.	NM_021004	exon1	c.A93G	p.A31A	GCTCGCAAATAAG	.	PASS	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225719693	225719693	+	Silent	SNP	G	G	A	rs16866236	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	55	101	0	0.509259	0	G|0.922;A|0.078	0.078	strong	.	DOCK10	308	.	NM_014689	exon16	c.C1875T	p.P625P	CTCCAAGGGAACG	.	PASS	Atlas-SNP
DNAJA1	3301	hgsc.bcm.edu	37	9	33026572	33026572	+	Silent	SNP	T	T	C	rs20583	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	103	100	0	0.990385	0	A|0.004;C|0.607	0.607	strong	.	DNAJA1	26	.	NM_001539	exon2	c.T90C	p.A30A	ACTGGCTTTGAAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179543217	179543217	+	Silent	SNP	C	C	T	rs35112591	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	72	149	2	0.537313	0.0134228	C|0.788;T|0.212	0.212	strong	TTN_ENST00000356127,NS,carcinoma,0,1	TTN	18412	1	NM_001267550	exon144	c.G33834A	p.E11278E	GGGTACCTCTGGC	.	scavenged	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	37	19	22575784	22575784	+	Splice_Site	SNP	C	C	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	12	35	0	0.218182	0	.	.	none	.	ZNF98	230	.	NM_001098626	exon5	c.254-1G>T	.	ATACAACTGAAAG	.	PASS	Atlas-SNP
TARS	6897	hgsc.bcm.edu	37	5	33461355	33461355	+	Silent	SNP	G	G	A	rs2270905	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	140	0	1	0	G|0.816;A|0.184	0.184	strong	TARS,NS,carcinoma,+1,1	TARS	66	1	NM_001258438	exon14	c.G1605A	p.P535P	TCGCCCGGAAAAA	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55578987	55578987	+	Silent	SNP	T	T	C	rs67727364	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	41	92	0	0.450549	0	T|0.898;C|0.102	0.102	strong	OR5L1,NS,carcinoma,0,1	OR5L1	145	1	NM_001004738	exon1	c.T45C	p.L15L	TCTCCTTGGACTA	.	PASS	Atlas-SNP
TTI1	9675	hgsc.bcm.edu	37	20	36624780	36624780	+	Missense_Mutation	SNP	C	C	T	rs34900517	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	18	46	0	0.461538	0	C|0.975;T|0.025	0.025	strong	.	TTI1	104	.	NM_014657	exon8	c.G3083A	p.R1028K	TACCTCCTGGCAG	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16918997	16918997	+	Missense_Mutation	SNP	T	T	C	rs1801240	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	58	92	0	0.563107	0	T|0.878;C|0.122	0.122	strong	.	CUBN	515	.	NM_001081	exon57	c.A9005G	p.E3002G	GGCATCTCATCCC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9060059	9060059	+	Missense_Mutation	SNP	A	A	C	rs12977368	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	77	132	0	0.478261	0	A|0.794;C|0.206	0.206	strong	.	MUC16	4315	.	NM_024690	exon3	c.T27387G	p.D9129E	TGGCACATCTCCA	.	PASS	Atlas-SNP
CDK4	1019	hgsc.bcm.edu	37	12	58142983	58142983	+	Silent	SNP	C	C	T	rs201744062	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	293	3	289	1	0.0102389	0.00346021	C|1.000;T|0.000	0.000	strong	CDK4,caecum,carcinoma,-2,1	CDK4	36	1	NM_000075	exon7	c.G801A	p.S267S	TGCTCCCGACTCC	.	scavenged	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53070145	53070145	+	Silent	SNP	G	G	A	rs936958	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	191	172	0	0.989637	0	G|0.554;A|0.446	0.446	strong	KRT1,NS,carcinoma,-2,1	KRT1	110	1	NM_006121	exon7	c.C1389T	p.R463R	GTAGTCGCGCAGC	.	PASS	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	37	5	102520400	102520400	+	Silent	SNP	A	A	C	rs26821	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	38	77	0	0.535211	0	A|0.660;C|0.340	0.340	strong	.	PPIP5K2	98	.	NM_015216	exon25	c.A3124C	p.R1042R	TACCTGAGAACAC	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72993622	72993622	+	Silent	SNP	C	C	T	rs62053190	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	67	126	0	0.563025	0	C|0.941;T|0.059	0.059	strong	ZFHX3,NS,carcinoma,0,2	ZFHX3	404	2	NM_006885	exon2	c.G423A	p.A141A	AATGTACGCGGAG	.	PASS	Atlas-SNP
ZFP112	7771	hgsc.bcm.edu	37	19	44831989	44831989	+	Missense_Mutation	SNP	T	T	G	rs2609881	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	225	211	0	0.986842	0	T|0.766;G|0.234	0.234	strong	.	ZFP112	219	.	NM_001083335	exon5	c.A2339C	p.E780A	CACACCTCACATT	.	PASS	Atlas-SNP
WDR45B	56270	hgsc.bcm.edu	37	17	80579609	80579609	+	Missense_Mutation	SNP	T	T	C	rs74895287	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	54	87	0	0.606742	0	T|0.977;C|0.023	0.023	strong	.	.	.	.	NM_019613	exon6	c.A494G	p.H165R	TGCACATGGCCCG	.	PASS	Atlas-SNP
GTPBP4	23560	hgsc.bcm.edu	37	10	1060218	1060218	+	Missense_Mutation	SNP	G	G	A	rs3207775	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	66	149	0	0.44898	0	G|0.917;A|0.083	0.083	strong	.	GTPBP4	57	.	NM_012341	exon15	c.G1574A	p.R525H	AGATGCGTAGTCT	.	PASS	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	37	13	111156250	111156250	+	Missense_Mutation	SNP	G	G	A	rs45520539	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	88	109	0	0.567742	0	G|0.971;A|0.029	0.029	strong	COL4A2,colon,carcinoma,-1,1	COL4A2	178	1	NM_001846	exon44	c.G4195A	p.V1399I	ATTGCCGTCCAAC	.	PASS	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	37	1	201052310	201052310	+	Missense_Mutation	SNP	A	A	T	rs12742169	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	48	115	0	0.48	0	A|0.769;T|0.231	0.231	strong	.	CACNA1S	249	.	NM_000069	exon10	c.T1373A	p.L458H	AGCCAGAGAGGCT	.	PASS	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	37	5	60628414	60628414	+	Silent	SNP	G	G	T	rs111274143	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	56	100	0	0.538462	0	G|0.894;T|0.106	0.106	strong	.	ZSWIM6	51	.	NM_020928	exon1	c.G315T	p.V105V	GCCGGTGCAGCGC	.	PASS	Atlas-SNP
ZPLD1	131368	hgsc.bcm.edu	37	3	102157365	102157365	+	Missense_Mutation	SNP	A	A	T	rs6784362	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	149	156	0	0.993333	0	A|0.881;N|0.000	.	strong	ZPLD1,NS,carcinoma,-2,1	ZPLD1	82	1	NM_175056	exon2	c.A82T	p.I28F	CTAACAATTAGAG	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39464046	39464046	+	Missense_Mutation	SNP	G	G	C	rs2074286	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	124	109	1	0.992	0.00917431	G|0.675;C|0.325	0.325	strong	.	KRTAP16-1	12	.	NM_001146182	exon1	c.C1460G	p.A487G	CAGGGAGCCTCTT	.	PASS	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	37	2	26502875	26502875	+	Silent	SNP	T	T	C	rs1056389	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	123	265	0	0.450549	0	T|0.834;C|0.166	0.166	strong	.	HADHB	50	.	NM_000183	exon10	c.T825C	p.V275V	TACAGTTACCAAA	.	PASS	Atlas-SNP
OR7A10	390892	hgsc.bcm.edu	37	19	14951898	14951898	+	Silent	SNP	G	G	T	rs3752195	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	38	75	0	0.436782	0	G|0.787;T|0.213	0.213	strong	OR7A10,NS,carcinoma,-2,1	OR7A10	33	1	NM_001005190	exon1	c.C792A	p.A264A	GTGGGTGGCAGCA	.	PASS	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	37	5	35646784	35646784	+	Missense_Mutation	SNP	A	A	G	rs80010329	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	127	206	1	0.531381	0.00485437	A|0.995;G|0.005	0.005	strong	.	SPEF2	324	.	NM_024867	exon5	c.A601G	p.R201G	AACAGAAGACGAC	.	PASS	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	37	2	1652660	1652660	+	Silent	SNP	G	G	A	rs3811613	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	13	22	0	0.65	0	G|0.761;A|0.239	0.239	strong	.	PXDN	255	.	NM_012293	exon17	c.C2892T	p.N964N	GCTCTCGTTCTCG	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152325866	152325866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	310	5	334	0	0.016129	0	.	.	none	FLG2,NS,carcinoma,+1,1	FLG2	431	1	NM_001014342	exon3	c.G4396A	p.G1466R	TAGTTCCGTGTCT	.	scavenged	Atlas-SNP
CCDC158	339965	hgsc.bcm.edu	37	4	77255210	77255210	+	Silent	SNP	C	C	T	rs113022439	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	93	171	0	0.525424	0	C|0.984;T|0.016	0.016	strong	.	CCDC158	114	.	NM_001042784	exon18	c.G2775A	p.K925K	CTCTGTCTTGCTC	.	PASS	Atlas-SNP
MCC	4163	hgsc.bcm.edu	37	5	112406862	112406862	+	Silent	SNP	G	G	A	rs2227950	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	189	199	0	0.984375	0	T|0.062;G|0.554;C|0.125;A|0.259	0.259	strong	MCC_ENST00000408903,colon,carcinoma,-1,4	MCC	234	4	NM_001085377	exon12	c.C1854T	p.A618A	CCTCTCGGCATTG	.	PASS	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	37	9	101748356	101748356	+	Missense_Mutation	SNP	A	A	G	rs2075663	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	35	62	0	0.530303	0	A|0.472;C|0.000;G|0.528	0.528	strong	.	COL15A1	211	.	NM_001855	exon3	c.A610G	p.M204V	ATCTTCATGGGCA	.	PASS	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	37	4	90169925	90169925	+	Missense_Mutation	SNP	A	A	G	rs7653897	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	60	112	0	0.413793	0	A|0.398;G|0.602	0.602	strong	.	GPRIN3	90	.	NM_198281	exon2	c.T1337C	p.V446A	TCCCTCACTGGAG	.	PASS	Atlas-SNP
OR5I1	10798	hgsc.bcm.edu	37	11	55703247	55703247	+	Silent	SNP	G	G	A	rs4465383	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	77	123	0	0.509934	0	G|0.817;A|0.183	0.183	strong	.	OR5I1	110	.	NM_006637	exon1	c.C630T	p.I210I	ACAAATGATTTCC	.	PASS	Atlas-SNP
LPAR2	9170	hgsc.bcm.edu	37	19	19737992	19737992	+	Silent	SNP	G	G	A	rs150741448	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	29	59	0	0.460317	0	G|0.997;A|0.003	0.003	strong	.	LPAR2	28	.	NM_004720	exon2	c.C102T	p.V34V	CACCACGACCACA	.	PASS	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21200089	21200089	+	Missense_Mutation	SNP	A	A	G	rs11045681	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	76	131	0	0.45509	0	A|0.896;G|0.104	0.104	strong	.	SLCO1B7	85	.	NM_001009562	exon7	c.A932G	p.Y311C	TTACTTATATCAT	.	PASS	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	37	5	109181682	109181682	+	Silent	SNP	A	A	T	rs3186988	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	85	222	0	0.440415	0	A|0.293;T|0.707	0.707	strong	.	MAN2A1	136	.	NM_002372	exon18	c.A2817T	p.S939S	TCAGTCATTAGGG	.	PASS	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	37	2	85570849	85570849	+	Missense_Mutation	SNP	C	C	T	rs4832168	bycluster;byfrequency;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	310	39	235	0	0.125806	0	C|0.990;T|0.010	0.010	strong	.	RETSAT	56	.	NM_017750	exon10	c.G1606A	p.G536R	CAGCCCCGTAGCA	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790951	4790951	+	Missense_Mutation	SNP	A	A	G	rs11033801	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	42	81	0	0.567568	0	A|0.702;G|0.298	0.298	strong	.	OR51F1	60	.	NM_001004752	exon1	c.T197C	p.F66S	AGCCTGAAGAGGA	.	PASS	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7759679	7759679	+	Silent	SNP	G	G	A	rs35076349	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	72	74	0	0.521739	0	G|0.952;A|0.048	0.048	strong	.	ITIH2	144	.	NM_002216	exon6	c.G558A	p.V186V	GGAGGTGAAGTGG	.	PASS	Atlas-SNP
TNIP3	79931	hgsc.bcm.edu	37	4	122075739	122075739	+	Silent	SNP	T	T	C	rs17051298	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	46	119	0	0.386555	0	T|0.924;C|0.076	0.076	strong	.	TNIP3	58	.	NM_001244764	exon8	c.A690G	p.E230E	GTAATGTTCCTTT	.	PASS	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	37	7	38785204	38785204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	44	89	0	0.435644	0	.	.	none	.	VPS41	102	.	NM_014396	exon23	c.A1936G	p.I646V	GACAGATCTCAAG	.	PASS	Atlas-SNP
EXTL1	2134	hgsc.bcm.edu	37	1	26357667	26357667	+	Silent	SNP	G	G	A	rs11247848	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	75	106	0	0.524476	0	G|0.819;A|0.181	0.181	strong	EXTL1,NS,carcinoma,0,1	EXTL1	61	1	NM_004455	exon5	c.G1146A	p.L382L	CTCACTGCTGTGG	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291831	1291831	+	Missense_Mutation	SNP	G	G	C	rs202156919	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	402	128	538	6	0.318408	0.0111524	.	.	strong	TPSAB1,NS,carcinoid-endocrine_tumour,0,1	TPSAB1	24	1	NM_003294	exon5	c.G503C	p.R168P	CAGAGCGCCTCCC	.	scavenged	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	37	13	25378476	25378476	+	Missense_Mutation	SNP	A	A	G	rs9511451	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	49	96	0	0.457944	0	A|0.776;G|0.224	0.224	strong	RNF17_ENST00000255324,NS,carcinoma,+1,1	RNF17	259	1	NM_001184993	exon15	c.A2000G	p.H667R	CTTTACACTATCA	.	PASS	Atlas-SNP
RIC3	79608	hgsc.bcm.edu	37	11	8159884	8159884	+	Missense_Mutation	SNP	C	C	G	rs80168649	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	50	106	0	0.442478	0	C|0.992;G|0.008	0.008	strong	.	RIC3	42	.	NM_001206672	exon3	c.G362C	p.G121A	GTTTTCCCCTTTG	.	PASS	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	37	17	35956391	35956391	+	Missense_Mutation	SNP	G	G	C	rs12944821	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	51	97	0	0.46789	0	G|0.825;C|0.175	0.175	strong	SYNRG,rectum,carcinoma,0,1	SYNRG	101	1	NM_001163544	exon3	c.C119G	p.A40G	AGGCCTGCTGAAA	.	PASS	Atlas-SNP
ABCD4	5826	hgsc.bcm.edu	37	14	74759066	74759066	+	Missense_Mutation	SNP	G	G	A	rs147795328	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	34	61	0	0.492754	0	G|0.999;A|0.001	0.001	strong	.	ABCD4	54	.	NM_005050	exon11	c.C1042T	p.R348W	TCTCCCGAAGCTG	.	PASS	Atlas-SNP
CRISP1	167	hgsc.bcm.edu	37	6	49814379	49814379	+	Missense_Mutation	SNP	T	T	C	rs3209304	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	81	148	0	0.47093	0	T|0.762;G|0.006;C|0.078;A|0.154	0.078	strong	.	CRISP1	45	.	NM_001205220	exon5	c.A289G	p.T97A	AAAAGGTATCTGA	.	PASS	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	37	X	117032973	117032973	+	Silent	SNP	C	C	G	rs6645983	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	120	115	0	0.983607	0	C|0.757;0|0.013	.	strong	.	KLHL13	87	.	NM_001168299	exon8	c.G1875C	p.L625L	TTCTGGCAGATCA	.	PASS	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	37	7	24758818	24758818	+	Missense_Mutation	SNP	G	G	T	rs754554	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	69	0	0.464286	0	G|0.798;T|0.202	0.202	strong	DFNA5,colon,carcinoma,+1,1	DFNA5	51	1	NM_001127453	exon4	c.C424A	p.P142T	GCACAGGGTTTCT	.	PASS	Atlas-SNP
RAB38	23682	hgsc.bcm.edu	37	11	87908502	87908502	+	Silent	SNP	G	G	A	rs36074402	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	64	94	0	0.5	0	G|0.991;A|0.009	0.009	strong	.	RAB38	20	.	NM_022337	exon1	c.C51T	p.D17D	GCCCAGGTCGCCA	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982832	57982832	+	Missense_Mutation	SNP	T	T	A	rs61739243	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	46	169	0	0.359375	0	T|0.703;A|0.297	0.297	strong	OR1S1,NS,carcinoma,0,1	OR1S1	139	1	NM_001004458	exon1	c.T616A	p.L206M	GATACATTGATCA	.	PASS	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	37	3	31725316	31725316	+	Silent	SNP	G	G	A	rs2278959	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	66	134	0	0.437086	0	G|0.754;A|0.246	0.246	strong	.	OSBPL10	160	.	NM_017784	exon8	c.C1536T	p.H512H	GTGTTCGTGACAG	.	PASS	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	37	5	123984763	123984763	+	Silent	SNP	C	C	T	rs7708070	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	57	124	0	0.467213	0	C|0.228;T|0.772	0.772	strong	.	ZNF608	117	.	NM_020747	exon4	c.G1314A	p.A438A	AGACCTCGCTCTC	.	PASS	Atlas-SNP
USP19	10869	hgsc.bcm.edu	37	3	49148980	49148980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	16	49	0	0.390244	0	.	.	none	.	USP19	158	.	NM_001199161	exon21	c.T3170C	p.I1057T	ACCTCAATGGGCC	.	PASS	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	37	13	111160304	111160304	+	Silent	SNP	G	G	A	rs391859	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	64	88	0	0.52459	0	G|0.890;A|0.110	0.110	strong	.	COL4A2	178	.	NM_001846	exon47	c.G4617A	p.A1539A	CCTGGCGCGGTTC	.	PASS	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	37	6	15513482	15513482	+	Silent	SNP	G	G	A	rs2235258	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	71	0	1	0	G|0.410;A|0.590	0.590	strong	JARID2,NS,carcinoma,0,1	JARID2	135	1	NM_004973	exon16	c.G3279A	p.L1093L	AGAGCTGCGGCAG	.	PASS	Atlas-SNP
CCDC88B	283234	hgsc.bcm.edu	37	11	64111738	64111738	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	2	89	0	0.0196078	0	.	.	none	CCDC88B,NS,carcinoma,+1,1	CCDC88B	89	1	NM_032251	exon14	c.C1725T	p.S575S	CTGGTCCCCGCAA	.	scavenged	Atlas-SNP
CCDC86	79080	hgsc.bcm.edu	37	11	60610065	60610065	+	Silent	SNP	G	G	A	rs2074420	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	45	79	1	0.535714	0.0126582	G|0.725;A|0.275	0.275	strong	CCDC86,NS,carcinoma,0,1	CCDC86	24	1	NM_024098	exon1	c.G468A	p.P156P	ACCGCCGGTCCCA	.	scavenged	Atlas-SNP
AGGF1	55109	hgsc.bcm.edu	37	5	76342447	76342447	+	Silent	SNP	T	T	C	rs61736982	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	59	122	0	0.483607	0	T|0.998;C|0.002	0.002	strong	.	AGGF1	71	.	NM_018046	exon6	c.T1146C	p.Y382Y	TAGTTATGACGAA	.	PASS	Atlas-SNP
TYW1	55253	hgsc.bcm.edu	37	7	66660242	66660242	+	Missense_Mutation	SNP	A	A	G	rs71563185		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	51	200	0	0.31677	0	A|0.500;G|0.500	0.500	weak	TYW1,NS,carcinoma,0,1	TYW1	71	1	NM_018264	exon15	c.A1895G	p.H632R	TTGTCCACGAGTT	.	PASS	Atlas-SNP
IL17F	112744	hgsc.bcm.edu	37	6	52101739	52101739	+	Missense_Mutation	SNP	T	T	C	rs763780	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	32	72	0	0.484848	0	A|0.012;C|0.071	0.071	strong	.	IL17F	28	.	NM_052872	exon3	c.A482G	p.H161R	TGCACATGGTGGA	.	PASS	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982228	240982228	+	Missense_Mutation	SNP	C	C	T	rs10439373	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	19	162	0	0.678571	0	C|0.491;T|0.509	0.509	strong	.	PRR21	53	.	NM_001080835	exon1	c.G172A	p.G58S	AAGGGCCGTGGGT	.	PASS	Atlas-SNP
APOC4	346	hgsc.bcm.edu	37	19	45448036	45448036	+	Missense_Mutation	SNP	T	T	C	rs1132899	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	42	75	0	0.552632	0	T|0.387;C|0.613	0.613	strong	.	APOC4	6	.	NM_001646	exon2	c.T107C	p.L36P	GAACCCTGAGCCC	.	PASS	Atlas-SNP
SLCO1B1	10599	hgsc.bcm.edu	37	12	21377717	21377717	+	Silent	SNP	C	C	G	rs143812591		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	42	82	0	0.506024	0	C|1.000;G|0.000	0.000	weak	.	SLCO1B1	151	.	NM_006446	exon14	c.C1809G	p.S603S	GTGGTCCACCAAC	.	PASS	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	37	12	123810873	123810873	+	Silent	SNP	G	G	A	rs61388686	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	79	79	0	0.975309	0	G|0.483;A|0.517	0.517	strong	.	SBNO1	138	.	NM_001167856	exon13	c.C1701T	p.I567I	TCTGGCGATGACC	.	PASS	Atlas-SNP
GPR20	2843	hgsc.bcm.edu	37	8	142367246	142367246	+	Missense_Mutation	SNP	G	G	A	rs36092215	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	26	53	0	0.541667	0	G|0.904;A|0.096	0.096	strong	.	GPR20	43	.	NM_005293	exon2	c.C778T	p.R260C	CTTGGCGGGCGTG	.	PASS	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	37	3	42251329	42251329	+	Silent	SNP	C	C	T	rs2290133	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	39	88	0	0.493671	0	C|0.681;T|0.319	0.319	strong	.	TRAK1	188	.	NM_001265608	exon14	c.C1815T	p.P605P	CCGGCCCGGTGTG	.	PASS	Atlas-SNP
PER3	8863	hgsc.bcm.edu	37	1	7887579	7887579	+	Missense_Mutation	SNP	C	C	G	rs228697	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	124	250	1	0.518828	0.004	C|0.925;G|0.075	0.075	strong	.	PER3	95	.	NM_016831	exon17	c.C2566G	p.P856A	GACCCCCCTGTCT	.	PASS	Atlas-SNP
C16orf3	750	hgsc.bcm.edu	37	16	90095561	90095561	+	Missense_Mutation	SNP	C	C	T	rs3785183	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	70	118	1	0.35	0.00847458	C|0.676;T|0.324	0.324	strong	C16orf3,NS,carcinoma,0,1	C16orf3	14	1	NM_001214	exon1	c.G190A	p.V64I	AGCCTACGGGGCA	.	scavenged	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123846860	123846860	+	Silent	SNP	C	C	T	rs11599291	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	59	89	1	0.567308	0.011236	C|0.767;T|0.233	0.233	strong	TACC2,colon,carcinoma,0,1	TACC2	271	1	NM_206862	exon4	c.C4845T	p.P1615P	TGGTCCCGGGGAC	.	scavenged	Atlas-SNP
CSNK1G2	1455	hgsc.bcm.edu	37	19	1979386	1979386	+	Silent	SNP	C	C	T	rs11550450	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	15	50	0	0.333333	0	C|0.820;T|0.180	0.180	strong	.	CSNK1G2	28	.	NM_001319	exon8	c.C837T	p.L279L	GGTGCTCTGCGAG	.	PASS	Atlas-SNP
CPB2	1361	hgsc.bcm.edu	37	13	46648094	46648094	+	Missense_Mutation	SNP	C	C	T	rs3742264	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	28	60	0	0.466667	0	C|0.653;T|0.347	0.347	strong	.	CPB2	60	.	NM_001872	exon6	c.G505A	p.A169T	TGGCTGCTTGTTC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179406191	179406191	+	Missense_Mutation	SNP	C	C	T	rs3731749	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	110	266	0	0.436508	0	C|0.822;T|0.178	0.178	strong	.	TTN	18412	.	NM_001267550	exon350	c.G97613A	p.R32538H	TCTTTGCGCTCCA	.	PASS	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	37	3	182897920	182897920	+	Missense_Mutation	SNP	A	A	G	rs35070271	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	60	117	0	0.521739	0	A|0.833;G|0.167	0.167	strong	.	MCF2L2	164	.	NM_015078	exon28	c.T3044C	p.M1015T	GTGTCCATGGAGC	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244167	244167	+	Silent	SNP	C	C	T	rs1128320	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	79	141	0	0.9875	0	C|0.207;T|0.793	0.793	strong	PSMD13_ENST00000431206,colon,carcinoma,0,2	PSMD13	53	2	NM_175932	exon2	c.C222T	p.N74N	GGTGAACCCTTTG	.	PASS	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73406504	73406504	+	Silent	SNP	T	T	C	rs2305209	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	74	156	0	0.548148	0	T|0.878;C|0.122	0.122	strong	.	CDH23	365	.	NM_052836	exon13	c.T1579C	p.L527L	CTGTGTTTGTTGG	.	PASS	Atlas-SNP
CNKSR1	10256	hgsc.bcm.edu	37	1	26515956	26515956	+	Missense_Mutation	SNP	C	C	A	rs1045105	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	110	227	1	0.466102	0.00440529	A|0.120;C|0.880;T|0.000	0.120	strong	CNKSR1,colon,carcinoma,0,3	CNKSR1	66	3	NM_006314	exon21	c.C2059A	p.H687N	TCCCCCCACTCCC	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183093875	183093875	+	Silent	SNP	T	T	C	rs20557	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	54	181	0	0.415385	0	A|0.000;C|0.515;G|0.000;T|0.485	0.515	strong	.	LAMC1	176	.	NM_002293	exon14	c.T2511C	p.N837N	TCCCAATGCAGTT	.	PASS	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	37	1	157489535	157489535	+	Silent	SNP	G	G	A	rs3827757	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	114	208	0	0.485106	0	G|0.879;A|0.121	0.121	strong	.	FCRL5	177	.	NM_031281	exon13	c.C2658T	p.A886A	TTACCTGGCGGGG	.	PASS	Atlas-SNP
SLC17A4	10050	hgsc.bcm.edu	37	6	25773809	25773809	+	Silent	SNP	A	A	G	rs2275906	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	112	238	0	0.491228	0	A|0.903;G|0.097	0.097	strong	.	SLC17A4	79	.	NM_005495	exon8	c.A894G	p.L298L	CATTTTAGTCTCT	.	PASS	Atlas-SNP
DNAJB12	54788	hgsc.bcm.edu	37	10	74098037	74098037	+	Silent	SNP	A	A	G	rs138477026	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	34	71	0	0.414634	0	A|1.000;G|0.000	0.000	strong	.	DNAJB12	22	.	NM_017626	exon6	c.T858C	p.P286P	GAGGATAGGCATC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214816224	214816224	+	Missense_Mutation	SNP	G	G	A	rs2666839	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	53	93	0	0.486239	0	G|0.721;A|0.279	0.279	strong	.	CENPF	321	.	NM_016343	exon12	c.G4543A	p.A1515T	GAAGGGGCTGTTT	.	PASS	Atlas-SNP
CD1A	909	hgsc.bcm.edu	37	1	158224904	158224904	+	Missense_Mutation	SNP	C	C	T	rs2269714	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	45	92	0	0.494505	0	C|0.902;T|0.098	0.098	strong	.	CD1A	88	.	NM_001763	exon2	c.C89T	p.T30I	ATGTCACCTGGAT	.	PASS	Atlas-SNP
CD109	135228	hgsc.bcm.edu	37	6	74497152	74497152	+	Missense_Mutation	SNP	G	G	A	rs5023688	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	84	68	0	1	0	G|0.598;A|0.402	0.402	strong	.	CD109	170	.	NM_133493	exon21	c.G2533A	p.V845I	GATGCTGTCACCC	.	PASS	Atlas-SNP
DAK	26007	hgsc.bcm.edu	37	11	61111346	61111346	+	Missense_Mutation	SNP	C	C	G	rs35723406	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	18	55	0	0.439024	0	C|0.923;G|0.077	0.077	strong	.	DAK	52	.	NM_015533	exon12	c.C1001G	p.A334G	CTGCAGCAGCCTG	.	PASS	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	37	2	178762824	178762824	+	Silent	SNP	T	T	C	rs71423514	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	74	176	0	0.435294	0	T|0.895;C|0.105	0.105	strong	.	PDE11A	283	.	NM_016953	exon4	c.A1263G	p.E421E	ACAGCGTTCACAT	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36850988	36850988	+	Silent	SNP	C	C	T	rs35524973	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	13	30	0	0.481481	0	A|0.000;C|0.971;T|0.029	0.029	strong	.	KIAA1755	145	.	NM_001029864	exon10	c.G2280A	p.R760R	CAGGCACCTGGTA	.	PASS	Atlas-SNP
JMJD8	339123	hgsc.bcm.edu	37	16	733424	733424	+	Missense_Mutation	SNP	C	C	G	rs72773413	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	31	57	0	0.553571	0	C|0.996;G|0.004	0.004	strong	.	JMJD8	14	.	NM_001005920	exon6	c.G472C	p.G158R	TGTCCCCGAAGAA	.	PASS	Atlas-SNP
C1orf168	199920	hgsc.bcm.edu	37	1	57257914	57257914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	46	80	0	0.484211	0	.	.	none	C1orf168,caecum,carcinoma,+1,1	C1orf168	102	1	NM_001004303	exon2	c.C572T	p.A191V	GTCTGGGCTCCTT	.	PASS	Atlas-SNP
TFAM	7019	hgsc.bcm.edu	37	10	60145363	60145363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	43	78	0	0.452632	0	.	.	none	.	TFAM	52	.	NM_003201	exon1	c.C56T	p.A19V	CTGGAGCAGAGCT	.	PASS	Atlas-SNP
TRPV2	51393	hgsc.bcm.edu	37	17	16336992	16336992	+	Silent	SNP	C	C	G	rs14039	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	49	75	0	0.494949	0	T|0.000;G|0.355;C|0.645	0.355	strong	TRPV2,NS,carcinoma,0,1	TRPV2	74	1	NM_016113	exon13	c.C2094G	p.P698P	CAGCCCCGATGAG	.	PASS	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111996554	111996554	+	Missense_Mutation	SNP	T	T	C	rs9828502	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	68	125	0	0.5	0	T|0.713;C|0.287	0.287	strong	.	.	.	.	NM_183061	exon5	c.A472G	p.I158V	CTCTTATAGCAGC	.	PASS	Atlas-SNP
ZNF786	136051	hgsc.bcm.edu	37	7	148777770	148777770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	3	172	0	0.0151515	0	.	.	none	ZNF786,NS,carcinoma,0,1	ZNF786	69	1	NM_152411	exon2	c.G58A	p.E20K	CTTGCTCGGAGAA	.	scavenged	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	37	11	3249552	3249552	+	Missense_Mutation	SNP	C	C	T	rs4391795	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	21	28	0	0.724138	0	C|0.673;T|0.327	0.327	strong	.	MRGPRE	35	.	NM_001039165	exon2	c.G478A	p.G160S	AGGCGCCGCTGAG	.	PASS	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	37	8	87241847	87241847	+	Silent	SNP	G	G	A	rs7814198	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	30	71	0	0.434783	0	G|0.644;A|0.356	0.356	strong	.	SLC7A13	97	.	NM_138817	exon1	c.C660T	p.G220G	TGCCCCGCCTGAA	.	PASS	Atlas-SNP
PDHX	8050	hgsc.bcm.edu	37	11	34969112	34969112	+	Missense_Mutation	SNP	A	A	G	rs11539202	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	78	86	0	1	0	A|0.800;G|0.200	0.200	strong	.	PDHX	40	.	NM_003477	exon3	c.A301G	p.T101A	GTGGTTACCTTAG	.	PASS	Atlas-SNP
CNBD2	140894	hgsc.bcm.edu	37	20	34596371	34596371	+	Missense_Mutation	SNP	C	C	T	rs6060750	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	39	72	0	0.557143	0	C|0.746;T|0.254	0.254	strong	.	.	.	.	NM_080834	exon9	c.C1123T	p.P375S	ACTCTCCCCAAGA	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16870912	16870912	+	Missense_Mutation	SNP	G	G	T	rs1801232	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	50	138	0	0.393701	0	T|0.070;G|0.929	0.070	strong	.	CUBN	515	.	NM_001081	exon66	c.C10656A	p.N3552K	GTAGAAGTTGATG	.	PASS	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169621536	169621536	+	Silent	SNP	A	A	G	rs1132742	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	99	101	0	0.99	0	G|0.242;N|0.001	0.242	strong	THBS2,NS,carcinoma,0,1	THBS2	230	1	NM_003247	exon21	c.T3360C	p.T1120T	GTAGCCAGTCTTG	.	PASS	Atlas-SNP
TMED5	50999	hgsc.bcm.edu	37	1	93620393	93620393	+	Missense_Mutation	SNP	G	G	A	rs1060622	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	77	170	0	0.44	0	G|0.516;A|0.484	0.484	strong	.	TMED5	16	.	NM_016040	exon4	c.C524T	p.T175I	AGCAGAGTTTGTA	.	PASS	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	37	11	102567207	102567207	+	Missense_Mutation	SNP	T	T	A	rs1276286	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	190	165	0	0.994764	0	T|0.600;A|0.400	0.400	strong	MMP27,NS,carcinoma,0,1	MMP27	84	1	NM_022122	exon6	c.A797T	p.E266V	GCAGGTTCCTTAG	.	PASS	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122003769	122003769	+	Missense_Mutation	SNP	A	A	G	rs1042636	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	271	123	262	0	0.453875	0	A|0.871;G|0.129	0.129	strong	.	CASR	190	.	NM_001178065	exon7	c.A2998G	p.R1000G	GCCCACAGGAATT	.	PASS	Atlas-SNP
TRIM45	80263	hgsc.bcm.edu	37	1	117660754	117660754	+	Missense_Mutation	SNP	C	C	T	rs749902	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	101	183	0	0.531579	0	C|0.742;T|0.258	0.258	strong	.	TRIM45	55	.	NM_001145635	exon2	c.G1124A	p.C375Y	TGAGGACAGAAGC	.	PASS	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228884530	228884530	+	Missense_Mutation	SNP	G	G	A	rs61752225	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	119	290	0	0.450758	0	G|0.997;A|0.003	0.003	strong	SPHKAP_ENST00000392056,NS,carcinoma,-1,4	SPHKAP	750	4	NM_030623	exon7	c.C1040T	p.S347F	ATCATGGAGAAAT	.	PASS	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	37	13	25272833	25272833	+	Missense_Mutation	SNP	G	G	A	rs41288280	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	28	45	0	0.518519	0	G|0.984;A|0.016	0.016	strong	ATP12A,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ATP12A	172	1	NM_001185085	exon12	c.G1568A	p.R523H	GCAAGCGCTTCCT	.	PASS	Atlas-SNP
VILL	50853	hgsc.bcm.edu	37	3	38047954	38047954	+	Missense_Mutation	SNP	G	G	C	rs9816693	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	49	141	0	0.347518	0	G|0.800;C|0.200	0.200	strong	VILL,NS,carcinoma,0,1	VILL	61	1	NM_015873	exon18	c.G2220C	p.L740F	CAACTTGCGGCTA	.	PASS	Atlas-SNP
BEST2	54831	hgsc.bcm.edu	37	19	12863429	12863429	+	Missense_Mutation	SNP	G	G	A	rs79300835	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	53	102	0	0.495327	0	G|0.937;A|0.063	0.063	strong	.	BEST2	35	.	NM_017682	exon1	c.G23A	p.R8Q	CAGCCCGAGTGGC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214819328	214819328	+	Missense_Mutation	SNP	G	G	A	rs3748695	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	74	117	0	0.573643	0	G|0.915;A|0.085	0.085	strong	CENPF,NS,carcinoma,0,1	CENPF	321	1	NM_016343	exon13	c.G6415A	p.A2139T	CACATCGCAGAGA	.	PASS	Atlas-SNP
FCRL3	115352	hgsc.bcm.edu	37	1	157648543	157648543	+	Missense_Mutation	SNP	T	T	C	rs2282284	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	66	145	0	0.471429	0	T|0.948;C|0.052	0.052	strong	.	FCRL3	163	.	NM_052939	exon15	c.A2162G	p.N721S	TCATAGTTTTCTT	.	PASS	Atlas-SNP
G6PC3	92579	hgsc.bcm.edu	37	17	42152103	42152103	+	Silent	SNP	G	G	A	rs3815076	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	42	90	0	0.4375	0	G|0.834;A|0.166	0.166	strong	.	G6PC3	26	.	NM_138387	exon3	c.G381A	p.T127T	AATGACGGCCCTG	.	PASS	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	37	4	36069805	36069805	+	Silent	SNP	G	G	A	rs7657166	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	49	74	0	0.510417	0	G|0.777;A|0.223	0.223	strong	.	ARAP2	210	.	NM_015230	exon33	c.C4839T	p.A1613A	GCAGTGGGCCACC	.	PASS	Atlas-SNP
PPP4R1	9989	hgsc.bcm.edu	37	18	9562042	9562042	+	Missense_Mutation	SNP	C	C	T	rs2306134	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	93	172	0	0.54386	0	C|0.730;T|0.270	0.270	strong	PPP4R1_ENST00000400556,NS,carcinoma,+1,1	PPP4R1	63	1	NM_001042388	exon13	c.G1778A	p.S593N	GAATCGCTGTGAA	.	PASS	Atlas-SNP
GAL3ST2	64090	hgsc.bcm.edu	37	2	242742875	242742875	+	Missense_Mutation	SNP	C	C	T	rs62620233	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	48	113	0	0.484848	0	C|0.884;T|0.116	0.116	strong	GAL3ST2,colon,carcinoma,+1,1	GAL3ST2	34	1	NM_022134	exon4	c.C491T	p.A164V	GGGGCGCCCCGAG	.	PASS	Atlas-SNP
OR5H2	79310	hgsc.bcm.edu	37	3	98002587	98002587	+	Missense_Mutation	SNP	A	A	G	rs16839611	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	44	116	0	0.444444	0	A|0.567;G|0.433	0.433	strong	.	OR5H2	63	.	NM_001005482	exon1	c.A856G	p.I286V	ACAATCATAATTC	.	PASS	Atlas-SNP
UGT2A1	10941	hgsc.bcm.edu	37	4	70512801	70512801	+	Missense_Mutation	SNP	A	A	G	rs55864295	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	47	63	0	0.559524	0	A|0.882;G|0.118	0.118	strong	.	UGT2A1	131	.	NM_001252274	exon2	c.T562C	p.Y188H	GAGGGTATGGTAC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105410775	105410775	+	Silent	SNP	A	A	G	rs2819424	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	197	188	0	1	0	A|0.444;G|0.556	0.556	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T11013C	p.D3671D	ACTCACATCGGCT	.	PASS	Atlas-SNP
TMCO3	55002	hgsc.bcm.edu	37	13	114152755	114152755	+	Silent	SNP	C	C	T	rs2260218	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	18	78	0	0.428571	0	C|0.795;T|0.205	0.205	strong	.	TMCO3	77	.	NM_017905	exon3	c.C543T	p.D181D	GCTTGACGAGATT	.	PASS	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	37	1	109811522	109811522	+	Missense_Mutation	SNP	G	G	A	rs148006855	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	68	157	0	0.404762	0	G|0.999;A|0.001	0.001	strong	CELSR2,NS,neuroblastoma,-2,1	CELSR2	228	1	NM_001408	exon19	c.G6523A	p.D2175N	CGCTTGGACAAAG	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99141484	99141484	+	Silent	SNP	C	C	T	rs12218483	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	314	150	231	0	0.477707	0	C|0.769;T|0.231	0.231	strong	RRP12,colon,carcinoma,0,8	RRP12	97	8	NM_015179	exon11	c.G1308A	p.T436T	GCTCTGCGTAGCA	.	PASS	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	37	16	48164777	48164777	+	Silent	SNP	T	T	C	rs12149826	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	44	53	0	0.505747	0	T|0.827;C|0.173	0.173	strong	.	ABCC12	190	.	NM_033226	exon8	c.A1158G	p.V386V	CTTCATTACATTA	.	PASS	Atlas-SNP
POLR1D	51082	hgsc.bcm.edu	37	13	28239940	28239940	+	Silent	SNP	G	G	C	rs11029	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	56	104	0	0.504505	0	G|0.739;C|0.261	0.261	strong	POLR1D,caecum,carcinoma,0,2	POLR1D	31	2	NM_152705	exon3	c.G219C	p.A73A	ACCAGCGAAGAGC	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306921	1306921	+	Silent	SNP	G	G	A	rs78324915	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	603	210	382	0	0.348259	0	G|0.643;A|0.357	0.357	strong	TPSD1,NS,carcinoma,0,2	TPSD1	47	2	NM_012217	exon3	c.G378A	p.G126G	GACCGGGGCGGAC	.	PASS	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	37	4	173232805	173232805	+	Silent	SNP	G	G	A	rs9312524	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	88	242	0	0.478261	0	G|0.852;A|0.148	0.148	strong	.	GALNTL6	102	.	NM_001034845	exon4	c.G288A	p.E96E	TGAAGAGGACCAT	.	PASS	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	37	20	5903192	5903192	+	Silent	SNP	G	G	A	rs78101688	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	42	101	0	0.506024	0	A|0.036;C|0.000;G|0.964	0.036	strong	.	CHGB	112	.	NM_001819	exon4	c.G402A	p.A134A	GCGAGCGGATGAG	.	PASS	Atlas-SNP
CHRDL2	25884	hgsc.bcm.edu	37	11	74413843	74413843	+	Silent	SNP	T	T	C	rs34695217	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	23	50	0	0.575	0	T|0.957;C|0.043	0.043	strong	.	CHRDL2	47	.	NM_015424	exon9	c.A1116G	p.V372V	ACCTTTTACCAGC	.	PASS	Atlas-SNP
TTC22	55001	hgsc.bcm.edu	37	1	55266797	55266797	+	Missense_Mutation	SNP	G	G	C	rs671108	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	42	92	0	0.531646	0	G|0.830;C|0.170	0.170	strong	.	TTC22	40	.	NM_001114108	exon1	c.C40G	p.L14V	CGATGAGGGCGTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105407208	105407208	+	Silent	SNP	T	T	C	rs11851053	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	78	73	0	1	0	T|0.457;C|0.543	0.543	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A14580G	p.V4860V	AAAAGATACCTGA	.	PASS	Atlas-SNP
TXNL1	9352	hgsc.bcm.edu	37	18	54281790	54281790	+	Silent	SNP	T	T	C	rs655539	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	42	83	0	0.424242	0	T|0.962;C|0.038	0.038	strong	.	TXNL1	30	.	NM_004786	exon6	c.A600G	p.L200L	TCGGGGTAGGTTG	.	PASS	Atlas-SNP
NUF2	83540	hgsc.bcm.edu	37	1	163309219	163309219	+	Silent	SNP	A	A	T	rs1509022	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	71	130	0	0.537879	0	A|0.599;T|0.401	0.401	strong	.	NUF2	138	.	NM_145697	exon8	c.A558T	p.G186G	AGATGGAATTCAG	.	PASS	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	37	3	125826059	125826059	+	Missense_Mutation	SNP	T	T	C	rs1127717	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	39	52	0	0.975	0	T|0.800;C|0.200	0.200	strong	ALDH1L1,caecum,carcinoma,-1,1	ALDH1L1	138	1	NM_001270364	exon21	c.A2408G	p.D803G	TCCACGTCTGTGA	.	PASS	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	37	3	49751585	49751585	+	Silent	SNP	C	C	T	rs2291542	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	74	69	0	0.986667	0	C|0.736;T|0.264	0.264	strong	RNF123,caecum,carcinoma,0,1	RNF123	100	1	NM_022064	exon31	c.C2988T	p.D996D	TGAGGACGCCAAT	.	PASS	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	21151913	21151913	+	Missense_Mutation	SNP	G	G	T	rs72780891	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	90	216	0	0.502793	0	G|0.825;T|0.175	0.175	strong	DNAH3_ENST00000261383,colon,carcinoma,0,2	DNAH3	1142	2	NM_017539	exon5	c.C640A	p.Q214K	CCTGCTGTAACAT	.	PASS	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	37	18	42529996	42529996	+	Missense_Mutation	SNP	G	G	C	rs11082414	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	25	63	0	0.471698	0	A|0.000;C|0.168;G|0.832	0.168	strong	.	SETBP1	577	.	NM_015559	exon4	c.G691C	p.V231L	GGACCCGTCACTC	.	PASS	Atlas-SNP
DBC1	1620	hgsc.bcm.edu	37	9	121930416	121930416	+	Missense_Mutation	SNP	C	C	T	rs141766717	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	62	90	0	0.496	0	C|0.999;T|0.001	0.001	strong	DBC1,NS,carcinoma,0,2	DBC1	194	2	NM_014618	exon8	c.G1232A	p.R411Q	CAGCTCCGCTGGC	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134351770	134351770	+	Silent	SNP	G	G	A	rs78591540	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	36	50	0	0.493151	0	A|0.104;C|0.000;G|0.895	0.104	strong	.	PRRC2B	266	.	NM_013318	exon15	c.G4254A	p.K1418K	GGCCAAGAGGAGC	.	PASS	Atlas-SNP
PPIL2	23759	hgsc.bcm.edu	37	22	22049783	22049783	+	Silent	SNP	C	C	T	rs12484060	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	95	215	0	0.505319	0	C|0.616;T|0.384	0.384	strong	.	PPIL2	38	.	NM_148176	exon20	c.C1563T	p.S521S	TAGCAGCAGGTTG	.	PASS	Atlas-SNP
PADI6	353238	hgsc.bcm.edu	37	1	17707601	17707601	+	Silent	SNP	T	T	C	rs6669650	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	50	104	0	0.46729	0	T|0.832;C|0.168	0.168	strong	.	PADI6	51	.	NM_207421	exon5	c.T495C	p.P165P	CAACCCTGCTGAT	.	PASS	Atlas-SNP
SLC7A9	11136	hgsc.bcm.edu	37	19	33353464	33353464	+	Silent	SNP	G	G	A	rs11084673	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	41	77	0	0.506173	0	G|0.692;A|0.308	0.308	strong	.	SLC7A9	78	.	NM_001243036	exon5	c.C507T	p.S169S	CCGCACGCTCAGT	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371328	240371328	+	Silent	SNP	G	G	A	rs71646895	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	24	76	0	0.266667	0	G|0.835;A|0.165	0.165	strong	FMN2,colon,carcinoma,0,2	FMN2	451	2	NM_020066	exon5	c.G3216A	p.A1072A	CGGAGCGGGCATA	.	PASS	Atlas-SNP
ALG1L2	644974	hgsc.bcm.edu	37	3	129810158	129810158	+	Silent	SNP	C	C	T	rs6803922	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	10	9	0	1	0	C|0.798;T|0.202	0.202	strong	.	.	.	.	NM_001136152	exon2	c.C75T	p.D25D	TCTGGACCTGCAG	.	PASS	Atlas-SNP
DDX51	317781	hgsc.bcm.edu	37	12	132624669	132624669	+	Silent	SNP	G	G	A	rs12312005	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	42	75	0	0.461538	0	G|0.994;A|0.006	0.006	strong	.	DDX51	33	.	NM_175066	exon12	c.C1749T	p.P583P	GTACTGGGGGGCG	.	PASS	Atlas-SNP
CDCA7L	55536	hgsc.bcm.edu	37	7	21956405	21956405	+	Silent	SNP	G	G	A	rs1128250	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	48	108	0	0.466019	0	G|0.773;A|0.227	0.227	strong	CDCA7L,caecum,carcinoma,0,1	CDCA7L	56	1	NM_018719	exon2	c.C132T	p.C44C	ACTATCGCAGCTC	.	PASS	Atlas-SNP
BLMH	642	hgsc.bcm.edu	37	17	28612448	28612448	+	Silent	SNP	G	G	C	rs7342921	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	82	161	0	0.550336	0	G|0.708;C|0.292	0.292	strong	.	BLMH	42	.	NM_000386	exon6	c.C603G	p.T201T	TCCTTTGGTTGCT	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46876083	46876083	+	Silent	SNP	A	A	G	rs2236451	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	56	88	0	0.54902	0	A|0.628;G|0.372	0.372	strong	.	COL18A1	129	.	NM_030582	exon1	c.A639G	p.P213P	ACCACCATCTTCA	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141259283	141259283	+	Silent	SNP	G	G	A	rs35296183	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	25	53	0	0.416667	0	G|0.847;A|0.153	0.153	strong	.	LRP1B	1315	.	NM_018557	exon55	c.C8823T	p.D2941D	TTGACAGTCTTGA	.	PASS	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	37	13	114780764	114780764	+	Silent	SNP	A	A	G	rs2274717	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	31	76	0	0.476923	0	A|0.286;G|0.714	0.714	strong	.	RASA3	83	.	NM_007368	exon14	c.T1326C	p.T442T	AGACTCAGTGATG	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189616	11189616	+	Missense_Mutation	SNP	G	G	A	rs200495954		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	9	114	0	0.0612245	0	G|0.999;A|0.001	0.001	weak	AMAC1L2,right_upper_lobe,carcinoma,+1,1	.	.	1	NM_054028	exon1	c.G1001A	p.G334E	GGACAGGGAAGGT	.	scavenged	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	37	2	189858790	189858790	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	36	96	0	0.45	0	.	.	none	.	COL3A1	292	.	NM_000090	exon17	c.T1176C	p.P392P	TAGTCCTGGTGGT	.	PASS	Atlas-SNP
CRB2	286204	hgsc.bcm.edu	37	9	126134542	126134542	+	Silent	SNP	G	G	A	rs61740213	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	62	126	0	0.455882	0	G|0.606;A|0.394	0.394	strong	.	CRB2	86	.	NM_173689	exon9	c.G2523A	p.T841T	GCCTACGTGTGCC	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73205382	73205382	+	Missense_Mutation	SNP	A	A	G	rs200976886	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	92	122	0	0.554217	0	A|0.997;G|0.003	0.003	weak	.	.	.	.	NM_001080479	exon34	c.A4307G	p.E1436G	ATGAGGAGCTGGC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179455207	179455207	+	Silent	SNP	T	T	C	rs2163009	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	130	308	0	0.492424	0	T|0.557;C|0.443	0.443	strong	.	TTN	18412	.	NM_001267550	exon304	c.A61245G	p.T20415T	TTGTGCTGTGCCA	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90501514	90501514	+	Missense_Mutation	SNP	C	C	G	rs4076794	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	48	69	0	0.657534	0	C|0.751;G|0.249	0.249	strong	C9orf79,middle_lobe,carcinoma,+1,2	.	.	2	NM_178828	exon4	c.C2112G	p.D704E	CTCTGACAAGGGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281948	152281948	+	Missense_Mutation	SNP	G	G	A	rs12405241	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	361	179	329	0	0.495845	0	G|0.839;A|0.161	0.161	strong	.	FLG	900	.	NM_002016	exon3	c.C5414T	p.A1805V	TGGGACGCTGAGT	.	PASS	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	37	8	70980738	70980738	+	Missense_Mutation	SNP	T	T	C	rs3750228	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	50	119	0	0.454545	0	C|0.167;N|0.000	0.167	strong	.	PRDM14	102	.	NM_024504	exon3	c.A730G	p.K244E	AGTCTTTATCCAG	.	PASS	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79092750	79092750	+	Silent	SNP	G	G	C	rs7173267	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	17	42	0	0.5	0	G|0.752;C|0.248	0.248	strong	.	ADAMTS7	142	.	NM_014272	exon2	c.C240G	p.A80A	GTAGAAGGCGGGC	.	PASS	Atlas-SNP
USP6	9098	hgsc.bcm.edu	37	17	5037281	5037281	+	Missense_Mutation	SNP	T	T	C	rs114991387	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	25	52	0	0.5	0	T|0.943;C|0.057	0.057	strong	.	USP6	213	.	NM_004505	exon7	c.T484C	p.Y162H	GATCGATATGGAG	.	PASS	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888048	52888048	+	Silent	SNP	G	G	A	rs324124	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	22	19	0	0.594595	0	G|0.865;A|0.135	0.135	strong	.	ZNF880	45	.	NM_001145434	exon4	c.G1215A	p.E405E	GGGAGAGCAACCT	.	PASS	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	37	22	19184095	19184095	+	Missense_Mutation	SNP	T	T	C	rs1061325	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	39	74	0	0.458824	0	A|0.008;C|0.387	0.387	strong	.	CLTCL1	115	.	NM_001835	exon25	c.A3946G	p.M1316V	TGAACATGCCCAT	.	PASS	Atlas-SNP
FIBCD1	84929	hgsc.bcm.edu	37	9	133787225	133787225	+	Silent	SNP	A	A	G	rs6597650	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	60	85	0	0.46875	0	A|0.442;G|0.558	0.558	strong	.	FIBCD1	34	.	NM_001145106	exon6	c.T900C	p.D300D	GTACGCATCCCAG	.	PASS	Atlas-SNP
ADNP2	22850	hgsc.bcm.edu	37	18	77891039	77891039	+	Silent	SNP	T	T	A	rs1064058	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	53	101	0	0.395522	0	T|0.838;A|0.162	0.162	strong	.	ADNP2	102	.	NM_014913	exon3	c.T162A	p.G54G	ATGGGGTGATGTT	.	PASS	Atlas-SNP
MICAL1	64780	hgsc.bcm.edu	37	6	109768295	109768295	+	Silent	SNP	G	G	A	rs910730	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	36	58	0	0.631579	0	G|0.464;A|0.536	0.536	strong	.	MICAL1	79	.	NM_022765	exon17	c.C2208T	p.Y736Y	CTGCTCGTAGCCA	.	PASS	Atlas-SNP
BTNL3	10917	hgsc.bcm.edu	37	5	180432416	180432416	+	Silent	SNP	C	C	T	rs78885278	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	81	157	1	0.503106	0.00636943	T|1.000;|0.000	1.000	weak	BTNL3,NS,carcinoma,+1,1	BTNL3	55	1	NM_197975	exon8	c.C945T	p.P315P	AGCTCCCCAGGAG	.	scavenged	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99126249	99126249	+	Silent	SNP	G	G	A	rs2275581	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	40	59	0	0.454545	0	G|0.762;A|0.238	0.238	strong	.	RRP12	97	.	NM_015179	exon28	c.C3345T	p.D1115D	GGGCTCGTCCCCA	.	PASS	Atlas-SNP
PGM2L1	283209	hgsc.bcm.edu	37	11	74053547	74053547	+	Missense_Mutation	SNP	C	C	T	rs592644	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	94	111	0	0.989474	0	C|0.285;T|0.715	0.715	strong	.	PGM2L1	59	.	NM_173582	exon12	c.G1591A	p.V531I	TGGTAACGTCCCG	.	PASS	Atlas-SNP
BSPRY	54836	hgsc.bcm.edu	37	9	116132092	116132092	+	Missense_Mutation	SNP	G	G	C	rs818711	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	44	82	0	0.52381	0	G|0.930;C|0.070	0.070	strong	.	BSPRY	21	.	NM_017688	exon6	c.G879C	p.Q293H	TGTCCAGAACAGT	.	PASS	Atlas-SNP
TNFAIP6	7130	hgsc.bcm.edu	37	2	152226570	152226570	+	Missense_Mutation	SNP	A	A	G	rs1046668	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	43	59	0	0.589041	0	A|0.810;G|0.190	0.190	strong	.	TNFAIP6	98	.	NM_007115	exon4	c.A431G	p.Q144R	CAAAGCAAATTTT	.	PASS	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	37	2	25536827	25536827	+	Silent	SNP	G	G	A	rs41284843	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	47	59	0	0.546512	0	G|0.915;A|0.085	0.085	strong	.	DNMT3A	1807	.	NM_175630	exon2	c.C27T	p.P9P	GTCCCCGGGGCCG	.	PASS	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062648	71062648	+	Missense_Mutation	SNP	G	G	A	rs10489990	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	65	128	1	0.585586	0.0078125	G|0.716;A|0.284	0.284	strong	CD207,NS,carcinoma,0,1	CD207	47	1	NM_015717	exon2	c.C164T	p.A55V	ACGGAGGCGACCA	.	scavenged	Atlas-SNP
IL17RC	84818	hgsc.bcm.edu	37	3	9960070	9960070	+	Missense_Mutation	SNP	C	C	T	rs708567	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	59	88	0	1	0	T|0.437;G|0.004	0.437	strong	.	IL17RC	55	.	NM_153461	exon4	c.C545T	p.S182L	CTGACTCAGGGGT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214818945	214818945	+	Missense_Mutation	SNP	A	A	C	rs3790647	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	61	121	0	0.429577	0	A|0.916;C|0.083;T|0.000	0.083	strong	.	CENPF	321	.	NM_016343	exon13	c.A6032C	p.E2011A	TGAAGGAAAAGAC	.	PASS	Atlas-SNP
PROC	5624	hgsc.bcm.edu	37	2	128183690	128183690	+	Missense_Mutation	SNP	C	C	T	rs146922325	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	77	186	0	0.435028	0	C|0.999;T|0.001	0.001	strong	.	PROC	31	.	NM_000312	exon7	c.C565T	p.R189W	TGGAAGCGGATGG	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79371474	79371474	+	Silent	SNP	C	C	T	rs17003235	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	62	100	0	0.563636	0	C|0.828;T|0.172	0.172	strong	.	FRAS1	779	.	NM_025074	exon45	c.C6444T	p.T2148T	TTTCACCCAGGCA	.	PASS	Atlas-SNP
SOS2	6655	hgsc.bcm.edu	37	14	50616878	50616878	+	Silent	SNP	G	G	A	rs2229869	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	189	189	1	0.994737	0.00529101	G|0.426;A|0.574	0.574	strong	.	SOS2	195	.	NM_006939	exon14	c.C2232T	p.N744N	TACTCCGTTTGCC	.	PASS	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31770009	31770009	+	Silent	SNP	C	C	T	rs28609894	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	45	76	0	0.608108	0	C|0.717;T|0.283	0.283	strong	.	TSHZ3	549	.	NM_020856	exon2	c.G690A	p.T230T	GTGCACCGTCAAC	.	PASS	Atlas-SNP
VNN1	8876	hgsc.bcm.edu	37	6	133035098	133035098	+	Missense_Mutation	SNP	G	G	A	rs2294757	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	57	91	0	0.564356	0	G|0.474;A|0.525	0.525	strong	.	VNN1	69	.	NM_004666	exon1	c.C77T	p.T26I	GCTGCAGTGAAAG	.	PASS	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	37	11	76919478	76919478	+	Missense_Mutation	SNP	C	C	A	rs948962	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	41	101	0	0.427083	0	C|0.478;A|0.522	0.522	strong	.	MYO7A	164	.	NM_000260	exon43	c.C5860A	p.L1954I	CAGGTCCTCAGCG	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	37	19	22952111	22952111	+	Missense_Mutation	SNP	A	A	G	rs34726149	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	55	86	0	0.419847	0	A|0.809;G|0.191	0.191	strong	ZNF99,NS,carcinoma,0,1	ZNF99	273	1	NM_001080409	exon2	c.T19C	p.W7R	CATCCCAAAATGT	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179413110	179413110	+	Silent	SNP	G	G	A	rs3731748	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	43	99	0	0.394495	0	G|0.798;A|0.202	0.202	strong	.	TTN	18412	.	NM_001267550	exon339	c.C93243T	p.A31081A	ACCTTCGGCCAGG	.	PASS	Atlas-SNP
AGL	178	hgsc.bcm.edu	37	1	100358103	100358103	+	Missense_Mutation	SNP	C	C	T	rs3753494	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	64	123	0	0.52459	0	C|0.869;T|0.131	0.131	strong	.	AGL	137	.	NM_000644	exon24	c.C3199T	p.P1067S	GATGTACCTTATA	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	37	1	232596859	232596859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	90	186	0	0.520231	0	.	.	none	.	SIPA1L2	218	.	NM_020808	exon8	c.G2869A	p.G957R	CCAGCCCGTTCCT	.	PASS	Atlas-SNP
ACSS1	84532	hgsc.bcm.edu	37	20	25011423	25011423	+	Silent	SNP	T	T	C	rs6050259	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	39	74	0	0.428571	0	T|0.725;C|0.275	0.275	strong	.	ACSS1	46	.	NM_001252677	exon3	c.A603G	p.A201A	GGACTCTGCACTG	.	PASS	Atlas-SNP
FHL5	9457	hgsc.bcm.edu	37	6	97063522	97063522	+	Missense_Mutation	SNP	C	C	G	rs9373985	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	72	125	0	0.529412	0	C|0.612;G|0.388	0.388	strong	.	FHL5	73	.	NM_020482	exon7	c.C729G	p.S243R	AGACAGCCAGTGG	.	PASS	Atlas-SNP
SCNN1B	6338	hgsc.bcm.edu	37	16	23379279	23379279	+	Silent	SNP	C	C	T	rs250563	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	65	121	0	0.445205	0	C|0.894;T|0.106	0.106	strong	.	SCNN1B	81	.	NM_000336	exon5	c.C879T	p.F293F	TGAATTCGGTGAG	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	37	10	29777558	29777558	+	Silent	SNP	G	G	A	rs61737742	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	30	82	0	0.422535	0	G|0.911;A|0.089	0.089	strong	.	SVIL	226	.	NM_021738	exon23	c.C4320T	p.Y1440Y	CCTCTTGTAGGGC	.	PASS	Atlas-SNP
GYPC	2995	hgsc.bcm.edu	37	2	127453664	127453664	+	Silent	SNP	A	A	C	rs1050967	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	149	143	0	1	0	A|0.405;C|0.595	0.595	strong	.	GYPC	27	.	NM_002101	exon4	c.A333C	p.G111G	GCAGGGAGACCCT	.	PASS	Atlas-SNP
LRRC8B	23507	hgsc.bcm.edu	37	1	90049040	90049040	+	Silent	SNP	A	A	G	rs36084789	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	58	119	0	0.47541	0	A|0.813;G|0.187	0.187	strong	.	LRRC8B	49	.	NM_015350	exon5	c.A831G	p.P277P	TGTTCCATATTTT	.	PASS	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43269705	43269705	+	Missense_Mutation	SNP	G	G	A	rs7245423	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	16	24	0	0.390244	0	G|0.635;A|0.365	0.365	strong	.	PSG8	101	.	NM_001130168	exon1	c.C29T	p.T10I	CGCTGTGTGCAGG	.	PASS	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	37	9	111659483	111659483	+	Missense_Mutation	SNP	T	T	G	rs2230793	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	94	170	0	0.516484	0	T|0.728;G|0.272	0.272	strong	IKBKAP,NS,carcinoma,+2,1	IKBKAP	122	1	NM_003640	exon23	c.A2446C	p.I816L	GGTCTATTTTATT	.	PASS	Atlas-SNP
PHLDB3	653583	hgsc.bcm.edu	37	19	44001379	44001379	+	Missense_Mutation	SNP	T	T	C	rs11083711	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	49	86	0	0.532609	0	T|0.939;C|0.061	0.061	strong	.	PHLDB3	30	.	NM_198850	exon6	c.A716G	p.Q239R	AGTTGCTGGAACT	.	PASS	Atlas-SNP
POU5F1	5460	hgsc.bcm.edu	37	6	31138310	31138310	+	Missense_Mutation	SNP	C	C	T	rs61743728	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	76	67	0	0.987013	0	C|0.974;T|0.026	0.026	strong	.	POU5F1	25	.	NM_002701	exon1	c.G88A	p.V30I	GATCAACCCAGCC	.	PASS	Atlas-SNP
PPIF	10105	hgsc.bcm.edu	37	10	81109458	81109458	+	Silent	SNP	C	C	T	rs2233719	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	59	155	0	0.409722	0	C|0.964;T|0.036	0.036	strong	.	PPIF	15	.	NM_005729	exon3	c.C264T	p.F88F	GGGCTTCGGCTAC	.	PASS	Atlas-SNP
GAK	2580	hgsc.bcm.edu	37	4	860192	860192	+	Silent	SNP	A	A	G	rs1064207	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	108	122	1	0.990826	0.00819672	A|0.389;G|0.611	0.611	strong	.	GAK	104	.	NM_005255	exon22	c.T3003C	p.S1001S	CGGAGCACTGTGG	.	PASS	Atlas-SNP
OR13J1	392309	hgsc.bcm.edu	37	9	35870225	35870225	+	Silent	SNP	G	G	A	rs72727089	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	128	128	0	0.992248	0	G|0.779;A|0.221	0.221	strong	.	OR13J1	37	.	NM_001004487	exon1	c.C174T	p.P58P	GTACACGGGCGTG	.	PASS	Atlas-SNP
ELF1	1997	hgsc.bcm.edu	37	13	41515286	41515286	+	Missense_Mutation	SNP	T	T	A	rs1056820	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	52	128	0	0.4	0	T|0.513;A|0.487	0.487	strong	ELF1,colon,carcinoma,0,1	ELF1	65	1	NM_172373	exon8	c.A1027T	p.T343S	GAACTGTAGTGGC	.	PASS	Atlas-SNP
PIGO	84720	hgsc.bcm.edu	37	9	35091880	35091880	+	Silent	SNP	C	C	T	rs10814196	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	23	46	0	0.359375	0	C|0.816;T|0.184	0.184	strong	.	PIGO	86	.	NM_032634	exon7	c.G2004A	p.L668L	ATACCACAAATTC	.	PASS	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	37	17	74383601	74383601	+	Silent	SNP	C	C	T	rs346802	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	22	48	0	0.52381	0	C|0.943;T|0.057	0.057	strong	.	SPHK1	24	.	NM_182965	exon6	c.C1347T	p.S449S	GGTCAGCGGTTGC	.	PASS	Atlas-SNP
PGC	5225	hgsc.bcm.edu	37	6	41710111	41710111	+	Silent	SNP	G	G	A	rs61731757	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	59	116	0	0.491667	0	G|0.994;A|0.006	0.006	strong	.	PGC	56	.	NM_002630	exon5	c.C564T	p.S188S	ATCCACGGACAGA	.	PASS	Atlas-SNP
AQP8	343	hgsc.bcm.edu	37	16	25239805	25239805	+	Missense_Mutation	SNP	G	G	C	rs2287798	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	39	86	1	0.438202	0.0116279	G|0.599;C|0.401	0.401	strong	AQP8_ENST00000219660,NS,carcinoma,0,2	AQP8	75	2	NM_001169	exon6	c.G778C	p.A260P	CTGAAGGCTCGGT	.	scavenged	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	37	17	62018931	62018931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	62	142	0	0.446043	0	.	.	none	.	SCN4A	205	.	NM_000334	exon24	c.C4711T	p.P1571S	TGGAGGGGTTGCC	.	PASS	Atlas-SNP
C12orf5	57103	hgsc.bcm.edu	37	12	4461485	4461485	+	Silent	SNP	G	G	A	rs7133330	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	64	0	0.457143	0	G|0.799;A|0.201	0.201	strong	.	C12orf5	28	.	NM_020375	exon6	c.G441A	p.A147A	AGAAGCGGATCAA	.	PASS	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	37	6	29080386	29080386	+	Missense_Mutation	SNP	T	T	C	rs79293918	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	345	152	318	1	0.44058	0.00314465	T|0.981;C|0.019	0.019	strong	.	OR2J3	53	.	NM_001005216	exon1	c.T719C	p.V240A	AGAAAGTGTTTGG	.	PASS	Atlas-SNP
TRIM14	9830	hgsc.bcm.edu	37	9	100857170	100857170	+	Silent	SNP	A	A	G	rs150211153	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	57	123	0	0.504425	0	A|0.999;G|0.001	0.001	strong	.	TRIM14	24	.	NM_033219	exon4	c.T679C	p.L227L	TGTCCAATGGCGT	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47786524	47786524	+	Missense_Mutation	SNP	A	A	G	rs2839227	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	258	120	240	1	0.465116	0.00416667	A|0.704;C|0.002	.	strong	.	PCNT	283	.	NM_006031	exon15	c.A2635G	p.T879A	GAGATCACCGAGA	.	PASS	Atlas-SNP
DNAAF1	123872	hgsc.bcm.edu	37	16	84203612	84203612	+	Missense_Mutation	SNP	A	A	G	rs17856705	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	59	68	0	0.62766	0	A|0.639;G|0.361	0.361	strong	DNAAF1,NS,carcinoma,0,1	DNAAF1	81	1	NM_178452	exon8	c.A1178G	p.K393R	CGGAAAAGCCAAG	.	PASS	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	37	7	117306991	117306991	+	Silent	SNP	C	C	T	rs1800135	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	92	218	1	0.481675	0.00458716	C|0.994;T|0.006	0.006	strong	.	CFTR	171	.	NM_000492	exon27	c.C4272T	p.Y1424Y	GCAGTACGATTCC	.	PASS	Atlas-SNP
NHSL1	57224	hgsc.bcm.edu	37	6	138745299	138745299	+	Silent	SNP	G	G	A	rs9495082	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	10	19	0	0.357143	0	G|0.893;A|0.107	0.107	strong	.	NHSL1	99	.	NM_020464	exon7	c.C4752T	p.P1584P	AGGGCCGGGGGCC	.	PASS	Atlas-SNP
MYBPC3	4607	hgsc.bcm.edu	37	11	47354787	47354787	+	Silent	SNP	C	C	T	rs1052373	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	66	124	0	0.554622	0	C|0.557;T|0.443	0.443	strong	.	MYBPC3	102	.	NM_000256	exon29	c.G3288A	p.E1096E	CCAGAGCTCCGTG	.	PASS	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	37	17	72346855	72346855	+	Silent	SNP	T	T	C	rs11077744	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	113	112	1	0.991228	0.00892857	T|0.397;C|0.603	0.603	strong	.	KIF19	102	.	NM_153209	exon12	c.T1398C	p.H466H	GAAGCATGAGAAG	.	PASS	Atlas-SNP
DPP7	29952	hgsc.bcm.edu	37	9	140008934	140008934	+	Silent	SNP	A	A	G	rs11145999	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	29	11	0	1	0	A|0.728;G|0.272;T|0.000	0.272	strong	.	DPP7	22	.	NM_013379	exon2	c.T162C	p.P54P	GCGCTGAGGGAAG	.	PASS	Atlas-SNP
SMCO3	0	hgsc.bcm.edu	37	12	14959006	14959006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	104	237	0	0.427984	0	.	.	none	.	.	.	.	NM_001013698	exon2	c.A609C	p.K203N	GGCTGATTTGAAC	.	PASS	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	37	22	36691691	36691691	+	Silent	SNP	T	T	C	rs875725	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	53	113	0	0.490741	0	T|0.965;C|0.035	0.035	strong	.	MYH9	225	.	NM_002473	exon26	c.A3345G	p.E1115E	CTGGAGTTCAGAG	.	PASS	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	37	11	101359750	101359750	+	Missense_Mutation	SNP	G	G	A	rs36111323	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	46	96	0	0.534884	0	A|0.083;G|0.917	0.083	strong	TRPC6,right_lower_lobe,carcinoma,+1,1	TRPC6	132	1	NM_004621	exon4	c.C1211T	p.A404V	TTGACCGCCATTG	.	PASS	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	37	18	29795101	29795101	+	Missense_Mutation	SNP	T	T	C	rs233223	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	63	142	0	0.42	0	T|0.171;C|0.829	0.829	strong	.	MEP1B	54	.	NM_005925	exon12	c.T1636C	p.S546P	TTGTTCTCTAATG	.	PASS	Atlas-SNP
MTNR1A	4543	hgsc.bcm.edu	37	4	187454951	187454951	+	Silent	SNP	T	T	C	rs8192551	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	89	204	0	0.447236	0	T|0.936;C|0.064	0.064	strong	.	MTNR1A	46	.	NM_005958	exon2	c.A945G	p.T315T	CCTGGCTGTACAG	.	PASS	Atlas-SNP
L1TD1	54596	hgsc.bcm.edu	37	1	62676612	62676612	+	Silent	SNP	A	A	G	rs66958136	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	117	234	0	0.529412	0	A|0.804;G|0.196	0.196	strong	L1TD1,NS,carcinoma,0,2	L1TD1	114	2	NM_001164835	exon5	c.A2166G	p.K722K	AATTAAAGAAATA	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88535785	88535785	+	Silent	SNP	C	C	T	rs116512524	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	114	195	7	0.504425	0.0358974	C|0.828;T|0.172	0.172	strong	DSPP,NS,carcinoma,0,1	DSPP	174	1	NM_014208	exon5	c.C1971T	p.S657S	TAGCAGCGACAGC	.	scavenged	Atlas-SNP
LILRB4	11006	hgsc.bcm.edu	37	19	55174498	55174498	+	Missense_Mutation	SNP	T	T	C	rs28366008	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	23	47	1	0.46	0.0212766	T|0.700;C|0.300	0.300	strong	LILRB4,NS,carcinoma,0,1	LILRB4	86	1	NM_006847	exon1	c.T13C	p.F5L	CCCACCTTCACGG	.	scavenged	Atlas-SNP
RASSF3	283349	hgsc.bcm.edu	37	12	65004520	65004520	+	Silent	SNP	A	A	G	rs77813527	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	8	6	0	0.666667	0	A|0.835;G|0.165	0.165	strong	RASSF3,brain,glioma,0,4	RASSF3	18	4	NM_178169	exon1	c.A108G	p.Q36Q	CGGCCAACAAGTG	.	PASS	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	37	6	43251118	43251118	+	Silent	SNP	C	C	T	rs45515398	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	44	71	0	0.578947	0	C|0.863;T|0.137	0.137	strong	TTBK1,NS,carcinoma,0,1	TTBK1	124	1	NM_032538	exon14	c.C2640T	p.D880D	GCTGGACGTATCT	.	PASS	Atlas-SNP
C11orf86	254439	hgsc.bcm.edu	37	11	66743098	66743098	+	Missense_Mutation	SNP	C	C	T	rs118060724	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	21	38	0	0.488372	0	C|0.969;T|0.031	0.031	strong	.	C11orf86	7	.	NM_001136485	exon1	c.C265T	p.R89W	CTGAGGCGGTACC	.	PASS	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	37	6	33406556	33406556	+	Silent	SNP	A	A	G	rs7759963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	54	122	0	0.469565	0	A|0.933;G|0.067	0.067	strong	.	SYNGAP1	202	.	NM_006772	exon10	c.A1536G	p.E512E	AGGAGAATTCATC	.	PASS	Atlas-SNP
MMP2	4313	hgsc.bcm.edu	37	16	55519535	55519535	+	Silent	SNP	G	G	C	rs1132896	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	68	139	0	0.535433	0	G|0.738;C|0.262	0.262	strong	.	MMP2	119	.	NM_004530	exon5	c.G678C	p.G226G	GTATGGGAACGCC	.	PASS	Atlas-SNP
HDC	3067	hgsc.bcm.edu	37	15	50555544	50555544	+	Missense_Mutation	SNP	G	G	A	rs17740607	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	40	100	0	0.47619	0	G|0.928;A|0.072	0.072	strong	.	HDC	86	.	NM_002112	exon2	c.C92T	p.T31M	TCTGGCGTCACAC	.	PASS	Atlas-SNP
MDM2	4193	hgsc.bcm.edu	37	12	69222634	69222634	+	Silent	SNP	C	C	T	rs1795480	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	66	122	0	0.536585	0	C|0.983;T|0.017	0.017	strong	.	MDM2	92	.	NM_002392	exon8	c.C607T	p.L203L	GAAAGCCTGGCTC	.	PASS	Atlas-SNP
GC	2638	hgsc.bcm.edu	37	4	72620788	72620788	+	Silent	SNP	C	C	T	rs76803094	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	70	159	0	0.426829	0	C|0.981;T|0.019	0.019	strong	GC,NS,carcinoma,0,1	GC	132	1	NM_001204307	exon10	c.G1128A	p.P376P	TACTTCCGGAAGA	.	PASS	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	37	7	84628989	84628989	+	Missense_Mutation	SNP	T	T	G	rs7800072	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	116	223	1	0.515556	0.00448431	T|0.671;G|0.329	0.329	strong	SEMA3D,rectum,carcinoma,0,1	SEMA3D	177	1	NM_152754	exon17	c.A2101C	p.K701Q	TGACCTTCCCCTC	.	PASS	Atlas-SNP
COMMD10	51397	hgsc.bcm.edu	37	5	115428381	115428381	+	Missense_Mutation	SNP	T	T	G	rs1129495	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	34	92	0	0.557377	0	T|0.876;G|0.124	0.124	strong	.	COMMD10	18	.	NM_016144	exon4	c.T383G	p.I128S	AGAGAATTCTGGC	.	PASS	Atlas-SNP
ADA	100	hgsc.bcm.edu	37	20	43254298	43254298	+	Silent	SNP	C	C	T	rs61737144	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	95	153	0	0.5	0	C|0.960;T|0.040	0.040	strong	ADA,caecum,carcinoma,0,1	ADA	42	1	NM_000022	exon5	c.G390A	p.V130V	TAGGGCCACCACC	.	PASS	Atlas-SNP
ENPP7	339221	hgsc.bcm.edu	37	17	77710990	77710990	+	Missense_Mutation	SNP	C	C	T	rs139719997	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	38	64	0	0.417582	0	C|0.997;T|0.003	0.003	strong	ENPP7,NS,carcinoma,-2,1	ENPP7	63	1	NM_178543	exon4	c.C1177T	p.R393W	ATGTGCCGGCTGC	.	PASS	Atlas-SNP
LRRC6	23639	hgsc.bcm.edu	37	8	133584558	133584558	+	Missense_Mutation	SNP	A	A	G	rs9297853	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	287	140	264	1	0.487805	0.00378788	A|0.843;G|0.157	0.157	strong	.	LRRC6	58	.	NM_012472	exon12	c.T1397C	p.I466T	TTTCAAATCAGCG	.	PASS	Atlas-SNP
GP6	51206	hgsc.bcm.edu	37	19	55526373	55526373	+	Missense_Mutation	SNP	G	G	C	rs2304166	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	8	22	0	0.275862	0	G|0.538;C|0.462	0.462	strong	GP6,colon,carcinoma,0,1	GP6	55	1	NM_001083899	exon8	c.C940G	p.P314A	GGGCGGGAGGGGC	.	PASS	Atlas-SNP
GOLGA6C	653641	hgsc.bcm.edu	37	15	75562495	75562495	+	Silent	SNP	G	G	T	rs2636845		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	353	5	292	1	0.0141643	0.00342466	.	.	weak	GOLGA6C_ENST00000300576,bladder,carcinoma,0,3	GOLGA6C	12	3	NM_001164404	exon18	c.G2037T	p.P679P	CCCCCCGGTACAG	.	scavenged	Atlas-SNP
LRRC6	23639	hgsc.bcm.edu	37	8	133637659	133637659	+	Missense_Mutation	SNP	G	G	A	rs2293979	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	90	182	0	0.445545	0	G|0.487;A|0.513	0.513	strong	.	LRRC6	58	.	NM_012472	exon6	c.C695T	p.T232I	TCCTCTGTGTCTG	.	PASS	Atlas-SNP
RGPD3	653489	hgsc.bcm.edu	37	2	107049714	107049714	+	Missense_Mutation	SNP	C	C	G	rs79619029		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	642	181	581	1	0.281931	0.00172117	C|0.250;G|0.750	0.750	weak	RGPD3_ENST00000304514,right_upper_lobe,carcinoma,0,2	RGPD3	316	2	NM_001144013	exon16	c.G2233C	p.E745Q	GCATCTCTTTTAC	.	scavenged	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093296	1093296	+	Silent	SNP	T	T	C	rs56068864		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	14	45	5	0.208955	0.111111	.	.	weak	MUC2_ENST00000441003,rectum,carcinoma,+1,2	MUC2	614	2	NM_002457	exon30	c.T5115C	p.T1705T	CACCACTACGGTG	.	scavenged	Atlas-SNP
IFNAR1	3454	hgsc.bcm.edu	37	21	34715699	34715699	+	Missense_Mutation	SNP	G	G	C	rs2257167	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	43	125	0	0.377193	0	G|0.831;C|0.169	0.169	strong	.	IFNAR1	44	.	NM_000629	exon4	c.G502C	p.V168L	AGCTTAGTTATCT	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158592901	158592901	+	Missense_Mutation	SNP	C	C	G	rs77877855	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	100	260	0	0.452489	0	C|0.961;G|0.039	0.039	strong	.	SPTA1	720	.	NM_003126	exon43	c.G5992C	p.A1998P	GTTGAGCAGAAAT	.	PASS	Atlas-SNP
GNRH1	2796	hgsc.bcm.edu	37	8	25280800	25280800	+	Missense_Mutation	SNP	C	C	G	rs6185	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	32	77	0	0.390244	0	C|0.738;G|0.262	0.262	strong	.	GNRH1	8	.	NM_000825	exon1	c.G59C	p.W20S	ACGCACCAAGTCA	.	PASS	Atlas-SNP
NOMO2	283820	hgsc.bcm.edu	37	16	18532182	18532182	+	Missense_Mutation	SNP	A	A	T	rs62038475		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	936	34	1094	5	0.0363248	0.00457038	.	.	weak	NOMO2,NS,carcinoma,0,1	NOMO2	36	1	NM_173614	exon19	c.T2178A	p.N726K	TTCCTCATTGCCG	.	scavenged	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152129087	152129087	+	Missense_Mutation	SNP	T	T	C	rs78544048	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	297	113	329	1	0.380471	0.00303951	T|0.756;C|0.244	0.244	strong	.	RPTN	123	.	NM_001122965	exon3	c.A488G	p.K163R	TCTTGTTTCTCAG	.	PASS	Atlas-SNP
VPS33B	26276	hgsc.bcm.edu	37	15	91543761	91543761	+	Missense_Mutation	SNP	C	C	T	rs11073964	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	76	0	0.526316	0	C|0.359;T|0.641	0.641	strong	.	VPS33B	42	.	NM_018668	exon20	c.G1540A	p.G514S	CACCACCGAAGAC	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	37	10	129902131	129902131	+	Missense_Mutation	SNP	T	T	C	rs146439186	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	88	157	0	0.413146	0	T|0.998;C|0.002	0.002	strong	.	MKI67	363	.	NM_002417	exon13	c.A7973G	p.E2658G	TCCTCTTCTACTG	.	PASS	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	37	1	120468425	120468425	+	Silent	SNP	G	G	A	rs17024525	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	70	140	0	0.457516	0	A|0.027;G|0.973	0.027	strong	.	NOTCH2	348	.	NM_024408	exon25	c.C4014T	p.S1338S	TGCCCCGGAAAAT	.	PASS	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	37	8	142228809	142228809	+	Silent	SNP	T	T	C	rs753779	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	92	175	0	0.462312	0	T|0.319;C|0.681	0.681	strong	.	SLC45A4	71	.	NM_001080431	exon4	c.A777G	p.A259A	GTGCAATGCCGAG	.	PASS	Atlas-SNP
RFPL3	10738	hgsc.bcm.edu	37	22	32754286	32754286	+	Silent	SNP	G	G	A	rs9621426	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	271	137	266	0	0.505535	0	G|0.979;A|0.021	0.021	strong	.	RFPL3	91	.	NM_001098535	exon1	c.G228A	p.L76L	GGATCTGCTTTGC	.	PASS	Atlas-SNP
TTLL2	83887	hgsc.bcm.edu	37	6	167754721	167754721	+	Missense_Mutation	SNP	G	G	A	rs9457304	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	37	90	0	0.474359	0	G|0.915;A|0.085	0.085	strong	.	TTLL2	82	.	NM_031949	exon3	c.G1333A	p.G445S	GACAGAGGTGGGC	.	PASS	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134226278	134226278	+	Silent	SNP	C	C	T	rs3802928	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	39	60	0	0.513158	0	C|0.888;T|0.112	0.112	strong	GLB1L2,NS,carcinoma,0,1	GLB1L2	79	1	NM_138342	exon6	c.C642T	p.Y214Y	GCCCTACGTCAAG	.	PASS	Atlas-SNP
APLP1	333	hgsc.bcm.edu	37	19	36370011	36370011	+	Silent	SNP	G	G	A	rs2227909	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	27	36	0	0.574468	0	G|0.886;A|0.114	0.114	strong	.	APLP1	77	.	NM_001024807	exon16	c.G1749A	p.V583V	GGCTGTGTCGGGT	.	PASS	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	37	20	31671575	31671575	+	Missense_Mutation	SNP	T	T	G	rs144272671	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	74	90	0	0.582677	0	T|0.998;G|0.002	0.002	strong	.	.	.	.	NM_182519	exon3	c.T572G	p.L191R	GCCTGCTCGGCGG	.	PASS	Atlas-SNP
POLRMT	5442	hgsc.bcm.edu	37	19	619021	619021	+	Silent	SNP	G	G	C	rs14155	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	110	196	0	0.474138	0	G|0.442;C|0.558	0.558	strong	POLRMT,colon,carcinoma,0,2	POLRMT	91	2	NM_005035	exon15	c.C3243G	p.P1081P	GCGATAGGGCTGG	.	PASS	Atlas-SNP
ACOXL	55289	hgsc.bcm.edu	37	2	111666368	111666368	+	Missense_Mutation	SNP	G	G	A	rs116012262	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	67	168	0	0.540323	0	G|0.999;A|0.001	0.001	strong	.	ACOXL	93	.	NM_001142807	exon11	c.G791A	p.R264Q	CTAGCCGGAGGCA	.	PASS	Atlas-SNP
GNB4	59345	hgsc.bcm.edu	37	3	179137273	179137273	+	Silent	SNP	A	A	G	rs1362650	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	60	128	0	0.504202	0	A|0.538;G|0.462	0.462	strong	.	GNB4	37	.	NM_021629	exon4	c.T117C	p.S39S	ACCCACAGAGTCC	.	PASS	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	37	15	68653946	68653946	+	Missense_Mutation	SNP	C	C	T	rs148886354	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	29	51	0	0.568627	0	C|0.999;T|0.001	0.001	strong	.	ITGA11	110	.	NM_001004439	exon5	c.G454A	p.V152M	GGGCCACGGTCTT	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	37	12	104048446	104048446	+	Missense_Mutation	SNP	G	G	T	rs149524008	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	41	85	0	0.539474	0	G|0.992;T|0.008	0.008	strong	.	STAB2	370	.	NM_017564	exon13	c.G1521T	p.K507N	GGACAAGTTAGAA	.	PASS	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	37	18	335099	335099	+	Missense_Mutation	SNP	T	T	C	rs8098850	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	19	46	0	0.358491	0	T|0.944;C|0.056	0.056	strong	.	COLEC12	121	.	NM_130386	exon6	c.A1459G	p.I487V	GTCCAATTGGGCC	.	PASS	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	37	14	93994954	93994954	+	Silent	SNP	G	G	A	rs28420706	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	89	139	0	0.593333	0	G|0.462;A|0.538	0.538	strong	KIAA1409,NS,carcinoma,0,1	UNC79	366	1	NM_020818	exon9	c.G483A	p.P161P	ACCCCCGTTGTAT	.	PASS	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	37	16	89294595	89294595	+	Silent	SNP	C	C	T	rs74466939	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	36	70	0	0.473684	0	C|0.863;T|0.137	0.137	strong	.	ZNF778	67	.	NM_001201407	exon7	c.C1899T	p.I633I	CCTTATCGTGCAC	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2410332	2410332	+	Silent	SNP	T	T	C	rs3848635	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	51	86	0	0.593023	0	T|0.629;C|0.371	0.371	strong	.	TMPRSS9	79	.	NM_182973	exon8	c.T1092C	p.H364H	CGGCCATTCACTC	.	PASS	Atlas-SNP
GAMT	2593	hgsc.bcm.edu	37	19	1397443	1397443	+	Missense_Mutation	SNP	G	G	A	rs17851582	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	35	50	0	0.460526	0	G|0.939;A|0.061	0.061	strong	.	GAMT	39	.	NM_000156	exon6	c.C626T	p.T209M	ACCTCCGTACGGA	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790268	4790268	+	Missense_Mutation	SNP	C	C	A	rs1030726	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	48	96	0	0.475248	0	C|0.712;A|0.288	0.288	strong	.	OR51F1	60	.	NM_001004752	exon1	c.G880T	p.D294Y	CACTGTCGATGAT	.	PASS	Atlas-SNP
CC2D1B	200014	hgsc.bcm.edu	37	1	52828384	52828384	+	Missense_Mutation	SNP	A	A	G	rs11555349	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	33	75	0	0.5	0	A|0.928;G|0.072	0.072	strong	.	CC2D1B	73	.	NM_032449	exon3	c.T104C	p.M35T	AGCAGCATGTCCT	.	PASS	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	37	5	161113004	161113004	+	Silent	SNP	G	G	A	rs13188991	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	94	219	0	0.477157	0	G|0.841;A|0.159	0.159	strong	GABRA6,brain,primitive_neuroectodermal_tumour-medulloblastoma,+1,1	GABRA6	139	1	NM_000811	exon1	c.G9A	p.S3S	GGCGTCGTCTCTG	.	PASS	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	37	11	7662732	7662732	+	Silent	SNP	C	C	T	rs4643071	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	44	144	0	0.4	0	C|0.307;T|0.693	0.693	strong	PPFIBP2,NS,carcinoma,+1,1	PPFIBP2	87	1	NM_003621	exon16	c.C1398T	p.D466D	CTGGGACGACACT	.	PASS	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	37	6	37631768	37631768	+	Missense_Mutation	SNP	A	A	G	rs10947690	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	50	79	0	0.49505	0	A|0.894;G|0.106	0.106	strong	.	MDGA1	104	.	NM_153487	exon2	c.T182C	p.L61P	GTTACAAGGCACT	.	PASS	Atlas-SNP
KMO	8564	hgsc.bcm.edu	37	1	241755348	241755348	+	Missense_Mutation	SNP	C	C	T	rs1053230	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	42	72	0	0.446809	0	C|0.853;T|0.147	0.147	strong	KMO,NS,adenoma,0,1	KMO	69	1	NM_003679	exon15	c.C1354T	p.R452C	TTCCTCCGCTTGA	.	PASS	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	37	19	5455976	5455976	+	Silent	SNP	C	C	T	rs61740902	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	24	19	0	1	0	C|0.851;T|0.149	0.149	strong	.	ZNRF4	59	.	NM_181710	exon1	c.C474T	p.I158I	CGCCATCGTGCTG	.	PASS	Atlas-SNP
GALNT8	26290	hgsc.bcm.edu	37	12	4830000	4830000	+	Missense_Mutation	SNP	T	T	G	rs10849133	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	61	142	0	0.451852	0	G|0.410;N|0.000	0.410	strong	GALNT8,NS,carcinoma,0,2	GALNT8	89	2	NM_017417	exon1	c.T157G	p.Y53D	AAACGCTACGGGG	.	PASS	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	37	14	104497543	104497543	+	Silent	SNP	C	C	T	rs10135507	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	61	116	0	0.462121	0	C|0.684;T|0.316	0.316	strong	TDRD9_ENST00000409874,NS,carcinoma,0,2	TDRD9	175	2	NM_153046	exon29	c.C3381T	p.L1127L	ATATCTCATCCGG	.	PASS	Atlas-SNP
TCTN2	79867	hgsc.bcm.edu	37	12	124171538	124171538	+	Silent	SNP	C	C	G	rs149430216	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	98	223	0	0.4689	0	C|0.996;G|0.004	0.004	strong	.	TCTN2	50	.	NM_024809	exon6	c.C720G	p.P240P	GTCCCCCCTTGCC	.	PASS	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	37	6	40360465	40360465	+	Silent	SNP	A	A	G	rs3734557	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	64	104	0	0.537815	0	A|0.395;G|0.605	0.605	strong	.	LRFN2	133	.	NM_020737	exon3	c.T1587C	p.I529I	GCCCAGAATCTGG	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44110532	44110532	+	Silent	SNP	G	G	A	rs36076725	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	178	158	0	0.988889	0	A|0.143;C|0.000;G|0.856;T|0.000	0.143	strong	.	.	.	.	NM_001193466	exon13	c.C2751T	p.F917F	GGCGGCGAAGGCT	.	PASS	Atlas-SNP
ARMC10	83787	hgsc.bcm.edu	37	7	102715804	102715804	+	Missense_Mutation	SNP	C	C	T	rs7798381	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	8	5	0	0	0.625	.	C|0.933;T|0.067	0.067	strong	.	ARMC10	25	.	NM_001161012	exon1	c.C85T	p.R29W	CTGACCCGGGGTC	.	PASS	Atlas-SNP
RNF32	140545	hgsc.bcm.edu	37	7	156469179	156469179	+	Missense_Mutation	SNP	C	C	T	rs2302146	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	53	100	0	0.535354	0	C|0.600;T|0.400	0.400	strong	.	RNF32	77	.	NM_001184996	exon9	c.C919T	p.R307C	GGTCAGCGCGTGG	.	PASS	Atlas-SNP
PRPS2	5634	hgsc.bcm.edu	37	X	12809661	12809661	+	Silent	SNP	G	G	A	rs1731469	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	52	36	0	1	0	G|0.430;A|0.570	0.570	strong	.	PRPS2	41	.	NM_001039091	exon1	c.G45A	p.L15L	GGACCTGTCCCAG	.	PASS	Atlas-SNP
FAM211A	388341	hgsc.bcm.edu	37	17	16347001	16347001	+	Silent	SNP	C	C	T	rs200702301		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	34	75	0	0.492754	0	C|0.996;T|0.004	0.004	weak	.	FAM211A	21	.	NM_001113567	exon4	c.G936A	p.R312R	CCCTTCCCGGACC	.	PASS	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	37	12	122674780	122674780	+	Missense_Mutation	SNP	C	C	A	rs11060094	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	76	145	0	0.477987	0	C|0.865;A|0.135	0.135	strong	.	LRRC43	105	.	NM_001098519	exon5	c.C766A	p.Q256K	GTGCTGCAGGGAA	.	PASS	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	37	X	130410965	130410965	+	Silent	SNP	A	A	G	rs4830219	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	66	73	0	1	0	A|0.663;0|0.005	.	strong	.	IGSF1	231	.	NM_001170961	exon14	c.T2571C	p.Y857Y	AAAGTCATAATAT	.	PASS	Atlas-SNP
TNFRSF10A	8797	hgsc.bcm.edu	37	8	23049292	23049292	+	Missense_Mutation	SNP	C	C	T	rs2230229	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	72	0	1	0	C|0.120;T|0.880	0.880	strong	.	TNFRSF10A	40	.	NM_003844	exon10	c.G1322A	p.R441K	TTCTCTCTTGCAT	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32137901	32137901	+	Missense_Mutation	SNP	A	A	C	rs3759296	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	74	129	0	0.493333	0	A|0.986;G|0.014	.	alt	C12orf35,NS,carcinoma,0,1	.	.	1	NM_018169	exon4	c.A4012C	p.T1338P	ACAAAAACAGCTT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105411153	105411153	+	Silent	SNP	G	G	A	rs34499888	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	237	157	1	1	0.00636943	G|0.688;A|0.312	0.312	strong	AHNAK2_ENST00000333244,colon,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.C10635T	p.P3545P	GGGCACGGGGCCC	.	PASS	Atlas-SNP
CXCL16	58191	hgsc.bcm.edu	37	17	4638484	4638484	+	Silent	SNP	T	T	C	rs1876444	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	91	123	0	0.968085	0	T|0.485;C|0.515	0.515	strong	CXCL16_ENST00000293778,NS,carcinoma,0,1	CXCL16	30	1	NM_022059	exon4	c.A678G	p.P226P	CAGGACTGGCACT	.	PASS	Atlas-SNP
ZFP69	339559	hgsc.bcm.edu	37	1	40961449	40961449	+	Silent	SNP	T	T	C	rs3795348	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	52	82	0	0.477064	0	T|0.960;C|0.040	0.040	strong	.	.	.	.	NM_198494	exon6	c.T1299C	p.H433H	AATCCATACTGGG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179582537	179582537	+	Missense_Mutation	SNP	G	G	T	rs2627043	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	28	46	1	0.538462	0.0217391	G|0.606;T|0.394	0.394	strong	TTN_ENST00000356127,NS,carcinoma,+1,2	TTN	18412	2	NM_001267550	exon87	c.C25064A	p.A8355E	TTGCGCGCTGTAA	.	scavenged	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1272245	1272245	+	Missense_Mutation	SNP	C	C	T	rs2943511	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	451	217	360	1	0.481153	0.00277778	C|0.930;T|0.070	0.070	strong	MUC5B,colon,carcinoma,0,2	MUC5B	473	2	NM_002458	exon31	c.C14135T	p.T4712M	CCAGCACGGCCAC	.	PASS	Atlas-SNP
CPNE1	8904	hgsc.bcm.edu	37	20	34219480	34219480	+	Silent	SNP	G	G	A	rs2230219	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	34	60	0	0.5	0	G|0.969;A|0.031	0.031	strong	.	CPNE1	44	.	NM_003915	exon8	c.C663T	p.D221D	GTCACTGTCATAA	.	PASS	Atlas-SNP
KBTBD8	84541	hgsc.bcm.edu	37	3	67054649	67054649	+	Missense_Mutation	SNP	T	T	C	rs13096789	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	50	129	0	0.42735	0	C|0.097;N|0.000	0.097	strong	.	KBTBD8	101	.	NM_032505	exon3	c.T1258C	p.C420R	GAGAATTGTTGGA	.	PASS	Atlas-SNP
PALD1	27143	hgsc.bcm.edu	37	10	72326400	72326400	+	Missense_Mutation	SNP	G	G	A	rs10999406	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	33	43	0	0.6875	0	G|0.900;A|0.100	0.100	strong	.	.	.	.	NM_014431	exon20	c.G2482A	p.G828R	GAGAGCGGGGAGG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415745	105415745	+	Missense_Mutation	SNP	C	C	G	rs117379881	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	91	192	1	1	0.00520833	C|0.667;G|0.333	0.333	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G6043C	p.A2015P	TGGGTGCAGGCAC	.	PASS	Atlas-SNP
CNBD2	140894	hgsc.bcm.edu	37	20	34560609	34560609	+	Missense_Mutation	SNP	G	G	A	rs17347958	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	65	134	0	0.457746	0	G|0.966;A|0.034	0.034	strong	.	.	.	.	NM_080834	exon2	c.G110A	p.R37H	TGTTCCGCCAAGG	.	PASS	Atlas-SNP
VPS26B	112936	hgsc.bcm.edu	37	11	134109924	134109924	+	Silent	SNP	T	T	C	rs35378544	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	67	150	0	0.485507	0	T|0.963;C|0.037	0.037	strong	.	VPS26B	30	.	NM_052875	exon3	c.T420C	p.D140D	CAATGATGTTGTC	.	PASS	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53070121	53070121	+	Silent	SNP	T	T	G	rs698170	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	158	165	0	1	0	G|0.806;N|0.000	0.806	strong	.	KRT1	110	.	NM_006121	exon7	c.A1413C	p.T471T	CAGCTTTGTGTTC	.	PASS	Atlas-SNP
DMRT2	10655	hgsc.bcm.edu	37	9	1056959	1056959	+	Missense_Mutation	SNP	G	G	C	rs17641078	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	64	171	0	0.435374	0	G|0.896;C|0.104	0.104	strong	DMRT2_ENST00000302441,colon,carcinoma,0,2	DMRT2	70	2	NM_181872	exon4	c.G1372C	p.E458Q	AGCAAAGAAAACA	.	PASS	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	37	1	171085413	171085413	+	Missense_Mutation	SNP	C	C	T	rs149551557		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	2	125	0	0.0166667	0	C|1.000;T|0.000	0.000	weak	FMO3,NS,carcinoma,0,2	FMO3	73	2	NM_006894	exon8	c.C1249T	p.R417C	AAAAAGCGCAAAT	.	scavenged	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93640009	93640009	+	Silent	SNP	G	G	A	rs2290887	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	89	166	0	0.486339	0	G|0.824;A|0.176	0.176	strong	.	SYK	132	.	NM_003177	exon10	c.G1338A	p.L446L	GATGCTGGTTATG	.	PASS	Atlas-SNP
IRG1	730249	hgsc.bcm.edu	37	13	77531361	77531361	+	Silent	SNP	C	C	T	rs41287034	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	62	97	0	0.516667	0	C|0.960;T|0.040	0.040	strong	.	IRG1	1	.	NM_001258406	exon4	c.C675T	p.L225L	GGGTCTCCAAGGA	.	PASS	Atlas-SNP
GTF2F2	2963	hgsc.bcm.edu	37	13	45841502	45841502	+	Silent	SNP	G	G	A	rs7331090	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	45	99	0	0.483871	0	G|0.639;A|0.361	0.361	strong	.	GTF2F2	13	.	NM_004128	exon7	c.G621A	p.K207K	CACAAAGCAACCT	.	PASS	Atlas-SNP
ODF4	146852	hgsc.bcm.edu	37	17	8243469	8243469	+	Missense_Mutation	SNP	T	T	C	rs12943505	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	108	91	0	0.990826	0	T|0.790;C|0.210	0.210	strong	.	ODF4	23	.	NM_153007	exon1	c.T100C	p.W34R	GCAGGATGGGGCA	.	PASS	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	37	19	1005531	1005531	+	Silent	SNP	G	G	C	rs12973948	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	32	81	0	0.410256	0	C|0.264;G|0.736;T|0.000	0.264	strong	.	GRIN3B	46	.	NM_138690	exon3	c.G2031C	p.L677L	GGAGCTGTCGGGG	.	PASS	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65676617	65676617	+	Silent	SNP	T	T	C	rs2292933	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	39	81	0	0.433333	0	T|0.516;C|0.484	0.484	strong	IGDCC4,caecum,carcinoma,-1,1	IGDCC4	95	1	NM_020962	exon20	c.A3483G	p.P1161P	AGCCTCTGGAGGC	.	PASS	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	37	12	122817580	122817580	+	Missense_Mutation	SNP	A	A	G	rs17883517	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	256	101	238	0	0.394531	0	A|0.939;G|0.061	0.061	strong	.	CLIP1	126	.	NM_001247997	exon15	c.T2821C	p.S941P	GAGAAGAGTTATC	.	PASS	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	37	5	70800475	70800475	+	Missense_Mutation	SNP	C	C	T	rs3761966	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	282	279	254	1	0.989362	0.00393701	C|0.667;T|0.333	0.333	strong	.	BDP1	204	.	NM_018429	exon16	c.C2269T	p.R757C	CAATCGCGTAAAG	.	PASS	Atlas-SNP
WDR35	57539	hgsc.bcm.edu	37	2	20175312	20175312	+	Silent	SNP	G	G	A	rs34169020	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	66	119	0	0.47482	0	G|0.952;A|0.048	0.048	strong	.	WDR35	92	.	NM_020779	exon6	c.C549T	p.Y183Y	ATTATCGTAAATG	.	PASS	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	37	14	65209867	65209867	+	Missense_Mutation	SNP	C	C	T	rs229649	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	21	29	0	0.428571	0	C|0.906;T|0.094	0.094	strong	.	PLEKHG3	89	.	NM_015549	exon15	c.C2938T	p.R980W	TCCGCCCGGAGCC	.	PASS	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	37	15	86125304	86125304	+	Silent	SNP	C	C	T	rs7179919	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	22	46	0	0.578947	0	C|0.849;T|0.151	0.151	strong	.	AKAP13	394	.	NM_007200	exon7	c.C4005T	p.I1335I	GAAGATCATTTTA	.	PASS	Atlas-SNP
NPAS2	4862	hgsc.bcm.edu	37	2	101554236	101554236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	3	143	0	0.0218978	0	.	.	none	NPAS2,colon,carcinoma,0,1	NPAS2	88	1	NM_002518	exon5	c.G295T	p.A99S	ATTATCGCAGTGA	.	scavenged	Atlas-SNP
IRF2BP1	26145	hgsc.bcm.edu	37	19	46387503	46387503	+	Silent	SNP	T	T	C	rs3745926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	16	45	0	0.470588	0	T|0.681;C|0.319	0.319	strong	.	IRF2BP1	23	.	NM_015649	exon1	c.A1530G	p.L510L	GTCTTCTAGCCGC	.	PASS	Atlas-SNP
DAPP1	27071	hgsc.bcm.edu	37	4	100787233	100787233	+	Silent	SNP	C	C	A	rs77036069	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	39	94	0	0.4875	0	C|0.971;A|0.029	0.029	strong	.	DAPP1	47	.	NM_014395	exon8	c.C729A	p.T243T	AAAGACCGGAGTA	.	PASS	Atlas-SNP
MYLPF	29895	hgsc.bcm.edu	37	16	30387148	30387148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	48	101	0	0.448598	0	.	.	none	.	MYLPF	12	.	NM_013292	exon2	c.A11G	p.K4R	CACCCAAGAGGGC	.	PASS	Atlas-SNP
MED11	400569	hgsc.bcm.edu	37	17	4636385	4636385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	64	149	0	0.415584	0	.	.	none	.	MED11	5	.	NM_001001683	exon3	c.C257T	p.S86L	ACTCTTCGAGGAA	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1075920	1075920	+	Missense_Mutation	SNP	G	G	A	rs11825977	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	30	68	0	0.416667	0	G|0.851;A|0.149	0.149	strong	.	MUC2	614	.	NM_002457	exon2	c.G346A	p.V116M	GGGGCCGTGTGAG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412009	105412009	+	Missense_Mutation	SNP	A	A	G	rs28714612	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	68	171	0	1	0	A|0.454;G|0.546	0.546	strong	AHNAK2_ENST00000333244,NS,neuroblastoma,0,2	AHNAK2	719	2	NM_138420	exon7	c.T9779C	p.M3260T	ACATCCATCTTCG	.	PASS	Atlas-SNP
COBLL1	22837	hgsc.bcm.edu	37	2	165551201	165551201	+	Missense_Mutation	SNP	T	T	C	rs7607980	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	42	109	0	0.477273	0	T|0.872;C|0.128	0.128	strong	.	COBLL1	122	.	NM_014900	exon12	c.A2815G	p.N939D	CTTTATTTGTCAG	.	PASS	Atlas-SNP
SLC25A48	153328	hgsc.bcm.edu	37	5	135178142	135178142	+	Silent	SNP	A	A	G	rs6596270	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	42	82	0	0.424242	0	A|0.820;G|0.180	0.180	strong	.	SLC25A48	37	.	NM_145282	exon2	c.A84G	p.T28T	GGACACAGTCAAG	.	PASS	Atlas-SNP
SPATA22	84690	hgsc.bcm.edu	37	17	3352294	3352294	+	Missense_Mutation	SNP	A	A	G	rs1488689	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	136	265	0	0.552846	0	A|0.769;G|0.231	0.231	strong	.	SPATA22	49	.	NM_032598	exon6	c.T479C	p.I160T	TCAGGTATTCTTA	.	PASS	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	37	17	80136418	80136418	+	Missense_Mutation	SNP	C	C	T	rs7209474	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	21	47	0	0.5	0	C|0.422;N|0.002	.	strong	.	CCDC57	102	.	NM_198082	exon10	c.G1438A	p.V480M	GGGTCACGGCCTT	.	PASS	Atlas-SNP
OPA3	80207	hgsc.bcm.edu	37	19	46057081	46057081	+	Silent	SNP	A	A	G	rs3826860	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	38	47	0	0.622951	0	A|0.295;G|0.705	0.705	strong	OPA3_ENST00000263275,NS,carcinoma,0,1	OPA3	19	1	NM_025136	exon2	c.T231C	p.A77A	CAGCTCAGCTGCC	.	PASS	Atlas-SNP
HS3ST3A1	9955	hgsc.bcm.edu	37	17	13399616	13399616	+	Silent	SNP	A	A	T	rs62057033	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	383	245	406	0	0.639687	0	A|0.615;T|0.385	0.385	strong	.	HS3ST3A1	39	.	NM_006042	exon2	c.T1119A	p.P373P	GATCTCAGGATGG	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89807233	89807233	+	Silent	SNP	C	C	G	rs11649210	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	92	174	0	0.513967	0	C|0.892;G|0.108	0.108	strong	.	FANCA	99	.	NM_000135	exon38	c.G3807C	p.L1269L	TGACGACAGCAGG	.	PASS	Atlas-SNP
PSAPL1	768239	hgsc.bcm.edu	37	4	7435721	7435721	+	Missense_Mutation	SNP	C	C	T	rs6850206	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	60	38	0	1	0	C|0.871;T|0.129	0.129	strong	.	PSAPL1	51	.	NM_001085382	exon1	c.G886A	p.V296M	TGCACACCTCACA	.	PASS	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	37	21	37741352	37741352	+	Silent	SNP	G	G	A	rs61739936	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	61	116	0	0.403974	0	G|0.919;A|0.081	0.081	strong	MORC3,NS,carcinoma,+2,1	MORC3	78	1	NM_015358	exon15	c.G1686A	p.Q562Q	TAGTCAGTTTGAA	.	PASS	Atlas-SNP
PRSS1	5644	hgsc.bcm.edu	37	7	142458437	142458437	+	Silent	SNP	C	C	T	rs372637371		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	11	317	0	0.0547264	0	.	.	weak	PRSS1,NS,carcinoma,0,1	PRSS1	68	1	NM_002769	exon2	c.C72T	p.I24I	CAAGATCGTTGGG	.	scavenged	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	37	19	45490570	45490570	+	Silent	SNP	A	A	G	rs3786505	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	33	81	0	0.478261	0	A|0.596;G|0.404	0.404	strong	.	CLPTM1	109	.	NM_001294	exon8	c.A927G	p.P309P	CTGCCCACTCTCG	.	PASS	Atlas-SNP
PHF3	23469	hgsc.bcm.edu	37	6	64394121	64394121	+	Silent	SNP	A	A	G	rs35294942	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	59	129	0	0.522124	0	A|0.990;G|0.010	0.010	strong	.	PHF3	191	.	NM_015153	exon3	c.A498G	p.V166V	GACTGTATCTACT	.	PASS	Atlas-SNP
SLC39A7	7922	hgsc.bcm.edu	37	6	33169895	33169895	+	Silent	SNP	C	C	G	rs1547387	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	109	189	0	0.511737	0	C|0.881;G|0.119	0.119	strong	.	SLC39A7	32	.	NM_006979	exon3	c.C627G	p.S209S	ACACTCCCACAGT	.	PASS	Atlas-SNP
TRAF3IP1	26146	hgsc.bcm.edu	37	2	239237388	239237388	+	Missense_Mutation	SNP	G	G	A	rs61742338	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	68	134	0	0.503704	0	G|0.971;A|0.029	0.029	strong	.	TRAF3IP1	58	.	NM_015650	exon4	c.G416A	p.R139Q	AAGGCCGGGCCTC	.	PASS	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	37	9	139326304	139326304	+	Silent	SNP	G	G	A	rs10870188	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	62	96	0	0.639175	0	G|0.898;A|0.102	0.102	strong	INPP5E,NS,carcinoma,0,1	INPP5E	18	1	NM_019892	exon7	c.C1521T	p.H507H	CTGGTCGTGCTGC	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	37	4	13615174	13615174	+	Missense_Mutation	SNP	G	G	A	rs2035820	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	324	162	285	0	0.5	0	G|0.852;A|0.148	0.148	strong	BOD1L,NS,carcinoma,+1,1	.	.	1	NM_148894	exon5	c.C1286T	p.T429M	TCAGACGTTACAA	.	PASS	Atlas-SNP
OR10H2	26538	hgsc.bcm.edu	37	19	15839081	15839081	+	Silent	SNP	C	C	T	rs2067083	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	338	141	390	0	0.41716	0	C|0.708;T|0.292	0.292	strong	.	OR10H2	59	.	NM_013939	exon1	c.C228T	p.A76A	CGTGGCCATCATC	.	PASS	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	37	19	36352024	36352024	+	Missense_Mutation	SNP	G	G	A	rs35423326	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	28	41	0	0.474576	0	G|0.972;A|0.028	0.028	strong	.	KIRREL2	170	.	NM_199180	exon9	c.G1057A	p.V353M	TCGCAGGTGCTGG	.	PASS	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73550117	73550117	+	Missense_Mutation	SNP	C	C	G	rs11592462	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	40	91	0	0.470588	0	C|0.672;G|0.328	0.328	strong	.	CDH23	365	.	NM_022124	exon44	c.C5996G	p.T1999S	TGGTGACCTACCA	.	PASS	Atlas-SNP
RELL2	285613	hgsc.bcm.edu	37	5	141019830	141019830	+	Missense_Mutation	SNP	C	C	G	rs11742646	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	42	55	0	0.518519	0	C|0.826;G|0.174	0.174	strong	.	RELL2	24	.	NM_173828	exon5	c.C847G	p.Q283E	AATGGGCAGCCAA	.	PASS	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53854948	53854948	+	Silent	SNP	A	A	C	rs73935563	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	23	37	0	0.489362	0	A|0.955;C|0.045	0.045	strong	.	ZNF845	101	.	NM_138374	exon4	c.A1020C	p.S340S	AACGTCATACCTT	.	PASS	Atlas-SNP
OGDHL	55753	hgsc.bcm.edu	37	10	50950976	50950976	+	Missense_Mutation	SNP	G	G	A	rs11101224	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	76	0	1	0	G|0.792;A|0.208	0.208	strong	.	OGDHL	149	.	NM_018245	exon15	c.C1910T	p.T637M	TCCACCGTCCGGT	.	PASS	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	37	19	53959804	53959804	+	Silent	SNP	T	T	C	rs4803129	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	23	38	0	0.418182	0	T|0.823;C|0.177	0.177	strong	ZNF761,NS,carcinoma,0,1	ZNF761	104	1	NM_001008401	exon7	c.T2043C	p.H681H	CCATCATAGACTT	.	PASS	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	37	11	5068177	5068177	+	Missense_Mutation	SNP	A	A	T	rs2500018	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	277	144	239	0	0.519856	0	A|0.494;T|0.506	0.506	strong	OR52J3,NS,carcinoma,-1,1	OR52J3	77	1	NM_001001916	exon1	c.A422T	p.Q141L	CATCCCAAGTGTT	.	PASS	Atlas-SNP
HAP1	9001	hgsc.bcm.edu	37	17	39884065	39884065	+	Missense_Mutation	SNP	C	C	A	rs35612698	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	20	64	0	0.363636	0	C|0.692;A|0.308	0.308	strong	.	HAP1	48	.	NM_177977	exon8	c.G1224T	p.L408F	CTTCTGCAACTTT	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201094	24201094	+	Silent	SNP	G	G	C	rs2229581	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	98	233	0	0.460094	0	G|0.370;C|0.630	0.630	strong	CNR2,NS,carcinoma,0,1	CNR2	78	1	NM_001841	exon2	c.C1014G	p.T338T	TGTCTCGGTGACT	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79086883	79086883	+	Missense_Mutation	SNP	G	G	A	rs1129770	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	32	99	0	0.470588	0	G|0.884;A|0.116	0.116	strong	.	CMYA5	643	.	NM_153610	exon11	c.G11780A	p.R3927Q	GGAGACGGCTGAC	.	PASS	Atlas-SNP
ZFYVE1	53349	hgsc.bcm.edu	37	14	73465003	73465003	+	Silent	SNP	A	A	G	rs997667	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	24	33	0	0.585366	0	A|0.678;G|0.322	0.322	strong	.	ZFYVE1	67	.	NM_021260	exon3	c.T504C	p.F168F	TCTAATAAAGTCT	.	PASS	Atlas-SNP
TPH2	121278	hgsc.bcm.edu	37	12	72372862	72372862	+	Silent	SNP	A	A	G	rs7305115	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	51	77	0	0.980769	0	A|0.439;G|0.561	0.561	strong	TPH2,colon,carcinoma,+1,1	TPH2	81	1	NM_173353	exon7	c.A936G	p.P312P	CACCCCAGAACCG	.	PASS	Atlas-SNP
DSC3	1825	hgsc.bcm.edu	37	18	28610988	28610988	+	Missense_Mutation	SNP	C	C	T	rs276938	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	136	136	1	1	0.00735294	T|0.384;G|0.001	0.384	strong	.	DSC3	225	.	NM_024423	exon3	c.G305A	p.R102K	TGTTTCCTTTTGT	.	PASS	Atlas-SNP
GIMAP7	168537	hgsc.bcm.edu	37	7	150217335	150217335	+	Silent	SNP	G	G	T	rs3735079	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	30	64	0	0.361446	0	G|0.893;T|0.107	0.107	strong	.	GIMAP7	47	.	NM_153236	exon2	c.G273T	p.G91G	CCCAGGGCCCCAT	.	PASS	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	37	10	72520567	72520567	+	Silent	SNP	A	A	G	rs10823616	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	69	68	0	1	0	A|0.756;G|0.244	0.244	strong	.	ADAMTS14	148	.	NM_139155	exon22	c.A3639G	p.R1213R	CCTGAGACATCCC	.	PASS	Atlas-SNP
STARD3	10948	hgsc.bcm.edu	37	17	37815749	37815749	+	Silent	SNP	G	G	A	rs73296109	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	35	78	0	0.411765	0	A|0.046;C|0.000;G|0.954;T|0.000	0.046	strong	STARD3,colon,carcinoma,0,1	STARD3	33	1	NM_006804	exon9	c.G738A	p.T246T	GGCCACGGCAGTG	.	PASS	Atlas-SNP
CCDC157	550631	hgsc.bcm.edu	37	22	30772686	30772686	+	Silent	SNP	C	C	T	rs2286442	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	77	107	0	0.496774	0	C|0.898;T|0.102	0.102	strong	.	CCDC157	86	.	NM_001017437	exon12	c.C2211T	p.G737G	ACCTGGCCGGGGA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152277822	152277822	+	Silent	SNP	T	T	C	rs3126069	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	254	28	401	1	0.110236	0.00249377	T|0.777;C|0.223	0.223	strong	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.A9540G	p.S3180S	GTGACGTGACACT	.	scavenged	Atlas-SNP
SLC30A4	7782	hgsc.bcm.edu	37	15	45779810	45779810	+	Silent	SNP	G	G	A	rs2453531	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	63	0	1	0	G|0.240;A|0.760	0.760	strong	.	SLC30A4	25	.	NM_013309	exon6	c.C915T	p.D305D	GATGGGGTCAGCA	.	PASS	Atlas-SNP
GLRA3	8001	hgsc.bcm.edu	37	4	175598280	175598280	+	Silent	SNP	A	A	G	rs12648678	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	71	133	0	0.452229	0	A|0.807;G|0.193	0.193	strong	GLRA3,NS,carcinoma,0,1	GLRA3	76	1	NM_001042543	exon7	c.T876C	p.T292T	TAGCACAGTGGTT	.	PASS	Atlas-SNP
MTMR10	54893	hgsc.bcm.edu	37	15	31246972	31246972	+	Missense_Mutation	SNP	C	C	T	rs142149917	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	58	76	0	0.513274	0	C|0.996;T|0.004	0.004	strong	MTMR10_ENST00000435680,NS,carcinoma,0,2	MTMR10	74	2	NM_017762	exon10	c.G1060A	p.V354I	CATTAACGCATAG	.	PASS	Atlas-SNP
LIMK2	3985	hgsc.bcm.edu	37	22	31663842	31663842	+	Silent	SNP	C	C	G	rs2228619	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	29	48	0	0.491525	0	C|0.189;G|0.811	0.811	strong	.	LIMK2	101	.	NM_005569	exon10	c.C1209G	p.L403L	GAACCTCCTGACA	.	PASS	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	37	21	37741439	37741439	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	4	232	0	0.0153846	0	.	.	none	MORC3,colon,carcinoma,+2,1	MORC3	78	1	NM_015358	exon15	c.T1773C	p.D591D	AGTAGATCATGAT	.	scavenged	Atlas-SNP
FRMD6	122786	hgsc.bcm.edu	37	14	52186966	52186966	+	Silent	SNP	G	G	A	rs2277495	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	31	66	0	0.455882	0	G|0.751;C|0.000;A|0.249	0.249	strong	.	FRMD6	100	.	NM_001267046	exon11	c.G1218A	p.T406T	GGACACGGGGCCA	.	PASS	Atlas-SNP
FAM118A	55007	hgsc.bcm.edu	37	22	45723807	45723807	+	Missense_Mutation	SNP	G	G	C	rs11556482	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	74	128	0	0.556391	0	G|0.539;C|0.461	0.461	strong	.	FAM118A	32	.	NM_017911	exon4	c.G385C	p.V129L	AGTCCTGTGGTGC	.	PASS	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	37	13	75866284	75866284	+	Missense_Mutation	SNP	G	G	A	rs9600455	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	31	91	0	0.364706	0	G|0.929;A|0.071	0.071	strong	TBC1D4,NS,lymphoid_neoplasm,0,1	TBC1D4	142	1	NM_014832	exon19	c.C3440T	p.T1147M	GGTAGCGTGTTTT	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254058	39254058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	9	49	0	0.101124	0	.	.	none	KRTAP4-8,NS,carcinoma,0,2	KRTAP4-8	57	2	NM_031960	exon1	c.C279A	p.S93R	GCAGCAGCTAGGG	.	scavenged	Atlas-SNP
TSPEAR	54084	hgsc.bcm.edu	37	21	45948342	45948342	+	Silent	SNP	C	C	T	rs201202780		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	26	56	0	0.351351	0	C|0.999;T|0.001	0.001	weak	.	TSPEAR	110	.	NM_144991	exon6	c.G915A	p.V305V	TGCTAACACGGAG	.	PASS	Atlas-SNP
NOL8	55035	hgsc.bcm.edu	37	9	95068046	95068046	+	Silent	SNP	C	C	T	rs1133908	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	256	131	224	1	0.511719	0.00446429	T|0.382;G|0.057	0.382	strong	.	NOL8	118	.	NM_017948	exon12	c.G2892A	p.K964K	TTTTGGCTTATCA	.	PASS	Atlas-SNP
FRMD4A	55691	hgsc.bcm.edu	37	10	13779898	13779898	+	Silent	SNP	C	C	T	rs61755072	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	68	147	0	0.492754	0	C|0.994;T|0.006	0.006	strong	.	FRMD4A	108	.	NM_018027	exon12	c.G705A	p.L235L	GTAGCTCAGGCCC	.	PASS	Atlas-SNP
TAS2R7	50837	hgsc.bcm.edu	37	12	10954258	10954258	+	Missense_Mutation	SNP	C	C	T	rs619381	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	29	86	0	0.58	0	C|0.919;T|0.081	0.081	strong	TAS2R7,NS,carcinoma,0,1	TAS2R7	35	1	NM_023919	exon1	c.G912A	p.M304I	AATAGACATTACT	.	PASS	Atlas-SNP
SPRR2F	6705	hgsc.bcm.edu	37	1	153085152	153085152	+	Missense_Mutation	SNP	C	C	T	rs79214550		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	22	74	0	0.181818	0	.	.	weak	SPRR2F,caecum,carcinoma,+2,1	SPRR2F	12	1	NM_001014450	exon2	c.G58A	p.A20T	TTGGCGCGGGGCA	.	scavenged	Atlas-SNP
GP1BA	2811	hgsc.bcm.edu	37	17	4837243	4837243	+	Silent	SNP	C	C	T	rs41466145	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	21	29	0	0.583333	0	C|0.882;T|0.118	0.118	strong	.	GP1BA	53	.	NM_000173	exon2	c.C1344T	p.T448T	CCCGACCACCCCG	.	PASS	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	37	3	167051726	167051726	+	Silent	SNP	A	A	G	rs10936530	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	61	137	1	0.592233	0.00729927	A|0.557;G|0.443	0.443	strong	ZBBX_ENST00000455345,NS,carcinoma,-2,2	ZBBX	299	2	NM_024687	exon10	c.T576C	p.F192F	CTTTATAAACTGA	.	scavenged	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	37	7	147092861	147092861	+	Silent	SNP	G	G	A	rs34592169	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	117	112	0	0.991525	0	G|0.845;A|0.155	0.155	strong	CNTNAP2,colon,carcinoma,0,1	CNTNAP2	392	1	NM_014141	exon10	c.G1659A	p.A553A	GTGTGCGATCATA	.	PASS	Atlas-SNP
RRP1	8568	hgsc.bcm.edu	37	21	45220483	45220483	+	Missense_Mutation	SNP	A	A	G	rs915770	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	56	125	0	0.482759	0	A|0.767;G|0.233	0.233	strong	RRP1,NS,carcinoma,0,1	RRP1	23	1	NM_003683	exon10	c.A977G	p.K326R	TCTACAAAGTGAT	.	PASS	Atlas-SNP
GAS8	2622	hgsc.bcm.edu	37	16	90103659	90103659	+	Missense_Mutation	SNP	G	G	A	rs17178299	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	97	195	0	0.489899	0	G|0.958;A|0.042	0.042	strong	.	GAS8	29	.	NM_001481	exon7	c.G776A	p.R259Q	ACATGCGGAAGAA	.	PASS	Atlas-SNP
NKTR	4820	hgsc.bcm.edu	37	3	42679497	42679497	+	Silent	SNP	C	C	T	rs35890296	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	37	77	0	0.406593	0	C|0.823;T|0.177	0.177	strong	.	NKTR	116	.	NM_005385	exon13	c.C2301T	p.S767S	AAATAGCGTTTCA	.	PASS	Atlas-SNP
PLEKHA3	65977	hgsc.bcm.edu	37	2	179358665	179358665	+	Silent	SNP	A	A	G	rs41461050	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	248	118	211	1	0.475806	0.00473934	A|1.000;|0.000	.	weak	PLEKHA3,NS,carcinoma,+1,1	PLEKHA3	25	1	NM_019091	exon4	c.A399G	p.T133T	TCATACAATACAG	.	PASS	Atlas-SNP
CCDC144NL	339184	hgsc.bcm.edu	37	17	20798992	20798992	+	Silent	SNP	C	C	T	rs8073465	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	91	204	0	0.4375	0	C|0.883;T|0.117	0.117	strong	.	CCDC144NL	34	.	NM_001004306	exon1	c.G342A	p.K114K	TTACCTCTTCTTC	.	PASS	Atlas-SNP
OR8G5	219865	hgsc.bcm.edu	37	11	124135215	124135215	+	Missense_Mutation	SNP	T	T	G	rs11219544	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	298	146	296	0	0.489933	0	T|0.947;G|0.053	0.053	strong	.	.	.	.	NM_001005198	exon1	c.T493G	p.L165V	AGCCCCTTGCTGT	.	PASS	Atlas-SNP
PTGR2	145482	hgsc.bcm.edu	37	14	74340797	74340797	+	Silent	SNP	A	A	T	rs11159042	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	69	114	0	0.466216	0	A|0.507;N|0.000	.	strong	.	PTGR2	21	.	NM_152444	exon4	c.A228T	p.G76G	TGATGGAGGAGGT	.	PASS	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	37	14	24807221	24807221	+	Silent	SNP	G	G	A	rs56337365	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	65	130	0	0.471014	0	G|0.933;A|0.067	0.067	strong	.	RIPK3	43	.	NM_006871	exon6	c.C690T	p.Y230Y	TGCTTCGTACACG	.	PASS	Atlas-SNP
KDM5A	5927	hgsc.bcm.edu	37	12	406292	406292	+	Silent	SNP	G	G	A	rs2229351	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	27	39	0	0.442623	0	T|0.139;G|0.444;C|0.211;A|0.206	0.206	strong	KDM5A_ENST00000399788,trunk,malignant_melanoma,-1,2	KDM5A	307	2	NM_001042603	exon25	c.C4149T	p.S1383S	CTCCTCGGATTTG	.	PASS	Atlas-SNP
SLC7A3	84889	hgsc.bcm.edu	37	X	70146398	70146398	+	Silent	SNP	A	A	G	rs4360450	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	119	110	0	1	0	A|0.284;G|0.716	0.716	strong	.	SLC7A3	76	.	NM_032803	exon10	c.T1599C	p.S533S	AGTGGAACTCTGT	.	PASS	Atlas-SNP
ZNF133	7692	hgsc.bcm.edu	37	20	18295861	18295861	+	Silent	SNP	G	G	A	rs2228274	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	54	104	0	0.446281	0	G|0.928;A|0.072	0.072	strong	.	ZNF133	63	.	NM_001083330	exon4	c.G363A	p.P121P	GGATCCGGGCCCA	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240794	39240794	+	Silent	SNP	C	C	A	rs9894106	by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	11	19	0	0.189655	0	.	.	weak	KRTAP4-7,NS,carcinoma,0,3	KRTAP4-7	49	3	NM_033061	exon1	c.C336A	p.P112P	CCGCCCCAGCTGC	.	scavenged	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	37	19	36258721	36258721	+	Missense_Mutation	SNP	C	C	T	rs73592448	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	47	82	0	0.479592	0	C|0.916;T|0.084	0.084	strong	.	C19orf55	39	.	NM_001039887	exon9	c.C974T	p.A325V	TGAAAGCCAAGGC	.	PASS	Atlas-SNP
UBQLNL	143630	hgsc.bcm.edu	37	11	5537045	5537045	+	Silent	SNP	T	T	G	rs872751	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	74	128	0	0.451219	0	T|0.688;G|0.312	0.312	strong	.	UBQLNL	74	.	NM_145053	exon1	c.A627C	p.P209P	AACTTCTGGGTTC	.	PASS	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65246623	65246623	+	Silent	SNP	T	T	C	rs1626923	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	167	136	1	0.994048	0.00735294	T|0.575;C|0.425	0.425	strong	SPTB_ENST00000542895,NS,malignant_melanoma,-1,6	SPTB	378	6	NM_001024858	exon20	c.A4293G	p.R1431R	CTCTTTTCGCACA	.	PASS	Atlas-SNP
CD48	962	hgsc.bcm.edu	37	1	160681508	160681508	+	Silent	SNP	G	G	A	rs11541827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	326	166	363	0	0.509202	0	G|0.986;A|0.014	0.014	strong	.	CD48	31	.	NM_001256030	exon1	c.C46T	p.L16L	GCAGCAGTAGCAA	.	PASS	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	37	13	42385446	42385446	+	Missense_Mutation	SNP	T	T	C	rs9562353	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	36	94	0	0.48	0	T|0.931;C|0.069	0.069	strong	KIAA0564,lymph_node,lymphoid_neoplasm,0,1	.	.	1	NM_015058	exon17	c.A1978G	p.R660G	GTTGTCTGGTAGA	.	PASS	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4199083	4199083	+	Missense_Mutation	SNP	T	T	G	rs34666677	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	199	211	1	0.99005	0.00473934	T|0.925;G|0.075	0.075	strong	.	OTOP1	118	.	NM_177998	exon5	c.A1478C	p.K493T	ATGTCCTTGCCCT	.	PASS	Atlas-SNP
OR11H6	122748	hgsc.bcm.edu	37	14	20691888	20691888	+	Missense_Mutation	SNP	C	C	A	rs10140652	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	72	160	0	0.455696	0	C|0.909;A|0.091	0.091	strong	.	OR11H6	60	.	NM_001004480	exon1	c.C20A	p.S7Y	TTCATTCTTTGGT	.	PASS	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	37	19	53116939	53116939	+	Silent	SNP	C	C	T	rs78207921	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	22	94	0	0.338462	0	.	.	weak	.	ZNF83	73	.	NM_018300	exon3	c.G879A	p.E293E	GCCACACTCATTA	.	PASS	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	37	21	44839263	44839263	+	Missense_Mutation	SNP	C	C	T	rs34987632	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	68	130	0	0.472222	0	C|0.996;T|0.004	0.004	strong	.	SIK1	65	.	NM_173354	exon10	c.G1215A	p.M405I	ACAGTCCATCTCG	.	PASS	Atlas-SNP
MTNR1A	4543	hgsc.bcm.edu	37	4	187454972	187454972	+	Silent	SNP	T	T	C	rs8192550	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	86	191	0	0.472527	0	T|0.964;C|0.036	0.036	strong	.	MTNR1A	46	.	NM_005958	exon2	c.A924G	p.R308R	TATAATTCTCCTG	.	PASS	Atlas-SNP
OR4K14	122740	hgsc.bcm.edu	37	14	20482919	20482919	+	Missense_Mutation	SNP	A	A	C	rs17308108	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	32	88	0	0.507937	0	A|0.922;C|0.078	0.078	strong	.	OR4K14	86	.	NM_001004712	exon1	c.T434G	p.L145R	AGCACCAGCCTGA	.	PASS	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	37	13	37679268	37679268	+	Missense_Mutation	SNP	G	G	T	rs9576175	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	78	53	0	0.987342	0	G|0.444;T|0.556	0.556	strong	CSNK1A1L,NS,carcinoma,0,1	CSNK1A1L	69	1	NM_145203	exon1	c.C126A	p.D42E	TGCTACGTCCTCG	.	PASS	Atlas-SNP
PLCG2	5336	hgsc.bcm.edu	37	16	81819768	81819768	+	Silent	SNP	T	T	C	rs1143685	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	103	88	0	0.990385	0	T|0.273;C|0.727	0.727	strong	PLCG2_ENST00000359376,NS,carcinoma,+2,2	PLCG2	276	2	NM_002661	exon2	c.T174C	p.A58A	GACCGCTGACAAG	.	PASS	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	37	7	20180717	20180717	+	Missense_Mutation	SNP	C	C	G	rs3735615	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	42	34	0	1	0	C|0.430;G|0.570	0.570	strong	MACC1,tonsil,carcinoma,0,1	MACC1	99	1	NM_182762	exon7	c.G2411C	p.R804T	ACATCTCTGTAGT	.	PASS	Atlas-SNP
INHA	3623	hgsc.bcm.edu	37	2	220439916	220439916	+	Missense_Mutation	SNP	G	G	A	rs12720062	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	80	144	0	0.462428	0	G|0.983;A|0.017	0.017	strong	.	INHA	30	.	NM_002191	exon2	c.G769A	p.A257T	GAACCGGCTGCCC	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790881	4790881	+	Silent	SNP	A	A	G	rs111736749	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	46	89	0	0.45098	0	A|0.903;G|0.097	0.097	strong	OR51F1,NS,carcinoma,-2,1	OR51F1	60	1	NM_001004752	exon1	c.T267C	p.F89F	TGCCTCAAACCAG	.	PASS	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	37	8	27277537	27277537	+	Silent	SNP	G	G	A	rs1030526	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	94	180	0	0.519337	0	G|0.621;A|0.379	0.379	strong	.	PTK2B	304	.	NM_173174	exon8	c.G330A	p.T110T	GATGACGGTGGGT	.	PASS	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53856730	53856730	+	Silent	SNP	G	G	A	rs201351032		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	13	99	1	0.0984849	0.010101	.	.	weak	ZNF845,NS,carcinoma,0,5	ZNF845	101	5	NM_138374	exon4	c.G2802A	p.K934K	TCATAAGACAATT	.	scavenged	Atlas-SNP
TC2N	123036	hgsc.bcm.edu	37	14	92251587	92251587	+	Silent	SNP	A	A	G	rs61990064	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	19	62	0	0.287879	0	A|0.864;G|0.136	0.136	strong	TC2N,NS,adenoma,0,2	TC2N	49	2	NM_001128596	exon11	c.T1281C	p.L427L	CTGTATAAGTGGA	.	PASS	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	37	10	134942166	134942166	+	Silent	SNP	A	A	G	rs2806452	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	53	78	0	1	0	A|0.559;G|0.441	0.441	strong	.	GPR123	118	.	NM_001083909	exon7	c.A834G	p.S278S	GGTGTCACAGGGC	.	PASS	Atlas-SNP
KRT6C	286887	hgsc.bcm.edu	37	12	52866060	52866060	+	Missense_Mutation	SNP	C	C	T	rs11608915	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	267	123	134	0	0.460674	0	C|0.677;T|0.323	0.323	strong	.	KRT6C	55	.	NM_173086	exon2	c.G545A	p.R182Q	AGGAACCGCACCT	.	PASS	Atlas-SNP
IL6R	3570	hgsc.bcm.edu	37	1	154401679	154401679	+	Silent	SNP	G	G	A	rs2228144	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	54	129	0	0.418605	0	G|0.876;A|0.124	0.124	strong	.	IL6R	47	.	NM_000565	exon2	c.G93A	p.A31A	GGTGGCGAGAGGC	.	PASS	Atlas-SNP
ARMS2	387715	hgsc.bcm.edu	37	10	124214251	124214251	+	Missense_Mutation	SNP	G	G	A	rs10490923	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	58	129	0	0.446154	0	G|0.919;A|0.081	0.081	strong	ARMS2_ENST00000528446,caecum,carcinoma,0,2	ARMS2	7	2	NM_001099667	exon1	c.G8A	p.R3H	TGCTGCGCCTATA	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150905398	150905398	+	Silent	SNP	C	C	T	rs3734051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	39	107	0	0.549296	0	C|0.776;N|0.000	.	strong	FAT2,colon,carcinoma,-1,2	FAT2	465	2	NM_001447	exon17	c.G10437A	p.P3479P	TCCATCCGGGGTC	.	PASS	Atlas-SNP
ZNFX1	57169	hgsc.bcm.edu	37	20	47874005	47874005	+	Silent	SNP	A	A	G	rs3021	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	73	185	0	0.386243	0	A|0.821;G|0.179;T|0.000	0.179	strong	.	ZNFX1	194	.	NM_021035	exon8	c.T2613C	p.H871H	GCCACAATGGTCT	.	PASS	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	37	3	1262474	1262474	+	Silent	SNP	T	T	C	rs2013828	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	98	198	0	0.492462	0	T|0.584;C|0.416	0.416	strong	.	CNTN6	245	.	NM_014461	exon3	c.T159C	p.N53N	TGCTAATGGTTAC	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917842	2917842	+	Missense_Mutation	SNP	G	G	A	rs149690257		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	4	139	1	0.0263158	0.00719424	.	.	weak	ZNF57,NS,carcinoma,0,3	ZNF57	57	3	NM_173480	exon4	c.G1223A	p.R408Q	CATTCCGAGGTCA	.	scavenged	Atlas-SNP
C3orf20	84077	hgsc.bcm.edu	37	3	14755572	14755572	+	Missense_Mutation	SNP	A	A	G	rs6765537	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	67	180	0	0.421384	0	A|0.590;G|0.410	0.410	strong	.	C3orf20	109	.	NM_032137	exon8	c.A1219G	p.I407V	AGAACCATCACCT	.	PASS	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	37	3	193209178	193209178	+	Missense_Mutation	SNP	T	T	C	rs6788448	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	44	73	0	0.478261	0	T|0.559;C|0.441	0.441	strong	.	ATP13A4	154	.	NM_032279	exon6	c.A543G	p.I181M	CCCACATATTAAC	.	PASS	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	37	21	32638550	32638550	+	Missense_Mutation	SNP	C	C	T	rs2070418	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	55	109	0	0.539216	0	C|0.874;A|0.001	.	strong	.	TIAM1	522	.	NM_003253	exon5	c.G739A	p.G247R	GCCCCCCGTTTGC	.	PASS	Atlas-SNP
ACHE	43	hgsc.bcm.edu	37	7	100490077	100490077	+	Silent	SNP	G	G	A	rs7636	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	50	96	0	0.485437	0	G|0.887;A|0.113	0.113	strong	.	ACHE	80	.	NM_000665	exon3	c.C1431T	p.P477P	GCCGTGGGGCACC	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10355763	10355763	+	Missense_Mutation	SNP	T	T	C	rs917361	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	100	194	0	0.50505	0	C|0.466;N|0.000	0.466	strong	.	MYH4	349	.	NM_017533	exon26	c.A3318G	p.I1106M	TAGCTGTATTGCA	.	PASS	Atlas-SNP
C10orf54	64115	hgsc.bcm.edu	37	10	73533124	73533124	+	Missense_Mutation	SNP	C	C	T	rs146887444	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	285	145	284	0	0.508772	0	C|0.999;T|0.001	0.001	strong	.	C10orf54	29	.	NM_022153	exon1	c.G73A	p.A25T	GGGACGCAGCCAG	.	PASS	Atlas-SNP
USP8	9101	hgsc.bcm.edu	37	15	50769520	50769520	+	Missense_Mutation	SNP	G	G	A	rs61733869	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	63	115	0	0.477273	0	G|0.971;A|0.029	0.029	strong	.	USP8	90	.	NM_001128610	exon10	c.G1042A	p.A348T	AAACCTGCTGCCC	.	PASS	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56088780	56088780	+	Silent	SNP	G	G	A	rs75497420	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	24	143	0	0.176471	0	G|0.957;A|0.044	0.044	strong	.	PSPH	23	.	NM_004577	exon4	c.C126T	p.D42D	CACCGCGTCCTCA	.	PASS	Atlas-SNP
BCR	613	hgsc.bcm.edu	37	22	23523630	23523630	+	Silent	SNP	C	C	A	rs5751602	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	9	32	0	0.45	0	C|0.720;A|0.280	0.280	strong	.	BCR	74	.	NM_021574	exon1	c.C483A	p.I161I	GCGGATCCGCAAG	.	PASS	Atlas-SNP
CS	1431	hgsc.bcm.edu	37	12	56679751	56679751	+	Silent	SNP	A	A	G	rs1802236	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	93	194	0	0.534483	0	A|0.962;G|0.038	0.038	strong	.	CS	44	.	NM_004077	exon3	c.T150C	p.T50T	CCTGAAAGTCTTA	.	PASS	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	37	15	91010776	91010776	+	Silent	SNP	T	T	C	rs1505936	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	57	96	0	0.508929	0	T|0.557;C|0.442	0.442	strong	.	IQGAP1	140	.	NM_003870	exon18	c.T2130C	p.P710P	TGAACCTCCAAAT	.	PASS	Atlas-SNP
PAPOLB	56903	hgsc.bcm.edu	37	7	4901385	4901385	+	Missense_Mutation	SNP	A	A	C	rs3750009	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	19	34	0	1	0	A|0.534;C|0.466	0.466	strong	.	PAPOLB	93	.	NM_020144	exon1	c.T57G	p.N19K	GTAGCGATTCGGC	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24721946	24721946	+	Silent	SNP	A	A	C	rs2274831	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	42	81	0	0.518519	0	A|0.794;C|0.206	0.206	strong	.	KIAA1217	235	.	NM_019590	exon4	c.A576C	p.G192G	GTATGGAGATGAA	.	PASS	Atlas-SNP
INA	9118	hgsc.bcm.edu	37	10	105037958	105037958	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	3	129	0	0.02	0	.	.	none	INA,NS,carcinoma,0,2	INA	34	2	NM_032727	exon1	c.C990T	p.R330R	CCTGCGCGGGGCC	.	scavenged	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	86790997	86790997	+	Missense_Mutation	SNP	G	G	A	rs149477284	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	58	98	0	0.504348	0	G|0.995;A|0.005	0.005	strong	.	AGBL1	151	.	NM_152336	exon6	c.G484A	p.V162M	GCCTACGTGCAGA	.	PASS	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23527472	23527472	+	Missense_Mutation	SNP	G	G	A	rs112666693		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	6	148	1	0.0402685	0.00675676	G|0.500;A|0.500	0.500	weak	PRDM9,NS,carcinoma,0,2	PRDM9	344	2	NM_020227	exon11	c.G2275A	p.D759N	TTTCGCGATAAGT	.	scavenged	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	37	7	131194255	131194255	+	Missense_Mutation	SNP	G	G	C	rs35893129	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	98	220	1	0.47343	0.00454545	G|0.949;C|0.051	0.051	strong	.	PODXL	53	.	NM_001018111	exon4	c.C892G	p.P298A	TCGTGGGCTGCAC	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89809319	89809319	+	Silent	SNP	T	T	C	rs1800358	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	28	62	0	0.444444	0	T|0.874;C|0.126	0.126	strong	.	FANCA	99	.	NM_000135	exon37	c.A3654G	p.P1218P	GGGTGCTGGGGAG	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144945792	144945792	+	Missense_Mutation	SNP	T	T	C	rs13255110	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	43	57	1	0.443299	0.0175439	T|0.461;C|0.539	0.539	strong	EPPK1,NS,carcinoma,0,1	EPPK1	199	1	NM_031308	exon1	c.A1630G	p.K544E	TCAGCTTAGCGGC	.	scavenged	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56088902	56088902	+	Missense_Mutation	SNP	C	C	T	rs77329757	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	15	136	0	0.0909091	0	C|0.996;T|0.004	0.004	strong	PSPH,rectum,carcinoma,0,1	PSPH	23	1	NM_004577	exon4	c.G4A	p.V2I	GGGAGACCATCGC	.	scavenged	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	37	1	166958601	166958601	+	Silent	SNP	T	T	C	rs2296837	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	39	89	0	0.557143	0	T|0.682;G|0.000;C|0.317;A|0.000	0.317	strong	.	MAEL	95	.	NM_032858	exon1	c.T12C	p.R4R	GAACCGTAAGGCC	.	PASS	Atlas-SNP
ZNF142	7701	hgsc.bcm.edu	37	2	219509618	219509618	+	Missense_Mutation	SNP	C	C	A	rs2230115	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	188	200	1	0.935323	0.005	C|0.484;A|0.516	0.516	strong	.	ZNF142	190	.	NM_001105537	exon8	c.G1621T	p.A541S	GTGGGGCCGGTGT	.	PASS	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	37	14	44974922	44974922	+	Missense_Mutation	SNP	A	A	T	rs3825632	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	75	125	0	0.986842	0	A|0.560;T|0.440	0.440	strong	FSCB,NS,carcinoma,0,1	FSCB	173	1	NM_032135	exon1	c.T1269A	p.D423E	CTGAACATCAGCA	.	PASS	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	41061715	41061715	+	Nonsense_Mutation	SNP	C	C	T	rs1023840	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	60	169	0	0.402685	0	C|0.821;T|0.179	0.179	strong	.	.	.	.	NM_173489	exon6	c.G572A	p.W191X	ATATACCAGAACA	.	PASS	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	37	1	43042703	43042703	+	Silent	SNP	C	C	T	rs12049046	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	36	101	0	0.444444	0	C|0.778;T|0.222	0.222	strong	.	CCDC30	78	.	NM_001080850	exon7	c.C868T	p.L290L	ATTGAACTAAAGC	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151970899	151970899	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	360	23	385	0	0.0638889	0	.	.	none	.	MLL3	1564	.	NM_170606	exon7	c.A903G	p.K301K	GGTACATTTCTCT	.	PASS	Atlas-SNP
BRD2	6046	hgsc.bcm.edu	37	6	32946133	32946133	+	Silent	SNP	T	T	C	rs206781	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	70	106	0	0.460526	0	T|0.705;C|0.295	0.295	strong	.	BRD2	70	.	NM_005104	exon10	c.T1809C	p.S603S	CCCTTCTGGCTTT	.	PASS	Atlas-SNP
CBY1	25776	hgsc.bcm.edu	37	22	39069181	39069181	+	Silent	SNP	T	T	C	rs3747174	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	31	67	0	0.54386	0	T|0.702;C|0.298	0.298	strong	.	CBY1	10	.	NM_001002880	exon6	c.T450C	p.A150A	CACTGCTGAATCC	.	PASS	Atlas-SNP
GJA4	2701	hgsc.bcm.edu	37	1	35260202	35260202	+	Missense_Mutation	SNP	G	G	A	rs41266431	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	23	46	0	0.522727	0	G|0.912;A|0.088	0.088	strong	.	GJA4	25	.	NM_002060	exon2	c.G388A	p.V130I	GCGGCCGTAGAGC	.	PASS	Atlas-SNP
APOBEC3H	164668	hgsc.bcm.edu	37	22	39497454	39497454	+	Missense_Mutation	SNP	G	G	C	rs139299	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	42	88	0	0.5	0	G|0.453;C|0.547	0.547	strong	.	APOBEC3H	28	.	NM_001166003	exon3	c.G363C	p.K121N	GCAGAAGGGGCTG	.	PASS	Atlas-SNP
AKR1B15	441282	hgsc.bcm.edu	37	7	134260595	134260595	+	Missense_Mutation	SNP	C	C	T	rs141101327	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	616	220	598	0	0.357143	0	C|0.991;T|0.009	0.009	strong	.	AKR1B15	105	.	NM_001080538	exon8	c.C659T	p.T220M	ACCTCACGCAGGA	.	PASS	Atlas-SNP
TULP1	7287	hgsc.bcm.edu	37	6	35477032	35477032	+	Missense_Mutation	SNP	A	A	G	rs2064317	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	34	106	0	0.386364	0	A|0.642;G|0.358	0.358	strong	TULP1,NS,carcinoma,0,1	TULP1	51	1	NM_003322	exon8	c.T776C	p.I259T	TTCTTTATCACCG	.	PASS	Atlas-SNP
R3HCC1L	27291	hgsc.bcm.edu	37	10	99969507	99969507	+	Missense_Mutation	SNP	C	C	T	rs35122894	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	45	91	0	0.483871	0	C|0.980;T|0.020	0.020	strong	.	R3HCC1L	3	.	NM_001256620	exon4	c.C1636T	p.P546S	TCTTTTCCTGATA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276626	152276626	+	Missense_Mutation	SNP	G	G	C	rs3126075	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	284	61	458	0	0.214789	0	G|0.716;C|0.284	0.284	strong	FLG,colon,carcinoma,-1,1	FLG	900	1	NM_002016	exon3	c.C10736G	p.T3579R	TGGGACGTGGGGT	.	scavenged	Atlas-SNP
ANKRD36	375248	hgsc.bcm.edu	37	2	97790211	97790211	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	247	8	228	7	0.0323887	0.0307018	.	.	none	ANKRD36_ENST00000420699,extremity,malignant_melanoma,0,2	ANKRD36	170	2	NM_001164315	exon5	c.A608T	p.H203L	TCATACATGCTGT	.	scavenged	Atlas-SNP
CATSPER4	378807	hgsc.bcm.edu	37	1	26526439	26526439	+	Missense_Mutation	SNP	A	A	G	rs17257155	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	66	120	0	0.5	0	A|0.836;G|0.164	0.164	strong	.	CATSPER4	59	.	NM_198137	exon7	c.A877G	p.I293V	ATCACCATCGGTG	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917287	2917287	+	Missense_Mutation	SNP	C	C	A	rs2288958	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	23	51	0	0.403509	0	C|0.581;A|0.419	0.419	strong	.	ZNF57	57	.	NM_173480	exon4	c.C668A	p.T223N	AGAAAACCTACAA	.	PASS	Atlas-SNP
IKBKE	9641	hgsc.bcm.edu	37	1	206669465	206669465	+	Missense_Mutation	SNP	C	C	T	rs3748022	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	67	141	0	0.478571	0	C|0.844;T|0.156	0.156	strong	IKBKE,NS,adenoma,0,1	IKBKE	77	1	NM_014002	exon22	c.C2138T	p.P713L	CAGCACCTCCTGA	.	PASS	Atlas-SNP
SGSH	6448	hgsc.bcm.edu	37	17	78184393	78184393	+	Missense_Mutation	SNP	C	C	T	rs7503034	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	50	68	0	0.549451	0	C|0.701;N|0.000	.	strong	.	SGSH	27	.	NM_000199	exon8	c.G1367A	p.R456H	GCAAAGCGCGGGT	.	PASS	Atlas-SNP
ZC3H3	23144	hgsc.bcm.edu	37	8	144522387	144522387	+	Nonsense_Mutation	SNP	G	G	T	rs2272754	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	37	90	0	0.435294	0	G|0.879;T|0.121	0.121	strong	.	ZC3H3	75	.	NM_015117	exon11	c.C2639A	p.S880X	GGGGATGAGGAGG	.	PASS	Atlas-SNP
NOM1	64434	hgsc.bcm.edu	37	7	156742749	156742749	+	Silent	SNP	G	G	A	rs6969196	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	6	11	0	0.315789	0	G|0.791;A|0.209	0.209	strong	.	NOM1	73	.	NM_138400	exon1	c.G318A	p.Q106Q	CGAACAGGGTCCC	.	PASS	Atlas-SNP
COG1	9382	hgsc.bcm.edu	37	17	71197323	71197323	+	Missense_Mutation	SNP	G	G	C	rs62621249	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	43	118	0	0.551282	0	G|0.935;C|0.065	0.065	strong	.	COG1	46	.	NM_018714	exon7	c.G1357C	p.E453Q	GAACTTGAAAGCA	.	PASS	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	37	9	134021630	134021630	+	Silent	SNP	A	A	G	rs2296710	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	138	138	0	0.978723	0	T|0.000;G|0.312;A|0.687	0.312	strong	NUP214,NS,carcinoma,0,1	NUP214	166	1	NM_005085	exon13	c.A1884G	p.T628T	CCCCACACCTCTC	.	PASS	Atlas-SNP
MS4A5	64232	hgsc.bcm.edu	37	11	60198328	60198328	+	Silent	SNP	C	C	T	rs708229	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	81	196	0	0.55102	0	C|0.656;T|0.344	0.344	strong	.	MS4A5	35	.	NM_023945	exon2	c.C213T	p.T71T	TTTCACCTTGTTA	.	PASS	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	37	3	184910133	184910133	+	Missense_Mutation	SNP	G	G	T	rs11919970	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	63	126	0	0.473684	0	G|0.822;T|0.178	0.178	strong	.	EHHADH	73	.	NM_001966	exon7	c.C2053A	p.Q685K	GGTTCTGCCTGTA	.	PASS	Atlas-SNP
NEK1	4750	hgsc.bcm.edu	37	4	170428901	170428901	+	Missense_Mutation	SNP	C	C	T	rs33933790	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	70	116	0	0.510949	0	C|0.961;T|0.039	0.039	strong	.	NEK1	203	.	NM_001199397	exon22	c.G1876A	p.A626T	TGTCAGCCTCTTC	.	PASS	Atlas-SNP
TIMM23	100287932	hgsc.bcm.edu	37	10	51620361	51620361	+	Missense_Mutation	SNP	G	G	C	rs148307270	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	936	490	1077	1	0.523504	0.000928505	G|0.984;C|0.016	0.016	strong	TIMM23,NS,other,0,1	TIMM23	4	1	NM_006327	exon2	c.C128G	p.S43C	TAAGGAGACAGAG	.	scavenged	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139272502	139272502	+	Silent	SNP	T	T	C	rs3812565	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	13	49	1	0.276596	0.0204082	T|0.670;C|0.330	0.330	strong	SNAPC4,caecum,carcinoma,0,1	SNAPC4	82	1	NM_003086	exon21	c.A3777G	p.L1259L	CTGGGGTAGGGGC	.	scavenged	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	37	18	2763697	2763697	+	Silent	SNP	C	C	T	rs483547	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	55	103	0	0.52381	0	C|0.685;T|0.315	0.315	strong	SMCHD1,colon,carcinoma,0,3	SMCHD1	88	3	NM_015295	exon37	c.C4629T	p.G1543G	TAAAGGCTCTAAT	.	PASS	Atlas-SNP
GPR45	11250	hgsc.bcm.edu	37	2	105859249	105859249	+	Missense_Mutation	SNP	C	C	T	rs35946826	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	65	153	0	0.471014	0	C|0.891;T|0.109	0.109	strong	GPR45,colon,carcinoma,0,1	GPR45	73	1	NM_007227	exon1	c.C934T	p.L312F	CTGTGGCTCAGTT	.	PASS	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	37	4	144442735	144442735	+	Silent	SNP	C	C	T	rs11541117	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	80	170	0	0.615385	0	C|0.512;T|0.488	0.488	strong	.	SMARCA5	73	.	NM_003601	exon3	c.C406T	p.L136L	AACTTACTATCCG	.	PASS	Atlas-SNP
TEKT4	150483	hgsc.bcm.edu	37	2	95537501	95537501	+	Silent	SNP	C	C	T	rs11889464	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	35	50	0	0.614035	0	C|0.897;T|0.103	0.103	strong	.	TEKT4	72	.	NM_144705	exon1	c.C177T	p.R59R	CGACCGCGACCAG	.	PASS	Atlas-SNP
RHO	6010	hgsc.bcm.edu	37	3	129251142	129251142	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	2	184	0	0.0108108	0	.	.	none	RHO,caecum,carcinoma,0,2	RHO	57	2	NM_000539	exon3	c.G579A	p.T193T	CTACACGCTCAAG	.	scavenged	Atlas-SNP
ZNF92	168374	hgsc.bcm.edu	37	7	64864607	64864607	+	Missense_Mutation	SNP	G	G	A	rs10239197	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	38	57	0	0.520548	0	G|0.717;A|0.283	0.283	strong	.	ZNF92	68	.	NM_152626	exon4	c.G1580A	p.R527H	CTGCACGTAAGAT	.	PASS	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	37	20	61945439	61945439	+	Missense_Mutation	SNP	G	G	C	rs147670144	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	58	139	0	0.33526	0	G|0.946;C|0.054	0.054	strong	.	COL20A1	137	.	NM_020882	exon19	c.G2374C	p.A792P	CCAGGAGCCAGGA	.	PASS	Atlas-SNP
RAB6C	84084	hgsc.bcm.edu	37	2	130738163	130738163	+	Missense_Mutation	SNP	G	G	A	rs4662674	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	460	318	511	0	0.691304	0	G|0.417;A|0.583	0.583	strong	RAB6C,NS,carcinoma,-1,1	RAB6C	28	1	NM_032144	exon1	c.G475A	p.A159T	GCAAAAGCTGGAT	.	PASS	Atlas-SNP
RASEF	158158	hgsc.bcm.edu	37	9	85613354	85613354	+	Silent	SNP	A	A	G	rs34303676	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	32	74	0	0.484848	0	A|0.966;G|0.034	0.034	strong	.	RASEF	69	.	NM_152573	exon13	c.T1731C	p.D577D	TTGGAAATCAACT	.	PASS	Atlas-SNP
TRIM15	89870	hgsc.bcm.edu	37	6	30131515	30131515	+	Silent	SNP	C	C	A	rs2523733	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	44	110	0	0.411215	0	C|0.820;A|0.180	0.180	strong	.	TRIM15	34	.	NM_033229	exon1	c.C54A	p.L18L	TACCCTCTGTGCG	.	PASS	Atlas-SNP
DAP3	7818	hgsc.bcm.edu	37	1	155699118	155699118	+	Silent	SNP	T	T	C	rs4933	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	91	203	0	0.548193	0	A|0.000;C|0.066;G|0.000;T|0.934	0.066	strong	.	DAP3	46	.	NM_033657	exon9	c.T804C	p.L268L	TGCTCTTTGGGGA	.	PASS	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	37	3	49836707	49836707	+	Silent	SNP	G	G	A	rs7629936	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	220	212	0	1	0	G|0.775;A|0.225	0.225	strong	CDHR4,caecum,carcinoma,0,1	CDHR4	37	1	NM_001007540	exon2	c.C213T	p.A71A	CCACCTGGCCAAG	.	PASS	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	37	3	10302172	10302172	+	Missense_Mutation	SNP	G	G	A	rs394558	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	58	119	0	0.513274	0	G|0.518;A|0.482	0.482	strong	.	TATDN2	59	.	NM_014760	exon3	c.G766A	p.V256I	CCAGAGGTCAGCA	.	PASS	Atlas-SNP
MPP1	4354	hgsc.bcm.edu	37	X	154020114	154020114	+	Silent	SNP	C	C	A	rs1126762	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	69	63	0	1	0	C|0.440;0|0.014	.	strong	.	MPP1	52	.	NM_001166461	exon3	c.G255T	p.T85T	CTTCAGCGTGATT	.	PASS	Atlas-SNP
ZNF492	57615	hgsc.bcm.edu	37	19	22846623	22846623	+	Missense_Mutation	SNP	G	G	A	rs71355986	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	20	73	0	0.344828	0	G|0.827;A|0.173	0.173	strong	ZNF492_ENST00000456783,NS,carcinoma,0,1	ZNF492	129	1	NM_020855	exon4	c.G152A	p.R51Q	TTGCCCGAGACCT	.	PASS	Atlas-SNP
FAM129C	199786	hgsc.bcm.edu	37	19	17660300	17660300	+	Missense_Mutation	SNP	G	G	A	rs11666267	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	27	52	0	0.350649	0	G|0.543;A|0.456	0.456	strong	FAM129C,NS,carcinoma,0,1	FAM129C	110	1	NM_001098524	exon15	c.G1807A	p.G603S	CTGGACGGCTGCT	.	PASS	Atlas-SNP
MRGPRF	116535	hgsc.bcm.edu	37	11	68777323	68777323	+	Missense_Mutation	SNP	T	T	C	rs11544721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	18	47	0	0.418605	0	T|0.700;C|0.300	0.300	strong	.	MRGPRF	22	.	NM_001098515	exon2	c.A47G	p.K16R	CTTACCTTGTTCC	.	PASS	Atlas-SNP
STK17A	9263	hgsc.bcm.edu	37	7	43647879	43647879	+	Silent	SNP	C	C	T	rs11555026	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	51	76	0	0.495146	0	C|0.858;T|0.142	0.142	strong	.	STK17A	31	.	NM_004760	exon3	c.C444T	p.D148D	CTTTGACCAGTGT	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371484	240371484	+	Silent	SNP	A	A	T	rs202006855	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	12	85	1	0.136364	0.0117647	A|0.975;T|0.026	0.026	strong	FMN2,rectum,carcinoma,0,3	FMN2	451	3	NM_020066	exon5	c.A3372T	p.L1124L	CCCTCTACCCGGA	.	scavenged	Atlas-SNP
FAM217A	222826	hgsc.bcm.edu	37	6	4069685	4069685	+	Missense_Mutation	SNP	C	C	T	rs639905	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	71	169	0	0.470199	0	C|0.732;T|0.268	0.268	strong	.	.	.	.	NM_173563	exon7	c.G772A	p.A258T	CTAGAGCACTGAA	.	PASS	Atlas-SNP
PIP5K1C	23396	hgsc.bcm.edu	37	19	3653525	3653525	+	Silent	SNP	C	C	T	rs2074957	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	65	118	0	0.515873	0	C|0.455;T|0.545	0.545	strong	PIP5K1C_ENST00000335312,NS,carcinoma,-1,1	PIP5K1C	63	1	NM_001195733	exon7	c.G684A	p.S228S	GCCCCCCGACTGC	.	PASS	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	37	6	39855288	39855288	+	Silent	SNP	C	C	A	rs35383047	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	31	69	0	0.418919	0	C|0.882;A|0.118	0.118	strong	.	DAAM2	101	.	NM_015345	exon16	c.C1980A	p.I660I	AGACATCTACCTG	.	PASS	Atlas-SNP
UEVLD	55293	hgsc.bcm.edu	37	11	18600283	18600283	+	Missense_Mutation	SNP	T	T	C	rs61752314	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	22	72	0	0.372881	0	T|0.959;C|0.041	0.041	strong	.	UEVLD	58	.	NM_001040697	exon2	c.A115G	p.M39V	TGTCCATGGAATA	.	PASS	Atlas-SNP
EDDM3A	10876	hgsc.bcm.edu	37	14	21215923	21215923	+	Missense_Mutation	SNP	G	G	T	rs34552133	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	74	143	0	0.521127	0	T|0.100;G|0.900;A|0.000	0.100	strong	.	EDDM3A	15	.	NM_006683	exon2	c.G184T	p.G62C	CTGAAAGGCAAGA	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39464779	39464779	+	Missense_Mutation	SNP	T	T	C	rs72828119	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	52	115	0	0.490566	0	T|0.917;C|0.083	0.083	strong	.	KRTAP16-1	12	.	NM_001146182	exon1	c.A727G	p.S243G	GGCAGCTACTGGT	.	PASS	Atlas-SNP
HOMER3	9454	hgsc.bcm.edu	37	19	19049194	19049194	+	Silent	SNP	G	G	A	rs11540741	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	77	176	1	0.592308	0.00568182	G|0.895;A|0.105	0.105	strong	.	HOMER3	19	.	NM_001145722	exon4	c.C271T	p.L91L	AGCCCAGGCCGTA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152279019	152279019	+	Silent	SNP	G	G	A	rs57670307	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1064	203	663	1	0.190789	0.0015083	G|0.939;A|0.061	0.061	strong	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.C8343T	p.D2781D	CTGACCGTCTTGG	.	PASS	Atlas-SNP
KRTAP29-1	100533177	hgsc.bcm.edu	37	17	39458476	39458476	+	Missense_Mutation	SNP	A	A	T	rs1001191	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	49	101	0	0.466667	0	A|0.766;T|0.234	0.234	strong	.	KRTAP29-1	2	.	NM_001257309	exon1	c.T628A	p.C210S	TATAGCAGATGGG	.	PASS	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	37	5	32091076	32091076	+	Missense_Mutation	SNP	G	G	A	rs377748174		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	3	159	1	0.0153061	0.00628931	.	.	weak	PDZD2,NS,carcinoma,0,1	PDZD2	306	1	NM_178140	exon19	c.G7522A	p.V2508M	AGCGCCGTGCTCT	.	scavenged	Atlas-SNP
METTL21C	196541	hgsc.bcm.edu	37	13	103339365	103339365	+	Silent	SNP	A	A	G	rs660207	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	29	66	0	0.42029	0	A|0.483;G|0.517	0.517	strong	METTL21C,NS,carcinoma,+2,1	METTL21C	23	1	NM_001010977	exon3	c.T325C	p.L109L	AATTCAATTCCTC	.	PASS	Atlas-SNP
TTF2	8458	hgsc.bcm.edu	37	1	117635413	117635413	+	Missense_Mutation	SNP	A	A	G	rs80076283	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	75	136	0	0.483871	0	A|0.987;G|0.013	0.013	strong	.	TTF2	92	.	NM_003594	exon18	c.A2866G	p.S956G	CAGCTCAGTGCTT	.	PASS	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	37	7	45009723	45009723	+	Silent	SNP	G	G	A	rs11555636	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	101	84	0	1	0	G|0.439;A|0.561	0.561	strong	.	MYO1G	86	.	NM_033054	exon10	c.C1248T	p.N416N	CTTCTCGTTGCAG	.	PASS	Atlas-SNP
NOP56	10528	hgsc.bcm.edu	37	20	2637071	2637071	+	Silent	SNP	T	T	C	rs8958	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	114	157	0	0.982759	0	T|0.349;C|0.651	0.651	strong	.	NOP56	73	.	NM_006392	exon9	c.T1035C	p.T345T	TAACACTCCAAAA	.	PASS	Atlas-SNP
UBC	7316	hgsc.bcm.edu	37	12	125397244	125397244	+	Silent	SNP	A	A	G	rs71458876	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	317	168	371	1	0.529968	0.00269542	A|0.985;G|0.015	0.015	strong	.	UBC	79	.	NM_021009	exon2	c.T1074C	p.R358R	CAGGGTACGACCA	.	PASS	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	37	1	53716416	53716416	+	Silent	SNP	G	G	A	rs3737983	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	90	146	0	0.502793	0	G|0.603;A|0.397	0.397	strong	LRP8,NS,carcinoma,-2,1	LRP8	58	1	NM_004631	exon17	c.C2622T	p.D874D	ATCTTCGTCTTCT	.	PASS	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	37	12	122248047	122248047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	5	121	0	0.0442478	0	.	.	none	.	SETD1B	105	.	NM_015048	exon5	c.C1196T	p.P399L	TCTCTCCGTATCA	.	PASS	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151673074	151673074	+	Missense_Mutation	SNP	C	C	G	rs41289375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	37	57	0	0.5	0	C|0.968;G|0.032	0.032	strong	.	AKAP12	170	.	NM_005100	exon4	c.C3548G	p.P1183R	ACGCACCAGGCAC	.	PASS	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	37	1	94544234	94544234	+	Missense_Mutation	SNP	T	T	C	rs3112831	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	177	183	0	0.988827	0	T|0.748;C|0.251;N|0.001	0.251	strong	ABCA4,NS,carcinoma,-1,2	ABCA4	275	2	NM_000350	exon10	c.A1268G	p.H423R	CTAACGTGTTCCA	.	PASS	Atlas-SNP
LIG4	3981	hgsc.bcm.edu	37	13	108863609	108863609	+	Missense_Mutation	SNP	G	G	A	rs1805389	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	47	48	0	0.552941	0	G|0.955;A|0.045	0.045	strong	.	LIG4	91	.	NM_206937	exon3	c.C8T	p.A3V	TGTGAGGCAGCCA	.	PASS	Atlas-SNP
MDH2	4191	hgsc.bcm.edu	37	7	75677504	75677504	+	Missense_Mutation	SNP	C	C	T	rs6720	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	7	8	0	0.7	0	C|0.494;T|0.506	0.506	strong	MDH2,NS,carcinoma,0,1	MDH2	35	1	NM_005918	exon1	c.C26T	p.A9V	GGCCTGCCAGCGC	.	PASS	Atlas-SNP
LOR	4014	hgsc.bcm.edu	37	1	153234295	153234295	+	Silent	SNP	G	G	A	rs12043009	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	65	59	0	0.942029	0	G|0.777;A|0.223	0.223	strong	.	LOR	19	.	NM_000427	exon2	c.G870A	p.G290G	CTCCGGGAGTGGC	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274206	39274206	+	Missense_Mutation	SNP	C	C	T	rs79388709	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	10	68	0	0.104167	0	T|1.000;|0.000	1.000	weak	KRTAP4-11,NS,carcinoma,0,9	KRTAP4-11	94	9	NM_033059	exon1	c.G362A	p.R121K	TGGGGTCTGCAGC	.	PASS	Atlas-SNP
CATSPER4	378807	hgsc.bcm.edu	37	1	26517267	26517267	+	Missense_Mutation	SNP	A	A	G	rs41284333	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	47	53	0	0.566265	0	A|0.826;G|0.174	0.174	strong	CATSPER4,NS,carcinoma,0,1	CATSPER4	59	1	NM_198137	exon1	c.A149G	p.H50R	CCATTCACGAGTC	.	PASS	Atlas-SNP
ZNF792	126375	hgsc.bcm.edu	37	19	35449760	35449760	+	Silent	SNP	G	G	C	rs2651080	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	40	81	0	0.470588	0	G|0.671;C|0.329	0.329	strong	ZNF792,NS,carcinoma,-1,2	ZNF792	46	2	NM_175872	exon4	c.C999G	p.T333T	TTCACCGGTGTGA	.	PASS	Atlas-SNP
CAMTA2	23125	hgsc.bcm.edu	37	17	4883045	4883045	+	Silent	SNP	C	C	T	rs79255821	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	40	80	0	0.408163	0	C|0.957;T|0.043	0.043	strong	.	CAMTA2	93	.	NM_001171167	exon9	c.G1641A	p.P547P	GGGGGTCGGAGCA	.	PASS	Atlas-SNP
TFB1M	51106	hgsc.bcm.edu	37	6	155606325	155606325	+	Silent	SNP	C	C	T	rs324356	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	99	107	0	1	0	C|0.338;T|0.662	0.662	strong	.	TFB1M	30	.	NM_016020	exon5	c.G633A	p.T211T	TGGAATCGTAAAG	.	PASS	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	37	2	182395345	182395345	+	Missense_Mutation	SNP	G	G	A	rs1143676	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	181	208	0	1	0	G|0.258;A|0.742	0.742	strong	.	ITGA4	142	.	NM_000885	exon24	c.G2633A	p.R878Q	TAGTCCGGTTCTT	.	PASS	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	37	5	96127833	96127833	+	Silent	SNP	G	G	A	rs3213809	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	59	101	0	0.479675	0	G|0.905;A|0.095	0.095	strong	.	ERAP1	59	.	NM_001198541	exon8	c.C1251T	p.H417H	CACAGGGTGTGAG	.	PASS	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39595539	39595539	+	Silent	SNP	A	A	G	rs117668654		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	7	87	0	0.0777778	0	A|0.999;G|0.001	0.001	weak	KRT38,rectum,carcinoma,0,1	KRT38	63	1	NM_006771	exon3	c.T648C	p.D216D	GGTCGCATCATCC	.	scavenged	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73090261	73090261	+	Silent	SNP	T	T	C	rs7716253	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	112	117	0	0.99115	0	T|0.404;C|0.596	0.596	strong	.	.	.	.	NM_001080479	exon8	c.T945C	p.A315A	AGCAGCTGAAAAG	.	PASS	Atlas-SNP
FAM222B	55731	hgsc.bcm.edu	37	17	27085564	27085564	+	Silent	SNP	A	A	G	rs2043031	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	18	41	0	0.5	0	A|0.808;G|0.192	0.192	strong	.	.	.	.	NM_018182	exon4	c.T1413C	p.L471L	CATGGCAAGGTCC	.	PASS	Atlas-SNP
NEUROG1	4762	hgsc.bcm.edu	37	5	134870913	134870913	+	Silent	SNP	G	G	A	rs8192559	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	50	100	0	0.588235	0	G|0.941;A|0.059	0.059	strong	.	NEUROG1	18	.	NM_006161	exon1	c.C468T	p.P156P	GCCTCCGGGCAGC	.	PASS	Atlas-SNP
ELMOD2	255520	hgsc.bcm.edu	37	4	141464666	141464666	+	Missense_Mutation	SNP	G	G	A	rs148286208	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	36	81	0	0.382979	0	A|0.001;G|0.999	0.001	strong	.	ELMOD2	16	.	NM_153702	exon8	c.G662A	p.S221N	TGAAGAGTGAAGC	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12376811	12376811	+	Missense_Mutation	SNP	A	A	C	rs2192828	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	71	166	0	0.489655	0	A|0.306;C|0.694	0.694	strong	.	VWDE	123	.	NM_001135924	exon25	c.T4454G	p.F1485C	TTTTGGAATCTCC	.	PASS	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	37	20	47626847	47626847	+	Silent	SNP	T	T	C	rs2295580	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	100	0	0.473118	0	A|0.003;C|0.372;G|0.003;T|0.622	0.372	strong	ARFGEF2,colon,carcinoma,0,1	ARFGEF2	160	1	NM_006420	exon27	c.T3663C	p.G1221G	CTCAGGTTGGAAG	.	PASS	Atlas-SNP
PPAT	5471	hgsc.bcm.edu	37	4	57268328	57268328	+	Silent	SNP	T	T	C	rs2271924	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	44	82	0	0.517647	0	T|0.907;C|0.093	0.093	strong	.	PPAT	41	.	NM_002703	exon6	c.A681G	p.T227T	TCCTTCTGTTTCT	.	PASS	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	37	20	6093177	6093177	+	Missense_Mutation	SNP	A	A	G	rs16991866	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	41	71	0	0.554054	0	A|0.898;G|0.102	0.102	strong	.	FERMT1	106	.	NM_017671	exon4	c.T479C	p.I160T	TCAATTATGGGTT	.	PASS	Atlas-SNP
CDC25B	994	hgsc.bcm.edu	37	20	3784110	3784110	+	Silent	SNP	C	C	T	rs1056720	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	75	139	0	0.465839	0	C|0.781;T|0.219	0.219	strong	.	CDC25B	76	.	NM_021873	exon14	c.C1416T	p.I472I	CCCCATCGCGCCC	.	PASS	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	37	1	160121899	160121899	+	Silent	SNP	A	A	G	rs77332724	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	22	32	0	0.6875	0	A|0.910;G|0.090	0.090	strong	.	ATP1A4	167	.	NM_144699	exon1	c.A69G	p.K23K	TAAAAAAGGGCTT	.	PASS	Atlas-SNP
KLK7	5650	hgsc.bcm.edu	37	19	51483620	51483620	+	Silent	SNP	G	G	C	rs35354640	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	85	233	0	0.425	0	G|0.986;C|0.014	0.014	strong	.	KLK7	40	.	NM_139277	exon4	c.C345G	p.L115L	CTTCACGAGCATG	.	PASS	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	37	3	174814738	174814738	+	Missense_Mutation	SNP	G	G	A	rs9823911	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	79	195	0	0.438889	0	G|0.642;A|0.358	0.358	strong	.	NAALADL2	86	.	NM_207015	exon2	c.G202A	p.G68S	CTAGACGGTGCTG	.	PASS	Atlas-SNP
PFN4	375189	hgsc.bcm.edu	37	2	24344060	24344060	+	Silent	SNP	T	T	G	rs33913065	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	121	115	0	1	0	T|0.834;G|0.166	0.166	strong	.	PFN4	16	.	NM_199346	exon3	c.A228C	p.A76A	TTCATCTGCCCGG	.	PASS	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	37	17	62036738	62036738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	69	151	0	0.489362	0	.	.	none	.	SCN4A	205	.	NM_000334	exon12	c.G1906A	p.E636K	AATACTCGTAGGG	.	PASS	Atlas-SNP
HLA-DQB2	3120	hgsc.bcm.edu	37	6	32726788	32726788	+	Missense_Mutation	SNP	T	T	C	rs56536369	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	47	193	2	0.22381	0.0103627	T|0.992;C|0.008	0.008	strong	HLA-DQB2,NS,carcinoma,-1,1	HLA-DQB2	22	1	NM_001198858	exon3	c.A485G	p.D162G	TCCTGGTCATTCC	.	scavenged	Atlas-SNP
TRAPPC11	60684	hgsc.bcm.edu	37	4	184612553	184612553	+	Missense_Mutation	SNP	G	G	C	rs67383011	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	50	124	0	0.45045	0	G|0.916;C|0.084	0.084	strong	.	.	.	.	NM_021942	exon19	c.G1978C	p.V660L	TGCCTAGTTCCTG	.	PASS	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	37	19	56369914	56369914	+	Silent	SNP	C	C	T	rs113444208	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	33	53	0	0.452055	0	C|0.996;T|0.004	0.004	strong	.	NLRP4	331	.	NM_134444	exon3	c.C1155T	p.A385A	GGGTGCCGAGGGC	.	PASS	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	37	8	132052342	132052342	+	Missense_Mutation	SNP	C	C	T	rs2228949	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	6	5	1	0	0.833333	0	C|0.979;T|0.021	0.021	strong	.	ADCY8	291	.	NM_001115	exon1	c.G238A	p.A80T	GCGGCGCGTGGTG	.	PASS	Atlas-SNP
HMOX2	3163	hgsc.bcm.edu	37	16	4556911	4556911	+	Silent	SNP	G	G	A	rs25685	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	53	103	0	0.546392	0	G|0.921;A|0.079	0.079	strong	.	HMOX2	22	.	NM_001127205	exon3	c.G102A	p.S34S	CCTCTCGGAGCTC	.	PASS	Atlas-SNP
HERPUD2	64224	hgsc.bcm.edu	37	7	35709842	35709842	+	Missense_Mutation	SNP	C	C	T	rs3779234	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	54	86	0	0.534653	0	C|0.703;T|0.297	0.297	strong	.	HERPUD2	47	.	NM_022373	exon4	c.G322A	p.A108T	TGGATGCCAATGC	.	PASS	Atlas-SNP
FCRLB	127943	hgsc.bcm.edu	37	1	161697072	161697072	+	Missense_Mutation	SNP	G	G	C	rs72704099	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	33	72	0	0.434211	0	G|0.770;C|0.230	0.230	strong	FCRLB,NS,carcinoma,0,1	FCRLB	35	1	NM_001002901	exon6	c.G901C	p.A301P	GCCCCAGCTCCAT	.	PASS	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	37	7	78119109	78119109	+	Silent	SNP	C	C	T	rs3735442	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	169	184	0	0.988304	0	C|0.670;T|0.330	0.330	strong	.	MAGI2	246	.	NM_012301	exon6	c.G1014A	p.K338K	TTTAGCCTTTTTC	.	PASS	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	37	10	134973995	134973995	+	Silent	SNP	G	G	A	rs71503783	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	7	4	4	0	0.571429	0	G|0.736;A|0.264	0.264	strong	.	KNDC1	155	.	NM_152643	exon1	c.G24A	p.A8A	GGCCGCGGCGGAT	.	PASS	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	37	19	5212482	5212482	+	Silent	SNP	G	G	A	rs2230611	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	31	58	0	0.442857	0	G|0.889;A|0.111	0.111	strong	PTPRS,NS,carcinoma,0,1	PTPRS	169	1	NM_002850	exon31	c.C4635T	p.R1545R	GACCTCGCGTTTC	.	PASS	Atlas-SNP
GEN1	348654	hgsc.bcm.edu	37	2	17962450	17962450	+	Silent	SNP	A	A	G	rs300168	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	43	92	0	0.5	0	A|0.505;G|0.495	0.495	strong	.	GEN1	79	.	NM_182625	exon14	c.A1971G	p.E657E	TCCTGAAGAGCAT	.	PASS	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	37	5	140176592	140176592	+	Silent	SNP	G	G	A	rs149822412	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	75	139	0	0.465839	0	G|0.975;A|0.025	0.025	strong	.	PCDHA2	404	.	NM_031495	exon1	c.G2043A	p.R681R	GTCGCGGGCGTGG	.	PASS	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	37	18	59781800	59781800	+	Silent	SNP	A	A	G	rs13381627	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	25	56	0	0.471698	0	A|0.876;G|0.124	0.124	strong	.	PIGN	62	.	NM_176787	exon15	c.T1245C	p.D415D	CACTTCATCAAAC	.	PASS	Atlas-SNP
APOL1	8542	hgsc.bcm.edu	37	22	36661330	36661330	+	Missense_Mutation	SNP	G	G	A	rs2239785	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	61	148	0	0.417808	0	G|0.329;A|0.671	0.671	strong	.	APOL1	35	.	NM_145343	exon7	c.G496A	p.E166K	AAAAGTGAGCTTG	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982584	57982584	+	Missense_Mutation	SNP	T	T	C	rs1966835	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	323	157	352	0	0.486068	0	T|0.569;C|0.431	0.431	strong	.	OR1S1	139	.	NM_001004458	exon1	c.T368C	p.I123T	TCGTCATTGACAA	.	PASS	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	37	13	25440318	25440318	+	Missense_Mutation	SNP	G	G	A	rs9507425	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	105	250	0	0.477273	0	G|0.778;A|0.222	0.222	strong	.	RNF17	259	.	NM_031277	exon30	c.G4138A	p.E1380K	GAAGAGGAACAAT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214816142	214816142	+	Silent	SNP	T	T	G	rs3795516	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	39	84	0	0.453488	0	T|0.915;G|0.085	0.085	strong	.	CENPF	321	.	NM_016343	exon12	c.T4461G	p.L1487L	TAGTCTTAGCAGT	.	PASS	Atlas-SNP
ART1	417	hgsc.bcm.edu	37	11	3681115	3681115	+	Silent	SNP	A	A	G	rs35136756	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	38	96	0	0.457831	0	A|0.842;G|0.158	0.158	strong	.	ART1	21	.	NM_004314	exon3	c.A366G	p.T122T	CTACACAGCCAAC	.	PASS	Atlas-SNP
TMEM140	55281	hgsc.bcm.edu	37	7	134849213	134849213	+	Missense_Mutation	SNP	G	G	A	rs3800592	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	89	166	0	0.494444	0	G|0.536;A|0.464	0.464	strong	.	TMEM140	18	.	NM_018295	exon2	c.G20A	p.R7Q	GGCCTCGGTGGCG	.	PASS	Atlas-SNP
MVD	4597	hgsc.bcm.edu	37	16	88724347	88724347	+	Silent	SNP	G	G	T	rs2279258	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	21	63	0	0.355932	0	G|0.443;T|0.557	0.557	strong	.	MVD	27	.	NM_002461	exon3	c.C232A	p.R78R	GCAGCCGCGGCTG	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47925331	47925331	+	Missense_Mutation	SNP	C	C	G	rs10274334	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	99	0	1	0	C|0.438;G|0.562	0.562	strong	.	PKD1L1	328	.	NM_138295	exon18	c.G3158C	p.R1053P	TCAGAGCGGCCAG	.	PASS	Atlas-SNP
RNASE1	6035	hgsc.bcm.edu	37	14	21269811	21269811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	105	213	0	0.541237	0	.	.	none	.	RNASE1	14	.	NM_198235	exon3	c.A417T	p.E139D	GCTCCCTTCACAG	.	PASS	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	37	17	43552812	43552812	+	Silent	SNP	A	A	G	rs71227520	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	105	194	0	0.990566	0	A|0.925;G|0.075	0.075	strong	.	PLEKHM1	69	.	NM_014798	exon4	c.T577C	p.L193L	GGGCCAATGGGGT	.	PASS	Atlas-SNP
MTAP	4507	hgsc.bcm.edu	37	9	21816758	21816758	+	Missense_Mutation	SNP	G	G	A	rs7023954	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	39	96	0	0.423913	0	G|0.589;A|0.411	0.411	strong	.	MTAP	23	.	NM_002451	exon3	c.G166A	p.V56I	GATTGCGTCCTCC	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7817959	7817959	+	Silent	SNP	G	G	A	rs73406603	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	61	57	0	1	0	G|0.739;A|0.261	0.261	strong	OR5P2,brain,glioma,0,1	OR5P2	68	1	NM_153444	exon1	c.C531T	p.F177F	GGGAGCGAAATCA	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62259637	62259637	+	Missense_Mutation	SNP	C	C	T	rs3784634	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	103	124	0	1	0	C|0.293;T|0.707	0.707	strong	.	VPS13C	506	.	NM_020821	exon29	c.G2921A	p.R974K	GGCTTCCTTTTGG	.	PASS	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	37	7	72891754	72891754	+	Silent	SNP	C	C	T	rs2074754	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	71	151	0	0.44375	0	T|0.350;C|0.650	0.350	strong	.	BAZ1B	147	.	NM_032408	exon7	c.G2037A	p.S679S	GATTTCCGACAGC	.	PASS	Atlas-SNP
METTL2B	55798	hgsc.bcm.edu	37	7	128119514	128119514	+	Missense_Mutation	SNP	G	G	A	rs1065267	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	405	124	394	0	0.306173	0	G|0.906;A|0.094	0.094	strong	.	METTL2B	34	.	NM_018396	exon3	c.G505A	p.E169K	GACCTGGAAATTT	.	PASS	Atlas-SNP
SLC45A3	85414	hgsc.bcm.edu	37	1	205628425	205628425	+	Silent	SNP	G	G	A	rs143282781	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	98	202	0	0.5	0	G|0.998;A|0.002	0.002	strong	.	SLC45A3	54	.	NM_033102	exon5	c.C1599T	p.V533V	AATGGCGACCAGA	.	PASS	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	37	9	137707834	137707834	+	Silent	SNP	G	G	A	rs3827848	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	223	228	0	1	0	G|0.865;A|0.135	0.135	strong	COL5A1,NS,carcinoma,0,2	COL5A1	323	2	NM_000093	exon52	c.G4122A	p.T1374T	GCAGACGGTGAGT	.	PASS	Atlas-SNP
C8A	731	hgsc.bcm.edu	37	1	57333312	57333312	+	Silent	SNP	A	A	G	rs34047108	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	67	140	0	0.492647	0	A|0.987;G|0.013	0.013	strong	.	C8A	103	.	NM_000562	exon2	c.A108G	p.A36A	CGCAGCAGTTACC	.	PASS	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888050	52888050	+	Missense_Mutation	SNP	A	A	G	rs76053634	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	9	21	4	0.236842	0.190476	A|0.867;G|0.133	0.133	strong	ZNF880,colon,carcinoma,0,2	ZNF880	45	2	NM_001145434	exon4	c.A1217G	p.Q406R	GAGAGCAACCTTA	.	scavenged	Atlas-SNP
JPH2	57158	hgsc.bcm.edu	37	20	42747247	42747247	+	Missense_Mutation	SNP	C	C	T	rs3810510	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	23	31	0	0.638889	0	C|0.772;T|0.228	0.228	strong	JPH2,caecum,carcinoma,0,1	JPH2	86	1	NM_020433	exon3	c.G1186A	p.A396T	CTTTGGCCTTGGC	.	PASS	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	37	17	2606715	2606715	+	Silent	SNP	G	G	A	rs1065479	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	61	114	0	0.491935	0	G|0.481;A|0.519	0.519	strong	.	.	.	.	NM_015229	exon3	c.C258T	p.R86R	GCAGGTGCGGTGA	.	PASS	Atlas-SNP
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32549362	32549362	+	Silent	SNP	G	G	A	rs3200488	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	29	180	0	0.187097	0	G|0.410;A|0.590	0.590	strong	HLA-DRB1,NS,carcinoma,0,1	HLA-DRB1	41	1	NM_002124	exon3	c.C624T	p.S208S	TGTCACGCTTGGG	.	scavenged	Atlas-SNP
SEMA4D	10507	hgsc.bcm.edu	37	9	91978783	91978783	+	Silent	SNP	G	G	A	rs45515192	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	33	68	0	0.52381	0	G|0.883;A|0.117	0.117	strong	.	SEMA4D	81	.	NM_001142287	exon19	c.C1965T	p.P655P	GCCATCGGGCAGT	.	PASS	Atlas-SNP
DDI2	84301	hgsc.bcm.edu	37	1	15959977	15959977	+	Silent	SNP	C	C	T	rs3795763	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	40	111	0	0.454545	0	C|0.707;T|0.293	0.293	strong	.	DDI2	38	.	NM_032341	exon4	c.C549T	p.A183A	CCGAGCCCGGAGA	.	PASS	Atlas-SNP
DNM2	1785	hgsc.bcm.edu	37	19	10939792	10939792	+	Silent	SNP	T	T	C	rs2229920	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	55	123	0	0.348101	0	T|0.682;C|0.318	0.318	strong	.	DNM2	175	.	NM_001005361	exon19	c.T2139C	p.A713A	GTCGGCTGACCAG	.	PASS	Atlas-SNP
DDX59	83479	hgsc.bcm.edu	37	1	200635617	200635617	+	Silent	SNP	G	G	A	rs78479136	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	106	165	0	0.519608	0	G|0.942;A|0.058	0.058	strong	.	DDX59	117	.	NM_001031725	exon2	c.C252T	p.S84S	AGGATGGCTGTCC	.	PASS	Atlas-SNP
ARHGAP15	55843	hgsc.bcm.edu	37	2	144194565	144194565	+	Silent	SNP	C	C	T	rs17230746	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	102	202	0	0.449339	0	C|0.853;T|0.147	0.147	strong	.	ARHGAP15	99	.	NM_018460	exon8	c.C657T	p.Y219Y	TCACTACGACAGT	.	PASS	Atlas-SNP
DCLK3	85443	hgsc.bcm.edu	37	3	36779992	36779992	+	Silent	SNP	G	G	A	rs55888784	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	58	113	0	0.54717	0	G|0.982;A|0.018	0.018	strong	DCLK3,NS,carcinoma,-2,1	DCLK3	95	1	NM_033403	exon2	c.C159T	p.R53R	CCCACAGCGGTGG	.	PASS	Atlas-SNP
LPL	4023	hgsc.bcm.edu	37	8	19809435	19809435	+	Silent	SNP	G	G	A	rs1121923	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	40	127	0	0.430108	0	G|0.937;A|0.063	0.063	strong	.	LPL	78	.	NM_000237	exon3	c.G405A	p.V135V	GGATGTGGCCCGG	.	PASS	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	41008780	41008780	+	Missense_Mutation	SNP	A	A	G	rs2271704	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	197	201	0	1	0	A|0.219;G|0.781	0.781	strong	.	.	.	.	NM_173489	exon33	c.T3536C	p.L1179P	CAAGTGAGCATCT	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139165273	139165273	+	Missense_Mutation	SNP	G	G	A	rs13280444	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	107	197	0	0.560209	0	G|0.670;A|0.330	0.330	strong	.	FAM135B	423	.	NM_015912	exon13	c.C1445T	p.P482L	TCACCTGGCTCTG	.	PASS	Atlas-SNP
PXK	54899	hgsc.bcm.edu	37	3	58376938	58376938	+	Silent	SNP	G	G	A	rs55962533	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	36	65	0	0.529412	0	G|0.991;A|0.009	0.009	strong	.	PXK	89	.	NM_017771	exon6	c.G531A	p.V177V	GCTAGTGTTAAGC	.	PASS	Atlas-SNP
SH3BP2	6452	hgsc.bcm.edu	37	4	2822467	2822467	+	Silent	SNP	G	G	T	rs231402	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	47	100	0	0.431193	0	G|0.647;T|0.353	0.353	strong	.	SH3BP2	43	.	NM_001145856	exon2	c.G294T	p.L98L	CCAGCTGCAGCTG	.	PASS	Atlas-SNP
RUNDC3A	10900	hgsc.bcm.edu	37	17	42392622	42392622	+	Silent	SNP	T	T	C	rs708386	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	62	58	0	1	0	T|0.367;C|0.633	0.633	strong	.	RUNDC3A	30	.	NM_001144825	exon7	c.T729C	p.D243D	CACCGATGAGGAC	.	PASS	Atlas-SNP
CALCR	799	hgsc.bcm.edu	37	7	93116299	93116299	+	Missense_Mutation	SNP	A	A	G	rs2301680	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	21	62	0	0.375	0	A|0.450;G|0.550	0.550	strong	CALCR_ENST00000359558,NS,malignant_melanoma,+1,3	CALCR	200	3	NM_001164737	exon4	c.T49C	p.S17P	TTTTTGATTTTTG	.	PASS	Atlas-SNP
ZKSCAN7	55888	hgsc.bcm.edu	37	3	44611896	44611896	+	Missense_Mutation	SNP	A	A	G	rs9835485	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	35	48	1	0.714286	0.0208333	A|0.700;G|0.300	0.300	strong	ZNF167,colon,carcinoma,0,1	.	.	1	NM_018651	exon6	c.A1294G	p.T432A	CTCAGAACCCACA	.	scavenged	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152500449	152500449	+	Missense_Mutation	SNP	C	C	G	rs13013209	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	357	355	341	0	0.994398	0	C|0.678;G|0.322	0.322	strong	.	NEB	1697	.	NM_004543	exon57	c.G7839C	p.K2613N	GCACTTCTTGGCC	.	PASS	Atlas-SNP
DMP1	1758	hgsc.bcm.edu	37	4	88584160	88584160	+	Silent	SNP	G	G	A	rs2615497	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	68	111	0	0.596491	0	G|0.715;A|0.285	0.285	strong	DMP1,caecum,carcinoma,0,1	DMP1	72	1	NM_004407	exon6	c.G1230A	p.E410E	CAGTGAGAGCCTC	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	37	14	102901023	102901023	+	Silent	SNP	G	G	A	rs45605932	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	34	72	0	0.435897	0	G|0.880;A|0.120	0.120	strong	.	TECPR2	114	.	NM_001172631	exon9	c.G1869A	p.G623G	TCCTGGGGCGCAT	.	PASS	Atlas-SNP
TPP2	7174	hgsc.bcm.edu	37	13	103275386	103275386	+	Silent	SNP	T	T	C	rs2230854	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	40	86	0	0.506329	0	A|0.097;C|0.415	0.415	strong	.	TPP2	124	.	NM_003291	exon6	c.T780C	p.S260S	GACCAGTGGAGGT	.	PASS	Atlas-SNP
THEMIS2	9473	hgsc.bcm.edu	37	1	28209305	28209305	+	Silent	SNP	A	A	G	rs3766398	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	70	163	0	0.460526	0	A|0.498;G|0.502	0.502	strong	.	.	.	.	NM_001105556	exon4	c.A1470G	p.L490L	GAGCCTAGACTCT	.	PASS	Atlas-SNP
UEVLD	55293	hgsc.bcm.edu	37	11	18568542	18568542	+	Silent	SNP	A	A	T	rs34242612	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	30	79	0	0.483871	0	A|0.941;T|0.059	0.059	strong	.	UEVLD	58	.	NM_001040697	exon8	c.T771A	p.G257G	AGAACTACCCAAA	.	PASS	Atlas-SNP
NBPF14	25832	hgsc.bcm.edu	37	1	148009437	148009437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	17	172	0	0.0648855	0	.	.	none	.	NBPF14	107	.	NM_015383	exon16	c.G1870A	p.G624S	GACAACCTGAAGG	.	PASS	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	37	15	29421054	29421054	+	Missense_Mutation	SNP	C	C	T	rs2306933	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	17	61	0	0.333333	0	C|0.877;T|0.123	0.123	strong	.	FAM189A1	20	.	NM_015307	exon8	c.G941A	p.G314D	TGCTGACCTATAC	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44248769	44248769	+	Silent	SNP	T	T	C	rs1881193	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	333	333	314	0	1	0	T|0.841;C|0.159	0.159	strong	.	.	.	.	NM_001193466	exon2	c.A741G	p.R247R	TGATAATCTACTG	.	PASS	Atlas-SNP
KANK3	256949	hgsc.bcm.edu	37	19	8389405	8389405	+	Silent	SNP	G	G	A	rs12981073	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	80	116	0	0.547945	0	G|0.840;A|0.159	0.159	strong	.	KANK3	35	.	NM_198471	exon10	c.C2310T	p.A770A	CTCCAGGGCGATG	.	PASS	Atlas-SNP
MYPOP	339344	hgsc.bcm.edu	37	19	46394322	46394322	+	Silent	SNP	G	G	A	rs114387602	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	26	53	0	0.530612	0	G|0.923;A|0.077	0.077	strong	.	MYPOP	23	.	NM_001012643	exon3	c.C759T	p.L253L	GGCCGAGAGCGTG	.	PASS	Atlas-SNP
ARSB	411	hgsc.bcm.edu	37	5	78135201	78135201	+	Silent	SNP	C	C	T	rs25413	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	66	147	0	0.434211	0	C|0.727;T|0.273	0.273	strong	ARSB,NS,carcinoma,-1,1	ARSB	47	1	NM_198709	exon7	c.G1191A	p.P397P	GAAGTTCGGGTCA	.	PASS	Atlas-SNP
TMEM86B	255043	hgsc.bcm.edu	37	19	55739689	55739689	+	Silent	SNP	G	G	A	rs10413828	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	37	61	0	0.596774	0	G|0.620;A|0.380	0.380	strong	.	TMEM86B	12	.	NM_173804	exon2	c.C168T	p.P56P	GAGGACGGGCAGG	.	PASS	Atlas-SNP
LAIR1	3903	hgsc.bcm.edu	37	19	54867572	54867572	+	Silent	SNP	C	C	T	rs7257187	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	32	83	0	0.533333	0	C|0.734;T|0.266	0.266	strong	.	LAIR1	44	.	NM_002287	exon9	c.G708A	p.T236T	GGTGTCCGTCTCT	.	PASS	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	37	14	44975147	44975147	+	Silent	SNP	A	A	G	rs11623175	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	66	102	0	0.564103	0	A|0.914;G|0.086	0.086	strong	.	FSCB	173	.	NM_032135	exon1	c.T1044C	p.A348A	AATTTCAGCCAGA	.	PASS	Atlas-SNP
IL17C	27189	hgsc.bcm.edu	37	16	88706330	88706330	+	Silent	SNP	C	C	T	rs11076688	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	17	20	0	0.607143	0	C|0.932;T|0.068	0.068	strong	.	IL17C	6	.	NM_013278	exon3	c.C444T	p.S148S	CAACTCCGTGCGG	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	37	2	238249630	238249630	+	Silent	SNP	C	C	T	rs4433949	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	109	206	0	0.469828	0	C|0.625;T|0.375	0.375	strong	.	COL6A3	608	.	NM_004369	exon38	c.G7929A	p.A2643A	CAGGTACGCTATG	.	PASS	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	37	1	19615062	19615062	+	Missense_Mutation	SNP	C	C	G	rs199504000	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	39	115	0	0.210811	0	C|0.998;G|0.002	0.002	weak	AKR7A3,NS,carcinoma,0,1	AKR7A3	30	1	NM_012067	exon1	c.G142C	p.V48L	TGTACACGAAGGC	.	PASS	Atlas-SNP
CD93	22918	hgsc.bcm.edu	37	20	23065342	23065342	+	Silent	SNP	A	A	G	rs3746732	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	113	114	0	0.991228	0	A|0.233;G|0.766	0.766	strong	CD93,NS,carcinoma,-2,1	CD93	84	1	NM_012072	exon1	c.T1488C	p.R496R	TGCAGCACGGGGC	.	PASS	Atlas-SNP
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45994488	45994488	+	Missense_Mutation	SNP	G	G	T	rs396912	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	230	117	220	0	0.508696	0	G|0.785;T|0.215	0.215	strong	KRTAP10-4,colon,carcinoma,-1,1	KRTAP10-4	44	1	NM_198687	exon1	c.G853T	p.G285C	CCTGTCGGCTCTG	.	PASS	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	37	14	75230837	75230837	+	Silent	SNP	A	A	G	rs12885527	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	65	131	0	0.451389	0	A|0.958;G|0.042	0.042	strong	.	YLPM1	298	.	NM_019589	exon1	c.A645G	p.Q215Q	CTCGCAATCCTAT	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12428803	12428803	+	Missense_Mutation	SNP	G	G	A	rs848016	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	46	84	0	0.516854	0	G|0.324;A|0.676	0.676	strong	.	VWDE	123	.	NM_001135924	exon3	c.C425T	p.S142F	TATACAGAAAAGT	.	PASS	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	37	13	32911888	32911888	+	Silent	SNP	A	A	G	rs1801406	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	37	76	0	0.493333	0	A|0.722;G|0.278	0.278	strong	.	BRCA2	812	.	NM_000059	exon11	c.A3396G	p.K1132K	TAGAAAACCAAGC	.	PASS	Atlas-SNP
CIB2	10518	hgsc.bcm.edu	37	15	78401620	78401620	+	Silent	SNP	C	C	T	rs77370542	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	58	112	0	0.53211	0	C|0.978;T|0.022	0.022	strong	CIB2,NS,carcinoma,-1,1	CIB2	24	1	NM_006383	exon4	c.G303A	p.S101S	GGGAGCCGACTCG	.	PASS	Atlas-SNP
MCC	4163	hgsc.bcm.edu	37	5	112823998	112823998	+	Silent	SNP	C	C	T	rs348943	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	37	59	0	0.521127	0	C|0.505;T|0.495	0.495	strong	.	MCC	234	.	NM_001085377	exon1	c.G114A	p.E38E	CATCCTCTCCTCC	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152084216	152084216	+	Missense_Mutation	SNP	C	C	G	rs201131683	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	20	154	0	0.114943	0	C|0.986;G|0.013	0.013	strong	TCHH,NS,lymphoid_neoplasm,0,1	TCHH	275	1	NM_007113	exon3	c.G1477C	p.E493Q	CCTCCTCCTCGAG	.	PASS	Atlas-SNP
TNC	3371	hgsc.bcm.edu	37	9	117797597	117797597	+	Silent	SNP	T	T	C	rs12347433	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	20	50	0	0.434783	0	T|0.813;C|0.187	0.187	strong	TNC,NS,carcinoma,0,1	TNC	282	1	NM_002160	exon22	c.A5673G	p.R1891R	CAAGTCTCTTGGA	.	PASS	Atlas-SNP
C4BPA	722	hgsc.bcm.edu	37	1	207304900	207304900	+	Missense_Mutation	SNP	T	T	C	rs4844573	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	41	77	0	0.460674	0	T|0.519;C|0.481	0.481	strong	.	C4BPA	70	.	NM_000715	exon8	c.T899C	p.I300T	GTTGTATTAATTT	.	PASS	Atlas-SNP
AK2	204	hgsc.bcm.edu	37	1	33478841	33478841	+	Missense_Mutation	SNP	C	C	T	rs201817938		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	54	157	0	0.367347	0	.	.	weak	.	AK2	27	.	NM_013411	exon6	c.G661A	p.A221T	TGCTTGCGAACAC	.	PASS	Atlas-SNP
AAMDC	28971	hgsc.bcm.edu	37	11	77583266	77583266	+	Missense_Mutation	SNP	G	G	A	rs2186564	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	51	133	2	0.386364	0.0150376	G|0.876;N|0.000	.	strong	C11orf67,NS,carcinoma,0,1	.	.	1	NM_024684	exon4	c.G274A	p.V92M	ATTGATGTGCGGG	.	scavenged	Atlas-SNP
CDC42EP1	11135	hgsc.bcm.edu	37	22	37962583	37962583	+	Missense_Mutation	SNP	G	G	A	rs61739954	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	59	153	0	0.437037	0	G|0.980;A|0.020	0.020	strong	CDC42EP1,colon,carcinoma,0,1	CDC42EP1	53	1	NM_152243	exon2	c.G227A	p.R76H	CCCATCGCTCACC	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291308	1291308	+	Silent	SNP	A	A	G	rs71384641		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	58	216	1	0.241667	0.00462963	G|1.000;|0.000	1.000	weak	TPSAB1,NS,carcinoma,+2,1	TPSAB1	24	1	NM_003294	exon3	c.A216G	p.A72A	GACCGCAGCGCAC	.	scavenged	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	37	4	95506827	95506827	+	Silent	SNP	G	G	A	rs11722955	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	50	119	0	0.403226	0	G|0.921;A|0.079	0.079	strong	.	PDLIM5	76	.	NM_006457	exon6	c.G822A	p.R274R	TCCAAGGACTGGA	.	PASS	Atlas-SNP
SOWAHD	347454	hgsc.bcm.edu	37	X	118893413	118893413	+	Silent	SNP	T	T	C	rs2782225	bycluster;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	41	56	0	1	0	T|0.366;C|0.634	0.634	strong	.	.	.	.	NM_001105576	exon1	c.T783C	p.S261S	CAGCAGTGGCACC	.	PASS	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	37	9	77436641	77436641	+	Silent	SNP	G	G	A	rs7018994	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	34	67	0	0.507463	0	G|0.701;A|0.299	0.299	strong	.	TRPM6	377	.	NM_017662	exon8	c.C954T	p.G318G	ACCTGTGCCCTCA	.	PASS	Atlas-SNP
APOC4	346	hgsc.bcm.edu	37	19	45448465	45448465	+	Missense_Mutation	SNP	T	T	G	rs5167	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	48	76	0	0.527473	0	G|0.427;N|0.000	0.427	strong	.	APOC4	6	.	NM_001646	exon3	c.T287G	p.L96R	GTCCGCTCACCAA	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201448	24201448	+	Silent	SNP	C	C	T	rs3003336	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	39	57	0	0.410526	0	C|0.364;T|0.636	0.636	strong	CNR2,NS,carcinoma,0,1	CNR2	78	1	NM_001841	exon2	c.G660A	p.V220V	GCTGGCCACATGC	.	PASS	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	37	5	163099	163099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	76	147	0	0.550725	0	.	.	none	.	PLEKHG4B	167	.	NM_052909	exon11	c.C1844T	p.A615V	CCCTTGCCCAGAG	.	PASS	Atlas-SNP
OR52E2	119678	hgsc.bcm.edu	37	11	5080337	5080337	+	Missense_Mutation	SNP	T	T	C	rs61746343	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	27	67	0	0.385714	0	T|0.770;C|0.230	0.230	strong	.	OR52E2	63	.	NM_001005164	exon1	c.A521G	p.H174R	ATTACATGATTCC	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52777578	52777578	+	Missense_Mutation	SNP	C	C	T	rs1613931	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	40	105	1	0.40404	0.00952381	C|0.686;T|0.314	0.314	strong	KRT84,colon,carcinoma,0,1	KRT84	61	1	NM_033045	exon2	c.G551A	p.R184Q	AGGAACCGAACCT	.	scavenged	Atlas-SNP
NLN	57486	hgsc.bcm.edu	37	5	65108215	65108215	+	Silent	SNP	A	A	G	rs2254485	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	26	43	0	0.565217	0	A|0.272;G|0.728	0.728	strong	.	NLN	51	.	NM_020726	exon12	c.A1977G	p.P659P	GAATCCAGAGGTA	.	PASS	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	37	1	223177574	223177574	+	Silent	SNP	A	A	G	rs2609355	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	86	153	0	0.5375	0	A|0.752;G|0.248	0.248	strong	.	DISP1	145	.	NM_032890	exon10	c.A2835G	p.K945K	TTATAAAGAGGTG	.	PASS	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40368330	40368330	+	Missense_Mutation	SNP	C	C	T	rs74540349	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	74	241	0	0.43787	0	C|0.827;T|0.173	0.173	strong	FCGBP,NS,carcinoma,0,1	FCGBP	416	1	NM_003890	exon28	c.G13018A	p.E4340K	AGTCTTCGATGAC	.	PASS	Atlas-SNP
LSS	4047	hgsc.bcm.edu	37	21	47614443	47614443	+	Silent	SNP	A	A	G	rs2254522	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	37	58	0	0.552239	0	A|0.712;C|0.002	.	strong	.	LSS	50	.	NM_001001438	exon20	c.T1950C	p.H650H	TGTGTTATGGATC	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89350911	89350911	+	Missense_Mutation	SNP	G	G	C	rs145694621	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	91	226	0	0.486631	0	G|0.988;C|0.012	0.012	strong	.	ANKRD11	195	.	NM_001256183	exon9	c.C2039G	p.T680S	TTTTCAGTGGAAA	.	PASS	Atlas-SNP
ZNF385D	79750	hgsc.bcm.edu	37	3	21462754	21462754	+	Silent	SNP	A	A	G	rs451242	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	41	42	0	1	0	G|0.765;A|0.235	0.765	strong	.	ZNF385D	93	.	NM_024697	exon8	c.T1140C	p.P380P	GGGTCCAGGAGCT	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79320847	79320847	+	Missense_Mutation	SNP	G	G	C	rs2077181	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	59	115	0	0.546296	0	G|0.744;C|0.256	0.256	strong	.	PRUNE2	331	.	NM_015225	exon8	c.C6343G	p.Q2115E	TCTCTTGCTTTGC	.	PASS	Atlas-SNP
CLDN16	10686	hgsc.bcm.edu	37	3	190106074	190106074	+	Missense_Mutation	SNP	G	G	C	rs3214506	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	218	218	209	0	1	0	G|0.753;C|0.247	0.247	strong	.	CLDN16	59	.	NM_006580	exon1	c.G166C	p.A56P	GCCAGGGCTGGTG	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85978958	85978958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	36	117	0	0.45	0	.	.	none	CDHR1_ENST00000332904,colon,carcinoma,0,3	CDHR1	122	3	NM_001171971	exon17	c.G2164A	p.E722K	CACTGCGAAATTG	.	PASS	Atlas-SNP
NIPAL4	348938	hgsc.bcm.edu	37	5	156899925	156899925	+	Missense_Mutation	SNP	C	C	T	rs61743233	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	24	41	0	0.615385	0	C|0.922;T|0.078	0.078	strong	.	NIPAL4	48	.	NM_001099287	exon6	c.C1358T	p.S453L	GCACCTCATCACC	.	PASS	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55540141	55540141	+	Silent	SNP	C	C	T	rs114557304	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	98	201	0	0.466667	0	C|0.970;T|0.030	0.030	strong	.	RP1	429	.	NM_006269	exon4	c.C3699T	p.S1233S	AATCTCCTCTTTG	.	PASS	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	37	6	165895824	165895824	+	Silent	SNP	T	T	C	rs9459421	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	62	170	0	0.43662	0	T|0.906;C|0.094	0.094	strong	.	PDE10A	154	.	NM_001130690	exon3	c.A204G	p.S68S	AGGAGCTGATTCA	.	PASS	Atlas-SNP
ANK1	286	hgsc.bcm.edu	37	8	41553928	41553928	+	Silent	SNP	C	C	G	rs504574	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	68	45	0	1	0	C|0.627;G|0.373	0.373	strong	ANK1_ENST00000265709,NS,carcinoma,0,4	ANK1	497	4	NM_001142446	exon27	c.G3036C	p.L1012L	GCTGGCCAGGCCC	.	PASS	Atlas-SNP
SLC26A8	116369	hgsc.bcm.edu	37	6	35911856	35911856	+	Missense_Mutation	SNP	G	G	A	rs61741366	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	303	138	275	0	0.455446	0	G|0.993;A|0.007	0.007	strong	.	SLC26A8	95	.	NM_052961	exon20	c.C2734T	p.P912S	GGTTGGGCTCCAT	.	PASS	Atlas-SNP
METTL2B	55798	hgsc.bcm.edu	37	7	128117227	128117227	+	Missense_Mutation	SNP	G	G	A	rs2288557	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	58	129	0	0.491525	0	G|0.942;A|0.058	0.058	strong	.	METTL2B	34	.	NM_018396	exon2	c.G202A	p.V68I	AAACAAGGTGCGC	.	PASS	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	37	5	140214361	140214361	+	Silent	SNP	G	G	A	rs17844307	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	470	81	349	0	0.17234	0	G|0.981;A|0.019	0.019	strong	PCDHA7_ENST00000525929,NS,carcinoma,+1,4	PCDHA7	367	4	NM_031852	exon1	c.G393A	p.P131P	CCCTCCGGTGTTC	.	PASS	Atlas-SNP
MS4A13	503497	hgsc.bcm.edu	37	11	60296879	60296879	+	Silent	SNP	C	C	T	rs11230364	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	64	151	0	0.496124	0	C|0.906;T|0.094	0.094	strong	.	MS4A13	27	.	NM_001012417	exon6	c.C348T	p.Y116Y	CTTCTACGGTTTG	.	PASS	Atlas-SNP
OSBPL5	114879	hgsc.bcm.edu	37	11	3141744	3141744	+	Silent	SNP	C	C	T	rs34950527	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	113	126	0	0.991228	0	C|0.870;T|0.130	0.130	strong	OSBPL5,NS,carcinoma,0,1	OSBPL5	78	1	NM_020896	exon6	c.G513A	p.L171L	GCAGTGCAGCAGC	.	PASS	Atlas-SNP
RTTN	25914	hgsc.bcm.edu	37	18	67718688	67718688	+	Missense_Mutation	SNP	A	A	G	rs4891392	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	35	41	0	1	0	A|0.188;G|0.812	0.812	strong	.	RTTN	184	.	NM_173630	exon39	c.T5282C	p.F1761S	GTAACAAACGGGA	.	PASS	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	37	17	5284770	5284770	+	Silent	SNP	G	G	A	rs1065483	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	44	89	0	0.427184	0	G|0.390;A|0.610	0.610	strong	.	RABEP1	59	.	NM_004703	exon17	c.G2457A	p.R819R	CCAGAGGGATTTT	.	PASS	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	37	12	109838954	109838954	+	Silent	SNP	C	C	T	rs138935511	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	45	89	0	0.473684	0	C|0.999;T|0.001	0.001	strong	.	MYO1H	98	.	NM_001101421	exon5	c.C579T	p.V193V	AGTTGTCTACCAA	.	PASS	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	37	15	45446156	45446156	+	Missense_Mutation	SNP	C	C	T	rs2458236	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	97	107	0	0.979798	0	C|0.431;N|0.000	.	strong	DUOX1,NS,carcinoma,0,1	DUOX1	125	1	NM_017434	exon28	c.C3532T	p.L1178F	TCTGAGCTCCCCC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214814582	214814582	+	Silent	SNP	G	G	A	rs3795520	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	40	84	0	0.47619	0	G|0.914;A|0.086	0.086	strong	.	CENPF	321	.	NM_016343	exon12	c.G2901A	p.R967R	TAAAAGGGAAATT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152284505	152284505	+	Missense_Mutation	SNP	C	C	G	rs201137357	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	384	24	307	0	0.0625	0	.	.	weak	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.G2857C	p.E953Q	GTCCCTCACTGTC	.	scavenged	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151672812	151672812	+	Missense_Mutation	SNP	G	G	A	rs3734797	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	33	54	0	0.485294	0	G|0.961;A|0.039	0.039	strong	.	AKAP12	170	.	NM_005100	exon4	c.G3286A	p.V1096I	TTGAAAGTAGATG	.	PASS	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	37	5	52351413	52351413	+	Silent	SNP	G	G	A	rs1062535	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	46	103	0	0.46	0	G|0.627;A|0.373	0.373	strong	.	ITGA2	211	.	NM_002203	exon8	c.G825A	p.T275T	TGCTACGAAAGTA	.	PASS	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	37	18	77473086	77473086	+	Silent	SNP	G	G	A	rs599554	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	65	127	0	0.492424	0	A|0.215;C|0.003	0.215	strong	.	CTDP1	67	.	NM_004715	exon7	c.G978A	p.T326T	GGGCACGGGTGAT	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43546509	43546509	+	Missense_Mutation	SNP	G	G	A	rs111996953	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	58	98	0	0.446154	0	G|0.943;A|0.057	0.057	strong	.	UMODL1	186	.	NM_173568	exon17	c.G3586A	p.G1196S	CAGGAGGGCATCA	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150901597	150901597	+	Silent	SNP	G	G	C	rs3734047	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	30	39	0	0.526316	0	G|0.858;C|0.142	0.142	strong	.	FAT2	465	.	NM_001447	exon18	c.C10557G	p.V3519V	GACATGGACACGG	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133971307	133971307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	4	103	0	0.0347826	0	.	.	none	NCKAP5,NS,carcinoma,0,2	NCKAP5	322	2	NM_207481	exon5	c.G188A	p.R63K	CTTGTTCTTTGGG	.	scavenged	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	37	1	156499969	156499969	+	Silent	SNP	T	T	C	rs1171566	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	98	122	0	0.989899	0	T|0.489;C|0.511	0.511	strong	IQGAP3,NS,carcinoma,0,1	IQGAP3	146	1	NM_178229	exon34	c.A4332G	p.L1444L	TCGGCGTAGGTTC	.	PASS	Atlas-SNP
PIGZ	80235	hgsc.bcm.edu	37	3	196674307	196674307	+	Missense_Mutation	SNP	C	C	T	rs17855662	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	26	50	0	0.541667	0	C|0.948;T|0.052	0.052	strong	.	PIGZ	34	.	NM_025163	exon3	c.G1461A	p.M487I	CCCCCCCATGTCC	.	PASS	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	37	1	204589101	204589101	+	Missense_Mutation	SNP	G	G	A	rs3789044	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	64	107	0	0.537815	0	G|0.822;A|0.178	0.178	strong	LRRN2,brain,primitive_neuroectodermal_tumour-medulloblastoma,+1,2	LRRN2	81	2	NM_006338	exon3	c.C20T	p.P7L	AAGAGTGGGGCCA	.	PASS	Atlas-SNP
TNK1	8711	hgsc.bcm.edu	37	17	7286326	7286326	+	Silent	SNP	T	T	A	rs1554948	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	53	95	0	0.53	0	T|0.623;A|0.377	0.377	strong	.	TNK1	31	.	NM_003985	exon2	c.T81A	p.L27L	CATCCTTGAGGAG	.	PASS	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17108053	17108053	+	Missense_Mutation	SNP	C	C	T	rs3745339	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	104	258	0	0.429752	0	C|0.750;T|0.250	0.250	strong	.	CPAMD8	192	.	NM_015692	exon11	c.G1104A	p.M368I	GGTCACCATGGCC	.	PASS	Atlas-SNP
TRIM48	79097	hgsc.bcm.edu	37	11	55032663	55032663	+	Missense_Mutation	SNP	T	T	C	rs200778682	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	689	17	651	13	0.0246734	0.0199693	T|0.996;C|0.004	0.004	strong	TRIM48_ENST00000417545,NS,carcinoma,0,4	TRIM48	149	4	NM_024114	exon2	c.T332C	p.I111T	GTGGCATTCACAG	.	scavenged	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214814995	214814995	+	Missense_Mutation	SNP	C	C	T	rs12067133	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	90	215	0	0.424528	0	C|0.915;T|0.085	0.085	strong	.	CENPF	321	.	NM_016343	exon12	c.C3314T	p.T1105I	TGGAGACAGTGCA	.	PASS	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	37	5	135391374	135391374	+	Silent	SNP	C	C	T	rs1133170	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	25	59	0	0.446429	0	C|0.738;T|0.262	0.262	strong	TGFBI,NS,carcinoma,+2,1	TGFBI	76	1	NM_000358	exon11	c.C1416T	p.L472L	GAGCCTCTGCATT	.	PASS	Atlas-SNP
OR10H2	26538	hgsc.bcm.edu	37	19	15838972	15838972	+	Missense_Mutation	SNP	T	T	A	rs61733719	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	107	295	0	0.442149	0	T|0.581;A|0.419	0.419	strong	OR10H2,NS,carcinoma,-1,1	OR10H2	59	1	NM_013939	exon1	c.T119A	p.L40Q	CGCTGCTGGGCAA	.	PASS	Atlas-SNP
DRD5	1816	hgsc.bcm.edu	37	4	9784550	9784550	+	Silent	SNP	G	G	A	rs2227844	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	3	34	1	0.0909091	0.0294118	G|0.885;A|0.115	0.115	strong	DRD5,colon,carcinoma,0,2	DRD5	119	2	NM_000798	exon1	c.G897A	p.S299S	CCTGTCGGTGATC	.	scavenged	Atlas-SNP
CNN2	1265	hgsc.bcm.edu	37	19	1032689	1032689	+	Silent	SNP	G	G	T	rs1141534	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	34	42	0	0.708333	0	G|0.862;T|0.138	0.138	strong	.	CNN2	26	.	NM_201277	exon4	c.G384T	p.A128A	CCTGGCGGGGAAG	.	PASS	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	37	8	143996553	143996553	+	Silent	SNP	G	G	A	rs72552275	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	193	180	1	0.979695	0.00555556	G|0.655;A|0.345	0.345	strong	CYP11B2,rectum,carcinoma,0,1	CYP11B2	107	1	NM_000498	exon3	c.C504T	p.F168F	CTGGGAGAAGTCC	.	PASS	Atlas-SNP
C6orf201	404220	hgsc.bcm.edu	37	6	4087934	4087934	+	Missense_Mutation	SNP	G	G	C	rs619483	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	31	82	0	0.476923	0	G|0.746;C|0.254	0.254	strong	.	C6orf201	17	.	NM_001085401	exon2	c.G59C	p.R20P	ATTCCCGCAAGAG	.	PASS	Atlas-SNP
C8orf44	56260	hgsc.bcm.edu	37	8	67592152	67592152	+	Missense_Mutation	SNP	T	T	C	rs1057463	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	45	61	0	0.616438	0	T|0.781;C|0.219	0.219	strong	.	C8orf44	18	.	NM_019607	exon3	c.T443C	p.F148S	AAGGCTTCTGGAG	.	PASS	Atlas-SNP
C3orf20	84077	hgsc.bcm.edu	37	3	14755617	14755617	+	Missense_Mutation	SNP	C	C	G	rs6790129	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	56	153	0	0.424242	0	C|0.582;G|0.418	0.418	strong	.	C3orf20	109	.	NM_032137	exon8	c.C1264G	p.L422V	CTGGCCCTATTCA	.	PASS	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145112983	145112983	+	Missense_Mutation	SNP	C	C	T	rs55916375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	55	101	0	0.597826	0	C|0.947;T|0.053	0.053	strong	.	OPLAH	78	.	NM_017570	exon8	c.G1018A	p.V340I	GGGTGACGCCAGC	.	PASS	Atlas-SNP
CWC27	10283	hgsc.bcm.edu	37	5	64097145	64097145	+	Missense_Mutation	SNP	C	C	G	rs7735338	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	102	115	0	0.990291	0	C|0.646;G|0.354	0.354	strong	.	CWC27	47	.	NM_005869	exon9	c.C766G	p.P256A	GATGCACCAGATT	.	PASS	Atlas-SNP
LPAR1	1902	hgsc.bcm.edu	37	9	113637854	113637854	+	Silent	SNP	G	G	A	rs3739709	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	80	183	0	0.473373	0	G|0.863;A|0.137	0.137	strong	LPAR1,NS,carcinoma,-1,2	LPAR1	48	2	NM_001401	exon4	c.C942T	p.R314R	TTTGTCGCGGTAG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276699	152276699	+	Missense_Mutation	SNP	A	A	G	rs3126076	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	300	68	384	0	0.226667	0	A|0.167;G|0.833	0.833	weak	.	FLG	900	.	NM_002016	exon3	c.T10663C	p.W3555R	CAGACCACCTCTC	.	PASS	Atlas-SNP
SLC25A27	9481	hgsc.bcm.edu	37	6	46632594	46632594	+	Missense_Mutation	SNP	T	T	C	rs35884480	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	29	92	0	0.345238	0	T|0.951;C|0.049	0.049	strong	.	SLC25A27	22	.	NM_001204051	exon5	c.T590C	p.I197T	CCAATATACAAAG	.	PASS	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151674593	151674593	+	Missense_Mutation	SNP	G	G	T	rs3734795	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	45	122	0	0.494505	0	G|0.873;T|0.127	0.127	strong	.	AKAP12	170	.	NM_005100	exon4	c.G5067T	p.E1689D	AATAGAGAAGTCA	.	PASS	Atlas-SNP
G6PC2	57818	hgsc.bcm.edu	37	2	169764176	169764176	+	Missense_Mutation	SNP	G	G	C	rs492594	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	375	179	376	0	0.477333	0	G|0.584;C|0.416	0.416	strong	G6PC2,NS,carcinoma,0,1	G6PC2	44	1	NM_021176	exon5	c.G655C	p.V219L	TTTGCAGTTGGCT	.	PASS	Atlas-SNP
CDON	50937	hgsc.bcm.edu	37	11	125889526	125889526	+	Missense_Mutation	SNP	C	C	T	rs3740909	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	55	125	1	0.56701	0.008	C|0.896;N|0.000	.	strong	CDON,NS,carcinoma,0,1	CDON	137	1	NM_016952	exon4	c.G484A	p.E162K	AATGTTCCAGCCA	.	scavenged	Atlas-SNP
ROM1	6094	hgsc.bcm.edu	37	11	62381808	62381808	+	Silent	SNP	G	G	C	rs1801144	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	45	115	1	0.368852	0.00869565	G|0.727;C|0.273	0.273	strong	ROM1,rectum,carcinoma,0,1	ROM1	32	1	NM_000327	exon2	c.G669C	p.R223R	ACCCCGGCCTTGC	.	scavenged	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	37	21	47704896	47704896	+	Missense_Mutation	SNP	G	G	A	rs9975588	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	21	35	0	0.403846	0	G|0.707;A|0.293	0.293	strong	.	MCM3AP	146	.	NM_003906	exon1	c.C305T	p.S102L	ACAGATGAACTTG	.	PASS	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	37	4	76811175	76811175	+	Missense_Mutation	SNP	G	G	T	rs28436183	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	101	229	0	0.442982	0	G|0.859;T|0.141	0.141	strong	.	PPEF2	108	.	NM_006239	exon5	c.C352A	p.R118S	AGAGGCGTGGCCC	.	PASS	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	37	5	65350374	65350374	+	Silent	SNP	A	A	G	rs36303	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	59	96	0	0.495798	0	A|0.830;G|0.170	0.170	strong	.	ERBB2IP	120	.	NM_001253699	exon21	c.A3228G	p.R1076R	CCAGCGACAAAGT	.	PASS	Atlas-SNP
TMEM127	55654	hgsc.bcm.edu	37	2	96919642	96919642	+	Silent	SNP	C	C	T	rs3852673	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	77	155	0	0.5	0	C|0.874;T|0.126	0.126	strong	TMEM127,NS,carcinoma,-1,2	TMEM127	13	2	NM_001193304	exon4	c.G621A	p.A207A	CTCCAGCGCCTGC	.	PASS	Atlas-SNP
CEP72	55722	hgsc.bcm.edu	37	5	639231	639231	+	Missense_Mutation	SNP	C	C	A	rs12522955	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	103	192	0	0.556757	0	C|0.877;A|0.123	0.123	strong	.	CEP72	53	.	NM_018140	exon8	c.C1234A	p.P412T	GCTCTACCCGGGA	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	37	7	20768077	20768077	+	Missense_Mutation	SNP	A	A	T	rs117497357	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	38	81	0	0.436782	0	A|0.970;T|0.030	0.030	strong	.	ABCB5	357	.	NM_001163941	exon23	c.A2866T	p.I956L	ATGTTCATGTAAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179457147	179457147	+	Missense_Mutation	SNP	G	G	A	rs16866406	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	67	150	0	0.51938	0	G|0.808;A|0.191	0.191	strong	.	TTN	18412	.	NM_001267550	exon301	c.C59585T	p.P19862L	CCAGCTGGATTCT	.	PASS	Atlas-SNP
LPA	4018	hgsc.bcm.edu	37	6	161007496	161007496	+	Missense_Mutation	SNP	G	G	C	rs7765781	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	28	90	0	0.337349	0	G|0.582;C|0.418	0.418	strong	.	LPA	237	.	NM_005577	exon26	c.C4114G	p.L1372V	AAGGAAGCTCTGT	.	PASS	Atlas-SNP
GRK7	131890	hgsc.bcm.edu	37	3	141535558	141535558	+	Missense_Mutation	SNP	A	A	G	rs36009541	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	110	112	0	0.990991	0	A|0.903;G|0.097	0.097	strong	.	GRK7	65	.	NM_139209	exon4	c.A1328G	p.E443G	ACAGAGAAAAGTC	.	PASS	Atlas-SNP
ACTN4	81	hgsc.bcm.edu	37	19	39196745	39196745	+	Silent	SNP	C	C	T	rs3745859	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	97	0	1	0	C|0.617;T|0.383	0.383	strong	.	ACTN4	69	.	NM_004924	exon5	c.C546T	p.N182N	TAAGAACGTCAAT	.	PASS	Atlas-SNP
BNIP1	662	hgsc.bcm.edu	37	5	172578595	172578595	+	Silent	SNP	T	T	C	rs180928619	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	55	98	0	0.454545	0	T|0.999;C|0.001	0.001	strong	.	BNIP1	30	.	NM_013979	exon3	c.T204C	p.I68I	ATTTATTTGGACT	.	PASS	Atlas-SNP
GOLGA6C	653641	hgsc.bcm.edu	37	15	75562493	75562493	+	Missense_Mutation	SNP	C	C	A	rs2636846		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	356	6	294	0	0.0168539	0	.	.	weak	GOLGA6C_ENST00000300576,bladder,carcinoma,-2,3	GOLGA6C	12	3	NM_001164404	exon18	c.C2035A	p.P679T	AACCCCCCGGTAC	.	scavenged	Atlas-SNP
ME3	10873	hgsc.bcm.edu	37	11	86267678	86267678	+	Silent	SNP	G	G	A	rs4943943	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	47	110	0	0.439252	0	G|0.799;A|0.201	0.201	strong	.	ME3	70	.	NM_006680	exon4	c.C384T	p.D128D	CTCCACGTCCGAA	.	PASS	Atlas-SNP
SPATA6	54558	hgsc.bcm.edu	37	1	48764419	48764419	+	Missense_Mutation	SNP	C	C	T	rs1056042	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	107	225	0	0.436735	0	T|0.304;C|0.696	0.304	strong	SPATA6,NS,carcinoma,0,1	SPATA6	45	1	NM_019073	exon13	c.G1433A	p.C478Y	GAACTACAGGCCT	.	PASS	Atlas-SNP
TEX33	339669	hgsc.bcm.edu	37	22	37387257	37387257	+	Missense_Mutation	SNP	T	T	C	rs9610624	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	119	246	0	0.472222	0	T|0.899;C|0.101	0.101	strong	.	TEX33	25	.	NM_001163857	exon6	c.A806G	p.Y269C	TCTCCATATTTCT	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87489288	87489288	+	Silent	SNP	A	A	G	rs3812646	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	46	128	0	0.403509	0	A|0.937;G|0.063	0.063	strong	GRID1,NS,carcinoma,-1,1	GRID1	204	1	NM_017551	exon9	c.T1317C	p.L439L	CACTTTAAGAGTC	.	PASS	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	37	22	19213091	19213091	+	Silent	SNP	C	C	T	rs367815723		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	33	74	0	0.485294	0	.	.	weak	.	CLTCL1	115	.	NM_001835	exon13	c.G2013A	p.L671L	AGCAGACAGCATG	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370941	240370941	+	Silent	SNP	T	T	C	rs4997329	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	38	156	3	0.275362	0.0192308	T|0.863;C|0.137	0.137	strong	FMN2,caecum,carcinoma,0,1	FMN2	451	1	NM_020066	exon5	c.T2829C	p.P943P	AATACCTCCTCCG	.	scavenged	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37422763	37422763	+	Missense_Mutation	SNP	C	C	T	rs147185003	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	23	41	0	0.353846	0	C|0.999;T|0.001	0.001	strong	.	GRHPR	35	.	NM_012203	exon1	c.C16T	p.L6F	GTGCGACTCATGA	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64656855	64656855	+	Silent	SNP	T	T	C	rs2256191	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	140	151	0	1	0	T|0.498;C|0.502	0.502	strong	.	SYNE2	577	.	NM_182914	exon99	c.T17938C	p.L5980L	GACCAGTTGATCA	.	PASS	Atlas-SNP
KIAA2013	90231	hgsc.bcm.edu	37	1	11983041	11983041	+	Silent	SNP	G	G	A	rs71647021	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	360	170	312	0	0.472222	0	G|0.500;A|0.500	0.500	strong	.	KIAA2013	25	.	NM_138346	exon2	c.C1539T	p.S513S	GCCACGGGACTCC	.	PASS	Atlas-SNP
DNM1L	10059	hgsc.bcm.edu	37	12	32886672	32886672	+	Silent	SNP	A	A	G	rs79393011	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	67	120	0	0.54918	0	A|0.993;G|0.007	0.007	strong	.	DNM1L	52	.	NM_012062	exon13	c.A1470G	p.E490E	AATTGAACTGGCT	.	PASS	Atlas-SNP
MOGAT1	116255	hgsc.bcm.edu	37	2	223574546	223574546	+	Silent	SNP	A	A	G	rs142300173	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	57	158	0	0.487179	0	A|0.998;G|0.002	0.002	strong	.	MOGAT1	47	.	NM_058165	exon6	c.A945G	p.K315K	TAGGAAATTGTTT	.	PASS	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	37	3	66431280	66431280	+	Missense_Mutation	SNP	C	C	T	rs9877201	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	40	69	0	0.493827	0	C|0.879;T|0.121	0.121	strong	LRIG1,NS,carcinoma,0,1	LRIG1	138	1	NM_015541	exon18	c.G2776A	p.G926S	GGCCACCGTGTTC	.	PASS	Atlas-SNP
AKR1E2	83592	hgsc.bcm.edu	37	10	4872930	4872930	+	Missense_Mutation	SNP	G	G	A	rs61745201	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	134	198	0	0.62037	0	A|0.048;C|0.000;G|0.952	0.048	strong	.	AKR1E2	30	.	NM_001271025	exon2	c.G103A	p.D35N	CACTTCGACTGTG	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144946345	144946345	+	Silent	SNP	G	G	A	rs34753358	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	51	119	0	0.459459	0	G|0.685;A|0.315	0.315	strong	EPPK1,NS,carcinoma,-1,2	EPPK1	199	2	NM_031308	exon1	c.C1077T	p.A359A	CTGCTCGGCCACC	.	PASS	Atlas-SNP
ADI1	55256	hgsc.bcm.edu	37	2	3504687	3504687	+	Silent	SNP	A	A	G	rs9950	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	75	151	0	0.462963	0	A|0.473;G|0.527	0.527	strong	ADI1,NS,carcinoma,0,1	ADI1	12	1	NM_018269	exon3	c.T318C	p.D106D	CCTCACATCGAAG	.	PASS	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	37	2	132021946	132021946	+	Missense_Mutation	SNP	G	G	A	rs78598826		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	33	267	1	0.125954	0.00374532	A|1.000;|0.000	1.000	weak	ENSG00000188219,NS,carcinoma,0,4	.	.	4	NM_001083538	exon15	c.G2918A	p.G973D	CCTGTGGCATCCA	.	scavenged	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	37	1	26608867	26608867	+	Missense_Mutation	SNP	C	C	A	rs193142354	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	8	24	0	0.222222	0	C|0.880;A|0.120	0.120	strong	UBXN11,colon,carcinoma,0,2	UBXN11	54	2	NM_183008	exon16	c.G1486T	p.G496C	CGGGACCGGGACT	.	PASS	Atlas-SNP
MYEOV2	150678	hgsc.bcm.edu	37	2	241066280	241066280	+	Silent	SNP	C	C	T	rs4292120	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	157	158	0	0.993671	0	C|0.304;T|0.696	0.696	strong	.	MYEOV2	20	.	NM_138336	exon5	c.G459A	p.E153E	TAGCGCCTCCGCC	.	PASS	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	37	5	54674963	54674963	+	Silent	SNP	T	T	C	rs139182599	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	9	8	11	0	0.888889	0	T|0.997;C|0.003	0.003	strong	.	SKIV2L2	104	.	NM_015360	exon18	c.T1992C	p.N664N	AAAGAATGAAGGA	.	PASS	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	37	6	165703523	165703523	+	Missense_Mutation	SNP	C	C	T	rs17856754	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	48	98	0	0.417391	0	C|0.947;T|0.053	0.053	strong	.	C6orf118	116	.	NM_144980	exon7	c.G1154A	p.R385Q	GTAAGTCGGTTTT	.	PASS	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	37	1	53732315	53732315	+	Silent	SNP	G	G	T	rs2297660	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	46	112	0	0.425926	0	G|0.633;T|0.367	0.367	strong	.	LRP8	58	.	NM_004631	exon9	c.C1257A	p.G419G	GCTCTTGCCAGCT	.	PASS	Atlas-SNP
RNASE3	6037	hgsc.bcm.edu	37	14	21359987	21359987	+	Missense_Mutation	SNP	C	C	G	rs202232277	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	64	147	0	0.484848	0	C|0.999;G|0.001	0.001	weak	.	RNASE3	24	.	NM_002935	exon2	c.C142G	p.P48A	AACCCCCCTCGAT	.	PASS	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	37	12	113319600	113319600	+	Silent	SNP	C	C	T	rs2240194	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	95	0	0.464286	0	C|0.479;T|0.521	0.521	strong	.	RPH3A	98	.	NM_001143854	exon15	c.C1275T	p.N425N	TTCAAACGGCTTG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093054	1093054	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	4	49	0	0.0869565	0	.	.	none	.	MUC2	614	.	NM_002457	exon30	c.C4873G	p.Q1625E	GGCACACAGACCC	.	PASS	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159688948	159688948	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	2	120	0	0.016	0	.	.	none	FNDC1,colon,carcinoma,+1,1	FNDC1	250	1	NM_032532	exon22	c.T5559C	p.P1853P	CCTCCCTACTATT	.	scavenged	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	37	19	19655670	19655670	+	Silent	SNP	C	C	T	rs11669558	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	6	12	0	0.4	0	C|0.874;T|0.126	0.126	strong	.	CILP2	84	.	NM_153221	exon8	c.C2316T	p.S772S	CTTCTCCGCCAAC	.	PASS	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	37	2	241451351	241451351	+	Missense_Mutation	SNP	G	G	A	rs35044862	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	25	50	0	0.510204	0	G|0.841;A|0.159	0.159	strong	.	ANKMY1	112	.	NM_016552	exon10	c.C1946T	p.T649M	GTGTCCGTGCTGT	.	PASS	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	37	11	721931	721931	+	Silent	SNP	C	C	T	rs7949926	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	57	87	0	0.558824	0	C|0.874;T|0.126	0.126	strong	EPS8L2,NS,carcinoma,0,1	EPS8L2	42	1	NM_022772	exon11	c.C924T	p.P308P	ACGGCCCCCCTCT	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48314798	48314798	+	Silent	SNP	G	G	T	rs13233225	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	72	162	0	0.467532	0	G|0.750;T|0.250	0.250	strong	.	ABCA13	1192	.	NM_152701	exon17	c.G5535T	p.G1845G	CCATGGGCTCATG	.	PASS	Atlas-SNP
ZNF410	57862	hgsc.bcm.edu	37	14	74388908	74388908	+	Silent	SNP	T	T	C	rs1127392	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	69	123	0	0.530769	0	A|0.000;C|0.298;T|0.702	0.298	strong	.	ZNF410	25	.	NM_001242924	exon11	c.T1320C	p.D440D	TGATGATGGTAAG	.	PASS	Atlas-SNP
METTL7A	25840	hgsc.bcm.edu	37	12	51319238	51319238	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	50	103	0	0.520833	0	.	.	none	.	METTL7A	19	.	NM_014033	exon1	c.T417C	p.D139D	TGTGGATGTGGTG	.	PASS	Atlas-SNP
MVB12A	93343	hgsc.bcm.edu	37	19	17534540	17534540	+	Missense_Mutation	SNP	G	G	T	rs147706400	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	37	86	0	0.569231	0	G|0.999;T|0.001	0.001	strong	.	.	.	.	NM_138401	exon6	c.G572T	p.G191V	GGCTGGGCTCTCG	.	PASS	Atlas-SNP
C19orf48	84798	hgsc.bcm.edu	37	19	51301456	51301456	+	Missense_Mutation	SNP	G	G	A	rs4802741	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	44	73	0	0.488889	0	G|0.713;A|0.287	0.287	strong	.	C19orf48	11	.	NM_199249	exon5	c.C250T	p.R84C	GGTGGCGTATGGA	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214818223	214818223	+	Missense_Mutation	SNP	T	T	A	rs3748693	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	48	134	0	0.375	0	T|0.799;A|0.201	0.201	strong	.	CENPF	321	.	NM_016343	exon13	c.T5310A	p.H1770Q	TATCCATAATCTT	.	PASS	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	37	7	139797431	139797431	+	Missense_Mutation	SNP	G	G	T	rs6950119	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	51	116	0	0.490385	0	A|0.000;G|0.670;T|0.330	0.330	strong	JHDM1D,NS,carcinoma,0,1	JHDM1D	54	1	NM_030647	exon15	c.C1930A	p.R644S	TCACACGTGTAAA	.	PASS	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	37	2	102851470	102851470	+	Missense_Mutation	SNP	G	G	A	rs75091099	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	73	155	0	0.45625	0	G|0.991;A|0.009	0.009	strong	IL1RL2,NS,carcinoma,-1,1	IL1RL2	118	1	NM_003854	exon11	c.G1411A	p.A471T	CAAATCGCGGTCT	.	PASS	Atlas-SNP
C9orf117	286207	hgsc.bcm.edu	37	9	130475011	130475011	+	Silent	SNP	T	T	C	rs522328	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	78	150	0	0.503226	0	T|0.374;C|0.626	0.626	strong	.	C9orf117	21	.	NM_001012502	exon7	c.T1161C	p.S387S	GGACAGTGACGTT	.	PASS	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	rs200244531		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	361	5	348	1	0.0138504	0.00287356	.	.	weak	TPTE2_ENST00000400230,NS,carcinoma,0,1	TPTE2	225	1	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	scavenged	Atlas-SNP
USP34	9736	hgsc.bcm.edu	37	2	61450409	61450409	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	5	90	0	0.0641026	0	.	.	none	USP34,NS,carcinoma,+2,1	USP34	334	1	NM_014709	exon63	c.G7618C	p.D2540H	CCATGTCAGTCTG	.	PASS	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350674	50350674	+	Silent	SNP	T	T	C	rs3747282	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	42	50	0	1	0	T|0.703;C|0.297	0.297	strong	.	SHROOM4	171	.	NM_020717	exon6	c.A3468G	p.E1156E	CTCCTCTTCCTCC	.	PASS	Atlas-SNP
C16orf62	57020	hgsc.bcm.edu	37	16	19680546	19680546	+	Silent	SNP	T	T	C	rs957676	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	36	106	0	0.45	0	T|0.656;C|0.344	0.344	strong	.	C16orf62	164	.	NM_020314	exon27	c.T2553C	p.D851D	TATTGATGGGAAG	.	PASS	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60897721	60897721	+	Missense_Mutation	SNP	C	C	T	rs3737137	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	77	98	0	0.566176	0	C|0.858;T|0.142	0.142	strong	.	LAMA5	268	.	NM_005560	exon46	c.G6158A	p.R2053H	TGGCAGCGGTCAC	.	PASS	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	37	14	23598976	23598976	+	Silent	SNP	G	G	A	rs17183863	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	59	98	0	0.621053	0	G|0.901;A|0.099	0.099	strong	.	SLC7A8	54	.	NM_012244	exon9	c.C1146T	p.S382S	CATGTCGCTGGTG	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	6997818	6997818	+	Missense_Mutation	SNP	A	A	C	rs12961939	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	24	77	0	0.393443	0	A|0.790;C|0.210	0.210	strong	.	LAMA1	458	.	NM_005559	exon33	c.T4729G	p.S1577A	TCAGAGAAAGAAC	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24393563	24393563	+	Missense_Mutation	SNP	C	C	T	rs16829071	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	71	157	0	0.446541	0	C|0.765;T|0.235	0.235	strong	.	MYOM3	131	.	NM_152372	exon28	c.G3371A	p.R1124Q	AACGGCCGCTCAA	.	PASS	Atlas-SNP
RAB3A	5864	hgsc.bcm.edu	37	19	18313515	18313515	+	Silent	SNP	C	C	T	rs2280342	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	114	200	0	0.530233	0	C|0.966;T|0.034	0.034	strong	.	RAB3A	23	.	NM_002866	exon2	c.G36A	p.K12K	GGACTCCTTCTGC	.	PASS	Atlas-SNP
BCMO1	53630	hgsc.bcm.edu	37	16	81279120	81279120	+	Silent	SNP	T	T	C	rs28370522	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	64	143	0	0.581818	0	T|0.605;C|0.395	0.395	strong	BCMO1,NS,carcinoma,0,1	BCMO1	53	1	NM_017429	exon2	c.T105C	p.N35N	CCGCAATGGGCCT	.	PASS	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	37	6	42992825	42992825	+	Missense_Mutation	SNP	C	C	G	rs3749903	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	47	92	0	0.552941	0	C|0.705;G|0.295	0.295	strong	.	RRP36	20	.	NM_033112	exon2	c.C233G	p.A78G	AACAAGCTTCTAG	.	PASS	Atlas-SNP
SOCS7	30837	hgsc.bcm.edu	37	17	36552190	36552190	+	Missense_Mutation	SNP	A	A	G	rs55687042	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	14	44	0	0.466667	0	A|0.971;G|0.029	0.029	strong	.	SOCS7	22	.	NM_014598	exon9	c.A1715G	p.K572R	TTTCCAAACAGAA	.	PASS	Atlas-SNP
DTL	51514	hgsc.bcm.edu	37	1	212273606	212273606	+	Missense_Mutation	SNP	G	G	A	rs35137676	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	95	205	0	0.443925	0	G|0.975;A|0.025	0.025	strong	DTL,NS,carcinoma,-1,1	DTL	52	1	NM_016448	exon14	c.G1274A	p.S425N	TAACGAGTAGCCA	.	PASS	Atlas-SNP
NUBP2	10101	hgsc.bcm.edu	37	16	1838703	1838703	+	Silent	SNP	G	G	A	rs11540961	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	24	51	0	0.48	0	G|0.949;A|0.051	0.051	strong	NUBP2,NS,carcinoma,+2,2	NUBP2	25	2	NM_012225	exon7	c.G804A	p.A268A	GCCCGCGTGCCTC	.	PASS	Atlas-SNP
GGTLC2	91227	hgsc.bcm.edu	37	22	22989256	22989256	+	Missense_Mutation	SNP	A	A	G	rs2904923	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	143	303	3	0.5	0.00990099	A|0.151;G|0.849	0.849	strong	GGTLC2,NS,carcinoma,0,2	GGTLC2	20	2	NM_199127	exon2	c.A209G	p.E70G	TCAGCGAGATCCT	.	scavenged	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	37	6	31851172	31851172	+	Silent	SNP	G	G	A	rs148424397	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	145	252	0	0.539033	0	G|0.999;A|0.001	0.001	strong	.	EHMT2	45	.	NM_006709	exon23	c.C2961T	p.C987C	CTGGCCGCACAGG	.	PASS	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52887282	52887282	+	Missense_Mutation	SNP	A	A	G	rs324125	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	80	153	0	0.484848	0	A|0.833;G|0.167	0.167	strong	.	ZNF880	45	.	NM_001145434	exon4	c.A449G	p.Y150C	AAATTTATTCTAG	.	PASS	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	37	19	2222327	2222327	+	Silent	SNP	G	G	A	rs373960110		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	80	127	0	0.606061	0	.	.	weak	.	DOT1L	205	.	NM_032482	exon24	c.G3159A	p.A1053A	TGGTGCGGGCAGT	.	PASS	Atlas-SNP
DGAT1	8694	hgsc.bcm.edu	37	8	145542021	145542021	+	Silent	SNP	G	G	A	rs56180335	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	41	94	0	0.37963	0	G|0.956;A|0.044	0.044	strong	.	DGAT1	26	.	NM_012079	exon7	c.C579T	p.G193G	CAGGGAGCCCACT	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982896	57982896	+	Missense_Mutation	SNP	G	G	T	rs2903566	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	61	103	0	0.448529	0	G|0.565;T|0.435	0.435	strong	.	OR1S1	139	.	NM_001004458	exon1	c.G680T	p.S227I	CACTCAGCTTCTT	.	PASS	Atlas-SNP
ADAM33	80332	hgsc.bcm.edu	37	20	3650205	3650205	+	Missense_Mutation	SNP	G	G	A	rs2280090	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	59	110	0	0.460938	0	G|0.871;A|0.129	0.129	strong	.	ADAM33	76	.	NM_025220	exon20	c.C2320T	p.P774S	GCCAGGGCTGTCC	.	PASS	Atlas-SNP
CDSN	1041	hgsc.bcm.edu	37	6	31084191	31084191	+	Missense_Mutation	SNP	T	T	C	rs33941312	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	35	38	0	1	0	T|0.985;C|0.015	0.015	strong	.	CDSN	48	.	NM_001264	exon2	c.A1201G	p.S401G	TAGAACTGCTGGG	.	PASS	Atlas-SNP
HADHA	3030	hgsc.bcm.edu	37	2	26455127	26455127	+	Silent	SNP	G	G	A	rs11552518	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	27	55	0	0.402985	0	G|0.834;C|0.000;A|0.165	0.165	strong	.	HADHA	87	.	NM_000182	exon6	c.C474T	p.Y158Y	TATTCTGTATTGG	.	PASS	Atlas-SNP
THEMIS2	9473	hgsc.bcm.edu	37	1	28209366	28209366	+	Missense_Mutation	SNP	A	A	G	rs3766400	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	60	144	0	0.461538	0	A|0.521;G|0.479	0.479	strong	.	.	.	.	NM_001105556	exon4	c.A1531G	p.K511E	GTTGTGAAGGCCA	.	PASS	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279714	1279714	+	Missense_Mutation	SNP	A	A	G	rs192643610	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	53	111	0	0.638554	0	A|0.924;G|0.076	0.076	strong	TPSB2,rectum,carcinoma,0,1	TPSB2	8	1	NM_024164	exon3	c.T86C	p.V29A	ATGCCCACTCGCT	.	scavenged	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	37	7	87179601	87179601	+	Silent	SNP	A	A	G	rs1128503	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	28	65	0	0.54902	0	A|0.384;G|0.616	0.616	strong	.	ABCB1	263	.	NM_000927	exon13	c.T1236C	p.G412G	GTTCAGACCCTTC	.	PASS	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	37	X	2928125	2928125	+	Silent	SNP	C	C	T	rs79487908	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	107	113	0	1	0	C|0.959;T|0.041	0.041	strong	.	ARSH	72	.	NM_001011719	exon2	c.C147T	p.L49L	GCATCTCGCAGCT	.	PASS	Atlas-SNP
C9orf117	286207	hgsc.bcm.edu	37	9	130475442	130475442	+	Missense_Mutation	SNP	A	A	C	rs497632	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	71	141	0	0.507143	0	A|0.466;C|0.534	0.534	strong	.	C9orf117	21	.	NM_001012502	exon8	c.A1448C	p.Y483S	TGTCATATATCAC	.	PASS	Atlas-SNP
SIRPB1	10326	hgsc.bcm.edu	37	20	1600524	1600524	+	Missense_Mutation	SNP	T	T	C	rs1535882	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	90	63	0	0.989011	0	T|0.729;C|0.271	0.271	strong	SIRPB1_ENST00000279477,NS,adenoma,0,2	SIRPB1	83	2	NM_001083910	exon1	c.A67G	p.R23G	TGAGTCTCCCCAG	.	PASS	Atlas-SNP
TP53BP1	7158	hgsc.bcm.edu	37	15	43712823	43712823	+	Missense_Mutation	SNP	C	C	T	rs28903077	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	47	86	0	0.52809	0	C|0.998;T|0.002	0.002	strong	.	TP53BP1	157	.	NM_001141980	exon21	c.G4361A	p.R1454Q	TCTGTTCGTCTGG	.	PASS	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	37	6	110107517	110107517	+	Missense_Mutation	SNP	T	T	C	rs9885672	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	18	72	0	0.352941	0	T|0.638;C|0.362	0.362	strong	.	FIG4	77	.	NM_014845	exon18	c.T1961C	p.V654A	GTGCTGTGAACTT	.	PASS	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	37	17	42953409	42953409	+	Silent	SNP	A	A	G	rs2289674	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	46	92	0	0.5	0	A|0.799;G|0.201	0.201	strong	.	EFTUD2	85	.	NM_004247	exon10	c.T762C	p.T254T	GCACACAGTGACT	.	PASS	Atlas-SNP
SEL1L2	80343	hgsc.bcm.edu	37	20	13912309	13912309	+	Missense_Mutation	SNP	G	G	A	rs41275404	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	50	133	0	0.387597	0	G|0.910;A|0.090	0.090	strong	SEL1L2,colon,carcinoma,0,1	SEL1L2	103	1	NM_001271539	exon3	c.C223T	p.R75C	TTTTACGTTGATT	.	PASS	Atlas-SNP
STON1	11037	hgsc.bcm.edu	37	2	48807796	48807796	+	Missense_Mutation	SNP	A	A	C	rs17039250	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	58	98	0	0.563107	0	A|0.675;C|0.325	0.325	strong	.	STON1	100	.	NM_001198595	exon3	c.A24C	p.K8N	AGGCAAATGGGTC	.	PASS	Atlas-SNP
CRYGB	1419	hgsc.bcm.edu	37	2	209010558	209010558	+	Silent	SNP	A	A	G	rs2854723	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	129	82	0	1	0	A|0.526;G|0.474	0.474	strong	.	CRYGB	24	.	NM_005210	exon2	c.T192C	p.P64P	GTAGTCAGGGTAC	.	PASS	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	37	7	140227293	140227293	+	Missense_Mutation	SNP	A	A	G	rs6464833	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	49	113	0	0.462264	0	A|0.830;G|0.170	0.170	strong	.	DENND2A	132	.	NM_015689	exon13	c.T2330C	p.I777T	GACAGGATGCTGC	.	PASS	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55582905	55582905	+	Silent	SNP	G	G	T	rs10825114	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	55	127	0	0.491071	0	G|0.809;T|0.191	0.191	strong	PCDH15_ENST00000417177,NS,malignant_melanoma,-2,4	PCDH15	1715	4	NM_001142763	exon35	c.C4602A	p.P1534P	ATAAAGGGGATTA	.	PASS	Atlas-SNP
GALNS	2588	hgsc.bcm.edu	37	16	88884466	88884466	+	Silent	SNP	C	C	T	rs2303271	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	69	70	0	0.985714	0	C|0.573;T|0.427	0.427	strong	.	GALNS	37	.	NM_000512	exon13	c.G1431A	p.E477E	CAAGGCCTCCTGG	.	PASS	Atlas-SNP
UTP14C	9724	hgsc.bcm.edu	37	13	52603896	52603896	+	Missense_Mutation	SNP	G	G	A	rs17402034	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	127	256	0	0.481061	0	G|0.934;A|0.066	0.066	strong	.	UTP14C	67	.	NM_021645	exon2	c.G956A	p.R319H	AGGCTCGCCAAGC	.	PASS	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	37	3	168810874	168810874	+	Silent	SNP	C	C	T	rs17466625	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	47	94	0	0.465347	0	C|0.871;T|0.129	0.129	strong	.	MECOM	216	.	NM_004991	exon14	c.G3036A	p.S1012S	ATGAGGCGACGAT	.	PASS	Atlas-SNP
EXO1	9156	hgsc.bcm.edu	37	1	242042301	242042301	+	Missense_Mutation	SNP	G	G	A	rs1047840	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	53	128	0	0.490741	0	G|0.616;A|0.384	0.384	strong	EXO1,NS,carcinoma,0,1	EXO1	103	1	NM_006027	exon11	c.G1765A	p.E589K	TCTTTTGAGAGCA	.	PASS	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	37	17	73826120	73826120	+	Silent	SNP	C	C	T	rs35628234	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	66	170	0	0.392857	0	C|0.923;T|0.077	0.077	strong	.	UNC13D	68	.	NM_199242	exon30	c.G2943A	p.E981E	AAAGGTCTCATCA	.	PASS	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	37	1	171083174	171083174	+	Silent	SNP	C	C	T	rs909530	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	77	156	0	0.425414	0	C|0.665;T|0.335	0.335	strong	FMO3,NS,carcinoma,0,1	FMO3	73	1	NM_006894	exon7	c.C855T	p.N285N	ATTTAACGATGAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179605180	179605180	+	Silent	SNP	C	C	T	rs746578	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	102	173	0	0.523077	0	T|0.233;C|0.757;A|0.010	0.233	strong	TTN_ENST00000359218,colon,carcinoma,-1,1	TTN	18412	1	NM_001267550	exon48	c.G12780A	p.A4260A	GATGAGCGCACTT	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579419	55579419	+	Silent	SNP	T	T	C	rs34948392	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	406	193	431	1	0.475369	0.00232019	T|0.896;C|0.104	0.104	strong	OR5L1,NS,carcinoma,+2,3	OR5L1	145	3	NM_001004738	exon1	c.T477C	p.H159H	GATTCATTTGTGC	.	PASS	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	37	13	60240829	60240829	+	Silent	SNP	C	C	T	rs41293422	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	95	149	0	0.533708	0	C|0.955;T|0.045	0.045	strong	.	DIAPH3	139	.	NM_001042517	exon28	c.G3471A	p.A1157A	ATTACACGCTTCC	.	PASS	Atlas-SNP
HPN	3249	hgsc.bcm.edu	37	19	35550878	35550878	+	Silent	SNP	C	C	T	rs45512696	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	58	92	0	0.552381	0	C|0.904;T|0.096	0.096	strong	.	HPN	45	.	NM_182983	exon6	c.C391T	p.L131L	CAGAGGCTGCTGG	.	PASS	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	37	22	24717518	24717518	+	Silent	SNP	G	G	A	rs3747113	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	27	70	2	0.473684	0.0285714	G|0.777;A|0.223	0.223	strong	SPECC1L,NS,carcinoma,0,1	SPECC1L	85	1	NM_001145468	exon4	c.G570A	p.T190T	TCTCACGCTGGCA	.	scavenged	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225684166	225684166	+	Silent	SNP	A	A	G	rs7572725	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	58	119	0	0.513274	0	A|0.757;G|0.243	0.243	strong	.	DOCK10	308	.	NM_014689	exon29	c.T3264C	p.L1088L	TACCTTAAGGTCA	.	PASS	Atlas-SNP
ATP1B1	481	hgsc.bcm.edu	37	1	169094216	169094216	+	Silent	SNP	G	G	A	rs61742560	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	76	123	0	0.520548	0	G|0.994;A|0.006	0.006	strong	.	ATP1B1	29	.	NM_001677	exon3	c.G321A	p.R107R	AGTTAGGTTCCTG	.	PASS	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	37	4	77661017	77661017	+	Missense_Mutation	SNP	A	A	C	rs76656494	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	28	58	0	0.451613	0	A|0.988;C|0.012	0.012	strong	.	SHROOM3	134	.	NM_020859	exon5	c.A1691C	p.E564A	TGCCTGAAAATGA	.	PASS	Atlas-SNP
LRFN3	79414	hgsc.bcm.edu	37	19	36430368	36430368	+	Missense_Mutation	SNP	C	C	T	rs34933126	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	41	74	0	0.445652	0	C|0.938;T|0.062	0.062	strong	.	LRFN3	43	.	NM_024509	exon2	c.C41T	p.A14V	CGCTGGCCCCTGC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1084821	1084821	+	Silent	SNP	T	T	C	rs10794288	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	55	147	0	0.426357	0	T|0.699;C|0.301	0.301	strong	.	MUC2	614	.	NM_002457	exon20	c.T2616C	p.D872D	CTTTGATGGGAAG	.	PASS	Atlas-SNP
OR1E1	8387	hgsc.bcm.edu	37	17	3301549	3301549	+	Silent	SNP	G	G	A	rs150988	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	342	186	319	0	0.54386	0	G|0.602;A|0.398	0.398	strong	.	OR1E1	37	.	NM_003553	exon1	c.C156T	p.D52D	ATGGGAGTCCAGT	.	PASS	Atlas-SNP
TSHR	7253	hgsc.bcm.edu	37	14	81574959	81574959	+	Silent	SNP	A	A	G	rs3783942	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	91	137	1	0.98913	0.00729927	A|0.387;G|0.613	0.613	strong	.	TSHR	462	.	NM_001142626	exon9	c.A759G	p.L253L	TAGGCTACCTCTT	.	PASS	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	37	1	247006051	247006051	+	Missense_Mutation	SNP	G	G	C	rs12410563	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	67	66	0	1	0	G|0.784;C|0.216	0.216	strong	.	AHCTF1	187	.	NM_015446	exon35	c.C6580G	p.L2194V	TTCCCAGAGTTTC	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197072420	197072420	+	Silent	SNP	T	T	C	rs41310925	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	107	232	1	0.502347	0.00431034	T|0.699;C|0.301	0.301	strong	.	ASPM	444	.	NM_018136	exon18	c.A5961G	p.Q1987Q	CTTCTTTTGTTGC	.	PASS	Atlas-SNP
INSL5	10022	hgsc.bcm.edu	37	1	67266756	67266756	+	Missense_Mutation	SNP	T	T	A	rs549148	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	88	0	1	0	T|0.146;A|0.854	0.854	strong	.	INSL5	26	.	NM_005478	exon1	c.A149T	p.Q50L	CCCTCCTGATGCC	.	PASS	Atlas-SNP
ZFYVE28	57732	hgsc.bcm.edu	37	4	2307121	2307121	+	Missense_Mutation	SNP	G	G	A	rs61742112	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	59	95	0	0.491667	0	A|0.086;C|0.000;G|0.914	0.086	strong	.	ZFYVE28	79	.	NM_020972	exon8	c.C946T	p.P316S	CCTCAGGGGGGAG	.	PASS	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	37	17	28407861	28407861	+	Silent	SNP	G	G	A	rs147629201	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	64	125	0	0.463768	0	G|0.990;A|0.010	0.010	strong	.	EFCAB5	122	.	NM_198529	exon17	c.G3288A	p.K1096K	TAATAAGCATGAT	.	PASS	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139279173	139279173	+	Silent	SNP	G	G	A	rs10781510	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	14	30	0	0.35	0	G|0.640;A|0.360	0.360	strong	.	SNAPC4	82	.	NM_003086	exon13	c.C1419T	p.V473V	CTTACCGACACCA	.	PASS	Atlas-SNP
OR10H3	26532	hgsc.bcm.edu	37	19	15853150	15853150	+	Silent	SNP	C	C	T	rs16980824	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	43	68	0	0.5375	0	C|0.720;T|0.280	0.280	strong	.	OR10H3	53	.	NM_013938	exon1	c.C948T	p.S316S	AAGCTCCTAATGG	.	PASS	Atlas-SNP
HN1	51155	hgsc.bcm.edu	37	17	73132265	73132265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	2	161	0	0.0115607	0	.	.	none	HN1_ENST00000409753,NS,carcinoma,0,3	HN1	17	3	NM_016185	exon5	c.G397A	p.V133M	GGGCCACCGGGCT	.	scavenged	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	37	7	83037731	83037731	+	Missense_Mutation	SNP	C	C	G	rs61729612	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	94	189	0	0.479592	0	C|0.877;G|0.123	0.123	strong	.	SEMA3E	125	.	NM_012431	exon6	c.G623C	p.R208P	GCCAGTCGCCCCA	.	PASS	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18776784	18776784	+	Missense_Mutation	SNP	G	G	A	rs2060362	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	19	18	0	0.527778	0	G|0.973;A|0.027	0.027	strong	.	ADAMTSL1	306	.	NM_001040272	exon19	c.G2557A	p.G853R	GGGCCCGGGCGGC	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183085755	183085755	+	Missense_Mutation	SNP	A	A	G	rs20563	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	55	107	0	0.52381	0	A|0.491;G|0.509	0.509	strong	.	LAMC1	176	.	NM_002293	exon7	c.A1372G	p.I458V	TGTAATATTGAAA	.	PASS	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	37	18	25543387	25543387	+	Silent	SNP	G	G	A	rs1041985	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	58	114	0	0.439394	0	G|0.706;A|0.294	0.294	strong	CDH2,colon,carcinoma,-2,2	CDH2	194	2	NM_001792	exon15	c.C2448T	p.A816A	GGGCTCGGCGTGG	.	PASS	Atlas-SNP
GNLY	10578	hgsc.bcm.edu	37	2	85924729	85924729	+	Missense_Mutation	SNP	C	C	T	rs11127	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	118	143	1	1	0.00699301	C|0.678;N|0.000	.	strong	.	GNLY	29	.	NM_006433	exon4	c.C356T	p.T119I	GAGTTACCCAGGG	.	PASS	Atlas-SNP
SOAT1	6646	hgsc.bcm.edu	37	1	179310439	179310439	+	Silent	SNP	C	C	T	rs7547733	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	49	105	0	0.449541	0	C|0.881;T|0.119	0.119	strong	.	SOAT1	53	.	NM_003101	exon7	c.C774T	p.F258F	TATATTCGAGCAG	.	PASS	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	37	9	101068580	101068580	+	Silent	SNP	G	G	A	rs2304389	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	135	239	1	0.494505	0.0041841	G|0.831;A|0.169	0.169	strong	GABBR2,NS,malignant_melanoma,-1,1	GABBR2	126	1	NM_005458	exon15	c.C2052T	p.P684P	GAGTGCGGGGATG	.	PASS	Atlas-SNP
PIEZO2	63895	hgsc.bcm.edu	37	18	10672782	10672782	+	Silent	SNP	T	T	A	rs34134242	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	58	147	0	0.464	0	T|0.990;A|0.010	0.010	strong	.	.	.	.	NM_022068	exon51	c.A7911T	p.G2637G	TCTGTTTCCAGTC	.	PASS	Atlas-SNP
P2RY12	64805	hgsc.bcm.edu	37	3	151056616	151056616	+	Silent	SNP	G	G	A	rs6785930	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	54	105	0	0.556701	0	G|0.736;A|0.264	0.264	strong	P2RY12,NS,malignant_melanoma,-1,1	P2RY12	36	1	NM_022788	exon3	c.C18T	p.N6N	GGTGAGGTTGTCG	.	PASS	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	37	11	4661826	4661826	+	Missense_Mutation	SNP	T	T	C	rs79020081	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	77	150	0	0.542253	0	T|0.938;C|0.062	0.062	strong	.	OR51D1	49	.	NM_001004751	exon1	c.T806C	p.I269T	CCCTCATTGGGCT	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89857935	89857935	+	Missense_Mutation	SNP	G	G	A	rs11646374	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	27	69	0	0.421875	0	G|0.932;A|0.068	0.068	strong	.	FANCA	99	.	NM_000135	exon14	c.C1235T	p.A412V	AAACGCGCCACCC	.	PASS	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	37	13	25272807	25272807	+	Silent	SNP	C	C	T	rs148844496	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	22	33	0	0.511628	0	C|0.999;T|0.001	0.001	strong	.	ATP12A	172	.	NM_001185085	exon12	c.C1542T	p.H514H	CATCCACGAGATG	.	PASS	Atlas-SNP
SLC35E2	9906	hgsc.bcm.edu	37	1	1670432	1670432	+	Silent	SNP	T	T	C	rs17339526		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	987	34	930	0	0.0344478	0	T|1.000;|0.000	.	weak	SLC35E2,NS,carcinoma,0,1	SLC35E2	13	1	NM_182838	exon3	c.A387G	p.L129L	CTGATATAAACAG	.	scavenged	Atlas-SNP
ARNTL2	56938	hgsc.bcm.edu	37	12	27553566	27553566	+	Missense_Mutation	SNP	A	A	G	rs1037921	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	65	109	0	0.511811	0	A|0.963;G|0.037	0.037	strong	.	ARNTL2	54	.	NM_020183	exon10	c.A1019G	p.N340S	AAGACAACAGTAA	.	PASS	Atlas-SNP
C4orf40	401137	hgsc.bcm.edu	37	4	71024463	71024463	+	Missense_Mutation	SNP	G	G	C	rs142405912	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	9	135	0	0.0841122	0	G|0.993;C|0.007	0.007	strong	.	C4orf40	19	.	NM_214711	exon3	c.G494C	p.G165A	CTGTTGGAGCTGA	.	PASS	Atlas-SNP
LEFTY1	10637	hgsc.bcm.edu	37	1	226076669	226076669	+	Missense_Mutation	SNP	C	C	T	rs41310561	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	29	53	0	0.483333	0	C|0.955;T|0.045	0.045	strong	LEFTY1,NS,carcinoma,0,1	LEFTY1	30	1	NM_020997	exon1	c.G98A	p.R33Q	AGCTGCCGCAGCA	.	PASS	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	37	10	88635779	88635779	+	Missense_Mutation	SNP	C	C	A	rs3182217	bycluster;bysubmitter;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	205	236	0	0.995146	0	.	.	weak	.	BMPR1A	118	.	NM_004329	exon3	c.C4A	p.P2T	ACAATGCCTCAGC	.	PASS	Atlas-SNP
COPS2	9318	hgsc.bcm.edu	37	15	49429410	49429410	+	Silent	SNP	A	A	G	rs17473148	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	11	43	0	0.52381	0	A|0.868;G|0.132	0.132	strong	.	COPS2	41	.	NM_001143887	exon6	c.T498C	p.Y166Y	TTCTAAATATAAT	.	PASS	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	37	5	168114030	168114030	+	Missense_Mutation	SNP	C	C	T	rs148887706	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	326	165	308	0	0.506135	0	C|1.000;T|0.000	0.000	strong	.	SLIT3	224	.	NM_001271946	exon30	c.G3289A	p.V1097M	TGTCCACGCACTG	.	PASS	Atlas-SNP
PHLDB3	653583	hgsc.bcm.edu	37	19	43990438	43990438	+	Missense_Mutation	SNP	G	G	A	rs201337364	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	15	38	0	0.5	0	.	.	weak	.	PHLDB3	30	.	NM_198850	exon13	c.C1465T	p.P489S	CAGCAGGGCCTGA	.	PASS	Atlas-SNP
SNX29	92017	hgsc.bcm.edu	37	16	12145791	12145791	+	Missense_Mutation	SNP	G	G	C	rs118191509	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	499	217	504	0	0.43487	0	G|0.983;C|0.017	0.017	strong	.	SNX29	60	.	NM_032167	exon8	c.G836C	p.G279A	ACTCTGGGGACGT	.	PASS	Atlas-SNP
CCDC38	120935	hgsc.bcm.edu	37	12	96292170	96292170	+	Missense_Mutation	SNP	C	C	G	rs75959092	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	445	183	402	0	0.411236	0	C|0.917;G|0.083	0.083	strong	.	CCDC38	45	.	NM_182496	exon7	c.G607C	p.V203L	TTTTCACTGCTTG	.	PASS	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	37	2	85570857	85570857	+	Missense_Mutation	SNP	G	G	A	rs4832169	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	308	43	239	0	0.13961	0	G|0.786;A|0.214	0.214	strong	.	RETSAT	56	.	NM_017750	exon10	c.C1598T	p.A533V	TAGCAGGCACCTC	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104117191	104117191	+	Silent	SNP	A	A	G	rs2290943	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	32	56	0	0.5	0	A|0.848;G|0.152	0.152	strong	CENPE,NS,carcinoma,0,1	CENPE	253	1	NM_001813	exon4	c.T243C	p.T81T	AAATATAGTACCT	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	37	22	26388337	26388337	+	Silent	SNP	C	C	T	rs916425	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	18	63	0	0.295082	0	C|0.866;T|0.134	0.134	strong	.	MYO18B	322	.	NM_032608	exon40	c.C6165T	p.Y2055Y	GAAGTACGTGGAG	.	PASS	Atlas-SNP
NMT1	4836	hgsc.bcm.edu	37	17	43171154	43171154	+	Silent	SNP	C	C	T	rs1132898	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	49	116	0	0.485149	0	C|0.785;G|0.000;T|0.215	0.215	strong	.	NMT1	31	.	NM_021079	exon4	c.C487T	p.L163L	TTGGACCTGGGCG	.	PASS	Atlas-SNP
KLKB1	3818	hgsc.bcm.edu	37	4	187178473	187178473	+	Missense_Mutation	SNP	G	G	A	rs4253325	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	59	157	0	0.472	0	G|0.817;A|0.183	0.183	strong	.	KLKB1	155	.	NM_000892	exon14	c.G1679A	p.R560Q	CCCAACGGATGGT	.	PASS	Atlas-SNP
SIRT5	23408	hgsc.bcm.edu	37	6	13599303	13599303	+	Silent	SNP	C	C	T	rs3757261	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	44	88	0	0.444444	0	C|0.829;T|0.171	0.171	strong	SIRT5_ENST00000379262,caecum,carcinoma,0,2	SIRT5	45	2	NM_012241	exon8	c.C657T	p.H219H	ACCTCACGTCGTG	.	PASS	Atlas-SNP
TMEM171	134285	hgsc.bcm.edu	37	5	72419267	72419267	+	Missense_Mutation	SNP	T	T	C	rs638333	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	370	165	341	0	0.445946	0	T|0.791;C|0.209	0.209	strong	.	TMEM171	41	.	NM_173490	exon2	c.T67C	p.F23L	CTCATCTTCTGCT	.	PASS	Atlas-SNP
RNF145	153830	hgsc.bcm.edu	37	5	158603839	158603839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	4	225	0	0.0137457	0	.	.	none	RNF145,NS,carcinoma,0,4	RNF145	110	4	NM_001199380	exon5	c.T512C	p.M171T	GTTTTCATGACAC	.	scavenged	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	37	17	73886888	73886888	+	Missense_Mutation	SNP	A	A	G	rs3760128	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	32	84	0	0.426667	0	A|0.500;G|0.500	0.500	strong	TRIM65,NS,carcinoma,0,1	TRIM65	23	1	NM_173547	exon6	c.T1526C	p.L509P	GGCCCCAGAGGGA	.	PASS	Atlas-SNP
STYK1	55359	hgsc.bcm.edu	37	12	10782116	10782116	+	Silent	SNP	G	G	A	rs4763567	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	53	84	0	0.495327	0	G|0.963;A|0.037	0.037	strong	.	STYK1	55	.	NM_018423	exon6	c.C609T	p.L203L	AAAGCTGAGCAGG	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79320431	79320431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	2	142	0	0.0114286	0	.	.	none	PRUNE2_ENST00000376718,NS,carcinoma,-2,1	PRUNE2	331	1	NM_015225	exon8	c.C6759A	p.D2253E	AAAGCTGTCTGAT	.	scavenged	Atlas-SNP
IL17RE	132014	hgsc.bcm.edu	37	3	9956279	9956279	+	Missense_Mutation	SNP	G	G	A	rs455863	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	109	115	1	0.990909	0.00869565	A|0.424;C|0.006	0.424	strong	IL17RE,NS,haematopoietic_neoplasm,+1,1	IL17RE	62	1	NM_001193380	exon14	c.G1417A	p.G473R	GTGTCCGGATGGT	.	PASS	Atlas-SNP
AFAP1	60312	hgsc.bcm.edu	37	4	7857230	7857230	+	Silent	SNP	C	C	T	rs61742221	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	47	101	0	0.423423	0	C|0.700;T|0.300	0.300	strong	.	AFAP1	93	.	NM_001134647	exon4	c.G297A	p.P99P	GCTCAGCGGCACA	.	PASS	Atlas-SNP
POMT1	10585	hgsc.bcm.edu	37	9	134385435	134385435	+	Nonsense_Mutation	SNP	C	C	T	rs3887873	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	43	88	0	0.462366	0	C|0.904;T|0.096	0.096	strong	.	POMT1	59	.	NM_007171	exon8	c.C751T	p.Q251X	CAGATGCAGATGT	.	PASS	Atlas-SNP
FARSA	2193	hgsc.bcm.edu	37	19	13041442	13041442	+	Missense_Mutation	SNP	G	G	A	rs33925420	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	21	52	0	0.446809	0	G|0.986;A|0.014	0.014	strong	.	FARSA	46	.	NM_004461	exon2	c.C269T	p.A90V	CTCTGGGCCAGGC	.	PASS	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	37	7	2646796	2646796	+	Missense_Mutation	SNP	G	G	A	rs61729413	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	57	114	0	0.548077	0	G|0.869;A|0.131	0.131	strong	.	IQCE	66	.	NM_152558	exon21	c.G1904A	p.R635K	CTACCAGGAGGAG	.	PASS	Atlas-SNP
CCDC91	55297	hgsc.bcm.edu	37	12	28412372	28412372	+	Missense_Mutation	SNP	G	G	A	rs11049488	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	35	109	0	0.411765	0	G|0.816;A|0.184	0.184	strong	.	CCDC91	63	.	NM_018318	exon2	c.G106A	p.A36T	TTTCCTGCAGGTA	.	PASS	Atlas-SNP
HSPB2	3316	hgsc.bcm.edu	37	11	111784229	111784229	+	Silent	SNP	C	C	T	rs4252588	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	33	70	0	0.6	0	C|0.914;T|0.086	0.086	strong	.	HSPB2	20	.	NM_001541	exon2	c.C159T	p.A53A	TCGGGCCGCCCCA	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44108906	44108906	+	Missense_Mutation	SNP	A	A	G	rs34579536	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	92	106	0	1	0	A|0.860;G|0.140	0.140	strong	KIAA1267,colon,carcinoma,0,1	.	.	1	NM_001193466	exon15	c.T3254C	p.I1085T	GGGACAATGGGAG	.	PASS	Atlas-SNP
SAE1	10055	hgsc.bcm.edu	37	19	47700611	47700611	+	Silent	SNP	C	C	T	rs11083864	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	79	128	0	0.503185	0	C|0.988;T|0.012	0.012	strong	.	SAE1	50	.	NM_005500	exon7	c.C855T	p.D285D	TCCTGACCTGCTT	.	PASS	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	37	19	38652993	38652993	+	Silent	SNP	C	C	T	rs332864	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	91	186	0	0.443902	0	C|0.679;T|0.321	0.321	strong	SIPA1L3,NS,adenoma,0,1	SIPA1L3	150	1	NM_015073	exon14	c.C3762T	p.S1254S	AGATTCCCCCAAC	.	PASS	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	37	19	55697889	55697889	+	Silent	SNP	G	G	A	rs1136578	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	47	62	0	0.580247	0	G|0.891;A|0.109	0.109	strong	.	PTPRH	139	.	NM_002842	exon15	c.C2586T	p.P862P	CTTCAGGGGCACC	.	PASS	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	37	6	117114223	117114223	+	Silent	SNP	T	T	A	rs6924002	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	84	155	0	0.515337	0	T|0.683;A|0.317	0.317	strong	.	GPRC6A	152	.	NM_148963	exon6	c.A1863T	p.T621T	AACAGGTGTGTTC	.	PASS	Atlas-SNP
FABP6	2172	hgsc.bcm.edu	37	5	159659262	159659262	+	Missense_Mutation	SNP	G	G	A	rs116237330	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	78	112	0	0.573529	0	G|0.976;A|0.024	0.024	strong	.	FABP6	37	.	NM_001130958	exon5	c.G372A	p.M124I	GACAATGGGGGGC	.	PASS	Atlas-SNP
MMP7	4316	hgsc.bcm.edu	37	11	102398593	102398593	+	Missense_Mutation	SNP	C	C	T	rs10502001	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	80	134	0	0.487805	0	C|0.837;N|0.000	.	strong	.	MMP7	27	.	NM_002423	exon2	c.G230A	p.R77H	ATGACGCGGGAGT	.	PASS	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	37	22	38164106	38164106	+	Silent	SNP	C	C	T	rs4821708	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	59	127	0	0.460938	0	C|0.739;T|0.261	0.261	strong	TRIOBP_ENST00000344404,NS,carcinoma,0,1	TRIOBP	262	1	NM_001039141	exon19	c.C6498T	p.Y2166Y	GGCCTACCAGGAA	.	PASS	Atlas-SNP
UHRF1BP1	54887	hgsc.bcm.edu	37	6	34826921	34826921	+	Missense_Mutation	SNP	G	G	C	rs61732793	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	43	80	0	0.467391	0	G|0.962;C|0.038	0.038	strong	.	UHRF1BP1	102	.	NM_017754	exon14	c.G2788C	p.E930Q	AGCCCTGAGAAGG	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29911227	29911227	+	Nonsense_Mutation	SNP	G	G	T	rs1059537	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	94	192	0	0.427273	0	C|0.002;G|0.992;T|0.006	0.006	strong	.	HLA-A	89	.	NM_001242758	exon3	c.G526T	p.E176X	GCCCATGAGGCGG	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3750615	3750615	+	Missense_Mutation	SNP	T	T	C	rs1046268	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	65	131	0	0.460993	0	T|0.505;C|0.495	0.495	strong	.	TJP3	79	.	NM_001267561	exon21	c.T2720C	p.M907T	AGTTTATGCGAGT	.	PASS	Atlas-SNP
NIF3L1	60491	hgsc.bcm.edu	37	2	201768238	201768238	+	Missense_Mutation	SNP	C	C	T	rs7917	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	97	212	0	0.433036	0	C|0.715;T|0.285	0.285	strong	.	NIF3L1	51	.	NM_001136039	exon7	c.C971T	p.T324I	ATGATACTTTGGA	.	PASS	Atlas-SNP
TPGS2	25941	hgsc.bcm.edu	37	18	34398914	34398914	+	Silent	SNP	C	C	T	rs1045781	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	65	126	0	0.496183	0	C|0.830;T|0.170	0.170	strong	.	.	.	.	NM_001271954	exon2	c.G108A	p.E36E	GGTCACCTCAGTC	.	PASS	Atlas-SNP
ZNF273	10793	hgsc.bcm.edu	37	7	64389089	64389089	+	Missense_Mutation	SNP	A	A	C	rs2017252	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	14	17	0	0.518519	0	A|0.544;C|0.456	0.456	strong	.	ZNF273	45	.	NM_021148	exon4	c.A1383C	p.E461D	ATGTGAAGAATGT	.	PASS	Atlas-SNP
CAMK2B	816	hgsc.bcm.edu	37	7	44282868	44282868	+	Silent	SNP	A	A	G	rs11542228	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	51	123	0	0.366906	0	G|0.378;N|0.001	0.378	strong	.	CAMK2B	56	.	NM_172081	exon8	c.T582C	p.P194P	GTCCACAGGCTTG	.	PASS	Atlas-SNP
ZKSCAN2	342357	hgsc.bcm.edu	37	16	25268368	25268368	+	Silent	SNP	A	A	G	rs4787310	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	52	84	0	0.509804	0	A|0.562;G|0.438	0.438	strong	ZKSCAN2,NS,carcinoma,0,1	ZKSCAN2	90	1	NM_001012981	exon1	c.T81C	p.P27P	CCACTCAGGGTCC	.	PASS	Atlas-SNP
TPSG1	25823	hgsc.bcm.edu	37	16	1272684	1272684	+	Missense_Mutation	SNP	C	C	G	rs4984638	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	65	141	0	0.488722	0	C|0.853;G|0.147	0.147	strong	.	TPSG1	19	.	NM_012467	exon4	c.G479C	p.W160S	GTCACCCAGCACC	.	PASS	Atlas-SNP
BBS12	166379	hgsc.bcm.edu	37	4	123664919	123664919	+	Silent	SNP	A	A	G	rs13102440	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	35	60	0	0.5	0	A|0.856;G|0.144	0.144	strong	.	BBS12	63	.	NM_001178007	exon3	c.A1872G	p.Q624Q	TCTGCAAAATGCC	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	37	7	20687604	20687604	+	Missense_Mutation	SNP	A	A	G	rs61732039	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	43	101	0	0.373913	0	A|0.924;G|0.076	0.076	strong	.	ABCB5	357	.	NM_001163941	exon11	c.A1109G	p.D370G	GTATAGATAACTT	.	PASS	Atlas-SNP
MAGEB2	4113	hgsc.bcm.edu	37	X	30236913	30236913	+	Silent	SNP	G	G	A	rs5973792	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	60	54	0	1	0	G|0.782;A|0.218	0.218	strong	.	MAGEB2	133	.	NM_002364	exon2	c.G216A	p.A72A	TGCTGCGGCTGCG	.	PASS	Atlas-SNP
ANGPTL4	51129	hgsc.bcm.edu	37	19	8436164	8436164	+	Missense_Mutation	SNP	C	C	T	rs1044250	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	37	56	0	0.513889	0	C|0.730;T|0.270	0.270	strong	.	ANGPTL4	21	.	NM_139314	exon6	c.C797T	p.T266M	GCATCACGGGGGA	.	PASS	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	37	5	137754695	137754695	+	Silent	SNP	T	T	C	rs7726234	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	115	196	0	0.502183	0	T|0.382;C|0.618	0.618	strong	KDM3B,NS,carcinoma,0,1	KDM3B	177	1	NM_016604	exon14	c.T3489C	p.G1163G	CTCTGGTGGAGGA	.	PASS	Atlas-SNP
OTUD6B	51633	hgsc.bcm.edu	37	8	92097062	92097062	+	Missense_Mutation	SNP	G	G	A	rs3210518	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	67	133	0	0.544715	0	G|0.954;A|0.046	0.046	strong	.	OTUD6B	28	.	NM_016023	exon7	c.G938A	p.R313Q	TTACACGGTTGGT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214814733	214814733	+	Missense_Mutation	SNP	T	T	G	rs3795519	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	62	164	0	0.430556	0	T|0.916;G|0.084	0.084	strong	.	CENPF	321	.	NM_016343	exon12	c.T3052G	p.Y1018D	GATCAGTACAAGC	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240790	39240790	+	Missense_Mutation	SNP	G	G	A	rs11650261	bycluster;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	9	21	0	0.163636	0	G|0.932;A|0.068	0.068	strong	KRTAP4-9_ENST00000377734,NS,carcinoma,0,3	KRTAP4-7	49	3	NM_033061	exon1	c.G332A	p.R111H	GCTGCCGCCCCAG	.	scavenged	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33498978	33498978	+	Silent	SNP	A	A	G	rs2163807	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	45	94	0	0.436893	0	A|0.580;G|0.420	0.420	strong	.	RHPN2	107	.	NM_033103	exon7	c.T702C	p.C234C	CCGATCACACCGG	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82815408	82815408	+	Missense_Mutation	SNP	G	G	A	rs2287926	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	99	174	0	0.505102	0	G|0.819;A|0.181	0.181	strong	.	VCAN	498	.	NM_004385	exon7	c.G1283A	p.G428D	CTACTGGCAGTAC	.	PASS	Atlas-SNP
UGDH	7358	hgsc.bcm.edu	37	4	39515736	39515736	+	Silent	SNP	A	A	G	rs10019532	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	83	180	0	0.458564	0	A|0.768;G|0.232	0.232	strong	.	UGDH	52	.	NM_003359	exon3	c.T231C	p.D77D	GATGGCATCATCA	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152325732	152325732	+	Silent	SNP	G	G	A	rs12022217	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	302	148	259	0	0.490066	0	G|0.773;A|0.227	0.227	strong	.	FLG2	431	.	NM_001014342	exon3	c.C4530T	p.H1510H	CCCTGAGTGCACT	.	PASS	Atlas-SNP
FAM90A1	55138	hgsc.bcm.edu	37	12	8377348	8377348	+	Silent	SNP	T	T	C	rs199649765		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	13	12	0	0.317073	0	.	.	weak	FAM90A1,NS,neuroblastoma,0,1	FAM90A1	68	1	NM_018088	exon4	c.A81G	p.P27P	CCCAACTGGGGCC	.	scavenged	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	37	17	10450816	10450816	+	Silent	SNP	T	T	C	rs12600539	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	340	186	310	0	0.547059	0	T|0.540;C|0.460	0.460	strong	MYH2,NS,carcinoma,-2,1	MYH2	390	1	NM_017534	exon4	c.A324G	p.E108E	ATAACGTTCTTTG	.	PASS	Atlas-SNP
TCTN2	79867	hgsc.bcm.edu	37	12	124172643	124172643	+	Silent	SNP	C	C	T	rs144567556	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	43	113	0	0.355372	0	C|0.994;T|0.006	0.006	strong	.	TCTN2	50	.	NM_024809	exon7	c.C810T	p.D270D	TACTGACGCAAAA	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78261730	78261730	+	Silent	SNP	G	G	A	rs17853714	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	44	128	0	0.382609	0	G|0.861;A|0.139	0.139	strong	.	RNF213	766	.	NM_001256071	exon4	c.G378A	p.P126P	AAACCCGTGGCCT	.	PASS	Atlas-SNP
HOMEZ	57594	hgsc.bcm.edu	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	7	107	0	0.0598291	0	.	.	none	.	HOMEZ	80	.	NM_020834	exon2	c.G1593A	p.E531E	CTCCTCCTCTTCC	.	PASS	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	37	20	15967390	15967390	+	Missense_Mutation	SNP	C	C	T	rs41275442	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	75	165	0	0.46875	0	C|0.869;T|0.131	0.131	strong	.	MACROD2	34	.	NM_080676	exon14	c.C1004T	p.T335M	ATTCAACGAAGAA	.	PASS	Atlas-SNP
OAS3	4940	hgsc.bcm.edu	37	12	113405328	113405328	+	Missense_Mutation	SNP	G	G	A	rs61732395	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	68	122	0	0.49635	0	G|0.993;A|0.007	0.007	strong	.	OAS3	63	.	NM_006187	exon13	c.G2795A	p.R932Q	TACAACGGGACTT	.	PASS	Atlas-SNP
NMRK1	54981	hgsc.bcm.edu	37	9	77684690	77684690	+	Silent	SNP	A	A	C	rs3752955	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	66	107	0	0.515625	0	A|0.396;C|0.604	0.604	strong	.	.	.	.	NM_017881	exon6	c.T357G	p.T119T	TGGAATAGTCAGG	.	PASS	Atlas-SNP
FAM205A	259308	hgsc.bcm.edu	37	9	34724987	34724987	+	Silent	SNP	A	A	G	rs201739024	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	337	46	261	0	0.136499	0	A|0.870;G|0.130	0.130	strong	FAM205A_ENST00000378788,colon,carcinoma,-1,2	FAM205A	45	2	NM_001141917	exon4	c.T2250C	p.A750A	TGGTAAAGCCTGT	.	scavenged	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	37	22	46760481	46760481	+	Missense_Mutation	SNP	C	C	G	rs9615351	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	45	100	1	0.517241	0.01	C|0.700;G|0.300	0.300	strong	CELSR1,NS,carcinoma,0,1	CELSR1	242	1	NM_014246	exon33	c.G8707C	p.E2903Q	GGTACTCTCCACG	.	scavenged	Atlas-SNP
FUT10	84750	hgsc.bcm.edu	37	8	33246591	33246591	+	Missense_Mutation	SNP	G	G	C	rs17855838	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	407	190	391	0	0.46683	0	G|0.815;C|0.185	0.185	strong	FUT10,NS,carcinoma,0,1	FUT10	62	1	NM_032664	exon4	c.C1102G	p.L368V	CCCTGAGAGCTGT	.	PASS	Atlas-SNP
CES5A	221223	hgsc.bcm.edu	37	16	55905676	55905676	+	Splice_Site	SNP	C	C	T	rs72810507	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	21	45	0	0.42	0	C|0.922;T|0.078	0.078	strong	.	CES5A	206	.	NM_001143685	exon4	c.279-1G>A	.	AGGCACCTTGGAG	.	PASS	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	37	22	26702015	26702015	+	Silent	SNP	A	A	C	rs1210894	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	75	1	1	0.0133333	A|0.555;C|0.445	0.445	strong	SEZ6L,NS,carcinoma,0,1	SEZ6L	174	1	NM_001184777	exon6	c.A1419C	p.T473T	AAACACAAATGGG	.	scavenged	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	37	19	36268771	36268771	+	Silent	SNP	C	C	T	rs231228	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	50	87	1	0.454545	0.0114943	C|0.743;T|0.257	0.257	strong	ARHGAP33,NS,carcinoma,+2,1	ARHGAP33	102	1	NM_052948	exon3	c.C150T	p.A50A	CTGCGCCCATTTC	.	scavenged	Atlas-SNP
KIAA2013	90231	hgsc.bcm.edu	37	1	11983206	11983206	+	Silent	SNP	A	A	G	rs3795408	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	355	162	316	0	0.456338	0	A|0.385;G|0.615	0.615	strong	.	KIAA2013	25	.	NM_138346	exon2	c.T1374C	p.F458F	CCCCCCAAAGCTG	.	PASS	Atlas-SNP
TAT	6898	hgsc.bcm.edu	37	16	71610276	71610276	+	Missense_Mutation	SNP	G	G	A	rs74344827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	71	143	0	0.489655	0	G|0.838;A|0.162	0.162	strong	.	TAT	80	.	NM_000353	exon2	c.C43T	p.P15S	TTGAGGGGAGGTT	.	PASS	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	37	17	5289580	5289580	+	Silent	SNP	A	A	G	rs11209	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	241	106	212	0	0.439834	0	A|0.526;G|0.474	0.474	strong	.	NUP88	47	.	NM_002532	exon17	c.T2172C	p.H724H	CCTTATATGTTCA	.	PASS	Atlas-SNP
ZNF627	199692	hgsc.bcm.edu	37	19	11725413	11725413	+	Silent	SNP	G	G	A	rs12151212	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	47	63	0	0.447619	0	G|0.865;A|0.135	0.135	strong	ZNF627,NS,carcinoma,0,1	ZNF627	43	1	NM_145295	exon2	c.G75A	p.Q25Q	TTCCCAGAAGAAT	.	PASS	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	37	16	28507452	28507452	+	Missense_Mutation	SNP	G	G	T	rs370148393	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	2	21	3	0.105263	0.142857	.	.	alt	APOBR,caecum,carcinoma,0,1	APOBR	89	1	NM_018690	exon2	c.G1090T	p.G364W	GAGGCCGGGACAG	.	scavenged	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	37	17	65199433	65199433	+	Splice_Site	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	5	76	0	0.0574713	0	.	.	none	.	HELZ	160	.	NM_014877	exon7	c.372+2T>C	.	CAACATACCAGGG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1264772	1264772	+	Missense_Mutation	SNP	T	T	C	rs2943500	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	406	30	243	2	0.0738916	0.00823045	.	.	weak	MUC5B,NS,neuroblastoma,0,3	MUC5B	473	3	NM_002458	exon31	c.T6662C	p.I2221T	CGGGCATCTTGGG	.	scavenged	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187540918	187540918	+	Missense_Mutation	SNP	G	G	C	rs3796648	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	38	114	0	0.44186	0	G|0.922;C|0.078	0.078	strong	.	FAT1	500	.	NM_005245	exon10	c.C6822G	p.D2274E	GATGTCGTCTACT	.	PASS	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	37	1	204588140	204588140	+	Silent	SNP	G	G	A	rs3747630	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	56	131	0	0.448	0	G|0.800;A|0.200	0.200	strong	.	LRRN2	81	.	NM_006338	exon3	c.C981T	p.H327H	GCGGGGGTGGATG	.	PASS	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	37	14	101350298	101350298	+	Silent	SNP	T	T	C	rs3825569	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	81	0	1	0	T|0.456;C|0.544	0.544	strong	.	RTL1	120	.	NM_001134888	exon1	c.A828G	p.E276E	AAACACTTCGGAC	.	PASS	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169622490	169622490	+	Silent	SNP	G	G	A	rs9505895	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	133	99	0	1	0	G|0.783;A|0.217	0.217	strong	THBS2,NS,carcinoma,0,1	THBS2	230	1	NM_003247	exon20	c.C3075T	p.A1025A	GAAGCCGGCATAG	.	PASS	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	37	17	18047189	18047189	+	Missense_Mutation	SNP	G	G	A	rs2272571	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	43	86	0	0.483146	0	G|0.745;A|0.255	0.255	strong	.	MYO15A	268	.	NM_016239	exon27	c.G6052A	p.G2018R	GGCCTCGGGCTGG	.	PASS	Atlas-SNP
GPR39	2863	hgsc.bcm.edu	37	2	133174764	133174764	+	Missense_Mutation	SNP	C	C	T	rs2241764	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	75	184	0	0.449102	0	C|0.618;T|0.381	0.381	strong	.	GPR39	60	.	NM_001508	exon1	c.C149T	p.A50V	ACAGCGCCACCAT	.	PASS	Atlas-SNP
FAM126A	84668	hgsc.bcm.edu	37	7	23015831	23015831	+	Silent	SNP	T	T	C	rs3735231	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	19	35	0	0.542857	0	T|0.643;C|0.357	0.357	strong	FAM126A,NS,carcinoma,-1,1	FAM126A	53	1	NM_032581	exon7	c.A624G	p.S208S	TTACCTTGAACAA	.	PASS	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	37	6	138615148	138615148	+	Silent	SNP	G	G	A	rs203145	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	58	140	0	0.491525	0	G|0.898;A|0.102	0.102	strong	.	KIAA1244	236	.	NM_020340	exon20	c.G3387A	p.T1129T	TGCTACGGATAAG	.	PASS	Atlas-SNP
UGT2B28	54490	hgsc.bcm.edu	37	4	70160342	70160342	+	Missense_Mutation	SNP	T	T	C	rs72552704	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	38	84	0	0.342342	0	T|0.865;C|0.135	0.135	strong	.	UGT2B28	101	.	NM_053039	exon6	c.T1405C	p.C469R	GTGATGTGCCACA	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55595116	55595116	+	Missense_Mutation	SNP	G	G	C	rs75822385	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	112	272	0	0.460905	0	A|0.002;C|0.069;G|0.929	0.069	strong	OR5L2,NS,carcinoma,+1,1	OR5L2	135	1	NM_001004739	exon1	c.G422C	p.R141P	AGCTGCGTGTGGA	.	PASS	Atlas-SNP
OR10H3	26532	hgsc.bcm.edu	37	19	15852544	15852544	+	Silent	SNP	C	C	T	rs11670326	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	94	190	0	0.458537	0	C|0.700;T|0.300	0.300	strong	.	OR10H3	53	.	NM_013938	exon1	c.C342T	p.F114F	CTCCTTCCTTCTC	.	PASS	Atlas-SNP
PALM	5064	hgsc.bcm.edu	37	19	731144	731144	+	Missense_Mutation	SNP	A	A	G	rs1050457	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	48	146	0	0.410256	0	A|0.468;G|0.532	0.532	strong	.	PALM	26	.	NM_002579	exon5	c.A319G	p.T107A	CCAGCCACTGCCA	.	PASS	Atlas-SNP
MOK	5891	hgsc.bcm.edu	37	14	102729881	102729881	+	Splice_Site	SNP	A	A	G	rs56377169	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	34	75	0	0.485714	0	A|0.954;G|0.046	0.046	strong	.	.	.	.	NM_014226	exon5	c.283+2T>C	.	CTACGTACCTCGT	.	PASS	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	37	10	82033594	82033594	+	Silent	SNP	G	G	A	rs2993763	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	99	192	0	0.526596	0	G|0.458;A|0.542	0.542	strong	.	MAT1A	52	.	NM_000429	exon9	c.C1131T	p.Y377Y	ATGGCCGTAGCAT	.	PASS	Atlas-SNP
DIS3L	115752	hgsc.bcm.edu	37	15	66612965	66612965	+	Silent	SNP	T	T	C	rs17851970	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	81	129	0	0.473684	0	T|0.806;C|0.194	0.194	strong	.	DIS3L	175	.	NM_001143688	exon9	c.T1221C	p.N407N	TCCAAATGGACAT	.	PASS	Atlas-SNP
HAUS6	54801	hgsc.bcm.edu	37	9	19076673	19076673	+	Silent	SNP	G	G	C	rs13286328	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	108	251	0	0.446281	0	G|0.633;C|0.367	0.367	strong	.	HAUS6	66	.	NM_017645	exon11	c.C1221G	p.P407P	CGAAAGGGGAGAC	.	PASS	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	37	9	139235415	139235415	+	Missense_Mutation	SNP	C	C	T	rs60980157	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	38	54	0	0.550725	0	C|0.803;T|0.197	0.197	strong	.	GPSM1	50	.	NM_015597	exon9	c.C1172T	p.S391L	CAGCCTCAGAGAA	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	37	19	22941191	22941191	+	Missense_Mutation	SNP	T	T	A	rs11667397	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	22	10	19	0	0.454545	0	T|0.834;A|0.166	0.166	strong	.	ZNF99	273	.	NM_001080409	exon4	c.A1520T	p.K507I	CAAGGTTTCTCTT	.	PASS	Atlas-SNP
ACPT	93650	hgsc.bcm.edu	37	19	51297825	51297825	+	Missense_Mutation	SNP	G	G	A	rs55716643	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	34	84	0	0.459459	0	G|0.751;A|0.249	0.249	strong	.	ACPT	43	.	NM_033068	exon9	c.G973A	p.A325T	AATCCCGCCAAAG	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78293189	78293189	+	Missense_Mutation	SNP	A	A	T	rs55996424	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	52	108	0	0.481481	0	A|0.768;T|0.232	0.232	strong	.	RNF213	766	.	NM_020954	exon17	c.A3101T	p.K1034M	CTATGAAGCACCC	.	PASS	Atlas-SNP
ZNF85	7639	hgsc.bcm.edu	37	19	21131728	21131728	+	Silent	SNP	A	A	G	rs12972502	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	57	91	0	0.587629	0	A|0.919;G|0.081	0.081	strong	.	ZNF85	72	.	NM_001256171	exon5	c.A498G	p.Q166Q	TAACCAATGTCTC	.	PASS	Atlas-SNP
CDC25C	995	hgsc.bcm.edu	37	5	137621421	137621421	+	Missense_Mutation	SNP	C	C	T	rs139145068	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	82	155	0	0.577465	0	C|0.997;T|0.003	0.003	strong	CDC25C,NS,carcinoma,0,1	CDC25C	37	1	NM_001790	exon14	c.G1382A	p.R461Q	TGCTCCCGCAGCT	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254133	39254133	+	Missense_Mutation	SNP	G	G	T	rs200462175		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	12	63	0	0.196721	0	.	.	weak	.	KRTAP4-8	57	.	NM_031960	exon1	c.C204A	p.S68R	ACAGCAGCTGGGG	.	PASS	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	37	18	47398549	47398549	+	Silent	SNP	G	G	A	rs3826579	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	77	141	0	0.487342	0	G|0.718;A|0.282	0.282	strong	.	MYO5B	178	.	NM_001080467	exon27	c.C3591T	p.Y1197Y	ACTATTGTAGGCC	.	PASS	Atlas-SNP
IL27RA	9466	hgsc.bcm.edu	37	19	14153293	14153293	+	Missense_Mutation	SNP	T	T	C	rs35026308	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	31	91	0	0.476923	0	T|0.853;C|0.147	0.147	strong	IL27RA,NS,carcinoma,-1,1	IL27RA	56	1	NM_004843	exon5	c.T563C	p.L188P	TACCCCTGACCCC	.	PASS	Atlas-SNP
AGPHD1	123688	hgsc.bcm.edu	37	15	78825917	78825917	+	Missense_Mutation	SNP	A	A	G	rs3885951	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	76	144	0	0.490323	0	A|0.934;G|0.066	0.066	strong	.	AGPHD1	22	.	NM_001013619	exon5	c.A1027G	p.K343E	GGGTGGAAACACT	.	PASS	Atlas-SNP
DPT	1805	hgsc.bcm.edu	37	1	168698173	168698173	+	Silent	SNP	C	C	T	rs1052591	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	307	140	276	1	0.456026	0.00362319	C|0.599;T|0.401	0.401	strong	DPT,NS,carcinoma,-1,2	DPT	29	2	NM_001937	exon1	c.G240A	p.T80T	CTGTGGCGTGGGC	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228481854	228481854	+	Silent	SNP	C	C	T	rs199641194	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	66	147	0	0.5	0	C|0.998;T|0.002	0.002	weak	.	OBSCN	2142	.	NM_001271223	exon47	c.C12420T	p.A4140A	CCCAGCCATGCCT	.	PASS	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	37	17	73888354	73888354	+	Silent	SNP	G	G	A	rs34974290	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	25	48	0	0.568182	0	G|0.787;A|0.213	0.213	strong	.	TRIM65	23	.	NM_001256124	exon3	c.C738T	p.F246F	CTGCAGGAAGGTC	.	PASS	Atlas-SNP
ELMO3	79767	hgsc.bcm.edu	37	16	67235672	67235672	+	Missense_Mutation	SNP	C	C	T	rs33948247	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	42	75	0	0.545455	0	C|0.960;T|0.040	0.040	strong	.	ELMO3	41	.	NM_024712	exon11	c.C1105T	p.R369C	GTCCTACGCCAGG	.	PASS	Atlas-SNP
EML2	24139	hgsc.bcm.edu	37	19	46133251	46133251	+	Silent	SNP	C	C	T	rs7251952	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	52	98	0	0.440678	0	C|0.871;T|0.129	0.129	strong	.	EML2	64	.	NM_001193268	exon10	c.G1167A	p.S389S	CCACACCGAGAGC	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	37	6	168377029	168377029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	29	170	0	0.133641	0	.	.	none	.	.	.	.	NM_001129895	exon1	c.C304T	p.P102S	CAGTGGGGGTCAT	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39464487	39464487	+	Missense_Mutation	SNP	G	G	C	rs2074285	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	109	0	1	0	G|0.614;C|0.386	0.386	strong	.	KRTAP16-1	12	.	NM_001146182	exon1	c.C1019G	p.P340R	ACAGAAGGACAGC	.	PASS	Atlas-SNP
SEC14L6	730005	hgsc.bcm.edu	37	22	30927975	30927975	+	Missense_Mutation	SNP	C	C	T	rs5749118	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	54	69	0	1	0	C|0.135;T|0.865	0.865	strong	.	SEC14L6	6	.	NM_001193336	exon6	c.G434A	p.R145K	TCCACCCTCTTCC	.	PASS	Atlas-SNP
NUDT13	25961	hgsc.bcm.edu	37	10	74890603	74890603	+	Missense_Mutation	SNP	C	C	T	rs141533992	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	45	74	0	0.529412	0	C|0.999;T|0.001	0.001	strong	.	NUDT13	16	.	NM_015901	exon9	c.C1001T	p.S334F	CCATCTCCCACCA	.	PASS	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	37	1	11008695	11008695	+	Silent	SNP	T	T	C	rs17036032	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	35	67	0	0.479452	0	T|0.858;C|0.142	0.142	strong	.	C1orf127	134	.	NM_001170754	exon12	c.A1497G	p.P499P	CAAGACTGGACGT	.	PASS	Atlas-SNP
SP140L	93349	hgsc.bcm.edu	37	2	231256812	231256812	+	Silent	SNP	A	A	G	rs7559665	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	150	149	0	1	0	A|0.801;G|0.199	0.199	strong	.	SP140L	68	.	NM_138402	exon12	c.A975G	p.A325A	CTTGGCAAAGTGT	.	PASS	Atlas-SNP
SUSD5	26032	hgsc.bcm.edu	37	3	33195309	33195309	+	Missense_Mutation	SNP	A	A	G	rs61743461	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	40	75	0	0.487805	0	A|0.820;G|0.180	0.180	strong	.	SUSD5	53	.	NM_015551	exon5	c.T815C	p.L272S	CCAGGCAAGCCTG	.	PASS	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	37	17	1377943	1377943	+	Silent	SNP	A	A	G	rs2286873	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	117	119	1	1	0.00840336	A|0.554;G|0.446	0.446	strong	.	MYO1C	57	.	NM_001080779	exon17	c.T1758C	p.F586F	CCGGTCAAAGCAC	.	PASS	Atlas-SNP
PREPL	9581	hgsc.bcm.edu	37	2	44566479	44566479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	60	109	0	0.5	0	.	.	none	.	PREPL	69	.	NM_001171603	exon7	c.C776A	p.T259K	TCTTTTGTAAGAT	.	PASS	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70924693	70924693	+	Silent	SNP	T	T	C	rs45480894	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	24	141	0	0.282353	0	T|0.945;C|0.055	0.055	strong	ADAM21_ENST00000267499,NS,carcinoma,0,1	ADAM21	181	1	NM_003813	exon2	c.T477C	p.Y159Y	GGTTTATAAGATA	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47851753	47851753	+	Missense_Mutation	SNP	A	A	G	rs2073376	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	41	40	0	0.97619	0	A|0.303;G|0.697	0.697	strong	.	PCNT	283	.	NM_006031	exon38	c.A8375G	p.Q2792R	TGCTGCAGAAGCT	.	PASS	Atlas-SNP
NSL1	25936	hgsc.bcm.edu	37	1	212965095	212965095	+	Missense_Mutation	SNP	G	G	A	rs17856201	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	36	61	0	0.455696	0	G|0.841;A|0.159	0.159	strong	.	NSL1	24	.	NM_015471	exon1	c.C11T	p.S4F	TCAGGAGACCCCG	.	PASS	Atlas-SNP
NDC80	10403	hgsc.bcm.edu	37	18	2616457	2616457	+	Missense_Mutation	SNP	G	G	C	rs9051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	158	193	0	0.981366	0	G|0.806;C|0.194	0.194	strong	.	NDC80	62	.	NM_006101	exon17	c.G1813C	p.A605P	CAGATTGCTAAAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179397561	179397561	+	Missense_Mutation	SNP	C	C	T	rs3829747	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	94	193	0	0.487047	0	C|0.813;T|0.187	0.187	strong	TTN_ENST00000359218,caecum,carcinoma,-1,7	TTN	18412	7	NM_001267550	exon358	c.G103781A	p.R34594H	CGGATGCGCTTGG	.	PASS	Atlas-SNP
OR5AR1	219493	hgsc.bcm.edu	37	11	56431618	56431618	+	Silent	SNP	C	C	T	rs77272836	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	102	180	1	0.488038	0.00555556	C|0.990;T|0.010	0.010	strong	OR5AR1,NS,carcinoma,0,1	OR5AR1	68	1	NM_001004730	exon1	c.C457T	p.L153L	GCTGGTCTAGTGA	.	scavenged	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	37	19	3760027	3760027	+	Missense_Mutation	SNP	G	G	A	rs11556574	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	42	75	0	0.482759	0	G|0.993;A|0.007	0.007	strong	.	APBA3	28	.	NM_004886	exon2	c.C236T	p.A79V	CAGGGGGCTCCAC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036951	33036951	+	Missense_Mutation	SNP	A	A	G	rs2308930	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	53	90	0	0.524752	0	A|0.698;G|0.302	0.302	strong	.	HLA-DPA1	20	.	NM_033554	exon3	c.T473C	p.L158P	GTGACCAGCTCCC	.	PASS	Atlas-SNP
ANKRD33	341405	hgsc.bcm.edu	37	12	52284483	52284483	+	Silent	SNP	A	A	G	rs7303030	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	18	30	0	0.580645	0	A|0.852;G|0.148	0.148	strong	.	ANKRD33	33	.	NM_182608	exon5	c.A753G	p.Q251Q	GCCCCAAGTGGAG	.	PASS	Atlas-SNP
DPCD	25911	hgsc.bcm.edu	37	10	103368654	103368654	+	Missense_Mutation	SNP	T	T	C	rs7006	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	53	73	0	0.588889	0	T|0.720;C|0.280	0.280	strong	.	DPCD	15	.	NM_015448	exon5	c.T467C	p.L156S	ACGCCTTGCTGAG	.	PASS	Atlas-SNP
EFHB	151651	hgsc.bcm.edu	37	3	19975050	19975050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	3	149	0	0.0193548	0	.	.	none	EFHB_ENST00000295824,NS,carcinoma,-1,2	EFHB	186	2	NM_144715	exon1	c.T461C	p.V154A	TCCTCTACCCCTT	.	scavenged	Atlas-SNP
SAP130	79595	hgsc.bcm.edu	37	2	128757995	128757995	+	Silent	SNP	A	A	C	rs17015864	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	100	94	0	0.990099	0	A|0.920;C|0.080	0.080	strong	.	SAP130	169	.	NM_001145928	exon8	c.T981G	p.S327S	TGCTGCAGATGGA	.	PASS	Atlas-SNP
TMEM5	10329	hgsc.bcm.edu	37	12	64173807	64173807	+	Missense_Mutation	SNP	G	G	A	rs61935924	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	19	33	0	0.475	0	G|0.927;A|0.073	0.073	strong	.	TMEM5	35	.	NM_014254	exon1	c.G67A	p.A23T	CTCTACGCTGCCT	.	PASS	Atlas-SNP
OR2B11	127623	hgsc.bcm.edu	37	1	247614386	247614386	+	Missense_Mutation	SNP	T	T	C	rs12070953	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	111	119	0	0.991071	0	T|0.853;C|0.147	0.147	strong	.	OR2B11	102	.	NM_001004492	exon1	c.A899G	p.D300G	TTCATATCTTTAT	.	PASS	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	37	19	10131999	10131999	+	Missense_Mutation	SNP	T	T	C	rs1644731	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	62	144	0	0.469697	0	T|0.467;C|0.533	0.533	strong	.	RDH8	51	.	NM_015725	exon5	c.T665C	p.M222T	TTTCTATGGCTGA	.	PASS	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194353875	194353875	+	Missense_Mutation	SNP	G	G	T	rs1675955	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	52	109	0	0.495238	0	G|0.652;T|0.348	0.348	strong	.	TMEM44	42	.	NM_138399	exon1	c.C70A	p.H24N	CGCGGTGGCGGGC	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55595012	55595012	+	Silent	SNP	A	A	T	rs35645945	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	30	127	0	0.26087	0	A|0.934;T|0.066	0.066	strong	.	OR5L2	135	.	NM_001004739	exon1	c.A318T	p.T106T	TTGCACATGTGGA	.	PASS	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	37	1	94474328	94474328	+	Silent	SNP	T	T	C	rs4147857	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	72	140	0	0.514286	0	T|0.795;C|0.205	0.205	strong	ABCA4,NS,carcinoma,0,1	ABCA4	275	1	NM_000350	exon41	c.A5814G	p.L1938L	TAGCCTTAAGATG	.	PASS	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2268311	2268311	+	Missense_Mutation	SNP	G	G	A	rs2248821	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	44	64	0	1	0	G|0.492;A|0.508	0.508	strong	.	SGSM2	60	.	NM_001098509	exon10	c.G1121A	p.R374Q	TGCCTCGGGGACA	.	PASS	Atlas-SNP
KDR	3791	hgsc.bcm.edu	37	4	55972974	55972974	+	Missense_Mutation	SNP	T	T	A	rs1870377	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	81	170	0	0.426316	0	T|0.781;A|0.219	0.219	strong	KDR,NS,carcinoma,0,1	KDR	307	1	NM_002253	exon11	c.A1416T	p.Q472H	GACAGCTTGGCTA	.	PASS	Atlas-SNP
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629889	32629889	+	Silent	SNP	G	G	A	rs1049087	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	116	70	0	1	0	G|0.576;A|0.424	0.424	strong	HLA-DQB1,colon,carcinoma,-1,1	HLA-DQB1	15	1	NM_002123	exon3	c.C516T	p.A172A	AACGCCGGCTGTC	.	PASS	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	37	X	123540315	123540315	+	Silent	SNP	G	G	T	rs960869	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	51	66	0	1	0	G|0.579;0|0.024	.	strong	.	.	.	.	NM_001163278	exon26	c.C5007A	p.T1669T	TGCATTGGTCAGG	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982229	57982229	+	Missense_Mutation	SNP	A	A	G	rs1966836	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	122	159	0	0.99187	0	G|0.613;N|0.000	0.613	strong	.	OR1S1	139	.	NM_001004458	exon1	c.A13G	p.S5G	ACTTTTAGTTCCT	.	PASS	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	37	13	96293631	96293631	+	Missense_Mutation	SNP	G	G	A	rs9561921	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	139	280	0	0.516729	0	G|0.895;A|0.105	0.105	strong	.	DZIP1	195	.	NM_014934	exon5	c.C515T	p.T172M	TTGAGCGTCTTGA	.	PASS	Atlas-SNP
MCM8	84515	hgsc.bcm.edu	37	20	5948227	5948227	+	Missense_Mutation	SNP	G	G	A	rs16991615	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	50	102	0	0.442478	0	G|0.953;A|0.047	0.047	strong	.	MCM8	125	.	NM_032485	exon9	c.G1021A	p.E341K	AATGCGGAAGAAG	.	PASS	Atlas-SNP
NNT	23530	hgsc.bcm.edu	37	5	43613046	43613046	+	Missense_Mutation	SNP	A	A	G	rs35201656	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	51	86	0	0.554348	0	A|0.964;G|0.036	0.036	strong	NNT,NS,carcinoma,0,1	NNT	92	1	NM_182977	exon3	c.A188G	p.K63R	TCCCCAAAGAGAT	.	PASS	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	37	12	117669914	117669914	+	Silent	SNP	G	G	A	rs3741475	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	75	116	0	0.568182	0	G|0.747;A|0.253	0.253	strong	NOS1,colon,carcinoma,0,1	NOS1	240	1	NM_001204218	exon23	c.C3360T	p.D1120D	GAGCTCGTCTGTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105409959	105409959	+	Silent	SNP	G	G	T	rs10152073	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	198	231	1	0.994975	0.004329	G|0.467;T|0.533	0.533	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C11829A	p.A3943A	CAGCTTGGCTCCT	.	PASS	Atlas-SNP
YY1AP1	55249	hgsc.bcm.edu	37	1	155658085	155658085	+	Silent	SNP	T	T	C	rs2666826	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	20	62	0	0.357143	0	T|0.472;C|0.528	0.528	strong	YY1AP1_ENST00000368339,NS,carcinoma,0,1	YY1AP1	104	1	NM_001198904	exon1	c.A171G	p.E57E	GATCGTTTCCCCT	.	PASS	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21207389	21207389	+	Missense_Mutation	SNP	T	T	C	rs11045699	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	53	128	0	0.417323	0	T|0.893;C|0.107	0.107	strong	.	SLCO1B7	85	.	NM_001009562	exon10	c.T1360C	p.F454L	TAGGTGTTTTATA	.	PASS	Atlas-SNP
STARD3	10948	hgsc.bcm.edu	37	17	37813338	37813338	+	Silent	SNP	T	T	C	rs2941515	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	43	76	0	0.494253	0	T|0.952;C|0.048	0.048	strong	.	STARD3	33	.	NM_006804	exon3	c.T297C	p.F99F	CATCTTTGTGAGT	.	PASS	Atlas-SNP
C7orf26	79034	hgsc.bcm.edu	37	7	6639953	6639953	+	Silent	SNP	G	G	A	rs34300529	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	28	38	0	0.608696	0	G|0.883;A|0.117	0.117	strong	C7orf26,NS,carcinoma,0,1	C7orf26	33	1	NM_024067	exon4	c.G1074A	p.V358V	GCAGGTGGCCATG	.	PASS	Atlas-SNP
OR1Q1	158131	hgsc.bcm.edu	37	9	125377505	125377505	+	Missense_Mutation	SNP	A	A	G	rs1329957	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	262	229	0	1	0	A|0.129;G|0.871	0.871	strong	.	OR1Q1	46	.	NM_012364	exon1	c.A489G	p.I163M	TCTCATAGGCCAA	.	PASS	Atlas-SNP
KLHL40	131377	hgsc.bcm.edu	37	3	42733468	42733468	+	Missense_Mutation	SNP	T	T	C	rs123509	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	148	155	0	1	0	T|0.161;C|0.839	0.839	strong	.	.	.	.	NM_152393	exon6	c.T1849C	p.C617R	GTGCTGTGCCTGA	.	PASS	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	37	12	114374887	114374887	+	Missense_Mutation	SNP	T	T	C	rs2290787	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	68	174	1	0.4	0.00574713	A|0.076;C|0.019;T|0.905	0.019	strong	RBM19,NS,carcinoma,0,1	RBM19	117	1	NM_001146699	exon16	c.A1993G	p.T665A	GGGCTGTGCTGGA	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511686	195511686	+	Silent	SNP	G	G	T	rs201950480	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	370	50	275	1	0.135135	0.00363636	G|0.998;T|0.002	0.002	weak	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C6765A	p.T2255T	AAGAGGGGTGGTG	.	scavenged	Atlas-SNP
TLE3	7090	hgsc.bcm.edu	37	15	70352968	70352968	+	Silent	SNP	C	C	G	rs2228176	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	49	51	0	0.544444	0	G|0.271;C|0.729;N|0.000;A|0.000	0.271	strong	.	TLE3	104	.	NM_001105192	exon9	c.G615C	p.S205S	GCTTTCCGAGGGT	.	PASS	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	37	6	47847401	47847401	+	Silent	SNP	A	A	G	rs2068006	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	68	51	0	1	0	A|0.358;G|0.642	0.642	strong	.	.	.	.	NM_001013732	exon3	c.T1179C	p.A393A	TTGGCCAGCAAAG	.	PASS	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	37	11	8646670	8646670	+	Missense_Mutation	SNP	T	T	G	rs7947230	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	118	1	1	0.00847458	T|0.743;G|0.257	0.257	strong	.	TRIM66	45	.	NM_014818	exon11	c.A1981C	p.N661H	TCAGGTTGCTCAC	.	PASS	Atlas-SNP
DEF8	54849	hgsc.bcm.edu	37	16	90025640	90025640	+	Missense_Mutation	SNP	G	G	C	rs8166	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	28	37	0	0.518519	0	G|0.888;C|0.112	0.112	strong	.	DEF8	28	.	NM_001242822	exon6	c.G591C	p.M197I	TCAGATGTGAGCT	.	PASS	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	37	19	54755922	54755922	+	Missense_Mutation	SNP	C	C	T	rs34889610	bycluster;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	94	191	0	0.492147	0	TG|1.000;|0.000	.	alt	.	LILRB5	176	.	NM_001081442	exon12	c.G1624A	p.A542T	CCCGAGCATCCAT	.	PASS	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	37	11	2439542	2439542	+	Missense_Mutation	SNP	A	A	G	rs3986599	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	100	91	0	0.990099	0	A|0.209;G|0.791	0.791	strong	TRPM5,NS,carcinoma,0,1	TRPM5	86	1	NM_014555	exon6	c.T761C	p.V254A	GAGCCTACCAGGA	.	PASS	Atlas-SNP
SLC4A11	83959	hgsc.bcm.edu	37	20	3218634	3218634	+	Missense_Mutation	SNP	G	G	C	rs3810562	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	53	119	0	0.486239	0	G|0.367;C|0.633	0.633	strong	SLC4A11_ENST00000380059,NS,lymphoid_neoplasm,0,1	SLC4A11	188	1	NM_001174090	exon1	c.C77G	p.P26R	CTCCTCGGATGCC	.	PASS	Atlas-SNP
C12orf56	115749	hgsc.bcm.edu	37	12	64746833	64746833	+	Missense_Mutation	SNP	C	C	T	rs73118352	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	34	73	0	0.465753	0	C|0.854;T|0.146	0.146	strong	.	C12orf56	42	.	NM_001170633	exon2	c.G256A	p.D86N	AATCATCAATCTG	.	PASS	Atlas-SNP
BCL9	607	hgsc.bcm.edu	37	1	147091689	147091689	+	Silent	SNP	G	G	A	rs61751617	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	49	68	1	0.583333	0.0147059	G|0.973;A|0.027	0.027	strong	BCL9_ENST00000234739,NS,carcinoma,+1,1	BCL9	150	1	NM_004326	exon8	c.G1728A	p.P576P	AGGGCCGAATGTC	.	scavenged	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73455201	73455201	+	Silent	SNP	T	T	C	rs3752752	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	50	96	0	0.438596	0	T|0.407;C|0.593	0.593	strong	.	CDH23	365	.	NM_022124	exon21	c.T2316C	p.N772N	CATCAATGACAAC	.	PASS	Atlas-SNP
TEKT1	83659	hgsc.bcm.edu	37	17	6704071	6704071	+	Silent	SNP	G	G	A	rs17804647	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	84	139	0	0.509091	0	G|0.923;A|0.077	0.077	strong	.	TEKT1	49	.	NM_053285	exon7	c.C1044T	p.V348V	CCTTGCGACATTG	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104642524	104642524	+	Silent	SNP	C	C	T	rs78184481	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	62	36	0	0.984127	0	C|0.971;T|0.029	0.029	strong	.	KIF26A	84	.	NM_015656	exon12	c.C3399T	p.F1133F	CCGCTTCAGCCCC	.	PASS	Atlas-SNP
PCK2	5106	hgsc.bcm.edu	37	14	24572908	24572908	+	Missense_Mutation	SNP	G	G	A	rs149521304		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	71	146	0	0.455128	0	G|1.000;A|0.000	0.000	weak	.	PCK2	66	.	NM_004563	exon10	c.G1658A	p.R553Q	ATGCTCGGGTGCT	.	PASS	Atlas-SNP
C15orf27	123591	hgsc.bcm.edu	37	15	76496232	76496232	+	Missense_Mutation	SNP	G	G	A	rs937732	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	45	87	0	0.459184	0	G|0.704;A|0.296	0.296	strong	.	C15orf27	32	.	NM_152335	exon11	c.G1172A	p.R391H	CCTCCCGCAGCTC	.	PASS	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	37	1	99418647	99418647	+	Silent	SNP	G	G	C	rs309087	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	48	107	0	0.372093	0	G|0.786;C|0.214	0.214	strong	.	.	.	.	NM_001037317	exon3	c.C600G	p.V200V	TGCATAGACACTG	.	PASS	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	37	6	43155718	43155718	+	Missense_Mutation	SNP	G	G	A	rs145911635	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	27	51	0	0.482143	0	G|0.995;A|0.005	0.005	strong	.	CUL9	248	.	NM_015089	exon7	c.G1849A	p.E617K	AAGGCCGAGGCCC	.	PASS	Atlas-SNP
HSPH1	10808	hgsc.bcm.edu	37	13	31729729	31729729	+	Silent	SNP	A	A	G	rs1047086	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	67	144	0	0.437909	0	A|0.651;G|0.349	0.349	strong	.	HSPH1	65	.	NM_006644	exon3	c.T228C	p.N76N	GGGGTCATTGAAT	.	PASS	Atlas-SNP
PPIC	5480	hgsc.bcm.edu	37	5	122359640	122359640	+	Missense_Mutation	SNP	T	T	C	rs451195	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	112	246	1	0.480687	0.00406504	A|0.005;C|0.208	0.208	strong	.	PPIC	18	.	NM_000943	exon5	c.A569G	p.N190S	GAGCAGTTGGTGA	.	PASS	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	37	15	81625336	81625336	+	Silent	SNP	G	G	A	rs77430896	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	32	58	0	0.571429	0	G|0.946;A|0.054	0.054	strong	.	TMC3	112	.	NM_001080532	exon22	c.C2727T	p.F909F	TATCTTGAAATGT	.	PASS	Atlas-SNP
CPA6	57094	hgsc.bcm.edu	37	8	68536470	68536470	+	Missense_Mutation	SNP	A	A	G	rs10957393	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	37	66	0	0.493333	0	A|0.750;G|0.249	0.249	strong	CPA6,NS,adenoma,0,1	CPA6	69	1	NM_020361	exon2	c.T133C	p.F45L	GAATAAATCTTAT	.	PASS	Atlas-SNP
L1TD1	54596	hgsc.bcm.edu	37	1	62673287	62673287	+	Missense_Mutation	SNP	A	A	C	rs2457828	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	43	70	0	0.565789	0	A|0.905;C|0.095	0.095	strong	.	L1TD1	114	.	NM_001164835	exon4	c.A987C	p.K329N	AAGAAAATATGGA	.	PASS	Atlas-SNP
ITPKA	3706	hgsc.bcm.edu	37	15	41793728	41793728	+	Missense_Mutation	SNP	A	A	G	rs143540732	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	47	70	0	0.566265	0	A|1.000;G|0.000	0.000	weak	ITPKA,NS,carcinoma,0,1	ITPKA	19	1	NM_002220	exon2	c.A557G	p.Y186C	AGCGCTACGCCTG	.	PASS	Atlas-SNP
FMO4	2329	hgsc.bcm.edu	37	1	171303836	171303836	+	Missense_Mutation	SNP	G	G	A	rs45599742	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	88	144	0	0.582781	0	G|0.996;A|0.004	0.004	strong	.	FMO4	64	.	NM_002022	exon8	c.G1114A	p.G372S	CTTATCGGCCTTA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105420927	105420927	+	Silent	SNP	A	A	G	rs879210	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	80	76	1	1	0.0131579	A|0.677;G|0.323	0.323	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.T861C	p.P287P	GTCCCTAGGTTCG	.	scavenged	Atlas-SNP
NPTXR	23467	hgsc.bcm.edu	37	22	39222652	39222652	+	Silent	SNP	G	G	A	rs5757299	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	66	106	0	0.515625	0	G|0.577;A|0.423	0.423	strong	.	NPTXR	34	.	NM_014293	exon3	c.C951T	p.Y317Y	GAATGCGTAGAGC	.	PASS	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	37	1	179562740	179562740	+	Missense_Mutation	SNP	G	G	C	rs61310274	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	306	304	273	2	0.993464	0.00732601	G|0.693;C|0.307	0.307	strong	TDRD5,NS,neuroblastoma,+1,1	TDRD5	149	1	NM_173533	exon3	c.G378C	p.R126S	AGGAAGGGTTGCC	.	PASS	Atlas-SNP
USP33	23032	hgsc.bcm.edu	37	1	78183670	78183670	+	Silent	SNP	G	G	T	rs41313399	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	75	170	0	0.524476	0	G|0.973;T|0.027	0.027	strong	.	USP33	87	.	NM_015017	exon18	c.C1893A	p.T631T	AACATGGGTACTG	.	PASS	Atlas-SNP
UFL1	23376	hgsc.bcm.edu	37	6	96985311	96985311	+	Silent	SNP	T	T	C	rs55792562	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	76	128	0	0.539007	0	T|0.978;C|0.022	0.022	strong	.	.	.	.	NM_015323	exon9	c.T864C	p.Y288Y	AAGATATAAGACT	.	PASS	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	41048533	41048533	+	Missense_Mutation	SNP	C	C	T	rs13173930	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	85	90	0	1	0	C|0.756;T|0.244	0.244	strong	.	.	.	.	NM_173489	exon16	c.G1577A	p.R526H	GCCCCACGTAACT	.	PASS	Atlas-SNP
TUBG1	7283	hgsc.bcm.edu	37	17	40766546	40766546	+	Silent	SNP	C	C	G	rs80029012	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	111	289	0	0.406593	0	G|1.000;|0.000	1.000	weak	.	TUBG1	25	.	NM_001070	exon10	c.C1029G	p.R343R	GGAACGCAAGTTG	.	PASS	Atlas-SNP
ZXDC	79364	hgsc.bcm.edu	37	3	126191011	126191011	+	Silent	SNP	G	G	A	rs62264721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	20	68	0	0.384615	0	G|0.982;A|0.018	0.018	strong	.	ZXDC	87	.	NM_025112	exon2	c.C1045T	p.L349L	TCCGCAGGTGAAT	.	PASS	Atlas-SNP
RPAIN	84268	hgsc.bcm.edu	37	17	5326089	5326089	+	Silent	SNP	C	C	T	rs1071648	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	112	212	0	0.533333	0	C|0.689;T|0.311	0.311	strong	.	RPAIN	24	.	NM_001160246	exon3	c.C253T	p.L85L	TTCCAGCTGGAGG	.	PASS	Atlas-SNP
MAP6	4135	hgsc.bcm.edu	37	11	75298797	75298797	+	Silent	SNP	A	A	G	rs1231128	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	356	353	341	0	0.991573	0	A|0.685;G|0.315	0.315	strong	.	MAP6	45	.	NM_033063	exon4	c.T1749C	p.D583D	ACCTTCATCCTTG	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790308	4790308	+	Silent	SNP	A	A	G	rs1030725	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	58	117	0	0.456693	0	A|0.710;G|0.290	0.290	strong	.	OR51F1	60	.	NM_001004752	exon1	c.T840C	p.N280N	GTATACATTAGCC	.	PASS	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	37	9	15571630	15571630	+	Missense_Mutation	SNP	T	T	A	rs443563	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	60	146	0	0.441176	0	T|0.908;A|0.092	0.092	strong	.	.	.	.	NM_173550	exon3	c.T50A	p.I17N	TGAAGATTGCCTC	.	PASS	Atlas-SNP
LRFN3	79414	hgsc.bcm.edu	37	19	36430798	36430798	+	Silent	SNP	A	A	G	rs1057265	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	22	11	16	0	0.5	0	A|0.872;G|0.128	0.128	strong	LRFN3,NS,carcinoma,0,1	LRFN3	43	1	NM_024509	exon2	c.A471G	p.T157T	CGAGACACTGGAG	.	PASS	Atlas-SNP
NDST1	3340	hgsc.bcm.edu	37	5	149919778	149919778	+	Silent	SNP	G	G	A	rs61732050	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	52	114	0	0.448276	0	G|0.958;A|0.042	0.042	strong	.	NDST1	79	.	NM_001543	exon8	c.G1701A	p.A567A	GTTGGCGCAGAAG	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117622188	117622188	+	Missense_Mutation	SNP	T	T	G	rs529156	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	34	89	1	0.404762	0.011236	T|0.824;G|0.176	0.176	strong	ROS1_ENST00000368508,NS,carcinoma,0,1	ROS1	728	1	NM_002944	exon42	c.A6682C	p.K2228Q	TGGACTTATAAAT	.	scavenged	Atlas-SNP
RPA1	6117	hgsc.bcm.edu	37	17	1795180	1795180	+	Silent	SNP	T	T	C	rs2230931	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	54	66	0	1	0	T|0.751;C|0.249	0.249	strong	.	RPA1	48	.	NM_002945	exon15	c.T1605C	p.S535S	GGAGTCTGCTGAA	.	PASS	Atlas-SNP
CROT	54677	hgsc.bcm.edu	37	7	87021023	87021023	+	Missense_Mutation	SNP	G	G	C	rs7785206	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	45	107	0	0.483871	0	G|0.924;C|0.076	0.076	strong	.	CROT	81	.	NM_001143935	exon15	c.G1504C	p.V502L	CCTTCTGTCAATG	.	PASS	Atlas-SNP
HS3ST6	64711	hgsc.bcm.edu	37	16	1962047	1962047	+	Silent	SNP	G	G	A	rs1657140	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	14	55	0	0.411765	0	G|0.664;A|0.336	0.336	strong	.	HS3ST6	26	.	NM_001009606	exon2	c.C480T	p.Y160Y	CTGGGCGTAGTCG	.	PASS	Atlas-SNP
DND1	373863	hgsc.bcm.edu	37	5	140050940	140050940	+	Missense_Mutation	SNP	C	C	T	rs77880328	bycluster;byfrequency;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	961	164	490	0	0.170656	0	A|0.029;G|0.971	.	alt	DND1,NS,carcinoma,0,1	DND1	15	1	NM_194249	exon4	c.G1000A	p.E334K	CAGACTCACTGAG	.	scavenged	Atlas-SNP
MOK	5891	hgsc.bcm.edu	37	14	102698131	102698131	+	Silent	SNP	G	G	A	rs7152550	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	48	72	0	0.521739	0	G|0.951;A|0.049	0.049	strong	.	.	.	.	NM_014226	exon10	c.C894T	p.S298S	TCTGTGGCTGCCC	.	PASS	Atlas-SNP
SH3BP1	23616	hgsc.bcm.edu	37	22	38046695	38046695	+	Missense_Mutation	SNP	C	C	A	rs12170939	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	77	134	0	0.534722	0	C|0.871;A|0.129	0.129	strong	.	SH3BP1	41	.	NM_018957	exon16	c.C1561A	p.P521T	CCAGCTCCGGCCC	.	PASS	Atlas-SNP
SLC44A4	80736	hgsc.bcm.edu	37	6	31838713	31838713	+	Silent	SNP	G	G	A	rs494620	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	41	0	1	0	G|0.559;A|0.441	0.441	strong	.	SLC44A4	67	.	NM_025257	exon10	c.C813T	p.Y271Y	GATGCCGTATGCC	.	PASS	Atlas-SNP
C20orf111	51526	hgsc.bcm.edu	37	20	42825929	42825929	+	Silent	SNP	C	C	T	rs8268	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	58	133	0	0.456693	0	C|0.766;T|0.234	0.234	strong	.	C20orf111	28	.	NM_016470	exon4	c.G642A	p.V214V	GGAATACACTTCC	.	PASS	Atlas-SNP
AMICA1	120425	hgsc.bcm.edu	37	11	118068752	118068752	+	Missense_Mutation	SNP	T	T	C	rs2298831	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	259	107	230	0	0.413127	0	T|0.772;C|0.228	0.228	strong	.	AMICA1	49	.	NM_001098526	exon8	c.A966G	p.I322M	TTCTTTTATCTCT	.	PASS	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	37	14	73743458	73743458	+	Missense_Mutation	SNP	C	C	T	rs17781919	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	76	119	0	0.513514	0	C|0.975;T|0.025	0.025	strong	.	NUMB	56	.	NM_001005743	exon13	c.G1784A	p.G595D	AACCTGCCATCAT	.	PASS	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	37	X	2928170	2928170	+	Silent	SNP	C	C	T	rs77183343	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	74	79	0	1	0	C|0.899;T|0.101	0.101	strong	.	ARSH	72	.	NM_001011719	exon2	c.C192T	p.T64T	CCTGACCGGCCGG	.	PASS	Atlas-SNP
NHSL1	57224	hgsc.bcm.edu	37	6	138794490	138794490	+	Missense_Mutation	SNP	G	G	A	rs201780864	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	79	134	0	0.473054	0	G|0.996;A|0.004	0.004	weak	.	NHSL1	99	.	NM_020464	exon3	c.C436T	p.P146S	AGAATGGGCTGGC	.	PASS	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36224161	36224161	+	Silent	SNP	C	C	A	rs112013670	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	46	52	0	0.621622	0	C|0.894;A|0.106	0.106	strong	.	MLL4	229	.	NM_014727	exon28	c.C6711A	p.G2237G	CCCAGGCCCCCTC	.	PASS	Atlas-SNP
C1orf172	126695	hgsc.bcm.edu	37	1	27278521	27278521	+	Silent	SNP	G	G	A	rs3010110	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	94	188	0	0.505376	0	G|0.848;A|0.152	0.152	strong	.	C1orf172	38	.	NM_152365	exon2	c.C351T	p.D117D	AGTGGAGTCCTCA	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72347482	72347482	+	Silent	SNP	T	T	C	rs12327359	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	60	103	1	0.6	0.00970874	T|0.567;C|0.433	0.433	strong	ZNF407,NS,carcinoma,0,1	ZNF407	231	1	NM_001146190	exon1	c.T4507C	p.L1503L	TTATTTTTACATA	.	scavenged	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139272058	139272058	+	Silent	SNP	A	A	G	rs10781507	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	31	45	0	0.424658	0	A|0.635;G|0.365	0.365	strong	SNAPC4,NS,lymphoid_neoplasm,0,1	SNAPC4	82	1	NM_003086	exon21	c.T4221C	p.S1407S	CAGCTCACTCAGG	.	PASS	Atlas-SNP
FIGF	2277	hgsc.bcm.edu	37	X	15381421	15381421	+	Silent	SNP	C	C	T	rs12011065	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	34	48	0	1	0	C|0.881;0|0.003	.	strong	.	FIGF	39	.	NM_004469	exon2	c.G111A	p.L37L	TCGTTCCAATGTG	.	PASS	Atlas-SNP
PYROXD2	84795	hgsc.bcm.edu	37	10	100167396	100167396	+	Silent	SNP	G	G	A	rs12763326	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	27	57	0	0.613636	0	G|0.643;A|0.356	0.356	strong	.	PYROXD2	43	.	NM_032709	exon4	c.C258T	p.R86R	GGACGCGCGGGAG	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150901630	150901630	+	Silent	SNP	G	G	T	rs3734049	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	19	36	0	0.463415	0	G|0.872;T|0.128	0.128	strong	.	FAT2	465	.	NM_001447	exon18	c.C10524A	p.I3508I	GGGAGGGATGCCA	.	PASS	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	37	12	9010671	9010671	+	Silent	SNP	G	G	A	rs11612600	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	50	94	0	0.50505	0	G|0.729;A|0.271	0.271	strong	A2ML1,NS,carcinoma,0,1	A2ML1	199	1	NM_144670	exon26	c.G3237A	p.V1079V	CAACGTGGGAAAT	.	PASS	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	37	9	139327439	139327439	+	Silent	SNP	A	A	G	rs10781542	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	40	60	0	0.506329	0	A|0.597;G|0.403	0.403	strong	.	INPP5E	18	.	NM_019892	exon5	c.T1248C	p.T416T	GAAGGAAGTGCCA	.	PASS	Atlas-SNP
CDK20	23552	hgsc.bcm.edu	37	9	90588970	90588970	+	Missense_Mutation	SNP	C	C	A	rs28364935	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	32	49	0	0.5	0	C|0.916;A|0.084	0.084	strong	.	CDK20	52	.	NM_178432	exon2	c.G95T	p.C32F	GGCAGACACTGCC	.	PASS	Atlas-SNP
RLN3	117579	hgsc.bcm.edu	37	19	14141666	14141666	+	Missense_Mutation	SNP	G	G	T	rs78161395	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	62	120	0	0.469697	0	G|0.865;T|0.135	0.135	strong	.	RLN3	10	.	NM_080864	exon2	c.G335T	p.G112V	CCCCTGGGGTTCT	.	PASS	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279623	1279623	+	Silent	SNP	G	G	A	rs72633259	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	48	127	0	0.40678	0	G|0.650;A|0.350	0.350	strong	.	TPSB2	8	.	NM_024164	exon3	c.C177T	p.C59C	GCCCCCGCAGAAG	.	PASS	Atlas-SNP
MRPS27	23107	hgsc.bcm.edu	37	5	71519664	71519664	+	Missense_Mutation	SNP	C	C	T	rs3209157	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	114	95	0	1	0	T|0.258;G|0.146	0.258	strong	MRPS27,NS,neuroblastoma,-1,1	MRPS27	23	1	NM_015084	exon10	c.G851A	p.G284D	ACTGCACCCAGCA	.	PASS	Atlas-SNP
TYR	7299	hgsc.bcm.edu	37	11	89017961	89017961	+	Missense_Mutation	SNP	G	G	A	rs1126809	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	257	141	208	1	0.548638	0.00480769	G|0.831;A|0.169	0.169	strong	TYR,NS,carcinoma,+1,1	TYR	130	1	NM_000372	exon4	c.G1205A	p.R402Q	GGCTCCGAAGGCA	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29911115	29911115	+	Silent	SNP	G	G	A	rs12721717	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	60	225	0	0.333333	0	A|0.005;C|0.418;G|0.576	0.005	strong	.	HLA-A	89	.	NM_001242758	exon3	c.G414A	p.R138R	GTACCGGCAGGAC	.	PASS	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	37	20	39990700	39990700	+	Silent	SNP	T	T	C	rs41278104	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	47	70	0	0.5	0	T|0.802;C|0.198	0.198	strong	.	EMILIN3	63	.	NM_052846	exon4	c.A1509G	p.V503V	TGTCTGTACAAGG	.	PASS	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	37	3	167023624	167023624	+	Missense_Mutation	SNP	A	A	G	rs35190925	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	68	157	0	0.492754	0	A|0.918;G|0.082	0.082	strong	.	ZBBX	299	.	NM_024687	exon17	c.T1532C	p.I511T	AAACCTATATTTT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152278555	152278555	+	Missense_Mutation	SNP	T	T	C	rs80221306	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1020	194	777	0	0.190196	0	T|0.972;C|0.028	0.028	strong	FLG,NS,haematopoietic_neoplasm,0,2	FLG	900	2	NM_002016	exon3	c.A8807G	p.D2936G	GCTCTGTCTTCTT	.	scavenged	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144941181	144941181	+	Missense_Mutation	SNP	G	G	C	rs7839934	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	63	90	0	0.508065	0	G|0.737;C|0.263	0.263	strong	.	EPPK1	199	.	NM_031308	exon1	c.C6241G	p.L2081V	ACAGCAGCCAGCC	.	PASS	Atlas-SNP
BCL6	604	hgsc.bcm.edu	37	3	187447032	187447032	+	Silent	SNP	G	G	A	rs1056932	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	177	168	0	0.977901	0	G|0.471;A|0.529	0.529	strong	.	BCL6	107	.	NM_001134738	exon4	c.C1161T	p.N387N	ATTCTGGTTGAGG	.	PASS	Atlas-SNP
EML1	2009	hgsc.bcm.edu	37	14	100375707	100375707	+	Missense_Mutation	SNP	C	C	T	rs34198557	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	101	215	1	0.492683	0.00465116	C|0.813;T|0.187	0.187	strong	EML1,colon,carcinoma,0,2	EML1	97	2	NM_001008707	exon12	c.C1187T	p.A396V	TTGCTGCGGATTT	.	PASS	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	37	17	56690848	56690848	+	Silent	SNP	T	T	C	rs8077548	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	67	143	0	0.515385	0	T|0.835;C|0.165	0.165	strong	TEX14_ENST00000240361,NS,carcinoma,0,2	TEX14	343	2	NM_001201457	exon9	c.A957G	p.L319L	TTTCTCTAGGTCC	.	PASS	Atlas-SNP
TRIM38	10475	hgsc.bcm.edu	37	6	25966909	25966909	+	Missense_Mutation	SNP	G	G	T	rs41266771	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	33	71	0	0.423077	0	G|0.995;T|0.005	0.005	strong	.	TRIM38	50	.	NM_006355	exon3	c.G159T	p.R53S	ACTGAGGCAGGAG	.	PASS	Atlas-SNP
BPIFB2	80341	hgsc.bcm.edu	37	20	31609581	31609581	+	Silent	SNP	C	C	T	rs17124003	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	74	146	0	0.451219	0	C|0.672;N|0.000	.	strong	BPIL1,NS,carcinoma,0,1	.	.	1	NM_025227	exon15	c.C1311T	p.V437V	CTATGTCGCCCCT	.	PASS	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	37	4	162307060	162307060	+	Silent	SNP	G	G	T	rs17040984	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	141	209	0	0.536122	0	G|0.805;T|0.195	0.195	strong	FSTL5,NS,carcinoma,+2,1	FSTL5	207	1	NM_020116	exon16	c.C2383A	p.R795R	TTTTCCGGTTCCA	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1269029	1269029	+	Silent	SNP	T	T	C	rs2738893	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	210	220	0	1	0	T|0.277;C|0.723	0.723	strong	.	CACNA1H	317	.	NM_021098	exon34	c.T5947C	p.L1983L	ATCCCATTGGCTG	.	PASS	Atlas-SNP
TRIM56	81844	hgsc.bcm.edu	37	7	100732852	100732852	+	Silent	SNP	G	G	A	rs78537898	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	120	107	0	0.991736	0	G|0.988;A|0.012	0.012	strong	.	TRIM56	123	.	NM_030961	exon3	c.G2259A	p.P753P	TTCTCCGGACAGT	.	PASS	Atlas-SNP
C20orf111	51526	hgsc.bcm.edu	37	20	42826350	42826350	+	Missense_Mutation	SNP	A	A	C	rs9346	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	25	40	0	0.520833	0	T|0.004;G|0.002	.	strong	.	C20orf111	28	.	NM_016470	exon4	c.T221G	p.V74G	GTTCTCACTGCTC	.	PASS	Atlas-SNP
PASD1	139135	hgsc.bcm.edu	37	X	150840916	150840916	+	Silent	SNP	C	C	T	rs41299110	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	161	150	0	0.96988	0	C|0.803;T|0.197	0.197	strong	.	PASD1	286	.	NM_173493	exon14	c.C1699T	p.L567L	CAGCAGCTGCAAG	.	PASS	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	37	1	11188142	11188142	+	Silent	SNP	C	C	T	rs192740864	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	48	108	0	0.489796	0	C|1.000;T|0.000	0.000	strong	.	MTOR	327	.	NM_004958	exon43	c.G5952A	p.T1984T	GGCTGTCGTGGTA	.	PASS	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	37	7	150163837	150163837	+	Silent	SNP	A	A	G	rs2140595	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	29	56	0	0.54717	0	A|0.649;G|0.351	0.351	strong	GIMAP8,trunk,malignant_melanoma,+1,1	GIMAP8	136	1	NM_175571	exon2	c.A51G	p.G17G	CCTGGGAAAATGC	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306986	1306986	+	Missense_Mutation	SNP	C	C	T	rs72775467	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	478	147	282	1	0.307531	0.0035461	C|0.646;T|0.354	0.354	strong	TPSD1,NS,NS,0,1	TPSD1	47	1	NM_012217	exon3	c.C443T	p.T148M	CGGTCACGCTGCC	.	scavenged	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152432311	152432311	+	Silent	SNP	T	T	C	rs33988153	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	40	97	0	0.416667	0	T|0.853;C|0.147	0.147	strong	.	NEB	1697	.	NM_001271208	exon107	c.A16911G	p.P5637P	GTACTTTGGCTGT	.	PASS	Atlas-SNP
UNC119B	84747	hgsc.bcm.edu	37	12	121154784	121154784	+	Silent	SNP	C	C	T	rs117990192	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	96	168	0	0.52459	0	C|0.994;T|0.006	0.006	strong	.	UNC119B	21	.	NM_001080533	exon4	c.C582T	p.I194I	CTGCATCCCCAGC	.	PASS	Atlas-SNP
FXYD5	53827	hgsc.bcm.edu	37	19	35648365	35648365	+	Missense_Mutation	SNP	T	T	G	rs1688005	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	34	71	0	0.515152	0	T|0.646;G|0.354	0.354	strong	.	FXYD5	41	.	NM_014164	exon3	c.T103G	p.S35A	GCAGACTCAACTA	.	PASS	Atlas-SNP
EVC	2121	hgsc.bcm.edu	37	4	5750003	5750003	+	Silent	SNP	A	A	G	rs33929747	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	50	107	0	0.442478	0	A|0.728;G|0.272	0.272	strong	.	EVC	90	.	NM_153717	exon8	c.A1068G	p.L356L	AGGGCTATTGTGC	.	PASS	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	37	22	21065652	21065652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	26	375	2	0.440678	0.00533333	.	.	none	PI4KA_ENST00000255882,NS,carcinoma,+1,2	PI4KA	313	2	NM_058004	exon51	c.A5900G	p.K1967R	CCCTTCTTGTCCA	.	scavenged	Atlas-SNP
ASMTL	8623	hgsc.bcm.edu	37	X	1531648	1531648	+	Missense_Mutation	SNP	C	C	T	rs1127297	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	566	258	488	0	0.45583	0	T|0.191;G|0.118	0.191	strong	.	ASMTL	56	.	NM_004192	exon12	c.G1622A	p.R541K	GCGACCCTGCTGA	.	PASS	Atlas-SNP
CFLAR	8837	hgsc.bcm.edu	37	2	202006096	202006096	+	Splice_Site	SNP	G	G	A	rs10190751	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	75	182	0	0.480769	0	G|0.764;A|0.236	0.236	strong	.	CFLAR	37	.	NM_001127184	exon6	c.607-1G>A	.	TCTACAGATGATA	.	PASS	Atlas-SNP
TRIP6	7205	hgsc.bcm.edu	37	7	100466441	100466441	+	Missense_Mutation	SNP	G	G	A	rs2075756	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	56	108	0	0.4375	0	G|0.746;A|0.254	0.254	strong	.	TRIP6	45	.	NM_003302	exon4	c.G688A	p.V230I	GCTGGGGTCTCTG	.	PASS	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	37	19	1357082	1357082	+	Silent	SNP	T	T	C	rs713042	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	169	183	0	0.994118	0	T|0.248;C|0.752	0.752	strong	.	MUM1	54	.	NM_032853	exon3	c.T135C	p.S45S	CCTCTCTCTAGAG	.	PASS	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	37	18	59770033	59770033	+	Silent	SNP	C	C	T	rs12326381	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	36	48	0	0.6	0	C|0.880;T|0.120	0.120	strong	.	PIGN	62	.	NM_176787	exon21	c.G1962A	p.L654L	CTGTAACAGATGT	.	PASS	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	37	15	45444133	45444133	+	Missense_Mutation	SNP	T	T	C	rs16939752	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	93	171	0	0.465	0	C|0.231;N|0.000	0.231	strong	DUOX1,NS,carcinoma,0,1	DUOX1	125	1	NM_017434	exon25	c.T3076C	p.C1026R	CGCAGCTGTCTCC	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24790393	24790393	+	Silent	SNP	A	A	G	rs1112284	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	104	94	0	0.990476	0	A|0.581;C|0.007	.	strong	.	KIAA1217	235	.	NM_019590	exon9	c.A1920G	p.S640S	CACCTCAGCCATC	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44061278	44061278	+	Missense_Mutation	SNP	C	C	T	rs17651549	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	52	38	0	1	0	C|0.867;T|0.133	0.133	strong	.	MAPT	135	.	NM_001123066	exon6	c.C1108T	p.R370W	GTCAGCCGGGTCC	.	PASS	Atlas-SNP
ZFP69B	65243	hgsc.bcm.edu	37	1	40928145	40928145	+	Silent	SNP	G	G	A	rs61740805	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	58	116	0	0.456693	0	G|0.950;A|0.050	0.050	strong	ZNF643_ENST00000411995,NS,carcinoma,+1,4	.	.	4	NM_023070	exon5	c.G489A	p.S163S	TATTTCGTGGGAA	.	PASS	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	37	1	154320942	154320942	+	Silent	SNP	A	A	G	rs2297607	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	31	98	0	0.392405	0	G|0.226;N|0.000	0.226	strong	.	ATP8B2	158	.	NM_020452	exon27	c.A3321G	p.T1107T	CACCACAGTCGTC	.	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	134144113	134144113	+	Silent	SNP	C	C	T	rs2294024	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	51	159	0	0.392308	0	C|0.522;T|0.478	0.478	strong	TG,NS,carcinoma,0,1	TG	416	1	NM_003235	exon46	c.C7920T	p.Y2640Y	AGCCTACGAGGGG	.	PASS	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	37	8	103311153	103311153	+	Silent	SNP	C	C	T	rs61752302	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	76	125	0	0.535211	0	C|0.972;T|0.028	0.028	strong	.	UBR5	285	.	NM_015902	exon25	c.G3249A	p.A1083A	AGCATTCGCCTTT	.	PASS	Atlas-SNP
POM121C	100101267	hgsc.bcm.edu	37	7	75051375	75051375	+	Silent	SNP	T	T	C	rs398016	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	87	245	0	0.488764	0	T|0.701;C|0.299	0.299	strong	POM121C,NS,carcinoma,0,1	POM121C	46	1	NM_001099415	exon13	c.A2160G	p.P720P	AAGGGCTGGCTTG	.	PASS	Atlas-SNP
QPCTL	54814	hgsc.bcm.edu	37	19	46206262	46206262	+	Silent	SNP	G	G	A	rs17850756	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	114	237	1	0.475	0.00421941	G|0.727;A|0.273	0.273	strong	QPCTL,NS,carcinoma,0,1	QPCTL	24	1	NM_017659	exon7	c.G1104A	p.L368L	CAACTTGTGCCGC	.	PASS	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	37	19	1370675	1370675	+	Silent	SNP	C	C	G	rs12608765	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	67	111	0	0.51145	0	C|0.666;G|0.334	0.334	strong	MUM1,NS,carcinoma,0,2	MUM1	54	2	NM_032853	exon12	c.C1587G	p.V529V	GGACGTCTTGGGG	.	PASS	Atlas-SNP
CD1C	911	hgsc.bcm.edu	37	1	158260984	158260984	+	Nonsense_Mutation	SNP	G	G	A	rs201073562		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	3	203	0	0.0133333	0	G|0.999;A|0.001	0.001	weak	CD1C,NS,malignant_melanoma,0,1	CD1C	100	1	NM_001765	exon2	c.G122A	p.W41X	AATCCTGGGCACG	.	scavenged	Atlas-SNP
ADAMTS4	9507	hgsc.bcm.edu	37	1	161161284	161161284	+	Missense_Mutation	SNP	G	G	C	rs41270041	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	57	110	0	0.527778	0	G|0.910;C|0.090	0.090	strong	.	ADAMTS4	171	.	NM_005099	exon9	c.C2158G	p.P720A	GGCCAGGGTTTCC	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139165068	139165068	+	Silent	SNP	C	C	T	rs3763590	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	54	106	0	0.524272	0	C|0.632;T|0.368	0.368	strong	.	FAM135B	423	.	NM_015912	exon13	c.G1650A	p.V550V	GGTCAGCACTGGG	.	PASS	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	37	10	134624504	134624504	+	Silent	SNP	C	C	T	rs2274429	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	89	0	1	0	C|0.701;T|0.299	0.299	strong	.	TTC40	100	.	NM_001200049	exon56	c.G7533A	p.A2511A	GGACCGCGCCAGG	.	PASS	Atlas-SNP
CDA	978	hgsc.bcm.edu	37	1	20915701	20915701	+	Missense_Mutation	SNP	A	A	C	rs2072671	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	82	150	0	0.473988	0	A|0.766;C|0.234	0.234	strong	.	CDA	19	.	NM_001785	exon1	c.A79C	p.K27Q	GCCAAGAAGTCAG	.	PASS	Atlas-SNP
ADIPOQ	9370	hgsc.bcm.edu	37	3	186570892	186570892	+	Silent	SNP	T	T	G	rs2241766	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	147	296	1	0.508651	0.00337838	T|0.885;G|0.115	0.115	strong	ADIPOQ,colon,carcinoma,+2,2	ADIPOQ	35	2	NM_001177800	exon3	c.T45G	p.G15G	GCCCGGTCATGAC	.	PASS	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241831005	241831005	+	Silent	SNP	C	C	T	rs10195453	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	53	81	0	0.552083	0	C|0.497;T|0.503	0.503	strong	.	C2orf54	14	.	NM_001085437	exon2	c.G690A	p.R230R	GAGGATCCTTCTC	.	PASS	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	37	X	140983103	140983103	+	Silent	SNP	C	C	T	rs176025	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	158	125	0	0.993711	0	C|0.685;T|0.315	0.315	strong	.	MAGEC3	228	.	NM_138702	exon5	c.C958T	p.L320L	CTTGCACTGTGGG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105421050	105421050	+	Silent	SNP	T	T	G	rs879209	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	56	77	0	1	0	T|0.673;G|0.327	0.327	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A738C	p.P246P	CACCCTTGGTTTG	.	PASS	Atlas-SNP
GOLIM4	27333	hgsc.bcm.edu	37	3	167747022	167747022	+	Missense_Mutation	SNP	C	C	T	rs61743591	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	36	110	0	0.378947	0	C|0.956;T|0.044	0.044	strong	GOLIM4,NS,carcinoma,-1,1	GOLIM4	71	1	NM_014498	exon11	c.G1502A	p.G501E	TCCTCTCCTTGGA	.	PASS	Atlas-SNP
HPS6	79803	hgsc.bcm.edu	37	10	103825929	103825929	+	Missense_Mutation	SNP	T	T	G	rs36078476	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	43	71	0	0.551282	0	T|0.993;G|0.007	0.007	strong	.	HPS6	38	.	NM_024747	exon1	c.T698G	p.L233R	CACGGCTTGGTCT	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187629896	187629896	+	Silent	SNP	G	G	A	rs11722204	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	50	89	0	0.520833	0	G|0.969;A|0.031	0.031	strong	FAT1,NS,carcinoma,0,2	FAT1	500	2	NM_005245	exon2	c.C1086T	p.A362A	TGGCCCGGCTTTG	.	PASS	Atlas-SNP
SLC6A11	6538	hgsc.bcm.edu	37	3	10885920	10885920	+	Silent	SNP	T	T	C	rs2304725	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	54	132	0	0.453782	0	T|0.655;C|0.345	0.345	strong	SLC6A11,NS,adenoma,0,1	SLC6A11	87	1	NM_014229	exon5	c.T645C	p.S215S	CATCTCTGACGGG	.	PASS	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	37	1	89835209	89835209	+	Missense_Mutation	SNP	G	G	A	rs75966734	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	59	156	0	0.398649	0	G|0.993;A|0.007	0.007	strong	.	GBP6	87	.	NM_198460	exon3	c.G295A	p.E99K	GACACCGAAGGTC	.	PASS	Atlas-SNP
NGFR	4804	hgsc.bcm.edu	37	17	47588000	47588000	+	Silent	SNP	C	C	T	rs11466155	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	67	123	1	0.437909	0.00813008	C|0.763;T|0.237	0.237	strong	NGFR,colon,carcinoma,0,2	NGFR	46	2	NM_002507	exon4	c.C795T	p.G265G	TGTGGGCCTTGTG	.	scavenged	Atlas-SNP
ZNF414	84330	hgsc.bcm.edu	37	19	8577924	8577924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	54	105	0	0.650602	0	.	.	none	.	ZNF414	25	.	NM_032370	exon2	c.G305A	p.R102H	GGTGGGCGTCGTC	.	PASS	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167631599	167631599	+	Missense_Mutation	SNP	G	G	A	rs141103827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	89	154	0	0.577922	0	G|0.997;A|0.003	0.003	strong	.	.	.	.	NM_001122679	exon19	c.G3770A	p.R1257Q	CCTCTCGAAATGT	.	PASS	Atlas-SNP
AQP11	282679	hgsc.bcm.edu	37	11	77301341	77301341	+	Missense_Mutation	SNP	G	G	A	rs2276415	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	48	82	0	0.410256	0	G|0.873;A|0.127	0.127	strong	.	AQP11	14	.	NM_173039	exon1	c.G304A	p.G102S	CCGTGCGGCGTGA	.	PASS	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	37	2	97366088	97366088	+	Silent	SNP	T	T	C	rs61742095	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	22	49	0	0.372881	0	T|0.912;C|0.088	0.088	strong	.	FER1L5	113	.	NM_001113382	exon44	c.T5031C	p.V1677V	TACTGTTCATGGT	.	PASS	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72984041	72984041	+	Missense_Mutation	SNP	C	C	G	rs16937976	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	76	131	0	0.490323	0	C|0.874;G|0.126	0.126	strong	TRPA1,right_upper_lobe,carcinoma,+1,2	TRPA1	256	2	NM_007332	exon2	c.G173C	p.R58T	TCACATCTTTTTA	.	PASS	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	37	3	180359790	180359790	+	Missense_Mutation	SNP	T	T	C	rs200277460	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	95	205	0	0.458937	0	T|0.999;C|0.001	0.001	strong	.	CCDC39	242	.	NM_181426	exon13	c.A1865G	p.E622G	ATGTTTTCCCGTT	.	PASS	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	37	12	130912757	130912757	+	Silent	SNP	C	C	T	rs2277356	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	41	93	0	0.383178	0	C|0.786;T|0.214	0.214	strong	RIMBP2,NS,carcinoma,0,2	RIMBP2	220	2	NM_015347	exon12	c.G2328A	p.R776R	GGGCCGCCTCCTT	.	PASS	Atlas-SNP
RTP4	64108	hgsc.bcm.edu	37	3	187088612	187088612	+	Silent	SNP	C	C	T	rs33927333	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	89	195	0	0.427885	0	C|0.885;T|0.115	0.115	strong	.	RTP4	20	.	NM_022147	exon2	c.C192T	p.S64S	GGCTTCCGCCCAA	.	PASS	Atlas-SNP
ZNF653	115950	hgsc.bcm.edu	37	19	11598224	11598224	+	Missense_Mutation	SNP	C	C	T	rs74552618	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	15	39	0	0.375	0	C|0.991;T|0.009	0.009	strong	.	ZNF653	48	.	NM_138783	exon4	c.G1054A	p.E352K	CCTCCTCGCCCAG	.	PASS	Atlas-SNP
KCNMB1	3779	hgsc.bcm.edu	37	5	169810796	169810796	+	Missense_Mutation	SNP	C	C	T	rs11739136	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	104	86	0	1	0	C|0.910;T|0.090	0.090	strong	.	KCNMB1	38	.	NM_004137	exon3	c.T193A	p.S65T	TCAGCTCCTCCTG	.	PASS	Atlas-SNP
PARPBP	55010	hgsc.bcm.edu	37	12	102547741	102547741	+	Missense_Mutation	SNP	G	G	A	rs114546604	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	27	55	0	0.45	0	G|0.976;A|0.024	0.024	strong	.	PARPBP	40	.	NM_017915	exon4	c.G482A	p.R161H	ACAACCGTGATAA	.	PASS	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178581859	178581859	+	Silent	SNP	G	G	A	rs2278221	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	116	187	0	0.574257	0	G|0.802;A|0.198	0.198	strong	.	ADAMTS2	190	.	NM_021599	exon7	c.C1194T	p.D398D	GAAGCCGTCCTCA	.	PASS	Atlas-SNP
DCAF4	26094	hgsc.bcm.edu	37	14	73425462	73425462	+	Silent	SNP	G	G	A	rs12882409	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	35	48	0	0.479452	0	G|0.844;A|0.156	0.156	strong	.	DCAF4	40	.	NM_015604	exon14	c.G1437A	p.P479P	CGCGCCGGGGCTG	.	PASS	Atlas-SNP
ZNF667	63934	hgsc.bcm.edu	37	19	56953272	56953272	+	Silent	SNP	G	G	A	rs3760850	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	61	117	0	0.5	0	G|0.875;A|0.125	0.125	strong	.	ZNF667	95	.	NM_022103	exon5	c.C1092T	p.D364D	GAACTTGTCACAT	.	PASS	Atlas-SNP
ALG1L2	644974	hgsc.bcm.edu	37	3	129810128	129810128	+	Silent	SNP	G	G	A	rs6804080	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	8	8	5	0	1	0	G|0.794;A|0.206	0.206	strong	.	.	.	.	NM_001136152	exon2	c.G45A	p.P15P	CAAGCCGGCATCT	.	PASS	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	37	2	242407746	242407746	+	Silent	SNP	A	A	G	rs10933559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	40	92	0	0.512821	0	A|0.804;G|0.196	0.196	strong	.	FARP2	92	.	NM_014808	exon18	c.A2085G	p.L695L	CCGCCTATGCGGA	.	PASS	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140994591	140994591	+	Missense_Mutation	SNP	C	C	G	rs176048	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	165	146	1	0.988024	0.00684932	C|0.811;G|0.189	0.189	strong	.	MAGEC1	317	.	NM_005462	exon4	c.C1401G	p.H467Q	AACTCACAGTACT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281479	152281479	+	Missense_Mutation	SNP	G	G	T	rs3126079	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	602	392	376	0	0.651163	0	A|0.000;G|0.622;T|0.378	0.378	strong	.	FLG	900	.	NM_002016	exon3	c.C5883A	p.H1961Q	GTCTTCGTGATGG	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225288534	225288534	+	Missense_Mutation	SNP	A	A	C	rs3105571	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	143	281	0	0.5	0	A|0.893;C|0.107	0.107	strong	.	DNAH14	300	.	NM_001373	exon23	c.A3815C	p.E1272A	TCCTTGAAATTCT	.	PASS	Atlas-SNP
CD3EAP	10849	hgsc.bcm.edu	37	19	45911669	45911669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	30	54	0	0.422535	0	.	.	none	.	CD3EAP	27	.	NM_012099	exon3	c.G443A	p.R148Q	GGCCTCGGTTCTG	.	PASS	Atlas-SNP
DHRS1	115817	hgsc.bcm.edu	37	14	24760764	24760764	+	Missense_Mutation	SNP	G	G	A	rs10134537	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	46	94	0	0.494624	0	G|0.913;A|0.087	0.087	strong	.	DHRS1	21	.	NM_138452	exon7	c.C722T	p.T241I	TCACCTGTTGCCA	.	PASS	Atlas-SNP
WDR43	23160	hgsc.bcm.edu	37	2	29129418	29129418	+	Silent	SNP	A	A	G	rs11688605	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	24	48	0	0.387097	0	A|0.630;G|0.370	0.370	strong	.	WDR43	38	.	NM_015131	exon3	c.A456G	p.E152E	TGTGGAATGGAAC	.	PASS	Atlas-SNP
KDELR3	11015	hgsc.bcm.edu	37	22	38877461	38877461	+	Missense_Mutation	SNP	T	T	G	rs12004	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	103	193	0	0.556757	0	A|0.004;C|0.002	.	strong	.	KDELR3	39	.	NM_016657	exon4	c.T596G	p.V199G	TGTATGTGACCAA	.	PASS	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	37	9	104449098	104449098	+	Missense_Mutation	SNP	C	C	T	rs10989591	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	55	92	0	0.555556	0	C|0.652;T|0.348	0.348	strong	.	GRIN3A	186	.	NM_133445	exon2	c.G1084A	p.V362M	CCTCCACATTCTG	.	PASS	Atlas-SNP
COPE	11316	hgsc.bcm.edu	37	19	19011244	19011244	+	Silent	SNP	T	T	C	rs1127821	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	126	116	0	0.992126	0	T|0.421;G|0.095;C|0.305;A|0.179	0.305	strong	.	COPE	26	.	NM_007263	exon8	c.A750G	p.P250P	CGTCTCTGGGTAG	.	PASS	Atlas-SNP
F12	2161	hgsc.bcm.edu	37	5	176831085	176831085	+	Missense_Mutation	SNP	G	G	A	rs2230939	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	11	5	0	0.733333	0	T|0.005;G|0.993;A|0.001	0.001	strong	.	F12	35	.	NM_000505	exon10	c.C1025T	p.P342L	TTCGCCGGCAAGG	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85978939	85978939	+	Silent	SNP	G	G	A	rs4244947	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	44	105	0	0.54321	0	G|0.460;A|0.540	0.540	strong	.	CDHR1	122	.	NM_001171971	exon17	c.G2145A	p.L715L	GGGTCTGTTCTTG	.	PASS	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	37	19	4200156	4200156	+	Missense_Mutation	SNP	G	G	A	rs2052191	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	53	76	0	0.946429	0	G|0.591;A|0.409	0.409	strong	.	ANKRD24	180	.	NM_133475	exon5	c.G331A	p.A111T	ATGAGCGCGGACG	.	PASS	Atlas-SNP
ARMC3	219681	hgsc.bcm.edu	37	10	23297301	23297301	+	Silent	SNP	C	C	T	rs11817610	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	81	75	0	1	0	C|0.513;T|0.487	0.487	strong	.	ARMC3	102	.	NM_173081	exon15	c.C1926T	p.N642N	AAAGAACAAGTAA	.	PASS	Atlas-SNP
CD109	135228	hgsc.bcm.edu	37	6	74466377	74466377	+	Silent	SNP	C	C	T	rs6453696	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	98	312	0	0.453704	0	C|0.387;T|0.613	0.613	strong	.	CD109	170	.	NM_133493	exon6	c.C645T	p.Y215Y	GACATACTATCAA	.	PASS	Atlas-SNP
TACC1	6867	hgsc.bcm.edu	37	8	38684853	38684853	+	Silent	SNP	T	T	C	rs2037204	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	127	250	1	0.465201	0.004	T|0.626;C|0.374	0.374	strong	.	TACC1	98	.	NM_006283	exon5	c.T1620C	p.P540P	TGTTCCTGTGTCT	.	PASS	Atlas-SNP
CCDC114	93233	hgsc.bcm.edu	37	19	48800914	48800914	+	Missense_Mutation	SNP	G	G	A	rs35461177	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	48	109	0	0.470588	0	G|0.793;A|0.207	0.207	strong	CCDC114,NS,carcinoma,0,1	CCDC114	100	1	NM_144577	exon13	c.C1403T	p.P468L	AAACCCGGGGGGT	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141707868	141707868	+	Silent	SNP	G	G	T	rs6748626	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	75	132	0	0.474684	0	G|0.770;T|0.230	0.230	strong	.	LRP1B	1315	.	NM_018557	exon20	c.C3072A	p.A1024A	ATCACAGGCCCAG	.	PASS	Atlas-SNP
PKDCC	91461	hgsc.bcm.edu	37	2	42275819	42275819	+	Silent	SNP	T	T	C	rs11897440	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	8	28	0	0.258065	0	T|0.448;C|0.552	0.552	strong	.	PKDCC	21	.	NM_138370	exon1	c.T480C	p.G160G	CGGCGGTGCCGCG	.	PASS	Atlas-SNP
OR5V1	81696	hgsc.bcm.edu	37	6	29323655	29323655	+	Silent	SNP	G	G	A	rs7761746	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	37	104	0	0.4625	0	G|0.926;A|0.074	0.074	strong	.	OR5V1	63	.	NM_030876	exon1	c.C318T	p.F106F	TACAAAGAAAACA	.	PASS	Atlas-SNP
SFTPD	6441	hgsc.bcm.edu	37	10	81702210	81702210	+	Missense_Mutation	SNP	G	G	C	rs17878336	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	45	56	0	0.642857	0	G|0.972;C|0.028	0.028	strong	.	SFTPD	43	.	NM_003019	exon4	c.C367G	p.L123V	TCCCCAGGGGACC	.	PASS	Atlas-SNP
EMC3	55831	hgsc.bcm.edu	37	3	10028294	10028294	+	Silent	SNP	G	G	A	rs11551739	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	75	148	0	0.471698	0	G|0.941;A|0.059	0.059	strong	.	EMC3	2	.	NM_018447	exon1	c.C52T	p.L18L	TGGGTAGGACCAC	.	PASS	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	37	2	24524958	24524958	+	Missense_Mutation	SNP	C	C	T	rs7603997	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	56	0	1	0	C|0.652;N|0.000	.	strong	.	ITSN2	224	.	NM_147152	exon10	c.G871A	p.V291I	CATCAACGTCAGC	.	PASS	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	37	18	14535001	14535001	+	Silent	SNP	G	G	C	rs61997955		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	706	92	808	0	0.130312	0	.	.	weak	POTEC,NS,carcinoma,0,2	POTEC	129	2	NM_001137671	exon4	c.C816G	p.G272G	TGTGAGGCCACAC	.	scavenged	Atlas-SNP
CYP27C1	339761	hgsc.bcm.edu	37	2	127961026	127961026	+	Missense_Mutation	SNP	A	A	G	rs139058558	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	66	177	0	0.431373	0	A|0.997;G|0.003	0.003	strong	.	CYP27C1	52	.	NM_001001665	exon2	c.T100C	p.Y34H	GGAGGTAGATTCT	.	PASS	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	37	6	46806809	46806809	+	Missense_Mutation	SNP	C	C	T	rs1804211	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	113	230	0	0.489177	0	C|0.738;T|0.262	0.262	strong	.	MEP1A	93	.	NM_005588	exon14	c.C2177T	p.T726M	GAGGCACGGCTGG	.	PASS	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	37	10	135012162	135012162	+	Missense_Mutation	SNP	T	T	C	rs2998139	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	56	141	0	0.478632	0	T|0.452;C|0.548	0.548	strong	KNDC1,NS,carcinoma,0,1	KNDC1	155	1	NM_152643	exon14	c.T2150C	p.L717P	TCTCCCTGGAGGC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511051	195511051	+	Missense_Mutation	SNP	C	C	A	rs74867514	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	368	20	377	25	0.0543478	0.066313	C|0.500;A|0.500	0.500	weak	MUC4_ENST00000463781,NS,carcinoma,+1,5	MUC4	1505	5	NM_018406	exon2	c.G7400T	p.G2467V	TCGGTGCCAGGAA	.	scavenged	Atlas-SNP
PPIH	10465	hgsc.bcm.edu	37	1	43131653	43131653	+	Silent	SNP	G	G	A	rs12244	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	117	211	0	0.464286	0	A|0.124;C|0.000;G|0.876	0.124	strong	PPIH,NS,carcinoma,+1,1	PPIH	15	1	NM_006347	exon7	c.G339A	p.A113A	TCAGGCGAACAGT	.	PASS	Atlas-SNP
PDLIM4	8572	hgsc.bcm.edu	37	5	131607096	131607096	+	Missense_Mutation	SNP	G	G	A	rs145687686	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	35	41	0	0.564516	0	G|0.997;A|0.003	0.003	strong	.	PDLIM4	22	.	NM_003687	exon5	c.G607A	p.A203T	GTGGCCGCGGAGC	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1263776	1263776	+	Missense_Mutation	SNP	C	C	T	rs2943510	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	125	198	0	0.514403	0	C|0.873;T|0.127	0.127	strong	.	MUC5B	473	.	NM_002458	exon31	c.C5666T	p.P1889L	GTACCCCAGCCAC	.	PASS	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	37	11	57563991	57563991	+	Silent	SNP	C	C	T	rs10896644	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	63	129	0	0.5625	0	C|0.728;T|0.272	0.272	strong	.	CTNND1	203	.	NM_001085461	exon6	c.C483T	p.D161D	ACCAGACGGGTTG	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214814925	214814925	+	Missense_Mutation	SNP	C	C	T	rs61732031	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	90	185	0	0.471204	0	C|0.987;T|0.013	0.013	strong	.	CENPF	321	.	NM_016343	exon12	c.C3244T	p.H1082Y	AAGGAACACCAAG	.	PASS	Atlas-SNP
APITD1-CORT	100526739	hgsc.bcm.edu	37	1	10511544	10511544	+	Silent	SNP	C	C	T	rs628462	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	180	165	0	0.994475	0	C|0.685;T|0.315	0.315	strong	CORT,colon,carcinoma,0,2	.	.	2	NM_198544	exon5	c.C387T	p.A129A	GGAAGCCCGGGAG	.	PASS	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	37	6	42532102	42532102	+	Silent	SNP	C	C	T	rs3749897	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	97	206	0	0.459716	0	C|0.559;G|0.000;T|0.440	0.440	strong	.	UBR2	134	.	NM_001184801	exon1	c.C45T	p.S15S	CCGGAGCTTGCTG	.	PASS	Atlas-SNP
UGT2B11	10720	hgsc.bcm.edu	37	4	70066376	70066376	+	Missense_Mutation	SNP	C	C	G	rs144149579	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	15	125	0	0.0993377	0	C|0.959;G|0.041	0.041	strong	UGT2B11,trunk,malignant_melanoma,0,1	UGT2B11	92	1	NM_001073	exon6	c.G1372C	p.D458H	CTCGATCCAGGGG	.	PASS	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	37	1	186277989	186277989	+	Silent	SNP	A	A	G	rs3737940	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	67	89	0	0.587719	0	A|0.735;G|0.265	0.265	strong	.	PRG4	259	.	NM_005807	exon7	c.A3138G	p.P1046P	AAAACCAAAGACG	.	PASS	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	37	1	19180860	19180860	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	76	170	0	0.490323	0	.	.	none	.	TAS1R2	134	.	NM_152232	exon3	c.C1104T	p.N368N	GGTGGCGTTCAGG	.	PASS	Atlas-SNP
POLRMT	5442	hgsc.bcm.edu	37	19	621063	621063	+	Silent	SNP	A	A	G	rs76890343	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	32	54	0	0.477612	0	A|0.839;G|0.161	0.161	strong	.	POLRMT	91	.	NM_005035	exon10	c.T2635C	p.L879L	CCGTCAAGGGTTG	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	37	3	47125385	47125385	+	Missense_Mutation	SNP	G	G	A	rs4082155	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	311	308	318	0	0.990354	0	G|0.524;A|0.476	0.476	strong	SETD2_ENST00000409792,NS,carcinoma,0,2	SETD2	721	2	NM_014159	exon12	c.C5885T	p.P1962L	TCTTTGGGCTCTA	.	PASS	Atlas-SNP
CLEC18A	348174	hgsc.bcm.edu	37	16	69988473	69988473	+	Silent	SNP	G	G	A	rs80122082	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	340	32	308	0	0.0941176	0	G|0.997;A|0.003	0.003	strong	.	CLEC18A	9	.	NM_001271197	exon4	c.G453A	p.T151T	CTACACGCAGGTG	.	PASS	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	37	15	27725917	27725917	+	Silent	SNP	C	C	T	rs77771286	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	24	45	0	0.444444	0	C|0.994;T|0.006	0.006	strong	.	GABRG3	115	.	NM_001270873	exon6	c.C696T	p.I232I	AGAAATCGTGACA	.	PASS	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	37	4	3444593	3444593	+	Silent	SNP	G	G	A	rs2073504	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	66	101	0	0.5	0	G|0.806;A|0.194	0.194	strong	HGFAC,NS,carcinoma,0,1	HGFAC	69	1	NM_001528	exon2	c.G252A	p.P84P	GCTCCCGCCCCCG	.	PASS	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39595536	39595536	+	Silent	SNP	C	C	T	rs17494404	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	47	90	0	0.52809	0	C|0.928;T|0.072	0.072	strong	.	KRT38	63	.	NM_006771	exon3	c.G651A	p.A217A	CAGGGTCGCATCA	.	PASS	Atlas-SNP
EFS	10278	hgsc.bcm.edu	37	14	23826822	23826822	+	Silent	SNP	C	C	T	rs2231809	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	83	83	0	0.965116	0	C|0.549;T|0.451	0.451	strong	.	EFS	37	.	NM_005864	exon6	c.G1299A	p.L433L	GAGCTGCAGATCT	.	PASS	Atlas-SNP
HJURP	55355	hgsc.bcm.edu	37	2	234749780	234749780	+	Missense_Mutation	SNP	G	G	C	rs3821238	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	42	68	0	0.482759	0	G|0.832;C|0.168	0.168	strong	HJURP,NS,carcinoma,0,1	HJURP	72	1	NM_018410	exon8	c.C1646G	p.S549C	ATTCCAGAACTAT	.	PASS	Atlas-SNP
IL10RB	3588	hgsc.bcm.edu	37	21	34640788	34640788	+	Missense_Mutation	SNP	A	A	G	rs2834167	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	61	152	0	0.438849	0	A|0.728;G|0.272	0.272	strong	.	IL10RB	37	.	NM_000628	exon2	c.A139G	p.K47E	TTTGCCAAAGGGA	.	PASS	Atlas-SNP
PTGER4	5734	hgsc.bcm.edu	37	5	40681254	40681254	+	Silent	SNP	C	C	T	rs2228058	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	80	161	0	0.462428	0	C|0.924;T|0.076	0.076	strong	.	PTGER4	49	.	NM_000958	exon2	c.C159T	p.T53T	GACGACCTTCTAC	.	PASS	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	37	1	66058513	66058513	+	Missense_Mutation	SNP	A	A	G	rs1137101	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	57	151	0	0.438462	0	A|0.463;G|0.537	0.537	strong	.	LEPR	284	.	NM_001003680	exon6	c.A668G	p.Q223R	TTTTCCAGTCACC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418344	105418344	+	Missense_Mutation	SNP	T	T	G	rs55791176	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	190	152	0	1	0	T|0.536;G|0.464	0.464	strong	AHNAK2_ENST00000333244,rectum,carcinoma,-1,2	AHNAK2	719	2	NM_138420	exon7	c.A3444C	p.E1148D	GGACAGTTCCCCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105410827	105410827	+	Missense_Mutation	SNP	C	C	T	rs28380382	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	197	183	0	1	0	C|0.468;T|0.532	0.532	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G10961A	p.G3654E	GACTTCCCTGGGG	.	PASS	Atlas-SNP
NSUN4	387338	hgsc.bcm.edu	37	1	46810670	46810670	+	Silent	SNP	T	T	C	rs17361763	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	68	145	0	0.489209	0	T|0.802;C|0.198	0.198	strong	.	NSUN4	26	.	NM_199044	exon2	c.T291C	p.D97D	CAAGGATTTTGTG	.	PASS	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279438	1279438	+	Missense_Mutation	SNP	C	C	T	rs202041848	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	46	220	1	0.359375	0.00454545	.	.	weak	TPSB2,NS,carcinoma,0,1	TPSB2	8	1	NM_024164	exon4	c.G253A	p.A85T	TGAGGGCGGCCAG	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280788	152280788	+	Missense_Mutation	SNP	T	T	G	rs66954353	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	492	146	305	0	0.296748	0	T|0.500;G|0.500	0.500	strong	.	FLG	900	.	NM_002016	exon3	c.A6574C	p.K2192Q	ATGTTTTTCTGCT	.	PASS	Atlas-SNP
MKNK2	2872	hgsc.bcm.edu	37	19	2039727	2039727	+	Missense_Mutation	SNP	C	C	T	rs34475638	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	54	72	0	0.586957	0	C|0.985;T|0.015	0.015	strong	.	MKNK2	56	.	NM_199054	exon14	c.G1283A	p.R428Q	GTAGCTCGGACCA	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8982266	8982266	+	Silent	SNP	G	G	A	rs76124866	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	33	88	0	0.434211	0	G|0.982;A|0.018	0.018	strong	.	MUC16	4315	.	NM_024690	exon70	c.C42009T	p.S14003S	TGGGCCGCTGAGG	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202718202	202718202	+	Silent	SNP	G	G	A	rs1892164	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	117	107	0	1	0	G|0.415;A|0.585	0.585	strong	.	KDM5B	166	.	NM_006618	exon14	c.C1887T	p.H629H	CTCATCGTGGGAA	.	PASS	Atlas-SNP
GAN	8139	hgsc.bcm.edu	37	16	81398635	81398635	+	Silent	SNP	C	C	T	rs2608555	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	43	71	0	0.5375	0	C|0.800;T|0.200	0.200	strong	.	GAN	59	.	NM_022041	exon8	c.C1293T	p.Y431Y	CTCCTACGGAAAG	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234386	45234386	+	Silent	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	7	62	0	0.12069	0	.	.	none	CDC27_ENST00000531206,NS,carcinoma,0,8	CDC27	337	8	NM_001114091	exon7	c.C735A	p.V245V	CAGTGGGACAGTA	.	scavenged	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71058184	71058184	+	Silent	SNP	C	C	T	rs13421115	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	56	111	0	0.482759	0	C|0.806;T|0.194	0.194	strong	.	CD207	47	.	NM_015717	exon6	c.G984A	p.P328P	CTGTCACGGTTCT	.	PASS	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	37	17	1636934	1636934	+	Missense_Mutation	SNP	A	A	G	rs3809870	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	26	96	0	0.382353	0	A|0.743;G|0.257	0.257	strong	.	WDR81	180	.	NM_001163809	exon7	c.A4603G	p.M1535V	CCCACCATGCCCG	.	PASS	Atlas-SNP
MMEL1	79258	hgsc.bcm.edu	37	1	2560882	2560882	+	Silent	SNP	G	G	A	rs4648658	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	107	91	0	0.990741	0	G|0.473;A|0.527	0.527	strong	.	MMEL1	64	.	NM_033467	exon2	c.C42T	p.A14A	ACGGCCGGCGCTC	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240795	39240795	+	Missense_Mutation	SNP	A	A	T	rs9894966	bycluster;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	11	15	0	0.174603	0	.	.	weak	KRTAP4-7,NS,carcinoma,0,1	KRTAP4-7	49	1	NM_033061	exon1	c.A337T	p.S113C	CGCCCCAGCTGCT	.	scavenged	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	37	10	93816	93816	+	Silent	SNP	C	C	T	rs9329305	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	50	158	0	0.471698	0	C|0.751;T|0.249	0.249	strong	TUBB8,NS,carcinoma,0,1	TUBB8	62	1	NM_177987	exon4	c.G516A	p.S172S	CTTGGGCGAGGGC	.	PASS	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	37	2	204058557	204058557	+	Missense_Mutation	SNP	C	C	G	rs114408639	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	45	101	0	0.473684	0	C|0.997;G|0.003	0.003	strong	.	NBEAL1	266	.	NM_001114132	exon46	c.C6874G	p.Q2292E	GCAGTGCAGAAGC	.	PASS	Atlas-SNP
SPATA21	374955	hgsc.bcm.edu	37	1	16736132	16736132	+	Missense_Mutation	SNP	T	T	C	rs4661746	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	67	43	0	1	0	T|0.794;C|0.206	0.206	strong	.	SPATA21	47	.	NM_198546	exon6	c.A551G	p.Q184R	CTGCTCTGGTGCA	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72993706	72993706	+	Silent	SNP	G	G	A	rs62053191	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	56	109	0	0.466667	0	G|0.958;A|0.042	0.042	strong	.	ZFHX3	404	.	NM_006885	exon2	c.C339T	p.A113A	GTCGCTGGCGCTC	.	PASS	Atlas-SNP
ABHD16B	140701	hgsc.bcm.edu	37	20	62493978	62493978	+	Missense_Mutation	SNP	G	G	A	rs74444574	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	9	4	0	0.9	0	G|0.929;A|0.071	0.071	strong	.	ABHD16B	22	.	NM_080622	exon1	c.G1085A	p.R362Q	TGGCGCGAGAGGG	.	PASS	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	37	1	89847444	89847444	+	Missense_Mutation	SNP	A	A	G	rs4658146	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	159	143	0	1	0	A|0.210;G|0.790	0.790	strong	.	GBP6	87	.	NM_198460	exon7	c.A1063G	p.M355V	CTGGACATGCATG	.	PASS	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	37	15	52446260	52446260	+	Silent	SNP	C	C	T	rs35581121	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	28	45	0	0.54902	0	C|0.973;T|0.027	0.027	strong	.	GNB5	28	.	NM_016194	exon4	c.G252A	p.A84A	CCGCTCCGCCACC	.	PASS	Atlas-SNP
SPATA4	132851	hgsc.bcm.edu	37	4	177113836	177113836	+	Silent	SNP	C	C	T	rs6832177	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	82	160	0	0.4	0	C|0.701;T|0.299	0.299	strong	SPATA4,NS,carcinoma,-1,1	SPATA4	44	1	NM_144644	exon4	c.G630A	p.A210A	GAACTCCGCTTTA	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79403682	79403682	+	Silent	SNP	C	C	T	rs41327848	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	56	126	0	0.414815	0	C|0.828;T|0.172	0.172	strong	.	FRAS1	779	.	NM_025074	exon58	c.C8745T	p.F2915F	CACATTCCAAGAT	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43531085	43531085	+	Missense_Mutation	SNP	A	A	T	rs139776068	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	94	180	0	0.487047	0	A|0.992;T|0.008	0.008	strong	.	UMODL1	186	.	NM_173568	exon11	c.A1753T	p.N585Y	CTAGAGAACTTCA	.	PASS	Atlas-SNP
MPHOSPH9	10198	hgsc.bcm.edu	37	12	123645803	123645803	+	Silent	SNP	G	G	A	rs1051431	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	104	104	1	1	0.00961538	G|0.376;A|0.624	0.624	strong	.	MPHOSPH9	75	.	NM_022782	exon18	c.C2805T	p.Y935Y	CTGTTCGTAGCTA	.	PASS	Atlas-SNP
CYB5R2	51700	hgsc.bcm.edu	37	11	7687715	7687715	+	Missense_Mutation	SNP	T	T	C	rs12801394	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	63	129	0	0.459854	0	T|0.205;C|0.795	0.795	strong	.	CYB5R2	23	.	NM_016229	exon8	c.A625G	p.N209D	ACAGGTTGAACTG	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21263900	21263900	+	Missense_Mutation	SNP	G	G	A	rs1367117	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	47	53	0	0.546512	0	G|0.784;A|0.216	0.216	strong	APOB,NS,carcinoma,0,1	APOB	761	1	NM_000384	exon4	c.C293T	p.T98I	TTCAGGGTGCACT	.	PASS	Atlas-SNP
SLAMF1	6504	hgsc.bcm.edu	37	1	160616703	160616703	+	Missense_Mutation	SNP	G	G	T	rs2295612	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	75	189	0	0.449102	0	G|0.877;T|0.123	0.123	strong	SLAMF1,colon,carcinoma,0,1	SLAMF1	74	1	NM_003037	exon1	c.C33A	p.F11L	CAGCACGAAGGTC	.	PASS	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	37	9	33798052	33798052	+	Silent	SNP	C	C	T	rs377380263		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	6	124	0	0.0465116	0	.	.	weak	PRSS3_ENST00000361005,NS,carcinoma,0,3	PRSS3	79	3	NM_007343	exon3	c.C597T	p.S199S	CATCTCCGGCTGG	.	scavenged	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	37	12	662412	662412	+	Missense_Mutation	SNP	G	G	C	rs35419938	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	41	71	0	0.546667	0	G|0.995;C|0.005	0.005	strong	.	B4GALNT3	64	.	NM_173593	exon14	c.G1323C	p.E441D	AGAGGAGACCCCT	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152192555	152192555	+	Missense_Mutation	SNP	T	T	C	rs41266134	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	55	99	0	0.474138	0	T|0.836;C|0.164	0.164	strong	.	HRNR	403	.	NM_001009931	exon3	c.A1550G	p.Y517C	TGACCATAGCTGG	.	PASS	Atlas-SNP
SOWAHD	347454	hgsc.bcm.edu	37	X	118893054	118893054	+	Silent	SNP	C	C	A	rs2782223	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	27	26	0	0.964286	0	C|0.399;A|0.601	0.601	strong	.	.	.	.	NM_001105576	exon1	c.C424A	p.R142R	CTGCTGCGGGGCG	.	PASS	Atlas-SNP
C20orf111	51526	hgsc.bcm.edu	37	20	42826379	42826379	+	Silent	SNP	C	C	T	rs11274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	19	27	0	0.542857	0	C|0.685;N|0.000	.	strong	.	C20orf111	28	.	NM_016470	exon4	c.G192A	p.G64G	TGTAGACCTAAAG	.	PASS	Atlas-SNP
B3GNT6	192134	hgsc.bcm.edu	37	11	76751608	76751608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	8	11	0	0.470588	0	.	.	none	.	B3GNT6	27	.	NM_138706	exon5	c.C1010T	p.P337L	GCTTGCCTGGCGC	.	PASS	Atlas-SNP
USP33	23032	hgsc.bcm.edu	37	1	78163080	78163080	+	Silent	SNP	C	C	T	rs34351666	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	101	240	0	0.448889	0	C|0.947;T|0.053	0.053	strong	.	USP33	87	.	NM_015017	exon25	c.G2751A	p.L917L	AGGTCGCAGGATA	.	PASS	Atlas-SNP
MRPL35	51318	hgsc.bcm.edu	37	2	86433240	86433240	+	Missense_Mutation	SNP	C	C	T	rs10901	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	380	190	412	4	0.5	0.00970874	T|0.269;G|0.143	0.269	strong	MRPL35,NS,adenoma,0,2	MRPL35	23	2	NM_016622	exon2	c.C55T	p.P19S	CTACGGCCCCTGA	.	scavenged	Atlas-SNP
NIN	51199	hgsc.bcm.edu	37	14	51192659	51192659	+	Silent	SNP	G	G	A	rs1983764	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	232	221	0	1	0	G|0.744;A|0.256	0.256	strong	.	NIN	475	.	NM_182946	exon30	c.C6204T	p.P2068P	ATGACCGGGTAGG	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	37	2	73828453	73828453	+	Missense_Mutation	SNP	C	C	T	rs200897773	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	115	208	0	0.49569	0	.	.	weak	.	ALMS1	384	.	NM_015120	exon19	c.C12001T	p.R4001W	CCACTGCGGGAGC	.	PASS	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	37	9	78506187	78506187	+	Silent	SNP	T	T	C	rs7040769	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	29	99	0	0.58	0	T|0.760;C|0.240	0.240	strong	.	PCSK5	329	.	NM_006200	exon1	c.T90C	p.C30C	CGTGTGTCGGACG	.	PASS	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	37	3	36897812	36897812	+	Missense_Mutation	SNP	T	T	C	rs11712950	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	32	54	0	0.551724	0	T|0.690;C|0.310	0.310	strong	.	TRANK1	398	.	NM_014831	exon12	c.A3269G	p.E1090G	TCCTCCTCCTCTT	.	PASS	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	50038878	50038878	+	Missense_Mutation	SNP	G	G	C	rs41283281	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	113	246	0	0.42803	0	G|0.954;C|0.046	0.046	strong	.	WDFY4	205	.	NM_020945	exon38	c.G6474C	p.E2158D	TGAAGAGGTCACA	.	PASS	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	37	10	85993910	85993910	+	Silent	SNP	G	G	A	rs3814206	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	41	57	0	0.488095	0	G|0.431;A|0.569	0.569	strong	.	LRIT1	73	.	NM_015613	exon3	c.C814T	p.L272L	GTAGCAGTGCTGT	.	PASS	Atlas-SNP
BTBD10	84280	hgsc.bcm.edu	37	11	13443250	13443250	+	Silent	SNP	C	C	T	rs3789325	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	57	106	0	0.495652	0	C|0.866;T|0.134	0.134	strong	.	BTBD10	43	.	NM_032320	exon3	c.G237A	p.T79T	AGACTCCGTTCTT	.	PASS	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	37	19	3752874	3752874	+	Missense_Mutation	SNP	A	A	G	rs8102086	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	24	94	0	0.311688	0	A|0.470;C|0.000;G|0.530	0.530	strong	.	APBA3	28	.	NM_004886	exon7	c.T1126C	p.C376R	GGTGGCAGGCGCC	.	PASS	Atlas-SNP
GPR55	9290	hgsc.bcm.edu	37	2	231775144	231775144	+	Silent	SNP	G	G	A	rs1992187	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	80	152	0	0.529801	0	G|0.954;A|0.046	0.046	strong	GPR55,NS,carcinoma,-1,2	GPR55	46	2	NM_005683	exon2	c.C534T	p.S178S	CTTGGCGCTCCAG	.	PASS	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	37	17	9511492	9511492	+	Silent	SNP	C	C	T	rs146548028	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	90	134	0	0.526316	0	C|0.999;T|0.001	0.001	strong	WDR16,NS,carcinoma,0,1	WDR16	67	1	NM_145054	exon7	c.C810T	p.A270A	TGGAGCCGGACTG	.	PASS	Atlas-SNP
SOAT2	8435	hgsc.bcm.edu	37	12	53497402	53497402	+	Missense_Mutation	SNP	A	A	G	rs9658625	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	32	87	0	0.516129	0	A|0.901;G|0.099	0.099	strong	.	SOAT2	44	.	NM_003578	exon1	c.A41G	p.E14G	GGACAGAAGGGCT	.	PASS	Atlas-SNP
SIGLEC11	114132	hgsc.bcm.edu	37	19	50453317	50453317	+	Silent	SNP	C	C	T	rs9304690	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	50	104	0	0.454545	0	C|0.803;T|0.197	0.197	strong	SIGLEC11,colon,carcinoma,0,1	SIGLEC11	70	1	NM_052884	exon11	c.G2007A	p.S669S	GATCTCCGAGTAC	.	PASS	Atlas-SNP
PDE6C	5146	hgsc.bcm.edu	37	10	95395364	95395364	+	Silent	SNP	C	C	G	rs3737228	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	57	127	0	0.504425	0	C|0.752;G|0.248	0.248	strong	.	PDE6C	97	.	NM_006204	exon10	c.C1380G	p.T460T	CCAAACCAAAGCC	.	PASS	Atlas-SNP
KLC4	89953	hgsc.bcm.edu	37	6	43034850	43034850	+	Missense_Mutation	SNP	C	C	T	rs4714660	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	82	150	0	0.479532	0	C|0.869;T|0.131	0.131	strong	.	KLC4	89	.	NM_138343	exon6	c.C908T	p.T303M	ACCCCACGCCCCG	.	PASS	Atlas-SNP
LYN	4067	hgsc.bcm.edu	37	8	56866452	56866452	+	Silent	SNP	G	G	A	rs2227980	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	60	104	0	0.540541	0	G|0.860;A|0.140	0.140	strong	.	LYN	54	.	NM_002350	exon8	c.G699A	p.K233K	ACAGAAGCCATGG	.	PASS	Atlas-SNP
COQ3	51805	hgsc.bcm.edu	37	6	99819379	99819379	+	Missense_Mutation	SNP	T	T	C	rs6925344	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	41	97	0	0.401961	0	T|0.206;C|0.794	0.794	strong	.	COQ3	19	.	NM_017421	exon6	c.A814G	p.S272G	CAATACTTGCAAT	.	PASS	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	37	20	56137184	56137184	+	Silent	SNP	C	C	T	rs6070157	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	43	65	0	0.565789	0	C|0.851;T|0.149	0.149	strong	.	PCK1	95	.	NM_002591	exon3	c.C282T	p.I94I	GGTTATCGTCACC	.	PASS	Atlas-SNP
PGLYRP2	114770	hgsc.bcm.edu	37	19	15586672	15586672	+	Missense_Mutation	SNP	A	A	T	rs892145	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	38	76	0	0.422222	0	A|0.632;T|0.368	0.368	strong	PGLYRP2_ENST00000292609,NS,carcinoma,0,4	PGLYRP2	116	4	NM_052890	exon2	c.T809A	p.M270K	AAGGCCATGGTTA	.	PASS	Atlas-SNP
RIN1	9610	hgsc.bcm.edu	37	11	66099992	66099992	+	Missense_Mutation	SNP	G	G	A	rs139103405	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	50	79	0	0.471698	0	G|0.999;A|0.001	0.001	strong	.	RIN1	64	.	NM_004292	exon10	c.C2107T	p.R703W	CCGCCCGGCGGTA	.	PASS	Atlas-SNP
NOC2L	26155	hgsc.bcm.edu	37	1	880502	880502	+	Missense_Mutation	SNP	C	C	T	rs74047418	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	52	99	0	0.514852	0	C|0.998;T|0.002	0.002	strong	.	NOC2L	42	.	NM_015658	exon18	c.G2078A	p.R693Q	CCATGCCGAGTGC	.	PASS	Atlas-SNP
RAB17	64284	hgsc.bcm.edu	37	2	238494681	238494681	+	Silent	SNP	G	G	A	rs34052613	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	108	243	0	0.440816	0	G|0.890;A|0.110	0.110	strong	.	RAB17	17	.	NM_022449	exon2	c.C117T	p.Y39Y	CTTCACGTACCGA	.	PASS	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	37	5	149497228	149497228	+	Silent	SNP	G	G	A	rs2228440	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	41	77	0	0.5	0	G|0.910;A|0.091	0.091	strong	.	PDGFRB	142	.	NM_002609	exon22	c.C3090T	p.P1030P	AACCTCGGGTTTG	.	PASS	Atlas-SNP
ATE1	11101	hgsc.bcm.edu	37	10	123662023	123662023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	77	158	0	0.463855	0	.	.	none	.	ATE1	67	.	NM_001001976	exon6	c.C696A	p.F232L	AGCCTGGAAACCC	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43531553	43531553	+	Missense_Mutation	SNP	A	A	C	rs220128	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	34	71	0	0.485714	0	A|0.568;C|0.432	0.432	strong	.	UMODL1	186	.	NM_173568	exon11	c.A2221C	p.T741P	AAGGCTACTGGGT	.	PASS	Atlas-SNP
NCOA1	8648	hgsc.bcm.edu	37	2	24974958	24974958	+	Missense_Mutation	SNP	C	C	T	rs1804645	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	311	144	308	0	0.463023	0	C|0.982;T|0.018	0.018	strong	.	NCOA1	210	.	NM_147223	exon18	c.C3814T	p.P1272S	CAAACTCCACCTG	.	PASS	Atlas-SNP
CLEC2A	387836	hgsc.bcm.edu	37	12	10069302	10069302	+	Missense_Mutation	SNP	C	C	T	rs526680	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	220	228	0	0.986547	0	C|0.484;T|0.516	0.516	strong	CLEC2A,NS,carcinoma,0,1	CLEC2A	12	1	NM_001130711	exon4	c.G407A	p.G136D	CACCAACCATTGA	.	PASS	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	37	1	157504422	157504422	+	Missense_Mutation	SNP	C	C	T	rs73011567	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	50	129	0	0.446429	0	C|0.903;T|0.097	0.097	strong	.	FCRL5	177	.	NM_031281	exon8	c.G1663A	p.V555M	GGCTCACCACTTC	.	PASS	Atlas-SNP
BPI	671	hgsc.bcm.edu	37	20	36939052	36939052	+	Silent	SNP	G	G	C	rs5743507	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	43	93	0	0.467391	0	G|0.928;C|0.072	0.072	strong	BPI,caecum,carcinoma,0,1	BPI	67	1	NM_001725	exon4	c.G546C	p.V182V	CAAAGTGGGGTAT	.	PASS	Atlas-SNP
FAM161B	145483	hgsc.bcm.edu	37	14	74402693	74402693	+	Silent	SNP	C	C	T	rs17182699	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	70	179	0	0.443038	0	C|0.935;T|0.065	0.065	strong	.	FAM161B	67	.	NM_152445	exon8	c.G1953A	p.R651R	AACAGCCCGGGTG	.	PASS	Atlas-SNP
DRD5	1816	hgsc.bcm.edu	37	4	9784631	9784631	+	Silent	SNP	C	C	T	rs6283	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	52	50	0	0.981132	0	C|0.407;T|0.593	0.593	strong	DRD5,NS,carcinoma,+2,1	DRD5	119	1	NM_000798	exon1	c.C978T	p.P326P	ACACCCCGAAGGC	.	PASS	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	37	12	109826535	109826535	+	Silent	SNP	G	G	A	rs61742038	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	85	132	0	0.494186	0	G|0.947;A|0.053	0.053	strong	.	MYO1H	98	.	NM_001101421	exon1	c.G12A	p.A4A	AGGGGCGCTGACT	.	PASS	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	37	9	133901819	133901819	+	Missense_Mutation	SNP	C	C	A	rs2275137	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	81	153	0	0.48503	0	C|0.716;A|0.284	0.284	strong	.	LAMC3	167	.	NM_006059	exon2	c.C521A	p.P174H	GCCGGCCCGAGGG	.	PASS	Atlas-SNP
KIR3DL3	115653	hgsc.bcm.edu	37	19	55246812	55246812	+	Missense_Mutation	SNP	G	G	C	rs180893263	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	70	156	0	0.886076	0	.	.	strong	.	KIR3DL3	46	.	NM_153443	exon6	c.G1042C	p.A348P	TGGTGTGCCAACA	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183072590	183072590	+	Silent	SNP	T	T	C	rs2296288	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	98	160	0	0.513089	0	T|0.487;C|0.513	0.513	strong	.	LAMC1	176	.	NM_002293	exon2	c.T546C	p.C182C	TTCCTGTGAGAAC	.	PASS	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55539057	55539057	+	Missense_Mutation	SNP	G	G	A	rs444772	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	67	48	0	1	0	G|0.735;A|0.265	0.265	strong	RP1,caecum,carcinoma,0,1	RP1	429	1	NM_006269	exon4	c.G2615A	p.R872H	AAAAACGTAAAGG	.	PASS	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	37	1	7723588	7723588	+	Silent	SNP	C	C	T	rs3737906	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	56	114	0	0.589474	0	C|0.901;T|0.099	0.099	strong	.	CAMTA1	226	.	NM_015215	exon9	c.C981T	p.N327N	GAGGAACGGCAAG	.	PASS	Atlas-SNP
CLEC18B	497190	hgsc.bcm.edu	37	16	74451970	74451970	+	Missense_Mutation	SNP	G	G	C	rs3869428		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	722	27	565	0	0.0373961	0	.	.	weak	CLEC18B,mouth,carcinoma,0,1	CLEC18B	45	1	NM_001011880	exon3	c.C443G	p.T148S	TAGTGGGTGCAGG	.	scavenged	Atlas-SNP
EML3	256364	hgsc.bcm.edu	37	11	62378660	62378660	+	Silent	SNP	G	G	A	rs12808829	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	13	24	0	0.565217	0	G|0.761;A|0.239	0.239	strong	.	EML3	61	.	NM_153265	exon3	c.C351T	p.S117S	GGTCCCGCTAGGC	.	PASS	Atlas-SNP
NAGS	162417	hgsc.bcm.edu	37	17	42084067	42084067	+	Silent	SNP	T	T	C	rs55708447	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	44	80	0	0.53012	0	T|0.864;C|0.136	0.136	strong	.	NAGS	25	.	NM_153006	exon4	c.T1086C	p.F362F	GCTCTTTAGCAAC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412347	105412347	+	Silent	SNP	C	C	T	rs55842266		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	8	264	1	0.333333	0.00378788	.	.	weak	AHNAK2_ENST00000333244,NS,neuroblastoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.G9441A	p.K3147K	CTTGAACTTGGGC	.	scavenged	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	37	1	94512565	94512565	+	Missense_Mutation	SNP	C	C	T	rs1801581	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	49	132	0	0.422414	0	C|0.975;T|0.025	0.025	strong	.	ABCA4	275	.	NM_000350	exon19	c.G2828A	p.R943Q	GCTGGCCGGCCAC	.	PASS	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	37	3	148858267	148858267	+	Missense_Mutation	SNP	A	A	G	rs199722122	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	79	125	0	0.593985	0	A|0.999;G|0.001	0.001	weak	.	HPS3	104	.	NM_032383	exon2	c.A694G	p.I232V	AATCGAATAAGAC	.	PASS	Atlas-SNP
MASP1	5648	hgsc.bcm.edu	37	3	186954324	186954324	+	Silent	SNP	G	G	A	rs3774268	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	49	90	0	0.480392	0	G|0.853;A|0.147	0.147	strong	.	MASP1	240	.	NM_139125	exon11	c.C1335T	p.S445S	GACCAGGCTTGGC	.	PASS	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153909069	153909069	+	Silent	SNP	G	G	C	rs1043608	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	107	187	0	0.545918	0	G|0.706;C|0.294	0.294	strong	.	DENND4B	210	.	NM_014856	exon16	c.C2388G	p.A796A	ATGGTAGGCTGTG	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121210069	121210069	+	Silent	SNP	T	T	C	rs2305598	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	186	193	0	0.984127	0	T|0.406;C|0.594	0.594	strong	COL14A1,rectum,carcinoma,0,1	COL14A1	292	1	NM_021110	exon7	c.T612C	p.G204G	TAGTGGTGACCCC	.	PASS	Atlas-SNP
TBATA	219793	hgsc.bcm.edu	37	10	72536936	72536936	+	Silent	SNP	A	A	G	rs2254433	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	29	40	1	0.460317	0.025	A|0.710;G|0.290	0.290	strong	C10orf27,NS,carcinoma,-2,1	.	.	1	NM_152710	exon7	c.T663C	p.A221A	GAGGAAAGCCTGG	.	scavenged	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109691676	109691676	+	Missense_Mutation	SNP	A	A	G	rs3814538	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	34	74	0	0.492754	0	G|0.519;N|0.001	0.519	strong	.	ZNF462	322	.	NM_021224	exon3	c.A5483G	p.N1828S	GAGGCAACTTTGA	.	PASS	Atlas-SNP
FAM86B1	85002	hgsc.bcm.edu	37	8	12044010	12044010	+	Missense_Mutation	SNP	C	C	T	rs201876260	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	25	155	0	0.195312	0	C|0.983;T|0.016	0.016	strong	FAM86B1,NS,carcinoma,0,1	FAM86B1	7	1	NM_001083537	exon5	c.G491A	p.R164Q	TTCCCTCGGAGCT	.	scavenged	Atlas-SNP
ABCB8	11194	hgsc.bcm.edu	37	7	150732812	150732812	+	Missense_Mutation	SNP	C	C	T	rs17545756	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	35	67	0	0.466667	0	C|0.964;T|0.036	0.036	strong	.	ABCB8	65	.	NM_007188	exon6	c.C910T	p.R304C	TTGTCTCGCCAGT	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39253969	39253969	+	Missense_Mutation	SNP	T	T	G	rs147906218	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	21	73	0	0.328125	0	T|0.629;G|0.371	0.371	strong	KRTAP4-8,NS,carcinoma,+1,1	KRTAP4-8	57	1	NM_031960	exon1	c.A368C	p.N123T	CAGCAGTTGGGCT	.	PASS	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	37	17	7399866	7399866	+	Silent	SNP	G	G	A	rs2301609	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	55	123	0	0.398551	0	G|0.810;A|0.190	0.190	strong	.	POLR2A	157	.	NM_000937	exon4	c.G471A	p.G157G	GGGTGGGGAGGAG	.	PASS	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	37	9	111668652	111668652	+	Missense_Mutation	SNP	C	C	T	rs838827	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	72	138	0	0.507042	0	C|0.924;T|0.076	0.076	strong	.	IKBKAP	122	.	NM_003640	exon14	c.G1574A	p.R525Q	ACAGACCGGGGGC	.	PASS	Atlas-SNP
ZNF354B	117608	hgsc.bcm.edu	37	5	178294059	178294059	+	Silent	SNP	T	T	C	rs11952817	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	125	200	0	0.516529	0	T|0.635;C|0.365	0.365	strong	ZNF354B,NS,carcinoma,0,1	ZNF354B	67	1	NM_058230	exon4	c.T243C	p.G81G	TTCTGGTGTCTCC	.	PASS	Atlas-SNP
PKN1	5585	hgsc.bcm.edu	37	19	14578707	14578707	+	Missense_Mutation	SNP	G	G	A	rs35416389	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	42	53	0	0.552632	0	G|0.971;A|0.029	0.029	strong	.	PKN1	99	.	NM_213560	exon15	c.G1922A	p.R641Q	AATTCCGGCCCAG	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225380564	225380564	+	Missense_Mutation	SNP	A	A	G	rs191528375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	75	76	0	0.418994	0	A|0.993;G|0.007	0.007	strong	.	DNAH14	300	.	NM_001373	exon37	c.A5771G	p.K1924R	ACACAAAGAAAGA	.	PASS	Atlas-SNP
BAIAP2L1	55971	hgsc.bcm.edu	37	7	97922875	97922875	+	Silent	SNP	G	G	A	rs13008	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	55	122	0	0.474138	0	G|0.717;A|0.283	0.283	strong	.	BAIAP2L1	61	.	NM_018842	exon14	c.C1494T	p.R498R	AGTCGGGCGGAGT	.	PASS	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	37	6	43406501	43406501	+	Silent	SNP	C	C	T	rs2277122	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	63	144	0	0.484615	0	C|0.947;T|0.053	0.053	strong	.	ABCC10	118	.	NM_001198934	exon8	c.C2095T	p.L699L	GAGGTGCTAGAAG	.	PASS	Atlas-SNP
OXER1	165140	hgsc.bcm.edu	37	2	42990522	42990522	+	Silent	SNP	C	C	T	rs12712859	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	39	48	0	0.5	0	C|0.719;T|0.281	0.281	strong	.	OXER1	33	.	NM_148962	exon1	c.G798A	p.A266A	GATGAGCGCCAGT	.	PASS	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33359370	33359370	+	Missense_Mutation	SNP	C	C	T	rs11072170	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	51	100	0	0.476636	0	C|0.730;T|0.270	0.270	strong	FMN1_ENST00000334528,NS,carcinoma,0,1	FMN1	174	1	NM_001103184	exon1	c.G716A	p.G239E	TGGGACCCTTCTT	.	PASS	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	37	19	55672055	55672055	+	Missense_Mutation	SNP	A	A	G	rs890871	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	9	39	0	0.236842	0	A|0.920;G|0.080	0.080	strong	.	.	.	.	NM_001256714	exon9	c.T1205C	p.L402P	TCCTCCAGGTCCC	.	PASS	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	37	7	24758753	24758753	+	Silent	SNP	C	C	T	rs754555	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	49	95	0	0.556818	0	C|0.802;T|0.198	0.198	strong	.	DFNA5	51	.	NM_001127453	exon4	c.G489A	p.T163T	CATCGTCGTGATC	.	PASS	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130104206	130104206	+	Silent	SNP	A	A	G	rs10212372	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	30	61	0	0.4	0	A|0.613;G|0.387	0.387	strong	.	COL6A5	205	.	NM_153264	exon5	c.A1860G	p.K620K	TGAAAAAGGTAAG	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79029594	79029594	+	Missense_Mutation	SNP	T	T	C	rs1019762	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	45	71	0	0.5	0	T|0.888;C|0.112	0.112	strong	.	CMYA5	643	.	NM_153610	exon2	c.T5006C	p.L1669S	CTGTTTTAGAAAA	.	PASS	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	37	4	103505961	103505961	+	Silent	SNP	C	C	T	rs4648039	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	70	106	0	0.522388	0	C|0.983;T|0.017	0.017	strong	.	NFKB1	78	.	NM_003998	exon11	c.C1050T	p.Y350Y	CCTCTACTATCCT	.	PASS	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	37	13	42764564	42764564	+	Silent	SNP	C	C	G	rs7324235	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	57	0	1	0	C|0.796;G|0.204	0.204	strong	DGKH,caecum,carcinoma,0,1	DGKH	106	1	NM_001204504	exon17	c.C1938G	p.P646P	TCACCCCTGTGAA	.	PASS	Atlas-SNP
TRIM15	89870	hgsc.bcm.edu	37	6	30131527	30131527	+	Silent	SNP	G	G	T	rs11961941	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	45	100	0	0.428571	0	G|0.964;T|0.036	0.036	strong	.	TRIM15	34	.	NM_033229	exon1	c.G66T	p.P22P	GGGGCCGCTGGAG	.	PASS	Atlas-SNP
NDUFAF2	91942	hgsc.bcm.edu	37	5	60241142	60241142	+	Silent	SNP	G	G	A	rs79660491	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	153	149	0	0.916168	0	.	.	weak	.	NDUFAF2	10	.	NM_174889	exon1	c.G60A	p.K20K	AGTGAAGGAGCAC	.	PASS	Atlas-SNP
PSG3	5671	hgsc.bcm.edu	37	19	43243217	43243217	+	Missense_Mutation	SNP	A	A	G	rs34721205	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	93	226	1	0.413333	0.00442478	.	.	alt	PSG3,NS,carcinoma,-1,1	PSG3	82	1	NM_021016	exon2	c.T89C	p.L30S	GTAGGCAAGTTCC	.	scavenged	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	37	14	95912388	95912388	+	Missense_Mutation	SNP	G	G	A	rs61749972	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	39	83	0	0.4875	0	G|0.929;A|0.071	0.071	strong	.	SYNE3	130	.	NM_152592	exon8	c.C1490T	p.T497M	AGCATCGTCAGCA	.	PASS	Atlas-SNP
FBXO42	54455	hgsc.bcm.edu	37	1	16577908	16577908	+	Missense_Mutation	SNP	G	G	C	rs12069239	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	179	193	0	1	0	G|0.654;C|0.346	0.346	strong	.	FBXO42	53	.	NM_018994	exon10	c.C1411G	p.P471A	CTTCAGGAGCAGA	.	PASS	Atlas-SNP
SLC6A5	9152	hgsc.bcm.edu	37	11	20623007	20623007	+	Silent	SNP	C	C	T	rs7109418	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	33	25	0	0.970588	0	C|0.774;T|0.226	0.226	strong	.	SLC6A5	151	.	NM_004211	exon2	c.C336T	p.S112S	GAGCTCCGGGCCC	.	PASS	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	37	14	104452640	104452640	+	Silent	SNP	G	G	A	rs10143389	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	70	112	0	0.530303	0	G|0.674;A|0.326	0.326	strong	TDRD9_ENST00000409874,NS,carcinoma,0,2	TDRD9	175	2	NM_153046	exon8	c.G1098A	p.L366L	TGACTTGGATATG	.	PASS	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61513649	61513649	+	Missense_Mutation	SNP	G	G	T	rs6011441	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	50	133	0	0.420168	0	A|0.000;G|0.803;T|0.197	0.197	strong	DIDO1,NS,carcinoma,+1,1	DIDO1	321	1	NM_001193369	exon16	c.C3659A	p.P1220Q	TCTTCCGGTTGAA	.	PASS	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	37	19	4512669	4512669	+	Missense_Mutation	SNP	T	T	C	rs55901236	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	188	103	1	0.989474	0.00970874	T|0.494;C|0.506	0.506	strong	.	PLIN4	191	.	NM_001080400	exon3	c.A1261G	p.T421A	AGACGGTGTCCTT	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	37	7	20691219	20691219	+	Silent	SNP	G	G	A	rs61227829	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	77	142	0	0.442529	0	G|0.914;A|0.086	0.086	strong	ABCB5_ENST00000443026,NS,carcinoma,+1,4	ABCB5	357	4	NM_001163941	exon13	c.G1509A	p.A503A	AAATGCGTATGAT	.	PASS	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	37	16	31090269	31090269	+	Missense_Mutation	SNP	C	C	T	rs75586809	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	38	73	0	0.413043	0	C|0.989;T|0.011	0.011	strong	ZNF646,NS,haematopoietic_neoplasm,0,1	ZNF646	133	1	NM_014699	exon2	c.C2624T	p.A875V	GGGAGGCGACCTC	.	PASS	Atlas-SNP
GOLGA6L6	727832	hgsc.bcm.edu	37	15	20739865	20739865	+	Silent	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	17	57	0	0.34	0	.	.	none	GOLGA6L6,NS,carcinoma,+1,1	GOLGA6L6	37	1	NM_001145004	exon8	c.C1885A	p.R629R	GCTCCCGTATCTT	.	scavenged	Atlas-SNP
APOL3	80833	hgsc.bcm.edu	37	22	36537725	36537725	+	Silent	SNP	G	G	A	rs61731692	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	22	45	0	0.511628	0	G|0.888;A|0.112	0.112	strong	.	APOL3	60	.	NM_145640	exon3	c.C732T	p.Y244Y	TGATGTGTATGAG	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32137852	32137852	+	Silent	SNP	C	C	G	rs3759297	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	38	70	0	0.506667	0	C|0.840;G|0.160	0.160	strong	C12orf35,NS,lymphoid_neoplasm,+1,1	.	.	1	NM_018169	exon4	c.C3963G	p.T1321T	GGAAACCCGACAG	.	PASS	Atlas-SNP
FCER2	2208	hgsc.bcm.edu	37	19	7754194	7754194	+	Missense_Mutation	SNP	C	C	T	rs8102872	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	63	77	0	0.583333	0	C|0.986;T|0.014	0.014	strong	.	FCER2	19	.	NM_002002	exon11	c.G851A	p.R284Q	GCCAGCCGGTCGC	.	PASS	Atlas-SNP
UGT2A1	10941	hgsc.bcm.edu	37	4	70512773	70512773	+	Missense_Mutation	SNP	A	A	G	rs41292307	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	49	68	0	0.538462	0	A|0.882;G|0.118	0.118	strong	.	UGT2A1	131	.	NM_001252274	exon2	c.T590C	p.L197S	TCTGATAAAACAG	.	PASS	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	37	18	59774037	59774037	+	Silent	SNP	C	C	T	rs9319997	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	59	131	0	0.443609	0	C|0.912;T|0.088	0.088	strong	.	PIGN	62	.	NM_176787	exon19	c.G1752A	p.L584L	AGTCCACAGCCGA	.	PASS	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	37	11	5020799	5020799	+	Missense_Mutation	SNP	C	C	T	rs10768448	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	350	142	302	0	0.405714	0	C|0.707;T|0.293	0.293	strong	.	OR51L1	60	.	NM_001004755	exon1	c.C587T	p.T196I	CCAGGACCAACAG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1081757	1081757	+	Missense_Mutation	SNP	G	G	C	rs57737240	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	87	143	0	0.497143	0	G|0.707;C|0.293	0.293	strong	.	MUC2	614	.	NM_002457	exon13	c.G1685C	p.S562T	AGTCAAGCTGCCA	.	PASS	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35708425	35708425	+	Silent	SNP	T	T	C	rs35461988	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	20	61	0	0.416667	0	T|0.978;C|0.022	0.022	strong	.	TLN1	185	.	NM_006289	exon34	c.A4383G	p.L1461L	CTCCACTAGCCCT	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940474	144940474	+	Silent	SNP	C	C	T	rs56015972	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	8	147	0	0.0418848	0	C|0.500;T|0.500	0.500	weak	EPPK1,right_lower_lobe,carcinoma,-2,2	EPPK1	199	2	NM_031308	exon1	c.G6948A	p.G2316G	CTGCTGCCCGGTG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306918	1306918	+	Silent	SNP	C	C	T	rs74470113	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	618	216	404	0	0.349515	0	C|0.644;T|0.356	0.356	strong	TPSD1,pharynx,carcinoma,0,1	TPSD1	47	1	NM_012217	exon3	c.C375T	p.T125T	CCAGACCGGGGCG	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39579059	39579059	+	Nonsense_Mutation	SNP	G	G	A	rs78158550	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	21	82	0	0.318182	0	G|0.847;A|0.153	0.153	strong	.	KRT37	61	.	NM_003770	exon3	c.C703T	p.Q235X	AGAGCTGCTCCTC	.	PASS	Atlas-SNP
CRHR1	1394	hgsc.bcm.edu	37	17	43910507	43910507	+	Silent	SNP	C	C	T	rs16940674	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	68	0	1	0	C|0.860;T|0.140	0.140	strong	.	CRHR1	48	.	NM_001145146	exon10	c.C861T	p.C287C	TAGGTGCTGGTTT	.	PASS	Atlas-SNP
STARD7	56910	hgsc.bcm.edu	37	2	96859034	96859034	+	Silent	SNP	A	A	G	rs997547	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	91	240	0	0.393939	0	A|0.904;G|0.096	0.096	strong	STARD7,NS,carcinoma,0,1	STARD7	49	1	NM_020151	exon4	c.T606C	p.I202I	CCTCTCAATCACC	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	37	12	26648092	26648092	+	Silent	SNP	C	C	T	rs2230381	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	56	109	0	0.509091	0	C|0.868;T|0.132	0.132	strong	.	ITPR2	270	.	NM_002223	exon38	c.G5175A	p.Q1725Q	TCCCACCTGTGCA	.	PASS	Atlas-SNP
HLA-DPB1	3115	hgsc.bcm.edu	37	6	33048606	33048606	+	Missense_Mutation	SNP	G	G	C	rs1042133	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	20	69	0	0.425532	0	G|0.854;C|0.146	0.146	strong	.	HLA-DPB1	28	.	NM_002121	exon2	c.G258C	p.E86D	TGCGGAGTACTGG	.	PASS	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53205757	53205757	+	Missense_Mutation	SNP	T	T	C	rs7959052	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	287	140	280	1	0.487805	0.00357143	C|0.245;N|0.000	0.245	strong	.	KRT4	110	.	NM_002272	exon2	c.A467G	p.Q156R	AAGAACTGCACCT	.	PASS	Atlas-SNP
CUEDC2	79004	hgsc.bcm.edu	37	10	104184081	104184081	+	Silent	SNP	G	G	A	rs1044476	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	49	121	1	0.480392	0.00826446	G|0.898;A|0.102	0.102	strong	CUEDC2,NS,carcinoma,0,1	CUEDC2	22	1	NM_024040	exon5	c.C351T	p.P117P	CATTTCGGGCCGC	.	scavenged	Atlas-SNP
INPP5B	3633	hgsc.bcm.edu	37	1	38411445	38411445	+	Silent	SNP	G	G	A	rs871524	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	78	154	0	0.506494	0	G|0.734;A|0.266	0.266	strong	.	INPP5B	76	.	NM_005540	exon3	c.C135T	p.H45H	GCCGCCGTGCTCC	.	PASS	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	37	1	26673076	26673076	+	Missense_Mutation	SNP	G	G	A	rs11247924	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	44	59	0	0.517647	0	G|0.828;A|0.172	0.172	strong	.	AIM1L	98	.	NM_001039775	exon2	c.C73T	p.R25W	GGGGCCGCTGCCG	.	PASS	Atlas-SNP
CLEC12B	387837	hgsc.bcm.edu	37	12	10163379	10163379	+	Silent	SNP	C	C	T	rs1359083	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	25	73	0	0.337838	0	C|0.683;T|0.317	0.317	strong	.	CLEC12B	25	.	NM_001129998	exon1	c.C21T	p.Y7Y	GACCTACGCGACA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105413223	105413223	+	Silent	SNP	A	A	G	rs55797226	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	196	181	0	0.989899	0	A|0.492;G|0.508	0.508	strong	AHNAK2_ENST00000333244,colon,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.T8565C	p.D2855D	CTTAAGATCCCCT	.	PASS	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240981262	240981262	+	Missense_Mutation	SNP	A	A	C	rs6728493	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	55	0	1	0	A|0.620;C|0.380	0.380	strong	.	PRR21	53	.	NM_001080835	exon1	c.T1138G	p.S380A	TGTTAGAAACAAG	.	PASS	Atlas-SNP
WIPI2	26100	hgsc.bcm.edu	37	7	5257573	5257573	+	Silent	SNP	G	G	A	rs1134489	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	293	110	270	0	0.375427	0	G|0.927;A|0.073	0.073	strong	WIPI2,NS,carcinoma,+1,1	WIPI2	41	1	NM_015610	exon7	c.G597A	p.P199P	GATTCCGGCTCAC	.	PASS	Atlas-SNP
MYBBP1A	10514	hgsc.bcm.edu	37	17	4452638	4452638	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	19	30	0	0.542857	0	.	.	none	.	MYBBP1A	69	.	NM_014520	exon10	c.G1419A	p.E473E	CACCTGCTCAGTC	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133542545	133542545	+	Silent	SNP	G	G	A	rs10191147	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	49	88	0	0.521277	0	G|0.628;A|0.372	0.372	strong	.	NCKAP5	322	.	NM_207363	exon14	c.C1839T	p.S613S	CTCCACGGACTTA	.	PASS	Atlas-SNP
FUT5	2527	hgsc.bcm.edu	37	19	5867053	5867053	+	Silent	SNP	A	A	G	rs61730513	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	128	238	1	0.468864	0.00420168	A|0.872;G|0.128	0.128	strong	.	FUT5	29	.	NM_002034	exon2	c.T684C	p.A228A	GAGATGAGCCTGC	.	PASS	Atlas-SNP
MPC1	51660	hgsc.bcm.edu	37	6	166779464	166779464	+	Silent	SNP	G	G	A	rs12205572	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	25	44	0	0.454545	0	G|0.962;A|0.038	0.038	strong	.	.	.	.	NM_001270879	exon4	c.C174T	p.H58H	TTACTCGTGTTTG	.	PASS	Atlas-SNP
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32548550	32548550	+	Silent	SNP	G	G	A	rs1059362	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	428	231	473	1	0.53972	0.00211416	G|0.930;A|0.070	0.070	strong	.	HLA-DRB1	41	.	NM_002124	exon4	c.C736T	p.L246L	TGAACAGCCCGGC	.	PASS	Atlas-SNP
MFI2	4241	hgsc.bcm.edu	37	3	196746629	196746629	+	Silent	SNP	T	T	C	rs1056664	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	87	127	0	0.527273	0	T|0.742;C|0.258	0.258	strong	.	MFI2	88	.	NM_033316	exon7	c.A756G	p.E252E	GCCTTCTTCCTCC	.	PASS	Atlas-SNP
ILK	3611	hgsc.bcm.edu	37	11	6629665	6629665	+	Silent	SNP	C	C	T	rs1043388	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	77	106	0	0.52381	0	C|0.690;T|0.310	0.310	strong	.	ILK	41	.	NM_001014794	exon4	c.C297T	p.H99H	TGAACACGGGAAT	.	PASS	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	37	1	46499526	46499526	+	Missense_Mutation	SNP	A	A	G	rs1052607	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	118	221	0	0.519824	0	A|0.956;G|0.044	0.044	strong	.	MAST2	136	.	NM_015112	exon27	c.A3590G	p.K1197R	CCATTAAAGTGGG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105414810	105414810	+	Silent	SNP	C	C	G	rs10145032	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	194	206	0	1	0	C|0.495;G|0.505	0.505	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G6978C	p.L2326L	AAACGACAGCATC	.	PASS	Atlas-SNP
FUT6	2528	hgsc.bcm.edu	37	19	5831840	5831840	+	Missense_Mutation	SNP	C	C	T	rs17855739	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	303	124	351	0	0.409241	0	C|0.878;T|0.122	0.122	strong	FUT6,NS,carcinoma,+2,1	FUT6	30	1	NM_000150	exon3	c.G739A	p.E247K	AGTTCTCGAAGGC	.	PASS	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	37	10	52601702	52601702	+	Silent	SNP	A	A	G	rs141891504	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	32	75	0	0.415584	0	A|0.999;G|0.001	0.001	strong	.	A1CF	190	.	NM_001198820	exon6	c.T309C	p.N103N	TCCTCTATTGTTG	.	PASS	Atlas-SNP
CD1A	909	hgsc.bcm.edu	37	1	158225019	158225019	+	Missense_Mutation	SNP	C	C	G	rs2269715	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	87	159	0	0.568627	0	C|0.905;G|0.095	0.095	strong	.	CD1A	88	.	NM_001763	exon2	c.C204G	p.C68W	CCTGTGCCCCTGG	.	PASS	Atlas-SNP
APBA2	321	hgsc.bcm.edu	37	15	29390715	29390715	+	Missense_Mutation	SNP	C	C	T	rs371370074		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	27	70	0	0.402985	0	.	.	weak	.	APBA2	132	.	NM_005503	exon8	c.C1274T	p.T425M	CCCAGACGCTGAC	.	PASS	Atlas-SNP
CHCHD6	84303	hgsc.bcm.edu	37	3	126451937	126451937	+	Missense_Mutation	SNP	G	G	T	rs2272487	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	112	151	0	0.518519	0	G|0.788;T|0.212	0.212	strong	.	CHCHD6	18	.	NM_032343	exon4	c.G283T	p.A95S	GAGCATGCTGCTA	.	PASS	Atlas-SNP
KRT80	144501	hgsc.bcm.edu	37	12	52566047	52566047	+	Silent	SNP	G	G	A	rs3741736	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	87	0	0.473118	0	G|0.650;A|0.350	0.350	strong	.	KRT80	68	.	NM_182507	exon7	c.C1113T	p.N371N	CTTGACGTTCATC	.	PASS	Atlas-SNP
STOML1	9399	hgsc.bcm.edu	37	15	74277666	74277666	+	Silent	SNP	C	C	T	rs34353835	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	36	129	0	0.367347	0	C|0.980;T|0.020	0.020	strong	.	STOML1	22	.	NM_001256672	exon5	c.G783A	p.P261P	TGGCCCCGGGGAC	.	PASS	Atlas-SNP
TRAP1	10131	hgsc.bcm.edu	37	16	3721773	3721773	+	Missense_Mutation	SNP	G	G	C	rs1136948	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	17	42	0	0.5	0	G|0.864;C|0.136	0.136	strong	TRAP1,colon,carcinoma,-1,1	TRAP1	53	1	NM_016292	exon11	c.C1185G	p.D395E	GGGAATGTCCTCA	.	PASS	Atlas-SNP
DTNB	1838	hgsc.bcm.edu	37	2	25754393	25754393	+	Missense_Mutation	SNP	T	T	C	rs199811406	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	63	139	0	0.5	0	.	.	weak	.	DTNB	43	.	NM_021907	exon9	c.A950G	p.H317R	ACAGGATGCGGGG	.	PASS	Atlas-SNP
C15orf27	123591	hgsc.bcm.edu	37	15	76496340	76496340	+	Missense_Mutation	SNP	C	C	T	rs937733	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	28	55	0	0.528302	0	C|0.712;T|0.288	0.288	strong	.	C15orf27	32	.	NM_152335	exon11	c.C1280T	p.P427L	CTCCCCCGCCGCT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105408182	105408182	+	Missense_Mutation	SNP	T	T	G	rs9672139	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	140	132	0	1	0	T|0.501;G|0.499	0.499	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A13606C	p.M4536L	CGGGCATGTGGCC	.	PASS	Atlas-SNP
THUMPD3	25917	hgsc.bcm.edu	37	3	9425911	9425911	+	Silent	SNP	G	G	A	rs1129170	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	19	64	0	0.372549	0	G|0.425;A|0.575	0.575	strong	.	THUMPD3	46	.	NM_001114092	exon9	c.G1251A	p.K417K	CAAGAAGAGAAAC	.	PASS	Atlas-SNP
PAPL	0	hgsc.bcm.edu	37	19	39589191	39589191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	25	48	0	0.609756	0	.	.	none	.	.	.	.	NM_001004318	exon3	c.T215A	p.L72H	TGCCCCTCCGCGC	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7818313	7818313	+	Silent	SNP	C	C	T	rs73406609	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	78	63	0	1	0	C|0.741;T|0.259	0.259	strong	.	OR5P2	68	.	NM_153444	exon1	c.G177A	p.L59L	GTGGCTCAGAAAG	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274157	39274157	+	Silent	SNP	G	G	A	rs76095941		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	20	72	0	0.173913	0	G|0.500;A|0.500	0.500	weak	KRTAP4-11,NS,carcinoma,0,8	KRTAP4-11	94	8	NM_033059	exon1	c.C411T	p.P137P	GCAGCTGGGGTGG	.	PASS	Atlas-SNP
MDH1B	130752	hgsc.bcm.edu	37	2	207603221	207603221	+	Missense_Mutation	SNP	T	T	C	rs2287632	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	61	156	0	0.445255	0	T|0.898;C|0.102	0.102	strong	.	MDH1B	89	.	NM_001039845	exon12	c.A1543G	p.T515A	CCACGGTTTTGCC	.	PASS	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	37	11	68840397	68840397	+	Silent	SNP	T	T	C	rs1466221	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	63	107	0	1	0	T|0.561;C|0.439	0.439	strong	TPCN2,NS,carcinoma,0,1	TPCN2	63	1	NM_139075	exon13	c.T1158C	p.Y386Y	TTCCTATGGCAGT	.	PASS	Atlas-SNP
FSD1	79187	hgsc.bcm.edu	37	19	4322990	4322990	+	Silent	SNP	G	G	A	rs67511110	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	34	70	0	0.435897	0	G|0.924;A|0.076	0.076	strong	.	FSD1	51	.	NM_024333	exon11	c.G1047A	p.T349T	GGACACGCTGATC	.	PASS	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	37	15	29421014	29421014	+	Silent	SNP	G	G	C	rs2306934	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	30	64	0	0.422535	0	G|0.869;C|0.131	0.131	strong	.	FAM189A1	20	.	NM_015307	exon8	c.C981G	p.T327T	AGCACTGGTGTTT	.	PASS	Atlas-SNP
CCNB2	9133	hgsc.bcm.edu	37	15	59408904	59408904	+	Missense_Mutation	SNP	C	C	T	rs369137460		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	4	159	0	0.0242424	0	.	.	weak	CCNB2,NS,carcinoma,0,1	CCNB2	23	1	NM_004701	exon6	c.C613T	p.R205W	GTTTCCCGGAAGA	.	scavenged	Atlas-SNP
MOS	4342	hgsc.bcm.edu	37	8	57025762	57025762	+	Silent	SNP	G	G	T	rs55969078	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	51	111	0	0.455357	0	G|0.967;T|0.033	0.033	strong	MOS,NS,carcinoma,-1,1	MOS	63	1	NM_005372	exon1	c.C780A	p.A260A	AATGTCGGCTTTA	.	PASS	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	37	21	43985958	43985958	+	Missense_Mutation	SNP	A	A	T	rs117821416	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	39	63	0	0.481481	0	A|0.994;T|0.006	0.006	strong	.	SLC37A1	48	.	NM_018964	exon16	c.A1243T	p.S415C	ACCGTCAGCAAGA	.	PASS	Atlas-SNP
FAM13B	51306	hgsc.bcm.edu	37	5	137354665	137354665	+	Missense_Mutation	SNP	C	C	T	rs79543971	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	82	159	0	0.535948	0	C|0.999;T|0.001	0.001	strong	.	FAM13B	46	.	NM_001101800	exon3	c.G136A	p.V46M	AGTCCACAACGTG	.	PASS	Atlas-SNP
CEP57	9702	hgsc.bcm.edu	37	11	95555088	95555088	+	Silent	SNP	G	G	A	rs11742	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	55	121	0	0.474138	0	G|0.967;A|0.033	0.033	strong	CEP57,NS,carcinoma,+1,1	CEP57	40	1	NM_001243777	exon7	c.G753A	p.P251P	AACTCCGTGTGTT	.	PASS	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	37	14	104394850	104394850	+	Silent	SNP	C	C	T	rs9324066	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	34	47	0	0.5	0	A|0.000;C|0.519;G|0.000;T|0.480	0.480	strong	TDRD9_ENST00000409874,colon,carcinoma,0,1	TDRD9	175	1	NM_153046	exon1	c.C4T	p.L2L	AGGATGCTGCGGA	.	PASS	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	37	1	207857254	207857254	+	Missense_Mutation	SNP	A	A	G	rs3085	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	51	169	0	0.447368	0	A|0.852;G|0.148	0.148	strong	.	CR1L	97	.	NM_175710	exon4	c.A415G	p.I139V	TGCATCATCTCAG	.	PASS	Atlas-SNP
CD8A	925	hgsc.bcm.edu	37	2	87017575	87017575	+	Silent	SNP	C	C	T	rs2229240	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	52	121	0	0.468468	0	C|0.931;T|0.069	0.069	strong	.	CD8A	28	.	NM_001145873	exon5	c.G279A	p.R93R	CCCCAACCTCTTG	.	PASS	Atlas-SNP
CACNG6	59285	hgsc.bcm.edu	37	19	54501527	54501527	+	Silent	SNP	G	G	A	rs34604090	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	32	58	0	0.477612	0	G|0.899;A|0.101	0.101	strong	CACNG6,colon,carcinoma,0,1	CACNG6	42	1	NM_145815	exon2	c.G366A	p.T122T	CACCACGGGGGAG	.	PASS	Atlas-SNP
SIRPD	128646	hgsc.bcm.edu	37	20	1538266	1538266	+	Silent	SNP	G	G	A	rs11697395	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	42	107	0	0.42	0	G|0.853;A|0.147	0.147	strong	.	SIRPD	34	.	NM_178460	exon1	c.C34T	p.L12L	AAGGCAGAGGTGG	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1268494	1268494	+	Silent	SNP	C	C	T	rs2745136	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	35	28	0	1	0	C|0.275;G|0.000;T|0.724	0.724	strong	CACNA1H_ENST00000358590,NS,carcinoma,0,2	CACNA1H	317	2	NM_021098	exon33	c.C5730T	p.D1910D	CAGGGACGCCCCA	.	PASS	Atlas-SNP
TNNT3	7140	hgsc.bcm.edu	37	11	1959707	1959707	+	Silent	SNP	C	C	T	rs4727	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	90	146	0	0.48913	0	C|0.866;T|0.134	0.134	strong	TNNT3_ENST00000381589,NS,carcinoma,+2,2	TNNT3	68	2	NM_006757	exon16	c.C762T	p.G254G	AGTCGGCGGGCGC	.	PASS	Atlas-SNP
ARAP1	116985	hgsc.bcm.edu	37	11	72408055	72408055	+	Missense_Mutation	SNP	G	G	C	rs56200889	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	43	0	0.464286	0	G|0.788;C|0.212	0.212	strong	ARAP1_ENST00000393609,NS,carcinoma,0,2	ARAP1	168	2	NM_001040118	exon22	c.C3139G	p.Q1047E	GGCGCTGGGCGCG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280736	152280736	+	Missense_Mutation	SNP	T	T	C	rs78974621	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	529	90	329	0	0.170132	0	T|0.865;C|0.135	0.135	strong	.	FLG	900	.	NM_002016	exon3	c.A6626G	p.H2209R	TGATGATGCGACC	.	PASS	Atlas-SNP
OR6A2	8590	hgsc.bcm.edu	37	11	6816792	6816792	+	Missense_Mutation	SNP	T	T	C	rs61741824	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	80	163	0	0.412371	0	T|0.981;C|0.019	0.019	strong	.	OR6A2	68	.	NM_003696	exon1	c.A148G	p.I50V	TCCTAATTGCCAT	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24416133	24416133	+	Silent	SNP	C	C	T	rs4276859	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	55	124	0	0.514019	0	C|0.855;T|0.145	0.145	strong	MYOM3,caecum,carcinoma,0,1	MYOM3	131	1	NM_152372	exon14	c.G1509A	p.P503P	GGTTGGCGGTGAG	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84606956	84606956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	3	259	0	0.0113636	0	.	.	none	FAM75D4,NS,carcinoma,0,4	.	.	4	NM_001001670	exon4	c.G1571A	p.G524D	AACGTGGCCATTC	.	scavenged	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	37	5	179072006	179072006	+	Silent	SNP	A	A	G	rs13153811	by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	35	184	0	0.180412	0	.	.	weak	C5orf60,NS,carcinoma,0,1	C5orf60	24	1	NM_001142306	exon1	c.T16C	p.L6L	CAGGCAACTGAGC	.	PASS	Atlas-SNP
FCRL6	343413	hgsc.bcm.edu	37	1	159778910	159778910	+	Missense_Mutation	SNP	G	G	A	rs72700615	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	68	144	0	0.523077	0	G|0.901;A|0.099	0.099	strong	.	FCRL6	61	.	NM_001004310	exon4	c.G479A	p.G160D	ACAGGGGCCCTCA	.	PASS	Atlas-SNP
ZNF682	91120	hgsc.bcm.edu	37	19	20116963	20116963	+	Missense_Mutation	SNP	C	C	T	rs17679334	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	29	57	0	0.414286	0	C|0.804;T|0.196	0.196	strong	.	ZNF682	51	.	NM_033196	exon4	c.G1348A	p.V450I	GTTTGACGGCAGT	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113395826	113395826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	102	173	0	0.51	0	.	.	none	.	CSMD3	2325	.	NM_198123	exon37	c.A6001G	p.N2001D	CATTGTTGTCTCC	.	PASS	Atlas-SNP
MAGI3	260425	hgsc.bcm.edu	37	1	114196495	114196495	+	Silent	SNP	A	A	G	rs2359173	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	93	98	0	0.958763	0	A|0.804;G|0.196	0.196	strong	.	MAGI3	181	.	NM_152900	exon15	c.A2484G	p.T828T	TTCAACACAGAAT	.	PASS	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	37	9	5065003	5065003	+	Missense_Mutation	SNP	C	C	G	rs2230723	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	26	63	0	0.356164	0	C|0.986;G|0.014	0.014	strong	.	JAK2	35466	.	NM_004972	exon9	c.C1177G	p.L393V	GCCGTGCTTGAAA	.	PASS	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	37	11	117309603	117309603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	21	68	0	0.538462	0	.	.	none	.	DSCAML1	286	.	NM_020693	exon24	c.G4421A	p.R1474Q	TCACCTCGGATGG	.	PASS	Atlas-SNP
PML	5371	hgsc.bcm.edu	37	15	74328141	74328141	+	Missense_Mutation	SNP	G	G	T	rs743581	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	29	64	0	0.453125	0	A|0.000;G|0.653;T|0.347	0.347	strong	.	PML	169	.	NM_033239	exon8	c.G2339T	p.G780V	GAGCAGGTGTTCC	.	PASS	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	37	3	194373832	194373832	+	Missense_Mutation	SNP	T	T	C	rs1675953	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	249	127	235	1	0.51004	0.00425532	T|0.413;C|0.587	0.587	strong	.	LSG1	38	.	NM_018385	exon8	c.A799G	p.K267E	CAAACTTGGTTGT	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1103873	1103873	+	Silent	SNP	C	C	T	rs11245957	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	40	93	0	0.449438	0	C|0.867;T|0.133	0.133	strong	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2	614	1	NM_002457	exon49	c.C8160T	p.Y2720Y	TTCGTACGCCGGC	.	PASS	Atlas-SNP
AASDH	132949	hgsc.bcm.edu	37	4	57204777	57204777	+	Missense_Mutation	SNP	A	A	C	rs8340	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	119	258	0	0.485714	0	C|0.176;N|0.000	0.176	strong	AASDH,NS,carcinoma,0,1	AASDH	101	1	NM_181806	exon15	c.T3088G	p.Y1030D	CATTGTAGTTATG	.	PASS	Atlas-SNP
ONECUT2	9480	hgsc.bcm.edu	37	18	55143766	55143766	+	Silent	SNP	C	C	T	rs3745074	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	63	127	0	0.488372	0	C|0.638;T|0.362	0.362	strong	ONECUT2,NS,carcinoma,+1,1	ONECUT2	42	1	NM_004852	exon2	c.C1326T	p.F442F	ACTCTTCGCCATC	.	PASS	Atlas-SNP
XRCC4	7518	hgsc.bcm.edu	37	5	82648977	82648977	+	Silent	SNP	T	T	G	rs1056503	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	127	285	0	0.472119	0	T|0.685;G|0.315	0.315	strong	.	XRCC4	37	.	NM_022406	exon8	c.T927G	p.S309S	GACGTCTAAAAAG	.	PASS	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	37	3	100976502	100976502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	2	118	0	0.0166667	0	.	.	none	IMPG2,colon,carcinoma,+2,1	IMPG2	164	1	NM_016247	exon10	c.G1024A	p.D342N	TATCATCCAGTTC	.	scavenged	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	37	14	95884323	95884323	+	Missense_Mutation	SNP	G	G	A	rs12434757	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	77	90	0	0.950617	0	G|0.410;A|0.590	0.590	strong	SYNE3_ENST00000334258,NS,carcinoma,0,6	SYNE3	130	6	NM_152592	exon17	c.C2768T	p.A923V	CAGCACGCCCTCC	.	PASS	Atlas-SNP
ZKSCAN1	7586	hgsc.bcm.edu	37	7	99627504	99627504	+	Missense_Mutation	SNP	C	C	G	rs148669042	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	61	151	0	0.442029	0	C|0.994;G|0.006	0.006	strong	.	ZKSCAN1	59	.	NM_003439	exon4	c.C601G	p.P201A	CACATTCCTGCAC	.	PASS	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	37	2	210559960	210559960	+	Silent	SNP	G	G	T	rs2239672	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	53	102	0	0.441667	0	G|0.883;T|0.117	0.117	strong	.	MAP2	372	.	NM_002374	exon7	c.G3066T	p.V1022V	TTCAGTGCCAGAG	.	PASS	Atlas-SNP
APIP	51074	hgsc.bcm.edu	37	11	34916657	34916657	+	Missense_Mutation	SNP	C	C	T	rs61734605	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	89	0	1	0	C|0.778;T|0.222	0.222	strong	.	APIP	21	.	NM_015957	exon2	c.G58A	p.D20N	CCTTGTCCTTAAA	.	PASS	Atlas-SNP
COX10	1352	hgsc.bcm.edu	37	17	13972955	13972955	+	Silent	SNP	C	C	T	rs8076787	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	63	115	0	0.45	0	C|0.957;T|0.043	0.043	strong	.	COX10	36	.	NM_001303	exon1	c.C33T	p.R11R	CTCACGCCTCCTG	.	PASS	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	37	5	110439509	110439509	+	Missense_Mutation	SNP	A	A	G	rs11241095	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	115	184	0	0.547619	0	A|0.756;G|0.243	0.243	strong	.	WDR36	111	.	NM_139281	exon7	c.A790G	p.I264V	GTTGCTATTGGTC	.	PASS	Atlas-SNP
ARMC4	55130	hgsc.bcm.edu	37	10	28257852	28257852	+	Missense_Mutation	SNP	C	C	T	rs7920186	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	830	207	787	1	0.249398	0.00127065	C|0.500;T|0.500	0.500	weak	ARMC4,rectum,NS,-1,1	ARMC4	177	1	NM_018076	exon9	c.G1238A	p.R413Q	ACATACCGAAGTA	.	scavenged	Atlas-SNP
PHYHD1	254295	hgsc.bcm.edu	37	9	131702891	131702891	+	Missense_Mutation	SNP	A	A	G	rs2273866	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	101	69	1	1	0.0144928	A|0.643;G|0.357	0.357	strong	PHYHD1,NS,carcinoma,0,1	PHYHD1	29	1	NM_174933	exon10	c.A578G	p.E193G	GTCAAGAAGGATG	.	scavenged	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	37	1	171751236	171751236	+	Silent	SNP	T	T	C	rs2294720	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	32	51	0	0.5	0	T|0.439;C|0.561	0.561	strong	METTL13,NS,carcinoma,0,1	METTL13	67	1	NM_015935	exon1	c.T129C	p.H43H	GCTACATAAATAT	.	PASS	Atlas-SNP
FAM211A	388341	hgsc.bcm.edu	37	17	16346932	16346932	+	Silent	SNP	G	G	T	rs4792745	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	35	88	0	0.380435	0	G|0.691;T|0.309	0.309	strong	.	FAM211A	21	.	NM_001113567	exon4	c.C1005A	p.G335G	CTCCTTGCCCTCA	.	PASS	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	37	15	41819367	41819367	+	Missense_Mutation	SNP	T	T	C	rs11630901	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	67	119	0	0.51145	0	T|0.886;C|0.114	0.114	strong	RPAP1,colon,carcinoma,0,1	RPAP1	111	1	NM_015540	exon13	c.A1744G	p.R582G	TCACCCTTGTGGC	.	PASS	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	37	14	68257485	68257485	+	Silent	SNP	C	C	T	rs7143196	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	78	131	0	0.506494	0	C|0.874;T|0.126	0.126	strong	.	ZFYVE26	223	.	NM_015346	exon15	c.G2559A	p.L853L	CGTGAACAGCACC	.	PASS	Atlas-SNP
DNAJC27	51277	hgsc.bcm.edu	37	2	25194741	25194741	+	Silent	SNP	G	G	A	rs7593864	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	17	48	0	0.386364	0	G|0.256;A|0.744	0.744	strong	DNAJC27_ENST00000264711,NS,carcinoma,0,1	DNAJC27	37	1	NM_016544	exon1	c.C33T	p.P11P	CCTGCCGGGCTCC	.	PASS	Atlas-SNP
C21orf2	755	hgsc.bcm.edu	37	21	45750346	45750346	+	Silent	SNP	C	C	A	rs2070573	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	19	35	0	0.527778	0	C|0.728;A|0.272	0.272	strong	.	C21orf2	10	.	NM_001271441	exon6	c.G999T	p.P333P	ACTGACCGGCACA	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202733178	202733178	+	Silent	SNP	A	A	G	rs61749325	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	19	48	0	0.422222	0	A|0.978;G|0.022	0.022	strong	.	KDM5B	166	.	NM_006618	exon6	c.T807C	p.N269N	CTTACCATTTTCA	.	PASS	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145114924	145114924	+	Silent	SNP	G	G	C	rs7003860	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	39	49	0	0.541667	0	G|0.894;C|0.106	0.106	strong	.	OPLAH	78	.	NM_017570	exon2	c.C12G	p.P4P	GCCCTCGGGGCTG	.	PASS	Atlas-SNP
TTC23	64927	hgsc.bcm.edu	37	15	99762052	99762052	+	Silent	SNP	A	A	G	rs76007555	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	49	89	0	0.563218	0	A|0.932;G|0.068	0.068	strong	.	TTC23	33	.	NM_001040657	exon4	c.T198C	p.H66H	AAGCTCATGGACG	.	PASS	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	37	5	256455	256455	+	Missense_Mutation	SNP	C	C	G	rs1126697	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	3	116	0	0.0223881	0	C|0.998;G|0.002	0.002	weak	SDHA,NS,adenocarcinoma,0,1	SDHA	80	1	NM_004168	exon15	c.C1915G	p.L639V	GTCACTCTGGAAT	.	scavenged	Atlas-SNP
WDR27	253769	hgsc.bcm.edu	37	6	170070723	170070723	+	Missense_Mutation	SNP	A	A	G	rs4236176	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	42	59	0	0.531646	0	A|0.485;G|0.515	0.515	strong	.	WDR27	129	.	NM_182552	exon4	c.T398C	p.L133P	TCATCCAGGCTCA	.	PASS	Atlas-SNP
CDON	50937	hgsc.bcm.edu	37	11	125871735	125871735	+	Silent	SNP	C	C	T	rs516664	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	69	155	0	0.46	0	C|0.667;T|0.333	0.333	strong	CDON,NS,carcinoma,0,2	CDON	137	2	NM_016952	exon11	c.G2037A	p.A679A	TGATGACGCTGTT	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216258194	216258194	+	Silent	SNP	G	G	T	rs56110889	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	61	107	0	0.472868	0	G|0.844;T|0.156	0.156	strong	.	USH2A	1168	.	NM_206933	exon25	c.C5013A	p.G1671G	GAGACAGCCCACA	.	PASS	Atlas-SNP
GTF2H4	2968	hgsc.bcm.edu	37	6	30877760	30877760	+	Silent	SNP	A	A	C	rs1419693	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	112	121	1	1	0.00826446	A|0.740;C|0.260	0.260	strong	.	GTF2H4	38	.	NM_001517	exon4	c.A294C	p.T98T	GCACACACAGCTG	.	PASS	Atlas-SNP
TMEM200A	114801	hgsc.bcm.edu	37	6	130761804	130761804	+	Silent	SNP	C	C	T	rs12200105	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	68	121	0	0.535433	0	C|0.743;T|0.257	0.257	strong	.	TMEM200A	108	.	NM_001258277	exon3	c.C237T	p.A79A	TATGGCCGTTCTT	.	PASS	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	37	3	121100283	121100283	+	Missense_Mutation	SNP	G	G	A	rs17740066	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	102	167	0	0.497561	0	G|0.930;A|0.070	0.070	strong	.	STXBP5L	159	.	NM_014980	exon23	c.G2563A	p.V855I	CTGTTCGTTGGAA	.	PASS	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	37	19	8203392	8203392	+	Missense_Mutation	SNP	G	G	C	rs61729623	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	37	99	0	0.468354	0	G|0.983;C|0.017	0.017	strong	.	FBN3	300	.	NM_032447	exon8	c.C922G	p.L308V	CGGCGAGGTCTCC	.	PASS	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	37	12	14577524	14577524	+	Silent	SNP	C	C	T	rs146972131		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	280	135	270	1	0.482143	0.0037037	C|1.000;T|0.000	0.000	weak	.	ATF7IP	136	.	NM_018179	exon2	c.C675T	p.A225A	TTGTGCCGCTGAT	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371502	240371502	+	Silent	SNP	C	C	T	rs200984130		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	6	71	0	0.0731707	0	C|0.999;T|0.001	0.001	weak	.	FMN2	451	.	NM_020066	exon5	c.C3390T	p.P1130P	CATACCCCCTCCT	.	PASS	Atlas-SNP
CSF1	1435	hgsc.bcm.edu	37	1	110466338	110466338	+	Silent	SNP	C	C	A	rs333970	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	127	127	0	0.992188	0	C|0.554;A|0.446	0.446	strong	.	CSF1	40	.	NM_000757	exon6	c.C1095A	p.T365T	TGGTACCGCCTTG	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244197	244197	+	Silent	SNP	T	T	C	rs1128322	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	116	0	1	0	T|0.198;C|0.802	0.802	strong	.	PSMD13	53	.	NM_175932	exon2	c.T252C	p.H84H	TCTTCATGTAGTT	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364493	5364493	+	Missense_Mutation	SNP	T	T	C	rs57900141	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	30	42	0	0.46875	0	T|0.879;C|0.121	0.121	strong	.	OR51B5	60	.	NM_001005567	exon5	c.A262G	p.R88G	TCTCCCTGTGATC	.	PASS	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	37	15	65957717	65957717	+	Silent	SNP	C	C	G	rs61751113	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	69	121	0	0.560976	0	C|0.991;G|0.009	0.009	strong	.	DENND4A	217	.	NM_001144823	exon30	c.G5322C	p.P1774P	CTGTCCCGGATCC	.	PASS	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	37	9	140077639	140077639	+	Silent	SNP	G	G	A	rs11549105	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	84	135	0	0.556291	0	G|0.835;A|0.165	0.165	strong	ANAPC2,caecum,carcinoma,-2,1	ANAPC2	57	1	NM_013366	exon6	c.C1224T	p.R408R	CAGCACGCGCAGC	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78261805	78261805	+	Silent	SNP	A	A	G	rs7215243	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	13	57	1	0.333333	0.0175439	A|0.731;G|0.269	0.269	strong	RNF213_ENST00000456466,NS,carcinoma,0,3	RNF213	766	3	NM_001256071	exon4	c.A453G	p.P151P	GCCCCCAGGCACA	.	scavenged	Atlas-SNP
MSANTD1	345222	hgsc.bcm.edu	37	4	3257593	3257593	+	Silent	SNP	C	C	T	rs362287	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	8	10	0	0.666667	0	C|0.700;T|0.300	0.300	strong	.	MSANTD1	14	.	NM_001042690	exon3	c.C738T	p.R246R	GCGCCGCGTGCTG	.	PASS	Atlas-SNP
RMDN1	51115	hgsc.bcm.edu	37	8	87519315	87519315	+	Missense_Mutation	SNP	T	T	G	rs6980476	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	32	73	0	0.376471	0	T|0.790;G|0.210	0.210	strong	.	.	.	.	NM_016033	exon2	c.A156C	p.K52N	GCCTCTTTTGAAA	.	PASS	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11511457	11511457	+	Silent	SNP	C	C	T	rs11078022	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	89	92	0	1	0	C|0.626;N|0.000	.	strong	.	DNAH9	695	.	NM_001372	exon2	c.C429T	p.P143P	TCTACCCGTCCTG	.	PASS	Atlas-SNP
OR3A2	4995	hgsc.bcm.edu	37	17	3181384	3181384	+	Silent	SNP	C	C	T	rs769434	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	72	117	0	0.529412	0	C|0.838;T|0.162	0.162	strong	.	OR3A2	36	.	NM_002551	exon1	c.G846A	p.G282G	TCCAACCCCTTTA	.	PASS	Atlas-SNP
POLR2D	5433	hgsc.bcm.edu	37	2	128608184	128608184	+	Silent	SNP	C	C	T	rs11556864	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	112	262	1	0.468619	0.00381679	C|0.907;T|0.093	0.093	strong	.	POLR2D	13	.	NM_004805	exon3	c.G330A	p.E110E	CTTGGACTCCTCA	.	PASS	Atlas-SNP
CTDSP1	58190	hgsc.bcm.edu	37	2	219267781	219267781	+	Silent	SNP	C	C	T	rs2227255	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	106	184	1	0.488479	0.00543478	C|0.533;T|0.467	0.467	strong	CTDSP1,colon,carcinoma,0,1	CTDSP1	19	1	NM_021198	exon5	c.C402T	p.H134H	TCCTCACGTGGAT	.	scavenged	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169637847	169637847	+	Silent	SNP	G	G	A	rs35631991	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	64	100	0	0.581818	0	G|0.975;A|0.025	0.025	strong	.	THBS2	230	.	NM_003247	exon9	c.C1173T	p.T391T	GCACTGGGTCCAC	.	PASS	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93606309	93606309	+	Silent	SNP	G	G	A	rs35758162	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	43	84	0	0.472527	0	G|0.847;A|0.153	0.153	strong	.	SYK	132	.	NM_003177	exon2	c.G129A	p.Q43Q	GCGCCAGAGCCGC	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305820	39305820	+	Missense_Mutation	SNP	C	C	T	rs238830	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	25	95	0	0.308642	0	C|0.952;T|0.048	0.048	strong	.	KRTAP4-5	34	.	NM_033188	exon1	c.G200A	p.R67H	TAGGGGCGGCAGC	.	PASS	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	37	1	3328659	3328659	+	Missense_Mutation	SNP	C	C	T	rs2493292	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	29	66	0	0.517857	0	C|0.868;T|0.132	0.132	strong	.	PRDM16	147	.	NM_022114	exon9	c.C1898T	p.P633L	GCGACCCTGACAA	.	PASS	Atlas-SNP
KLHDC8A	55220	hgsc.bcm.edu	37	1	205308335	205308335	+	Silent	SNP	G	G	A	rs1105385	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	27	40	0	0.490909	0	A|0.232;C|0.004	0.232	strong	.	KLHDC8A	31	.	NM_018203	exon4	c.C744T	p.F248F	CATGTCGAACACG	.	PASS	Atlas-SNP
COL13A1	1305	hgsc.bcm.edu	37	10	71640267	71640267	+	Silent	SNP	C	C	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	63	115	0	0.459854	0	.	.	none	COL13A1_ENST00000398978,NS,carcinoma,0,1	COL13A1	133	1	NM_080802	exon6	c.C444A	p.P148P	GTCCCCCGGAGAC	.	PASS	Atlas-SNP
VPS51	738	hgsc.bcm.edu	37	11	64877197	64877197	+	Silent	SNP	C	C	T	rs61736623	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	55	115	0	0.5	0	C|0.974;T|0.026	0.026	strong	.	.	.	.	NM_013265	exon7	c.C1680T	p.P560P	GACGCCCGTGAGC	.	PASS	Atlas-SNP
CBX8	57332	hgsc.bcm.edu	37	17	77768654	77768654	+	Missense_Mutation	SNP	C	C	A	rs4889891	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	28	53	0	0.4375	0	C|0.433;A|0.567	0.567	strong	CBX8,colon,carcinoma,-1,3	CBX8	42	3	NM_020649	exon5	c.G950T	p.G317V	CCCCCCCCAGAGC	.	PASS	Atlas-SNP
USP5	8078	hgsc.bcm.edu	37	12	6965194	6965194	+	Silent	SNP	A	A	G	rs2226955	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	67	153	0	0.449664	0	A|0.527;G|0.473	0.473	strong	.	USP5	124	.	NM_003481	exon4	c.A318G	p.G106G	AGGCGGATTTGAC	.	PASS	Atlas-SNP
SGPL1	8879	hgsc.bcm.edu	37	10	72604263	72604263	+	Missense_Mutation	SNP	G	G	T	rs12770335	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	37	57	0	0.41573	0	G|0.913;T|0.087	0.087	strong	.	SGPL1	37	.	NM_003901	exon3	c.G61T	p.V21L	TTGGAAGTATACT	.	PASS	Atlas-SNP
MRPL38	64978	hgsc.bcm.edu	37	17	73900688	73900688	+	Silent	SNP	T	T	C	rs3744015	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	16	33	0	0.372093	0	T|0.523;C|0.477	0.477	strong	.	MRPL38	26	.	NM_032478	exon2	c.A180G	p.R60R	CTCTGCTCGGCGC	.	PASS	Atlas-SNP
PRPF31	26121	hgsc.bcm.edu	37	19	54627915	54627915	+	Silent	SNP	C	C	T	rs11556769	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	30	65	0	0.461538	0	C|0.925;T|0.075	0.075	strong	.	PRPF31	48	.	NM_015629	exon8	c.C735T	p.P245P	GATGCCCGCCTGC	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17088006	17088006	+	Silent	SNP	T	T	C	rs1801228	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	47	128	0	0.456311	0	T|0.968;C|0.032	0.032	strong	.	CUBN	515	.	NM_001081	exon24	c.A3417G	p.L1139L	TAACCATAGTTTG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152286032	152286032	+	Missense_Mutation	SNP	C	C	T	rs11588170	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	337	179	260	1	0.531157	0.00384615	C|0.839;T|0.161	0.161	strong	.	FLG	900	.	NM_002016	exon3	c.G1330A	p.G444R	TCAGCCCAGCCTT	.	PASS	Atlas-SNP
CSNK1D	1453	hgsc.bcm.edu	37	17	80209282	80209282	+	Silent	SNP	G	G	A	rs56181605	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	40	90	0	0.555556	0	G|0.990;A|0.010	0.010	strong	.	CSNK1D	118	.	NM_001893	exon6	c.C858T	p.Y286Y	GAACACGTAGTCA	.	PASS	Atlas-SNP
TTC22	55001	hgsc.bcm.edu	37	1	55248074	55248074	+	Missense_Mutation	SNP	A	A	G	rs12144325	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	26	80	0	0.448276	0	A|0.925;G|0.075	0.075	strong	.	TTC22	40	.	NM_001114108	exon6	c.T1097C	p.L366P	CAGGCCAGGTGGT	.	PASS	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	37	19	41009982	41009982	+	Silent	SNP	C	C	T	rs71358911	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	102	239	0	0.557377	0	C|0.938;T|0.062	0.062	strong	.	SPTBN4	213	.	NM_020971	exon12	c.C1608T	p.A536A	CCTTGCCCTGCAG	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1268596	1268596	+	Silent	SNP	C	C	T	rs372529098		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	45	97	0	0.436893	0	.	.	weak	.	CACNA1H	317	.	NM_021098	exon33	c.C5832T	p.H1944H	GCCCCACCCCCGC	.	PASS	Atlas-SNP
AMACR	23600	hgsc.bcm.edu	37	5	33998768	33998768	+	Missense_Mutation	SNP	C	C	A	rs34677	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	89	188	0	0.458763	0	T|0.007;G|0.005	.	strong	AMACR,NS,carcinoma,0,1	AMACR	38	1	NM_014324	exon4	c.G717T	p.Q239H	GTAGAACTGGGGT	.	PASS	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	37	11	63064887	63064887	+	Missense_Mutation	SNP	G	G	T	rs117447942	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	70	172	0	0.492958	0	G|0.976;T|0.024	0.024	strong	SLC22A10,NS,carcinoma,0,1	SLC22A10	79	1	NM_001039752	exon3	c.G619T	p.G207C	TTGGCAGGTTTTT	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10470068	10470068	+	Missense_Mutation	SNP	C	C	T	rs74990397	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	29	21	0	1	0	C|0.632;T|0.368	0.368	strong	RP1L1,NS,haematopoietic_neoplasm,0,1	RP1L1	453	1	NM_178857	exon4	c.G1540A	p.G514S	CTGGGCCGCCCAG	.	PASS	Atlas-SNP
SSTR1	6751	hgsc.bcm.edu	37	14	38679473	38679473	+	Silent	SNP	C	C	T	rs2228497	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	55	89	0	0.52381	0	C|0.772;T|0.228	0.228	strong	.	SSTR1	66	.	NM_001049	exon3	c.C879T	p.V293V	GCTGGTCAACGTG	.	PASS	Atlas-SNP
TRIM56	81844	hgsc.bcm.edu	37	7	100731829	100731829	+	Silent	SNP	T	T	C	rs6948536	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	38	30	0	1	0	T|0.261;C|0.739	0.739	strong	TRIM56_ENST00000306085,rectum,carcinoma,0,2	TRIM56	123	2	NM_030961	exon3	c.T1236C	p.A412A	CCAGGCTGGAGAT	.	PASS	Atlas-SNP
RMND1	55005	hgsc.bcm.edu	37	6	151766500	151766500	+	Silent	SNP	T	T	C	rs61739876	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	57	119	0	0.471074	0	T|0.910;C|0.090	0.090	strong	.	RMND1	32	.	NM_017909	exon2	c.A447G	p.K149K	GGATGCTTTTAGT	.	PASS	Atlas-SNP
VCX3B	425054	hgsc.bcm.edu	37	X	8434367	8434367	+	Silent	SNP	C	C	T	rs139169782	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	426	410	59	0	0.962441	0	C|0.777;T|0.223	0.223	strong	.	VCX3B	34	.	NM_001001888	exon3	c.C684T	p.S228S	GGAGAGCGAGATG	.	PASS	Atlas-SNP
ALK	238	hgsc.bcm.edu	37	2	29543699	29543699	+	Silent	SNP	G	G	A	rs56165377	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	85	136	0	0.57047	0	G|0.995;A|0.005	0.005	strong	.	ALK	533	.	NM_004304	exon7	c.C1464T	p.G488G	GGTCCAGCCACAG	.	PASS	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	37	15	22369343	22369343	+	Silent	SNP	C	C	T	rs11259845	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	333	117	339	1	0.351351	0.00294985	C|0.971;T|0.029	0.029	strong	.	OR4M2	140	.	NM_001004719	exon1	c.C768T	p.S256S	GCCATCCATCTAC	.	PASS	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	37	15	79749261	79749261	+	Missense_Mutation	SNP	A	A	C	rs79982509	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	67	159	0	0.482014	0	A|0.965;C|0.035	0.035	strong	.	KIAA1024	146	.	NM_015206	exon2	c.A772C	p.N258H	AAAAGGAATATCT	.	PASS	Atlas-SNP
EPCAM	4072	hgsc.bcm.edu	37	2	47601106	47601106	+	Missense_Mutation	SNP	T	T	C	rs1126497	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	51	78	0	0.542553	0	T|0.385;C|0.615	0.615	strong	.	EPCAM	27	.	NM_002354	exon3	c.T344C	p.M115T	CCTCCATGTGCTG	.	PASS	Atlas-SNP
CYP2D6	1565	hgsc.bcm.edu	37	22	42523528	42523528	+	Missense_Mutation	SNP	C	C	T	rs1058172	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	265	45	194	0	0.169811	0	C|0.908;T|0.092	0.092	strong	CYP2D6_ENST00000360608,NS,carcinoma,0,2	CYP2D6	104	2	NM_000106	exon7	c.G1094A	p.R365H	CCAAAGCGCTGCA	.	PASS	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	37	9	101151234	101151234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	118	284	1	0.432234	0.00352113	.	.	none	.	GABBR2	126	.	NM_005458	exon10	c.C1431G	p.I477M	TAGGGAGATCTTC	.	PASS	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	37	11	33604960	33604960	+	Silent	SNP	C	C	T	rs2273115	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	25	26	0	0.510204	0	C|0.781;T|0.218	0.218	strong	.	.	.	.	NM_012194	exon10	c.C3588T	p.I1196I	GGTCATCATCATC	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536880	88536880	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	17	180	0	0.114094	0	.	.	none	.	DSPP	174	.	NM_014208	exon5	c.C3066T	p.S1022S	CAGCAGCAATAGC	.	PASS	Atlas-SNP
AMZ2	51321	hgsc.bcm.edu	37	17	66253095	66253095	+	Silent	SNP	T	T	A	rs7105	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	36	94	0	0.444444	0	T|0.663;A|0.337	0.337	strong	.	AMZ2	15	.	NM_001033572	exon8	c.T1068A	p.A356A	CCTGGCTGTTCTC	.	PASS	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	37	16	72156842	72156842	+	Missense_Mutation	SNP	T	T	G	rs16973716	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	22	77	0	0.392857	0	T|0.542;G|0.458	0.458	strong	.	PMFBP1	101	.	NM_031293	exon19	c.A2739C	p.K913N	AATGTATTTCACC	.	PASS	Atlas-SNP
EIF3L	51386	hgsc.bcm.edu	37	22	38273749	38273749	+	Silent	SNP	T	T	C	rs9466	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	106	287	0	0.430894	0	T|0.574;C|0.426	0.426	strong	.	EIF3L	35	.	NM_016091	exon11	c.T1146C	p.I382I	GCGTATTGATGAG	.	PASS	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28827625	28827625	+	Missense_Mutation	SNP	C	C	T	rs34289907	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	90	149	0	0.46875	0	C|0.927;T|0.073	0.073	strong	.	PLB1	255	.	NM_153021	exon41	c.C2960T	p.A987V	TCCTGGCGGTATG	.	PASS	Atlas-SNP
C11orf84	144097	hgsc.bcm.edu	37	11	63585804	63585804	+	Silent	SNP	C	C	A	rs643634	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	20	53	0	0.487805	0	C|0.623;A|0.377	0.377	strong	.	C11orf84	33	.	NM_138471	exon3	c.C574A	p.R192R	AGGAGCCGGCCCA	.	PASS	Atlas-SNP
RSPH10B	222967	hgsc.bcm.edu	37	7	5983063	5983063	+	Missense_Mutation	SNP	C	C	T	rs17853305		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1049	262	1163	1	0.249762	0.000859845	.	.	weak	RSPH10B,NS,carcinoma,-1,2	RSPH10B	28	2	NM_173565	exon15	c.G1650A	p.M550I	GTAACTCATAGAG	.	PASS	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	37	12	64062065	64062065	+	Missense_Mutation	SNP	T	T	C	rs10878075	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	45	166	0	0.319149	0	T|0.711;C|0.289	0.289	strong	.	DPY19L2	97	.	NM_173812	exon1	c.A109G	p.M37V	TTTCCATCTCCTC	.	PASS	Atlas-SNP
ZNF45	7596	hgsc.bcm.edu	37	19	44418775	44418775	+	Silent	SNP	C	C	T	rs61731635	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	69	144	0	0.475862	0	C|0.978;T|0.022	0.022	strong	.	ZNF45	51	.	NM_003425	exon10	c.G813A	p.T271T	CTCTCCCGTATGA	.	PASS	Atlas-SNP
SAMD9L	219285	hgsc.bcm.edu	37	7	92760738	92760738	+	Missense_Mutation	SNP	T	T	G	rs10282508	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	265	128	272	0	0.483019	0	T|0.887;G|0.113	0.113	strong	.	SAMD9L	227	.	NM_152703	exon5	c.A4547C	p.N1516T	ACTTCATTTTTTT	.	PASS	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	37	8	118847782	118847782	+	Silent	SNP	G	G	A	rs11546829	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	74	84	1	0.986667	0.0119048	G|0.774;A|0.226	0.226	strong	EXT1,NS,carcinoma,0,1	EXT1	98	1	NM_000127	exon3	c.C1065T	p.C355C	AGGGACGCAGGCA	.	scavenged	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	37	12	43769276	43769276	+	Silent	SNP	T	T	C	rs10880473	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	159	155	0	0.99375	0	T|0.747;C|0.253	0.253	strong	ADAMTS20_ENST00000389420,neck,malignant_melanoma,-2,1	ADAMTS20	635	1	NM_025003	exon36	c.A5352G	p.R1784R	TTCCCTTCTACTC	.	PASS	Atlas-SNP
OR10H3	26532	hgsc.bcm.edu	37	19	15852363	15852363	+	Missense_Mutation	SNP	G	G	A	rs11670007	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	125	246	2	0.494071	0.00813008	G|0.700;A|0.300	0.300	strong	OR10H3,caecum,carcinoma,+1,2	OR10H3	53	2	NM_013938	exon1	c.G161A	p.R54H	TTGAACGCAGACT	.	scavenged	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	37	15	56208933	56208933	+	Missense_Mutation	SNP	T	T	C	rs1912403	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	99	160	0	0.582353	0	T|0.945;C|0.055	0.055	strong	.	NEDD4	167	.	NM_198400	exon1	c.A97G	p.M33V	AGCACATGTGAAC	.	PASS	Atlas-SNP
DIS3L	115752	hgsc.bcm.edu	37	15	66621346	66621346	+	Missense_Mutation	SNP	A	A	G	rs17258507	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	70	108	0	0.551181	0	A|0.946;G|0.054	0.054	strong	.	DIS3L	175	.	NM_001143688	exon13	c.A2240G	p.N747S	ATGCGAACGACCC	.	PASS	Atlas-SNP
KIAA1804	0	hgsc.bcm.edu	37	1	233498026	233498026	+	Silent	SNP	C	C	T	rs56052041	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	22	50	0	0.488889	0	C|0.972;T|0.028	0.028	strong	.	KIAA1804	129	.	NM_032435	exon5	c.C1539T	p.I513I	TCGAATCAGTTTA	.	PASS	Atlas-SNP
LRRC17	10234	hgsc.bcm.edu	37	7	102574715	102574715	+	Missense_Mutation	SNP	A	A	G	rs3800939	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	67	121	0	0.527559	0	A|0.942;G|0.058	0.058	strong	.	LRRC17	45	.	NM_005824	exon2	c.A355G	p.K119E	ATCTCTAAAATTG	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187540654	187540654	+	Silent	SNP	T	T	A	rs3796647	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	54	139	0	0.385714	0	T|0.927;A|0.073	0.073	strong	.	FAT1	500	.	NM_005245	exon10	c.A7086T	p.A2362A	ATCAACTGCCCTC	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44111613	44111613	+	Silent	SNP	A	A	G	rs17574604	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	149	138	0	1	0	A|0.853;G|0.147	0.147	strong	KIAA1267,NS,carcinoma,0,1	.	.	1	NM_001193466	exon11	c.T2580C	p.F860F	AATATCAAATGAG	.	PASS	Atlas-SNP
DEGS2	123099	hgsc.bcm.edu	37	14	100615961	100615961	+	Missense_Mutation	SNP	C	C	T	rs4905937	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	20	19	0	0.769231	0	C|0.864;T|0.136	0.136	strong	.	DEGS2	25	.	NM_206918	exon2	c.G169A	p.A57T	AGCAGGCCAGCAT	.	PASS	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	37	4	186548067	186548067	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	2	141	0	0.0151515	0	.	.	none	SORBS2_ENST00000448662,colon,carcinoma,0,4	SORBS2	300	4	NM_001145673	exon15	c.C1594T	p.R532X	CCACTCGGCCTGG	.	scavenged	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37507982	37507982	+	Silent	SNP	A	A	C	rs35138017	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	94	239	0	0.492147	0	A|0.969;C|0.031	0.031	strong	.	ANKRD30A	448	.	NM_052997	exon34	c.A3174C	p.L1058L	CATGCTAAAACTG	.	PASS	Atlas-SNP
NAAA	27163	hgsc.bcm.edu	37	4	76857388	76857388	+	Silent	SNP	C	C	T	rs4859572	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	26	47	0	0.577778	0	C|0.772;T|0.228	0.228	strong	.	NAAA	26	.	NM_014435	exon3	c.G372A	p.V124V	GCAGAACCTGAGA	.	PASS	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	37	4	264941	264941	+	Missense_Mutation	SNP	A	A	G	rs11731285	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	16	30	0	0.421053	0	A|0.752;G|0.248	0.248	strong	.	ZNF732	117	.	NM_001137608	exon3	c.T1702C	p.W568R	AGGACCACTTAAA	.	PASS	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	37	12	88505633	88505633	+	Silent	SNP	A	A	G	rs45465996	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	40	78	0	0.533333	0	A|0.892;G|0.108	0.108	strong	.	CEP290	195	.	NM_025114	exon21	c.T2055C	p.A685A	TTCTATAGCCTAG	.	PASS	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	37	12	114386639	114386639	+	Silent	SNP	A	A	G	rs7966348	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	54	103	0	0.477876	0	A|0.823;G|0.177	0.177	strong	RBM19,NS,carcinoma,0,1	RBM19	117	1	NM_001146699	exon10	c.T1275C	p.Y425Y	CCTACCATATTTG	.	PASS	Atlas-SNP
CLIC5	53405	hgsc.bcm.edu	37	6	46047640	46047640	+	Missense_Mutation	SNP	T	T	C	rs723580	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	54	99	0	0.477876	0	T|0.962;C|0.038	0.038	strong	.	CLIC5	48	.	NM_001114086	exon1	c.A340G	p.T114A	CCTGGGTTGATGA	.	PASS	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	37	16	31418869	31418869	+	Silent	SNP	A	A	G	rs62001041	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	46	132	0	0.393162	0	A|0.961;G|0.039	0.039	strong	.	ITGAD	154	.	NM_005353	exon8	c.A738G	p.R246R	GGCCCGAAAAAGT	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	603769	603769	+	Silent	SNP	T	T	C	rs55659726	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	75	149	0	0.572519	0	T|0.835;C|0.165	0.165	strong	.	HCN2	36	.	NM_001194	exon2	c.T858C	p.Y286Y	GAAGTATCTGCGC	.	PASS	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	37	17	649547	649547	+	Missense_Mutation	SNP	G	G	C	rs910925	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	61	73	0	1	0	G|0.346;C|0.654	0.654	strong	.	GEMIN4	116	.	NM_015721	exon2	c.C1736G	p.A579G	ATCTGGGCCAGGA	.	PASS	Atlas-SNP
MARVELD3	91862	hgsc.bcm.edu	37	16	71660404	71660404	+	Missense_Mutation	SNP	G	G	A	rs61753635	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	17	25	0	0.566667	0	G|0.784;A|0.216	0.216	strong	.	MARVELD3	63	.	NM_001017967	exon1	c.G272A	p.R91Q	CCCGCCGGGACAC	.	PASS	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	37	12	670595	670595	+	Missense_Mutation	SNP	G	G	A	rs36078145	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	36	53	0	0.553846	0	G|0.958;A|0.042	0.042	strong	.	B4GALNT3	64	.	NM_173593	exon20	c.G2975A	p.R992H	GGAGCCGTCGCCA	.	PASS	Atlas-SNP
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629193	32629193	+	Missense_Mutation	SNP	C	C	T	rs1049163	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	29	6	2	0.935484	0.333333	T|0.404;C|0.596	0.404	strong	HLA-DQB1,NS,chondrosarcoma,0,1	HLA-DQB1	15	1	NM_002123	exon4	c.G703A	p.V235I	CTCCAACGCCACT	.	scavenged	Atlas-SNP
ATXN7	6314	hgsc.bcm.edu	37	3	63981635	63981635	+	Silent	SNP	C	C	T	rs3733125	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	55	81	0	0.561224	0	C|0.892;T|0.108	0.108	strong	ATXN7,NS,carcinoma,0,1	ATXN7	126	1	NM_000333	exon12	c.C2137T	p.L713L	TCCCCACTGTTGG	.	PASS	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	37	20	33589107	33589107	+	Silent	SNP	G	G	A	rs36003887	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	59	91	0	0.522124	0	G|0.819;A|0.181	0.181	strong	.	MYH7B	145	.	NM_020884	exon42	c.G5661A	p.K1887K	CCTTAAGGGCGTG	.	PASS	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52548818	52548818	+	Silent	SNP	C	C	T	rs740903	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	46	71	0	0.479167	0	C|0.890;T|0.110	0.110	strong	.	STAB1	178	.	NM_015136	exon35	c.C3780T	p.C1260C	TCGCTGCCTGCAT	.	PASS	Atlas-SNP
JAM2	58494	hgsc.bcm.edu	37	21	27056250	27056250	+	Silent	SNP	A	A	G	rs8133602	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	39	60	0	0.453488	0	A|0.877;G|0.123	0.123	strong	JAM2,NS,carcinoma,0,1	JAM2	33	1	NM_021219	exon2	c.A123G	p.V41V	AGCAGTAGAGTAC	.	PASS	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	37	12	70953277	70953277	+	Silent	SNP	T	T	C	rs2303963	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	187	210	0	0.984211	0	T|0.804;C|0.196	0.196	strong	.	PTPRB	676	.	NM_001109754	exon18	c.A4560G	p.A1520A	AGTAAGTGCATCT	.	PASS	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	37	1	185171869	185171869	+	Missense_Mutation	SNP	A	A	G	rs6698109	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	69	132	0	0.507353	0	A|0.699;G|0.301	0.301	strong	.	SWT1	88	.	NM_017673	exon11	c.A1607G	p.H536R	TATTACACTTATC	.	PASS	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	37	9	130493513	130493513	+	Silent	SNP	A	A	G	rs482095	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	85	139	0	0.456989	0	A|0.372;G|0.628	0.628	strong	.	TTC16	55	.	NM_144965	exon14	c.A2451G	p.K817K	CAGCAAAACTGAG	.	PASS	Atlas-SNP
SLC22A14	9389	hgsc.bcm.edu	37	3	38357961	38357961	+	Missense_Mutation	SNP	C	C	G	rs240033	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	73	79	0	0.557252	0	C|0.724;G|0.276	0.276	strong	.	SLC22A14	64	.	NM_004803	exon9	c.C1679G	p.P560R	TGCTGCCGGAAAC	.	PASS	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	37	16	58001086	58001086	+	Silent	SNP	C	C	T	rs61997250	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	44	93	0	0.478261	0	C|0.981;T|0.019	0.019	strong	.	CNGB1	105	.	NM_001297	exon2	c.G105A	p.A35A	CACCTCCGCCTCC	.	PASS	Atlas-SNP
MKX	283078	hgsc.bcm.edu	37	10	27964470	27964470	+	Silent	SNP	G	G	A	rs2253230	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	149	174	0	0.993333	0	G|0.693;A|0.307	0.307	strong	.	MKX	43	.	NM_001242702	exon6	c.C852T	p.N284N	GGATCCGTTTTCC	.	PASS	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	37	8	123965193	123965193	+	Silent	SNP	C	C	T	rs111726812	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	70	1	0.457143	0.0142857	C|0.965;T|0.035	0.035	strong	ZHX2,caecum,carcinoma,0,1	ZHX2	106	1	NM_014943	exon3	c.C1443T	p.S481S	CAGGAGCGAGATC	.	scavenged	Atlas-SNP
SNX31	169166	hgsc.bcm.edu	37	8	101608919	101608919	+	Missense_Mutation	SNP	T	T	C	rs2248609	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	57	108	0	0.435115	0	T|0.613;C|0.387	0.387	strong	.	SNX31	66	.	NM_152628	exon10	c.A926G	p.Q309R	ATGTCCTGGGTCT	.	PASS	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	37	8	106814656	106814656	+	Missense_Mutation	SNP	G	G	C	rs2920048	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	71	199	0	0.518248	0	G|0.927;C|0.073	0.073	strong	ZFPM2,trunk,malignant_melanoma,+2,1	ZFPM2	219	1	NM_012082	exon8	c.G2346C	p.E782D	AGGAGAGTGCTAC	.	PASS	Atlas-SNP
PSMC5	5705	hgsc.bcm.edu	37	17	61908271	61908271	+	Silent	SNP	C	C	T	rs968719	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	94	114	0	1	0	T|0.696;G|0.002	0.696	strong	.	PSMC5	41	.	NM_002805	exon7	c.C655T	p.L219L	TCTGAACTGGTAC	.	PASS	Atlas-SNP
WFDC8	90199	hgsc.bcm.edu	37	20	44184498	44184498	+	Missense_Mutation	SNP	A	A	G	rs2272955	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	42	127	0	0.396226	0	A|0.897;G|0.103	0.103	strong	WFDC8,NS,carcinoma,0,1	WFDC8	28	1	NM_181510	exon4	c.T287C	p.M96T	GGTAGCATGCAGG	.	PASS	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53103382	53103382	+	Silent	SNP	G	G	T	rs72598685	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	31	48	0	0.584906	0	G|0.718;T|0.282	0.282	strong	.	POM121L12	146	.	NM_182595	exon1	c.G18T	p.P6P	AGCTCCGGCCGAG	.	PASS	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	37	11	4661450	4661450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	2	175	1	0.0123457	0.00571429	.	.	none	OR51D1,NS,carcinoma,-1,2	OR51D1	49	2	NM_001004751	exon1	c.C430T	p.R144C	CCATTGCGCCATG	.	scavenged	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	37	X	152823728	152823728	+	Silent	SNP	G	G	C	rs2269415	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	149	149	0	0.993333	0	0|0.002;C|0.416	0.416	strong	.	ATP2B3	552	.	NM_001001344	exon15	c.G2592C	p.V864V	GGCTGTGATCGTG	.	PASS	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	37	5	35692775	35692775	+	Missense_Mutation	SNP	T	T	A	rs7710284	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	115	216	0	0.487288	0	T|0.679;A|0.321	0.321	strong	.	SPEF2	324	.	NM_024867	exon12	c.T1848A	p.N616K	GAAAAATGATGAA	.	PASS	Atlas-SNP
TEAD3	7005	hgsc.bcm.edu	37	6	35446225	35446225	+	Missense_Mutation	SNP	A	A	G	rs144697750	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	34	60	0	0.447368	0	A|0.995;G|0.005	0.005	strong	.	TEAD3	52	.	NM_003214	exon6	c.T466C	p.S156P	AAGTGGAGAAGAC	.	PASS	Atlas-SNP
MX1	4599	hgsc.bcm.edu	37	21	42824661	42824661	+	Silent	SNP	A	A	G	rs1050008	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	40	60	0	0.57971	0	A|0.796;G|0.204	0.204	strong	.	MX1	58	.	NM_001144925	exon18	c.A1623G	p.A541A	GGGTGCATTGCAG	.	PASS	Atlas-SNP
GALR2	8811	hgsc.bcm.edu	37	17	74072923	74072923	+	Missense_Mutation	SNP	T	T	G	rs369779116		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	29	50	0	0.446154	0	.	.	weak	.	GALR2	17	.	NM_003857	exon2	c.T575G	p.F192C	GCACCTTCGTCTT	.	PASS	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	37	9	139347953	139347953	+	Missense_Mutation	SNP	G	G	A	rs202042941	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	9	29	0	0.321429	0	.	.	weak	.	SEC16A	249	.	NM_014866	exon22	c.C6086T	p.P2029L	TCCTGCGGCACTA	.	PASS	Atlas-SNP
FAM20A	54757	hgsc.bcm.edu	37	17	66538239	66538239	+	Missense_Mutation	SNP	G	G	T	rs2302234	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	31	81	0	0.455882	0	A|0.003;C|0.004	.	strong	.	FAM20A	35	.	NM_017565	exon7	c.C996A	p.N332K	GTGTGGGTTGCCA	.	PASS	Atlas-SNP
CECR5	27440	hgsc.bcm.edu	37	22	17618937	17618937	+	Missense_Mutation	SNP	G	G	A	rs35327402	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	64	103	0	0.566372	0	G|0.996;A|0.004	0.004	strong	.	CECR5	46	.	NM_033070	exon8	c.C1246T	p.R416C	CCTTGCGGAAGAC	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187542316	187542316	+	Silent	SNP	T	T	C	rs2099854	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	38	69	0	0.44186	0	T|0.923;C|0.077	0.077	strong	.	FAT1	500	.	NM_005245	exon10	c.A5424G	p.V1808V	GTGATATACAAGC	.	PASS	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	37	11	117266312	117266312	+	Missense_Mutation	SNP	C	C	G	rs2305830	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	65	155	0	0.451389	0	C|0.709;G|0.291	0.291	strong	.	CEP164	121	.	NM_001271933	exon23	c.C2972G	p.T991S	AGCACACCCACCT	.	PASS	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	37	15	75982085	75982085	+	Missense_Mutation	SNP	C	C	T	rs79463888	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	17	166	0	0.124088	0	C|0.878;T|0.122	0.122	strong	CSPG4,NS,haematopoietic_neoplasm,0,1	CSPG4	175	1	NM_001897	exon3	c.G1321A	p.E441K	CCCCCTCGGCCAC	.	PASS	Atlas-SNP
ARID3C	138715	hgsc.bcm.edu	37	9	34627940	34627940	+	Silent	SNP	C	C	T	rs13283357	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	56	89	0	0.565657	0	C|0.766;T|0.234	0.234	strong	.	ARID3C	33	.	NM_001017363	exon1	c.G72A	p.P24P	CAGCAGCGGGCAT	.	PASS	Atlas-SNP
ALX4	60529	hgsc.bcm.edu	37	11	44331509	44331509	+	Missense_Mutation	SNP	C	C	G	rs3824915	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	114	94	0	1	0	C|0.594;G|0.406	0.406	strong	.	ALX4	58	.	NM_021926	exon1	c.G104C	p.R35T	AATGCCCTAAAAG	.	PASS	Atlas-SNP
TYW1	55253	hgsc.bcm.edu	37	7	66660247	66660247	+	Silent	SNP	T	T	C	rs71563186		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	48	206	0	0.303797	0	T|0.500;C|0.500	0.500	weak	TYW1,NS,carcinoma,0,1	TYW1	71	1	NM_018264	exon15	c.T1900C	p.L634L	CACGAGTTGGTGG	.	scavenged	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036853	33036853	+	Missense_Mutation	SNP	A	A	C	rs1042308	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	53	129	0	0.441667	0	T|0.000;G|0.000;C|0.321;N|0.000;A|0.679	0.321	strong	.	HLA-DPA1	20	.	NM_033554	exon3	c.T571G	p.F191V	CATAGAAGTCCTC	.	PASS	Atlas-SNP
FAM129C	199786	hgsc.bcm.edu	37	19	17638144	17638144	+	Missense_Mutation	SNP	A	A	C	rs200304763	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	89	194	0	0.427885	0	A|0.998;C|0.002	0.002	strong	.	FAM129C	110	.	NM_001098524	exon2	c.A88C	p.S30R	GACGACAGCAGCA	.	PASS	Atlas-SNP
C1orf189	388701	hgsc.bcm.edu	37	1	154178079	154178079	+	Silent	SNP	G	G	A	rs74957241	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	34	85	0	0.390805	0	G|0.926;A|0.074	0.074	strong	C1orf189,NS,carcinoma,-2,1	C1orf189	17	1	NM_001010979	exon2	c.C69T	p.V23V	CCTGTCGACCGTC	.	PASS	Atlas-SNP
KRT33A	3883	hgsc.bcm.edu	37	17	39502398	39502398	+	Silent	SNP	A	A	G	rs16966703	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	88	162	0	0.53012	0	A|0.854;G|0.146	0.146	strong	.	KRT33A	53	.	NM_004138	exon7	c.T1188C	p.C396C	AGGCCCACACCGA	.	PASS	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	37	22	24468386	24468386	+	Missense_Mutation	SNP	G	G	A	rs17854874	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	75	147	0	0.480769	0	G|0.926;A|0.074	0.074	strong	.	CABIN1	153	.	NM_001199281	exon18	c.G2558A	p.R853Q	TACACCGGATCAT	.	PASS	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	37	11	33564123	33564123	+	Silent	SNP	T	T	C	rs2076623	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	52	104	0	0.412698	0	T|0.300;C|0.700	0.700	strong	.	.	.	.	NM_012194	exon1	c.T123C	p.G41G	AGCAGGTTCATCC	.	PASS	Atlas-SNP
MTMR8	55613	hgsc.bcm.edu	37	X	63488670	63488670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	75	71	0	1	0	.	.	none	.	MTMR8	178	.	NM_017677	exon14	c.C1862A	p.A621D	TTTATGGCCCTAA	.	PASS	Atlas-SNP
MANSC4	100287284	hgsc.bcm.edu	37	12	27916224	27916224	+	Missense_Mutation	SNP	A	A	G	rs11049126	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	282	137	294	0	0.485816	0	A|0.859;G|0.141	0.141	strong	.	MANSC4	9	.	NM_001146221	exon3	c.T470C	p.L157S	TTATCTAAATTCA	.	PASS	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	37	15	90768959	90768959	+	Silent	SNP	A	A	C	rs908044	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	55	0	0.457143	0	A|0.634;C|0.366	0.366	strong	.	SEMA4B	51	.	NM_020210	exon13	c.A1588C	p.R530R	CTGTACAGGAGCT	.	PASS	Atlas-SNP
ICAM3	3385	hgsc.bcm.edu	37	19	10449392	10449392	+	Silent	SNP	A	A	G	rs2304240	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	76	172	0	0.493506	0	A|0.149;G|0.851	0.851	strong	ICAM3,NS,carcinoma,-1,1	ICAM3	29	1	NM_002162	exon2	c.T309C	p.S103S	TATCTGAGAGCCA	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73207372	73207372	+	Missense_Mutation	SNP	T	T	A	rs1478453	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	44	110	0	0.44	0	T|0.663;A|0.337	0.337	strong	.	.	.	.	NM_001080479	exon35	c.T4920A	p.H1640Q	TTTCCATGAAAGC	.	PASS	Atlas-SNP
CT45A5	441521	hgsc.bcm.edu	37	X	134948034	134948034	+	Silent	SNP	A	A	G	rs2034920	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	129	108	0	1	0	0|0.004;G|0.789	0.789	strong	.	CT45A5	26	.	NM_001007551	exon3	c.T291C	p.N97N	GGTAACATTTCCT	.	PASS	Atlas-SNP
STON1	11037	hgsc.bcm.edu	37	2	48808882	48808882	+	Silent	SNP	T	T	A	rs3749144	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	51	83	0	0.515152	0	T|0.678;A|0.322	0.322	strong	.	STON1	100	.	NM_001198595	exon3	c.T1110A	p.P370P	TGAACCTGACATA	.	PASS	Atlas-SNP
MICALCL	84953	hgsc.bcm.edu	37	11	12315335	12315335	+	Silent	SNP	C	C	A	rs79609470	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	28	68	0	0.4375	0	C|0.958;A|0.042	0.042	strong	.	MICALCL	59	.	NM_032867	exon3	c.C357A	p.A119A	AGAGGCCCCTCTT	.	PASS	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	37	14	94007075	94007075	+	Silent	SNP	C	C	T	rs1951716	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	27	59	0	0.509434	0	C|0.455;T|0.545	0.545	strong	UNC79,NS,chondrosarcoma,+1,2	UNC79	366	2	NM_020818	exon13	c.C891T	p.G297G	GCTGGGCCTCTCC	.	PASS	Atlas-SNP
CTBS	1486	hgsc.bcm.edu	37	1	85029077	85029077	+	Missense_Mutation	SNP	C	C	T	rs15911	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	54	149	0	0.406015	0	C|0.831;T|0.169	0.169	strong	.	CTBS	24	.	NM_004388	exon6	c.G820A	p.V274I	AAGGGACTTTTGC	.	PASS	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	37	2	26676395	26676395	+	Missense_Mutation	SNP	G	G	T	rs12623642	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	44	127	0	0.396396	0	G|0.875;T|0.125	0.125	strong	.	CCDC164	84	.	NM_145038	exon14	c.G1897T	p.V633F	GCCTTCGTCATGG	.	PASS	Atlas-SNP
DOK2	9046	hgsc.bcm.edu	37	8	21767275	21767275	+	Silent	SNP	C	C	G	rs2242240	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	64	136	0	0.432432	0	C|0.846;G|0.154	0.154	strong	.	DOK2	51	.	NM_003974	exon5	c.G786C	p.A262A	CAGCGACGCGGGG	.	PASS	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	37	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	9	148	0	0.0592105	0	.	.	none	GNAQ,NS,carcinoma,0,2	GNAQ	384	2	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	scavenged	Atlas-SNP
B4GALT3	8703	hgsc.bcm.edu	37	1	161143801	161143801	+	Silent	SNP	G	G	A	rs3813619	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	17	41	0	0.404762	0	G|0.946;A|0.054	0.054	strong	.	B4GALT3	39	.	NM_003779	exon5	c.C528T	p.N176N	CCCAACGTTCAAC	.	PASS	Atlas-SNP
CES5A	221223	hgsc.bcm.edu	37	16	55883618	55883618	+	Silent	SNP	T	T	C	rs2160276	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	82	95	0	0.97619	0	T|0.282;C|0.718	0.718	strong	.	CES5A	206	.	NM_001190158	exon12	c.A1428G	p.P476P	AAAAGCTGGCTTC	.	PASS	Atlas-SNP
EFCAB7	84455	hgsc.bcm.edu	37	1	63991267	63991267	+	Silent	SNP	T	T	C	rs217478	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	136	183	1	1	0.00546448	C|0.347;N|0.000	0.347	strong	EFCAB7,colon,carcinoma,+2,1	EFCAB7	45	1	NM_032437	exon2	c.T24C	p.D8D	AAGCGATGCAACT	.	PASS	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	37	7	43519337	43519337	+	Silent	SNP	T	T	C	rs2304327	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	59	90	0	0.59596	0	T|0.892;C|0.108	0.108	strong	.	HECW1	540	.	NM_015052	exon17	c.T3228C	p.A1076A	CAGCGCTGGAGAG	.	PASS	Atlas-SNP
ARL10	285598	hgsc.bcm.edu	37	5	175793532	175793532	+	Silent	SNP	C	C	T	rs2303666	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	41	78	0	0.525641	0	C|0.894;T|0.106	0.106	strong	.	ARL10	19	.	NM_173664	exon2	c.C333T	p.G111G	CTGGGGCTTCAAC	.	PASS	Atlas-SNP
NOM1	64434	hgsc.bcm.edu	37	7	156743264	156743264	+	Missense_Mutation	SNP	C	C	A	rs61747373	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	27	67	0	0.519231	0	C|0.807;A|0.193	0.193	strong	.	NOM1	73	.	NM_138400	exon1	c.C833A	p.A278E	CAGAAGCGCAGAG	.	PASS	Atlas-SNP
CCDC71	64925	hgsc.bcm.edu	37	3	49200627	49200627	+	Missense_Mutation	SNP	A	A	G	rs4955418	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	123	109	0	1	0	A|0.347;G|0.653	0.653	strong	.	CCDC71	33	.	NM_022903	exon2	c.T1015C	p.W339R	TGGCCCATGCTGC	.	PASS	Atlas-SNP
JMJD4	65094	hgsc.bcm.edu	37	1	227920103	227920103	+	Missense_Mutation	SNP	G	G	A	rs3087908	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	293	150	301	0	0.511945	0	G|0.818;N|0.001	.	strong	.	JMJD4	28	.	NM_023007	exon6	c.C1382T	p.A461V	GGGGCCGCAGCAG	.	PASS	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	37	18	45566276	45566276	+	Silent	SNP	G	G	A	rs80109066	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	10	37	0	0.434783	0	G|0.804;A|0.196	0.196	strong	.	ZBTB7C	73	.	NM_001039360	exon2	c.C1203T	p.F401F	CCTGGTGAAGCGG	.	PASS	Atlas-SNP
VAV2	7410	hgsc.bcm.edu	37	9	136662928	136662928	+	Silent	SNP	A	A	G	rs7865299	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	116	103	0	1	0	A|0.741;G|0.259	0.259	strong	.	VAV2	165	.	NM_001134398	exon10	c.T840C	p.L280L	GATCAGAAGCCTG	.	PASS	Atlas-SNP
ALOXE3	59344	hgsc.bcm.edu	37	17	7999957	7999957	+	Silent	SNP	G	G	A	rs3809881	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	107	265	1	0.424603	0.00377358	G|0.593;A|0.407	0.407	strong	ALOXE3_ENST00000318227,NS,carcinoma,0,2	ALOXE3	145	2	NM_001165960	exon16	c.C2520T	p.S840S	GGAGACGCTGTTC	.	PASS	Atlas-SNP
TSSC1	7260	hgsc.bcm.edu	37	2	3261173	3261173	+	Silent	SNP	A	A	G	rs10188932	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	78	143	0	0.52	0	A|0.960;G|0.040	0.040	strong	.	TSSC1	39	.	NM_003310	exon4	c.T313C	p.L105L	ATTCCAATTCCTT	.	PASS	Atlas-SNP
SMCO2	0	hgsc.bcm.edu	37	12	27648786	27648786	+	Silent	SNP	A	A	G	rs306646	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	36	78	0	0.428571	0	A|0.729;G|0.271	0.271	strong	.	.	.	.	NM_001145010	exon8	c.A831G	p.A277A	TACAGCATGGTAA	.	PASS	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	37	1	86590948	86590948	+	Silent	SNP	A	A	G	rs11161746	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	91	233	1	0.461929	0.00429185	A|0.886;G|0.114	0.114	strong	.	COL24A1	202	.	NM_152890	exon3	c.T1071C	p.S357S	TGCCTCACTGATG	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189184	11189184	+	Missense_Mutation	SNP	C	C	T	rs115295428	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	34	146	0	0.162679	0	C|0.978;T|0.022	0.022	strong	AMAC1L2,NS,carcinoma,0,1	.	.	1	NM_054028	exon1	c.C569T	p.T190I	ACACCACCCTGGG	.	scavenged	Atlas-SNP
ITPK1	3705	hgsc.bcm.edu	37	14	93412743	93412743	+	Silent	SNP	G	G	A	rs2295394	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	64	92	0	0.453901	0	G|0.914;A|0.086	0.086	strong	.	ITPK1	53	.	NM_001142593	exon10	c.C834T	p.F278F	GATGCCGAAGAGT	.	PASS	Atlas-SNP
GEN1	348654	hgsc.bcm.edu	37	2	17942775	17942775	+	Missense_Mutation	SNP	T	T	A	rs1812152	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	95	205	0	0.443925	0	T|0.279;A|0.721	0.721	strong	.	GEN1	79	.	NM_182625	exon3	c.T274A	p.S92T	AATCAGTCTCGGT	.	PASS	Atlas-SNP
PARVG	64098	hgsc.bcm.edu	37	22	44594584	44594584	+	Silent	SNP	C	C	G	rs139152	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	87	173	0	0.462766	0	C|0.712;G|0.288	0.288	strong	.	PARVG	41	.	NM_001137606	exon12	c.C795G	p.P265P	CACTCCCAACTCT	.	PASS	Atlas-SNP
LIG4	3981	hgsc.bcm.edu	37	13	108861913	108861913	+	Silent	SNP	A	A	G	rs1805386	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	70	153	0	0.492958	0	A|0.870;G|0.130	0.130	strong	.	LIG4	91	.	NM_206937	exon3	c.T1704C	p.D568D	ATACATATCACTG	.	PASS	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	37	14	58910784	58910784	+	Missense_Mutation	SNP	G	G	A	rs193056942	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	290	129	315	0	0.444828	0	G|0.999;A|0.001	0.001	strong	.	KIAA0586	180	.	NM_001244189	exon8	c.G857A	p.R286K	TTCAGAGGAAACA	.	PASS	Atlas-SNP
DECR2	26063	hgsc.bcm.edu	37	16	460976	460976	+	Silent	SNP	G	G	A	rs140561403	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	55	91	0	0.52381	0	G|0.988;A|0.012	0.012	strong	DECR2,NS,carcinoma,+1,1	DECR2	47	1	NM_020664	exon7	c.G561A	p.A187A	AGACGCGATGACG	.	PASS	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127638759	127638759	+	Silent	SNP	A	A	G	rs11955288	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	30	46	0	0.441176	0	A|0.901;G|0.099	0.099	strong	.	FBN2	858	.	NM_001999	exon46	c.T5823C	p.H1941H	ACATGGATGCCGC	.	PASS	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	37	10	69934012	69934012	+	Silent	SNP	C	C	A	rs71584491	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	88	150	0	0.502857	0	C|0.956;A|0.044	0.044	strong	.	MYPN	189	.	NM_032578	exon11	c.C2163A	p.A721A	CTTGGCCCGGCCG	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47855876	47855876	+	Silent	SNP	A	A	G	rs17371795	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	44	110	0	0.435644	0	A|0.881;G|0.119	0.119	strong	.	PCNT	283	.	NM_006031	exon39	c.A8811G	p.T2937T	GCAGACAGTGAGA	.	PASS	Atlas-SNP
LMX1A	4009	hgsc.bcm.edu	37	1	165218679	165218679	+	Silent	SNP	C	C	T	rs9970062	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	71	154	0	0.430303	0	C|0.720;T|0.280	0.280	strong	.	LMX1A	87	.	NM_001174069	exon4	c.G462A	p.L154L	GCTGAGCAGCTCC	.	PASS	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	37	17	7411770	7411770	+	Silent	SNP	C	C	T	rs2228132	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	103	149	1	0.492823	0.00671141	C|0.834;T|0.166	0.166	strong	POLR2A,caecum,carcinoma,0,1	POLR2A	157	1	NM_000937	exon20	c.C3441T	p.S1147S	CCAGTCCGCTCGA	.	scavenged	Atlas-SNP
OR10H5	284433	hgsc.bcm.edu	37	19	15905414	15905414	+	Missense_Mutation	SNP	A	A	C	rs61741438	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	293	150	199	0	0.511945	0	A|0.985;C|0.015	0.015	strong	.	OR10H5	49	.	NM_001004466	exon1	c.A556C	p.K186Q	CTGTTGAAGTTGG	.	PASS	Atlas-SNP
CNN2	1265	hgsc.bcm.edu	37	19	1036468	1036468	+	Silent	SNP	A	A	G	rs1064411	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	77	159	0	0.442529	0	A|0.837;G|0.163	0.163	strong	.	CNN2	26	.	NM_004368	exon6	c.A561G	p.R187R	CACGAGAAGGCAT	.	PASS	Atlas-SNP
ASIC3	9311	hgsc.bcm.edu	37	7	150747650	150747650	+	Silent	SNP	G	G	T	rs62001897	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	68	88	0	0.571429	0	G|0.956;T|0.044	0.044	strong	.	.	.	.	NM_020322	exon3	c.G768T	p.G256G	CTTGGGGGTGTCC	.	PASS	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	37	20	3672240	3672240	+	Silent	SNP	G	G	A	rs111969446	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	37	43	0	0.578125	0	G|0.985;A|0.015	0.015	strong	.	SIGLEC1	210	.	NM_023068	exon17	c.C4338T	p.R1446R	CACCACGCGTGCA	.	PASS	Atlas-SNP
PLEKHG7	440107	hgsc.bcm.edu	37	12	93147907	93147907	+	Silent	SNP	A	A	T	rs9669519	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	68	167	0	0.503704	0	A|0.440;T|0.560	0.560	strong	.	PLEKHG7	38	.	NM_001004330	exon6	c.A357T	p.P119P	CGTGCCAGAGCTG	.	PASS	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	37	12	102224436	102224436	+	Silent	SNP	C	C	T	rs4764655	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	31	88	0	0.413333	0	C|0.900;T|0.100	0.100	strong	.	GNPTAB	120	.	NM_024312	exon1	c.G18A	p.L6L	TCTCTGCAGGAGC	.	PASS	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	37	12	105550565	105550565	+	Silent	SNP	C	C	T	rs35149056	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	39	102	0	0.40625	0	C|0.946;T|0.054	0.054	strong	.	KIAA1033	83	.	NM_015275	exon27	c.C2820T	p.A940A	CAATGCCATTAGG	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	37	14	20872881	20872881	+	Missense_Mutation	SNP	G	G	T	rs1760898	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	67	118	0	0.598214	0	G|0.682;T|0.318	0.318	strong	.	TEP1	224	.	NM_007110	exon5	c.C921A	p.N307K	CAAGATGTTATTG	.	PASS	Atlas-SNP
BCAS1	8537	hgsc.bcm.edu	37	20	52573971	52573971	+	Missense_Mutation	SNP	T	T	G	rs35575210	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	118	220	1	0.495798	0.00454545	T|0.857;G|0.143	0.143	strong	.	BCAS1	77	.	NM_003657	exon10	c.A1416C	p.Q472H	ACTTACTTGGCAG	.	PASS	Atlas-SNP
RNF130	55819	hgsc.bcm.edu	37	5	179498595	179498595	+	Silent	SNP	C	C	T	rs3749821	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	22	30	0	0.758621	0	T|0.569;C|0.431;A|0.000	0.569	strong	.	RNF130	49	.	NM_018434	exon1	c.G108A	p.T36T	GAGCGCCGTGTAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179430997	179430997	+	Missense_Mutation	SNP	G	G	A	rs3731746	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	83	142	0	0.560811	0	T|0.000;G|0.681;N|0.000;A|0.318	0.318	strong	.	TTN	18412	.	NM_001267550	exon326	c.C79862T	p.T26621M	TCAGGCGTTGGAC	.	PASS	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	37	10	122663585	122663585	+	Silent	SNP	G	G	A	rs1652727	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	29	56	0	0.508772	0	G|0.301;A|0.699	0.699	strong	.	WDR11	95	.	NM_018117	exon24	c.G2958A	p.L986L	TAATCTGCAGGAA	.	PASS	Atlas-SNP
MRPL37	51253	hgsc.bcm.edu	37	1	54681920	54681920	+	Missense_Mutation	SNP	G	G	C	rs13571	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	285	141	270	0	0.494737	0	G|0.305;C|0.695	0.695	strong	.	MRPL37	36	.	NM_016491	exon6	c.G1097C	p.C366S	TGGACTGTAACGA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179458591	179458591	+	Missense_Mutation	SNP	C	C	T	rs2288569	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	46	79	0	0.433962	0	C|0.818;T|0.182	0.182	strong	TTN_ENST00000359218,NS,carcinoma,-1,5	TTN	18412	5	NM_001267550	exon298	c.G58436A	p.R19479H	CCAGGACGGTCTG	.	PASS	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	37	13	109661359	109661359	+	Missense_Mutation	SNP	C	C	G	rs3825491	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	43	87	0	0.511905	0	C|0.610;G|0.390	0.390	strong	.	MYO16	285	.	NM_001198950	exon22	c.C2557G	p.P853A	TATTCTCCTGGTA	.	PASS	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	37	1	201079344	201079344	+	Missense_Mutation	SNP	G	G	C	rs12406479	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	74	168	2	0.5	0.0119048	G|0.967;C|0.033	0.033	strong	CACNA1S,NS,carcinoma,-1,1	CACNA1S	249	1	NM_000069	exon2	c.C206G	p.A69G	TACACGGCCAGGG	.	scavenged	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	37	3	184911151	184911151	+	Silent	SNP	T	T	C	rs3732933	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	81	154	0	0.47929	0	T|0.934;C|0.066	0.066	strong	.	EHHADH	73	.	NM_001966	exon7	c.A1035G	p.E345E	TTCTTTTTCCAAG	.	PASS	Atlas-SNP
METTL25	84190	hgsc.bcm.edu	37	12	82752559	82752559	+	Missense_Mutation	SNP	T	T	G	rs113882703	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	109	205	1	0.509346	0.00487805	T|0.939;G|0.061	0.061	strong	.	.	.	.	NM_032230	exon1	c.T215G	p.L72R	AGGCCCTGCCCTC	.	PASS	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	37	16	11001743	11001743	+	Silent	SNP	G	G	A	rs2229320	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	20	31	0	0.571429	0	G|0.820;A|0.180	0.180	strong	.	CIITA	92	.	NM_000246	exon11	c.G2394A	p.P798P	GCAGCCGGGGACA	.	PASS	Atlas-SNP
GALNT14	79623	hgsc.bcm.edu	37	2	31135184	31135184	+	Missense_Mutation	SNP	G	G	T	rs2288101	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	66	97	0	1	0	G|0.797;T|0.203	0.203	strong	.	GALNT14	103	.	NM_001253826	exon15	c.C1420A	p.Q474K	GGATCTGCTGGGT	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123229132	123229132	+	Silent	SNP	C	C	T	rs7688384	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	61	142	0	0.383648	0	C|0.717;T|0.283	0.283	strong	KIAA1109,NS,carcinoma,0,1	KIAA1109	424	1	NM_015312	exon56	c.C9870T	p.A3290A	TAAGGCCGCCTAT	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	37	3	47162661	47162661	+	Silent	SNP	A	A	G	rs6767907	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	134	140	0	1	0	A|0.343;G|0.657	0.657	strong	.	SETD2	721	.	NM_014159	exon3	c.T3465C	p.N1155N	CAGGCGATTATCT	.	PASS	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	37	1	11015165	11015165	+	Missense_Mutation	SNP	A	A	G	rs75130475	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	39	81	0	0.464286	0	A|0.843;G|0.157	0.157	strong	.	C1orf127	134	.	NM_001170754	exon9	c.T857C	p.I286T	TCCTCAATGTAGG	.	PASS	Atlas-SNP
OR52E2	119678	hgsc.bcm.edu	37	11	5080359	5080359	+	Missense_Mutation	SNP	G	G	A	rs11035396	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	32	66	0	0.52459	0	G|0.917;A|0.083	0.083	strong	OR52E2,caecum,carcinoma,0,1	OR52E2	63	1	NM_001005164	exon1	c.C499T	p.R167W	GCAACCGCAATAT	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76535948	76535948	+	Silent	SNP	T	T	C	rs7221209	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	219	217	220	0	0.990868	0	T|0.240;C|0.760	0.760	strong	.	DNAH17	347	.	NM_173628	exon18	c.A2547G	p.L849L	CCTGAATAGTTCT	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274415	39274415	+	Silent	SNP	C	C	T	rs425487		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	6	99	1	0.06	0.010101	.	.	weak	KRTAP4-11,NS,carcinoma,-1,11	KRTAP4-11	94	11	NM_033059	exon1	c.G153A	p.R51R	CTGGGGCCTGCAG	.	scavenged	Atlas-SNP
KCNQ1	3784	hgsc.bcm.edu	37	11	2797237	2797237	+	Silent	SNP	G	G	A	rs1057128	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	32	64	1	0.477612	0.015625	G|0.838;A|0.162	0.162	strong	KCNQ1,NS,carcinoma,0,1	KCNQ1	60	1	NM_000218	exon13	c.G1638A	p.S546S	GTACTCGCAGGGC	.	scavenged	Atlas-SNP
KXD1	79036	hgsc.bcm.edu	37	19	18679379	18679379	+	Missense_Mutation	SNP	C	C	G	rs7648	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	33	48	0	0.55	0	C|0.536;G|0.464	0.464	strong	.	.	.	.	NM_001171948	exon6	c.C469G	p.P157A	GTCCAGCCTGGCT	.	PASS	Atlas-SNP
BCAS4	55653	hgsc.bcm.edu	37	20	49411689	49411689	+	Silent	SNP	G	G	T	rs117388674	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	22	12	16	0	0.545455	0	G|0.963;T|0.037	0.037	strong	.	BCAS4	41	.	NM_198799	exon1	c.G159T	p.L53L	CTTCCTGACCCCC	.	PASS	Atlas-SNP
CHRNA4	1137	hgsc.bcm.edu	37	20	61991017	61991017	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	2	59	0	0.0377358	0	.	.	none	CHRNA4,NS,carcinoma,-1,1	CHRNA4	98	1	NM_000744	exon2	c.G111A	p.E37E	CCGCTCCTCGGCG	.	scavenged	Atlas-SNP
CAPN2	824	hgsc.bcm.edu	37	1	223954080	223954080	+	Missense_Mutation	SNP	A	A	C	rs17599	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	59	124	0	0.460938	0	A|0.649;C|0.175;G|0.031;T|0.145	0.175	strong	CAPN2,NS,carcinoma,0,1	CAPN2	69	1	NM_001748	exon16	c.A1702C	p.K568Q	GATATCAAGTCAG	.	PASS	Atlas-SNP
TTYH2	94015	hgsc.bcm.edu	37	17	72240177	72240177	+	Missense_Mutation	SNP	T	T	G	rs35999669	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	43	54	1	1	0.0185185	T|0.580;G|0.420	0.420	strong	TTYH2,NS,carcinoma,0,1	TTYH2	63	1	NM_032646	exon6	c.T793G	p.S265A	GATGGCTCTGCGG	.	scavenged	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	37	11	56468258	56468258	+	Missense_Mutation	SNP	C	C	T	rs78340277	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	305	72	315	0	0.236066	0	C|0.987;T|0.013	0.013	strong	.	.	.	.	NM_001013358	exon1	c.C395T	p.A132V	TTTATGCCCAGGC	.	PASS	Atlas-SNP
DCPS	28960	hgsc.bcm.edu	37	11	126201403	126201403	+	Silent	SNP	T	T	C	rs616360	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	19	52	0	0.372549	0	T|0.755;C|0.245	0.245	strong	.	DCPS	33	.	NM_014026	exon3	c.T480C	p.N160N	CAGGAATATTACT	.	PASS	Atlas-SNP
ACACB	32	hgsc.bcm.edu	37	12	109692053	109692053	+	Missense_Mutation	SNP	C	C	T	rs17848835	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	77	147	0	0.506579	0	C|0.894;T|0.106	0.106	strong	ACACB_ENST00000543201,colon,carcinoma,0,2	ACACB	330	2	NM_001093	exon43	c.C6080T	p.T2027I	CACCCACTGACCC	.	PASS	Atlas-SNP
FAM71A	149647	hgsc.bcm.edu	37	1	212799535	212799535	+	Missense_Mutation	SNP	G	G	A	rs114509113	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	27	66	0	0.391304	0	G|0.986;A|0.014	0.014	strong	FAM71A,NS,carcinoma,+1,1	FAM71A	87	1	NM_153606	exon1	c.G1316A	p.R439H	CCCATCGCCGCAG	.	PASS	Atlas-SNP
SOWAHD	347454	hgsc.bcm.edu	37	X	118893137	118893137	+	Silent	SNP	T	T	C	rs2782224	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	19	27	0	1	0	T|0.405;C|0.595	0.595	strong	.	.	.	.	NM_001105576	exon1	c.T507C	p.D169D	ACACGATTTCGCC	.	PASS	Atlas-SNP
VILL	50853	hgsc.bcm.edu	37	3	38038982	38038982	+	Silent	SNP	T	T	C	rs6809649	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	43	97	0	0.505882	0	T|0.768;C|0.232	0.232	strong	.	VILL	61	.	NM_015873	exon6	c.T570C	p.A190A	GCTGGCTTTGACC	.	PASS	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53103371	53103371	+	Missense_Mutation	SNP	G	G	T	rs72598684	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	24	39	0	0.545455	0	G|0.715;T|0.285	0.285	strong	.	POM121L12	146	.	NM_182595	exon1	c.G7T	p.A3S	ATGGGCGCTGCAG	.	PASS	Atlas-SNP
PCNXL4	64430	hgsc.bcm.edu	37	14	60591887	60591887	+	Missense_Mutation	SNP	G	G	A	rs167437	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	351	168	360	0	0.478632	0	G|0.700;A|0.300	0.300	strong	.	.	.	.	NM_022495	exon8	c.G2296A	p.G766S	GTTTACGGTGGTG	.	PASS	Atlas-SNP
SCFD2	152579	hgsc.bcm.edu	37	4	54011603	54011603	+	Silent	SNP	C	C	T	rs17082453	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	84	127	0	0.6	0	C|0.913;T|0.087	0.087	strong	.	SCFD2	78	.	NM_152540	exon5	c.G1458A	p.T486T	GTCTACCGTGAGC	.	PASS	Atlas-SNP
MC1R	4157	hgsc.bcm.edu	37	16	89985940	89985940	+	Missense_Mutation	SNP	G	G	A	rs2228479	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	49	101	0	0.408333	0	G|0.904;A|0.096	0.096	strong	.	MC1R	20	.	NM_002386	exon1	c.G274A	p.V92M	AGCAACGTGCTGG	.	PASS	Atlas-SNP
PLG	5340	hgsc.bcm.edu	37	6	161162406	161162406	+	Silent	SNP	T	T	C	rs4252170	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	374	169	365	2	0.451872	0.00547945	T|0.930;C|0.070	0.070	strong	PLG,NS,carcinoma,+2,1	PLG	150	1	NM_000301	exon17	c.T2082C	p.A694A	GGTCGCTGACCGG	.	scavenged	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	37	15	60747576	60747576	+	Silent	SNP	G	G	A	rs61753854	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	59	113	0	0.483607	0	G|0.998;A|0.002	0.002	strong	NARG2,NS,carcinoma,0,1	NARG2	82	1	NM_024611	exon7	c.C732T	p.D244D	TATATCGTCCTTT	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47847547	47847547	+	Silent	SNP	C	C	T	rs150882711	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	20	71	0	0.416667	0	C|0.999;T|0.001	0.001	strong	.	PCNT	283	.	NM_006031	exon34	c.C7332T	p.T2444T	GCCCACCGCGTGC	.	PASS	Atlas-SNP
INSC	387755	hgsc.bcm.edu	37	11	15243059	15243059	+	Missense_Mutation	SNP	G	G	A	rs17507577	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	121	231	0	0.535398	0	G|0.946;A|0.054	0.054	strong	.	INSC	104	.	NM_001031853	exon8	c.G997A	p.D333N	CTGACCGACAACA	.	PASS	Atlas-SNP
TUBD1	51174	hgsc.bcm.edu	37	17	57963537	57963537	+	Missense_Mutation	SNP	A	A	G	rs1292053	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	66	143	0	0.511628	0	A|0.522;G|0.478	0.478	strong	TUBD1,NS,carcinoma,0,1	TUBD1	38	1	NM_016261	exon3	c.T227C	p.M76T	GACAGCATTTGAT	.	PASS	Atlas-SNP
KRT33B	3884	hgsc.bcm.edu	37	17	39521248	39521248	+	Missense_Mutation	SNP	A	A	C	rs71373411	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	70	138	0	0.526316	0	A|0.853;C|0.147	0.147	strong	.	KRT33B	46	.	NM_002279	exon6	c.T880G	p.Y294D	GAGAGTATCGCTG	.	PASS	Atlas-SNP
NPSR1	387129	hgsc.bcm.edu	37	7	34874038	34874038	+	Missense_Mutation	SNP	C	C	G	rs727162	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	95	213	0	0.477387	0	C|0.744;G|0.256	0.256	strong	.	NPSR1	134	.	NM_207172	exon6	c.C723G	p.S241R	TAAAAGCAAAACC	.	PASS	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	37	6	168349011	168349011	+	Silent	SNP	C	C	T	rs9364371	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	48	100	0	0.470588	0	C|0.779;T|0.221	0.221	strong	MLLT4,NS,carcinoma,0,1	MLLT4	351	1	NM_001040000	exon28	c.C3663T	p.I1221I	CCCCATCCCCACT	.	PASS	Atlas-SNP
GALNT8	26290	hgsc.bcm.edu	37	12	4835882	4835882	+	Silent	SNP	T	T	G	rs2286578	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	39	75	0	0.609375	0	T|0.649;G|0.351	0.351	strong	.	GALNT8	89	.	NM_017417	exon2	c.T396G	p.L132L	GGATCTTTCTGAG	.	PASS	Atlas-SNP
PZP	5858	hgsc.bcm.edu	37	12	9346792	9346792	+	Missense_Mutation	SNP	G	G	C	rs12230214	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	129	159	0	0.59447	0	G|0.735;C|0.265	0.265	strong	.	PZP	422	.	NM_002864	exon11	c.C1135G	p.L379V	AGAAGAGTTTATT	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124418846	124418846	+	Silent	SNP	C	C	T	rs2289427	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	52	84	0	0.577778	0	C|0.844;T|0.156	0.156	strong	.	KALRN	556	.	NM_001024660	exon56	c.C7962T	p.S2654S	TCCCAGCGAGCCC	.	PASS	Atlas-SNP
TFEB	7942	hgsc.bcm.edu	37	6	41658889	41658889	+	Silent	SNP	C	C	T	rs1015149	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	35	57	0	0.5	0	C|0.516;T|0.484	0.484	strong	TFEB,rectum,carcinoma,0,1	TFEB	37	1	NM_001167827	exon2	c.G105A	p.Q35Q	CTCCCGCTGCTCC	.	PASS	Atlas-SNP
KIF9	64147	hgsc.bcm.edu	37	3	47282303	47282303	+	Missense_Mutation	SNP	G	G	A	rs2276853	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	191	214	2	0.994792	0.00934579	G|0.440;A|0.560	0.560	strong	KIF9,NS,carcinoma,0,1	KIF9	59	1	NM_182902	exon17	c.C1912T	p.R638W	TCTCCCGTAGTGA	.	PASS	Atlas-SNP
EXOC6B	23233	hgsc.bcm.edu	37	2	72707874	72707874	+	Silent	SNP	A	A	G	rs653220	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	27	60	0	0.5	0	A|0.639;G|0.361	0.361	strong	.	EXOC6B	93	.	NM_015189	exon17	c.T1671C	p.V557V	AATCTGAACAAGC	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91671124	91671124	+	Missense_Mutation	SNP	G	G	A	rs2295524	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	52	93	0	0.485981	0	G|0.835;A|0.165	0.165	strong	.	C14orf159	57	.	NM_001102368	exon12	c.G1519A	p.D507N	CACGGGGATGTCA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105407031	105407031	+	Silent	SNP	A	A	G	rs11623422	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	49	0	1	0	A|0.459;G|0.541	0.541	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.T14757C	p.S4919S	GCCCTGAGACACA	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	37	4	13604182	13604182	+	Missense_Mutation	SNP	T	T	C	rs17745676	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	88	235	0	0.470588	0	T|0.855;C|0.145	0.145	strong	.	.	.	.	NM_148894	exon10	c.A4342G	p.T1448A	TTTCTGTATTCAG	.	PASS	Atlas-SNP
BPIFA3	128861	hgsc.bcm.edu	37	20	31805464	31805464	+	Missense_Mutation	SNP	C	C	A	rs17124391	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	46	101	0	0.438095	0	C|0.984;A|0.016	0.016	strong	.	.	.	.	NM_178466	exon1	c.C122A	p.A41E	CCCTGGCAAGAAG	.	PASS	Atlas-SNP
KCNK6	9424	hgsc.bcm.edu	37	19	38817876	38817876	+	Missense_Mutation	SNP	G	G	A	rs34989303	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	40	77	0	0.487805	0	G|0.865;A|0.135	0.135	strong	.	KCNK6	37	.	NM_004823	exon3	c.G775A	p.V259M	CGCCACGTGTCCG	.	PASS	Atlas-SNP
TGS1	96764	hgsc.bcm.edu	37	8	56708701	56708701	+	Missense_Mutation	SNP	T	T	C	rs10100659	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	37	80	0	0.552239	0	T|0.847;C|0.153	0.153	strong	.	TGS1	66	.	NM_024831	exon7	c.T1532C	p.I511T	GCAAAATTCTGAG	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536550	88536550	+	Silent	SNP	T	T	C	rs145589857	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	115	197	0	0.542453	0	.	.	weak	DSPP,NS,carcinoma,0,1	DSPP	174	1	NM_014208	exon5	c.T2736C	p.S912S	CAGCAGTGACAGC	.	PASS	Atlas-SNP
GLYATL2	219970	hgsc.bcm.edu	37	11	58602309	58602309	+	Missense_Mutation	SNP	C	C	T	rs11229651	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	41	91	0	0.482353	0	C|0.732;T|0.268	0.268	strong	GLYATL2,NS,carcinoma,0,1	GLYATL2	40	1	NM_145016	exon6	c.G478A	p.E160K	TTCCTTCCCTGTG	.	PASS	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	37	5	163266	163266	+	Missense_Mutation	SNP	C	C	G	rs3810867	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	46	87	0	0.396552	0	C|0.689;G|0.311	0.311	strong	.	PLEKHG4B	167	.	NM_052909	exon11	c.C2011G	p.R671G	ACCCTGCGCCCAG	.	PASS	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55541513	55541513	+	Missense_Mutation	SNP	T	T	C	rs414352	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	93	140	0	0.989362	0	C|0.269;N|0.000	0.269	strong	.	RP1	429	.	NM_006269	exon4	c.T5071C	p.S1691P	AGTTCATCTATGT	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187518874	187518874	+	Silent	SNP	G	G	A	rs116628547	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	81	158	0	0.55102	0	G|0.995;A|0.005	0.005	strong	.	FAT1	500	.	NM_005245	exon24	c.C12330T	p.G4110G	AACGGCGCCATCC	.	PASS	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	37	17	20108184	20108184	+	Missense_Mutation	SNP	C	C	G	rs9908032	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	40	66	0	0.506329	0	C|0.883;G|0.117	0.117	strong	.	SPECC1	100	.	NM_001033553	exon4	c.C822G	p.S274R	CAGCAGCTGCCCA	.	PASS	Atlas-SNP
RBAK-LOC389458	0	hgsc.bcm.edu	37	7	5096958	5096958	+	Silent	SNP	T	T	C	rs11975068	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	113	244	0	0.559406	0	T|0.756;C|0.244	0.244	strong	RBAK_ENST00000396912,NS,carcinoma,0,1	.	.	1	NM_001204513	exon3	c.T48C	p.D16D	TGTGGATTTCACC	.	PASS	Atlas-SNP
ORC4	5000	hgsc.bcm.edu	37	2	148716428	148716428	+	Missense_Mutation	SNP	T	T	C	rs2307394	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	265	133	252	0	0.501887	0	T|0.653;C|0.346	0.346	strong	.	ORC4	40	.	NM_002552	exon5	c.A233G	p.N78S	GCATGATTTATTA	.	PASS	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	37	1	24995933	24995933	+	Missense_Mutation	SNP	C	C	T	rs149689871	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	55	115	0	0.458333	0	C|1.000;T|0.000	0.000	weak	.	SRRM1	81	.	NM_005839	exon14	c.C2059T	p.R687W	TCACCACGGCCTC	.	PASS	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	37	4	89380540	89380540	+	Missense_Mutation	SNP	A	A	G	rs75070724	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	490	258	483	0	0.526531	0	A|0.998;G|0.002	0.002	strong	.	HERC5	114	.	NM_016323	exon2	c.A308G	p.D103G	CCGTGGACCAAGG	.	PASS	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	37	1	113236681	113236681	+	Silent	SNP	C	C	T	rs3748656	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	86	121	1	0.534162	0.00826446	C|0.752;T|0.248	0.248	strong	MOV10,NS,carcinoma,+1,1	MOV10	74	1	NM_020963	exon8	c.C1182T	p.G394G	ACGGGGCGACCAC	.	scavenged	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	37	19	51919949	51919949	+	Missense_Mutation	SNP	G	G	A	rs9304711	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	277	127	244	0	0.458484	0	G|0.682;A|0.318	0.318	strong	.	SIGLEC10	112	.	NM_001171157	exon3	c.C677T	p.A226V	CTCTGTGCGCTCA	.	PASS	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	37	22	40417571	40417571	+	Missense_Mutation	SNP	G	G	A	rs35823589	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	10	17	0	0.5	0	G|0.955;A|0.045	0.045	strong	.	FAM83F	29	.	NM_138435	exon4	c.G1057A	p.G353S	GCGGGCGGCAACC	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152084221	152084221	+	Missense_Mutation	SNP	A	A	C	rs202112040		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	20	148	0	0.110497	0	.	.	weak	.	TCHH	275	.	NM_007113	exon3	c.T1472G	p.L491R	TCCTCGAGCTTCA	.	PASS	Atlas-SNP
OR8U1	219417	hgsc.bcm.edu	37	11	56143424	56143424	+	Missense_Mutation	SNP	A	A	G	rs12788990	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	26	59	0	0.490566	0	A|0.893;G|0.107	0.107	strong	OR8U1,NS,carcinoma,0,1	OR8U1	59	1	NM_001005204	exon1	c.A325G	p.I109V	TTCATGATATCAG	.	PASS	Atlas-SNP
PCNXL4	64430	hgsc.bcm.edu	37	14	60591829	60591829	+	Silent	SNP	T	T	C	rs308990	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	307	156	296	0	0.508143	0	T|0.723;C|0.277	0.277	strong	.	.	.	.	NM_022495	exon8	c.T2238C	p.F746F	TTATTTTAGTTTA	.	PASS	Atlas-SNP
ACHE	43	hgsc.bcm.edu	37	7	100490797	100490797	+	Missense_Mutation	SNP	G	G	T	rs1799805	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	44	75	0	0.5	0	G|0.967;T|0.033	0.033	strong	.	ACHE	80	.	NM_000665	exon2	c.C1057A	p.H353N	GGCCGTGGAAGTC	.	PASS	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240981487	240981487	+	Missense_Mutation	SNP	A	A	G	rs60617721	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	63	60	0	0.954545	0	A|0.695;G|0.305	0.305	strong	PRR21,rectum,carcinoma,0,2	PRR21	53	2	NM_001080835	exon1	c.T913C	p.C305R	AGAGGCATGGACG	.	PASS	Atlas-SNP
CASQ2	845	hgsc.bcm.edu	37	1	116243877	116243877	+	Silent	SNP	G	G	A	rs7413162	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	322	143	313	0	0.444099	0	G|0.586;A|0.414	0.414	strong	.	CASQ2	54	.	NM_001232	exon11	c.C1185T	p.D395D	ATCATCGTCATCA	.	PASS	Atlas-SNP
PIGF	5281	hgsc.bcm.edu	37	2	46839477	46839477	+	Silent	SNP	T	T	C	rs1824050	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	48	93	0	0.444444	0	T|0.798;C|0.202	0.202	strong	.	PIGF	9	.	NM_002643	exon4	c.A327G	p.A109A	TTCCAATGCCAAC	.	PASS	Atlas-SNP
OR10G7	390265	hgsc.bcm.edu	37	11	123909671	123909671	+	Missense_Mutation	SNP	G	G	A	rs11827843	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	104	244	0	0.481481	0	G|0.939;A|0.061	0.061	strong	.	OR10G7	103	.	NM_001004463	exon1	c.C38T	p.T13M	AGGCCCGTGAGGA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179395958	179395958	+	Silent	SNP	T	T	C	rs3813250	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	328	155	305	0	0.472561	0	T|0.562;C|0.438	0.438	strong	.	TTN	18412	.	NM_001267550	exon358	c.A105384G	p.A35128A	TCTTGCTGCCAAA	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39580559	39580559	+	Missense_Mutation	SNP	T	T	A	rs9916475	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	47	133	0	0.415929	0	T|0.606;A|0.394	0.394	strong	.	KRT37	61	.	NM_003770	exon1	c.A217T	p.S73C	TGTGACTGGTTGG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306347	1306347	+	Silent	SNP	G	G	C	rs2005937	bycluster;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	12	79	0	0.171429	0	G|1.000	.	weak	TPSD1,rectum,carcinoma,+1,4	TPSD1	47	4	NM_012217	exon1	c.G66C	p.P22P	GAGCCCGGCCTAC	.	scavenged	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	37	19	22575777	22575777	+	Missense_Mutation	SNP	T	T	C	rs200167484	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	15	49	0	0.227273	0	C|0.005;G|0.039;T|0.955	0.005	strong	.	ZNF98	230	.	NM_001098626	exon4	c.A260G	p.Y87C	TAAGAATATACAA	.	PASS	Atlas-SNP
MANEA	79694	hgsc.bcm.edu	37	6	96034612	96034612	+	Silent	SNP	G	G	A	rs62417813	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	27	50	0	0.442623	0	G|0.929;A|0.070	0.070	strong	.	MANEA	58	.	NM_024641	exon2	c.G297A	p.L99L	ACCTCTGAACAAT	.	PASS	Atlas-SNP
TNIK	23043	hgsc.bcm.edu	37	3	170811667	170811667	+	Silent	SNP	G	G	A	rs16855789	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	59	126	0	0.479675	0	G|0.908;A|0.092	0.092	strong	.	TNIK	313	.	NM_015028	exon23	c.C2682T	p.S894S	ACTGCCGCTGAAA	.	PASS	Atlas-SNP
CCDC38	120935	hgsc.bcm.edu	37	12	96266035	96266035	+	Silent	SNP	T	T	C	rs2117914	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	87	136	0	0.494318	0	T|0.828;C|0.172	0.172	strong	.	CCDC38	45	.	NM_182496	exon14	c.A1482G	p.Q494Q	GTACTTTTGCCGC	.	PASS	Atlas-SNP
TSR1	55720	hgsc.bcm.edu	37	17	2238675	2238675	+	Silent	SNP	A	A	G	rs61743762	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	42	69	0	0.538462	0	A|0.974;G|0.026	0.026	strong	.	TSR1	57	.	NM_018128	exon4	c.T435C	p.V145V	TAACACAACGTGC	.	PASS	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22155783	22155783	+	Missense_Mutation	SNP	C	C	T	rs199604702	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	4	31	0	0.190476	0	.	.	weak	ZNF208_ENST00000428290,rectum,carcinoma,0,3	ZNF208	817	3	NM_007153	exon4	c.G2053A	p.V685I	GAATTACCTTATG	.	scavenged	Atlas-SNP
SEC14L5	9717	hgsc.bcm.edu	37	16	5046919	5046919	+	Missense_Mutation	SNP	C	C	T	rs199609540	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	65	161	1	0.474453	0.00621118	C|0.996;T|0.004	0.004	strong	SEC14L5,NS,lymphoid_neoplasm,0,1	SEC14L5	79	1	NM_014692	exon8	c.C844T	p.R282W	AAGGCCCGGGAAA	.	scavenged	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53202183	53202183	+	Silent	SNP	C	C	G	rs7956809	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	37	80	0	0.513889	0	C|0.913;G|0.087	0.087	strong	.	KRT4	110	.	NM_002272	exon6	c.G1020C	p.S340S	GTCAACCGAGATC	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228537608	228537608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	59	78	0	0.556604	0	.	.	none	.	OBSCN	2142	.	NM_001271223	exon87	c.G21037A	p.V7013M	GTGCAGGTGGACC	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79095299	79095299	+	Missense_Mutation	SNP	A	A	G	rs115059007	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	100	170	1	0.609756	0.00588235	A|0.987;G|0.013	0.013	strong	.	CMYA5	643	.	NM_153610	exon13	c.A12070G	p.N4024D	TTCATCAACGCAG	.	PASS	Atlas-SNP
FAM90A1	55138	hgsc.bcm.edu	37	12	8377415	8377415	+	Missense_Mutation	SNP	C	C	T	rs200454993		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	7	20	0	0.170732	0	.	.	weak	FAM90A1,NS,carcinoma,0,2	FAM90A1	68	2	NM_018088	exon4	c.G14A	p.R5H	GGGTCACGACGTG	.	scavenged	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	37	20	56138648	56138648	+	Missense_Mutation	SNP	G	G	A	rs11552145	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	39	78	0	0.619048	0	G|0.881;A|0.119	0.119	strong	.	PCK1	95	.	NM_002591	exon6	c.G826A	p.E276K	GAGGGTGAGAAGA	.	PASS	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	37	18	47429022	47429022	+	Missense_Mutation	SNP	C	C	T	rs2298624	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	21	74	0	0.33871	0	C|0.861;N|0.000	.	strong	.	MYO5B	178	.	NM_001080467	exon21	c.G2753A	p.R918H	TTGAGACGTTTCA	.	PASS	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241835379	241835379	+	Silent	SNP	G	G	A	rs12105122	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	14	14	0	0.518519	0	G|0.494;A|0.506	0.506	strong	C2orf54,rectum,carcinoma,0,1	C2orf54	14	1	NM_001085437	exon1	c.C36T	p.A12A	CTGCACGGCCATG	.	PASS	Atlas-SNP
NUP62	23636	hgsc.bcm.edu	37	19	50412217	50412217	+	Missense_Mutation	SNP	C	C	G	rs1062798	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	29	81	0	0.42029	0	C|0.677;G|0.323	0.323	strong	NUP62,NS,carcinoma,0,2	NUP62	50	2	NM_153719	exon3	c.G848C	p.S283T	CTGCTGCTGGTGG	.	PASS	Atlas-SNP
ANK1	286	hgsc.bcm.edu	37	8	41559609	41559609	+	Silent	SNP	G	G	A	rs2304880	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	50	59	0	0.537634	0	G|0.820;A|0.180	0.180	strong	.	ANK1	497	.	NM_001142446	exon21	c.C2448T	p.T816T	CACGTCGGTGACA	.	PASS	Atlas-SNP
CALR3	125972	hgsc.bcm.edu	37	19	16593318	16593318	+	Silent	SNP	C	C	T	rs118131979	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	66	125	0	0.507692	0	C|0.990;T|0.010	0.010	strong	.	CALR3	41	.	NM_145046	exon7	c.G861A	p.T287T	ATACTGCGTCAAA	.	PASS	Atlas-SNP
TRIM22	10346	hgsc.bcm.edu	37	11	5719667	5719667	+	Silent	SNP	T	T	C	rs2291842	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	99	197	0	0.466981	0	T|0.726;C|0.274	0.274	strong	.	TRIM22	66	.	NM_006074	exon4	c.T642C	p.D214D	GCTGGATAACCTG	.	PASS	Atlas-SNP
DCXR	51181	hgsc.bcm.edu	37	17	79994600	79994600	+	Silent	SNP	C	C	T	rs61739740	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	35	74	0	0.454545	0	C|0.760;T|0.240	0.240	strong	.	DCXR	10	.	NM_016286	exon4	c.G345A	p.S115S	CACCTGCGACACC	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	37	4	48588742	48588742	+	Silent	SNP	C	C	T	rs34558821	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	36	70	0	0.529412	0	C|0.516;T|0.484	0.484	strong	.	FRYL	242	.	NM_015030	exon19	c.G1644A	p.G548G	TCTTTCCCCCCTG	.	PASS	Atlas-SNP
RSPO1	284654	hgsc.bcm.edu	37	1	38079517	38079517	+	Missense_Mutation	SNP	T	T	G	rs36043533	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	90	234	0	0.422535	0	T|0.954;G|0.046	0.046	strong	.	RSPO1	35	.	NM_001242908	exon6	c.A484C	p.K162Q	GCTGCTTCTTGGA	.	PASS	Atlas-SNP
NLRP8	126205	hgsc.bcm.edu	37	19	56467375	56467375	+	Missense_Mutation	SNP	C	C	T	rs41481648	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	78	167	0	0.445714	0	C|0.909;T|0.091	0.091	strong	.	NLRP8	225	.	NM_176811	exon3	c.C1951T	p.R651W	CTGAAGCGGTGTC	.	PASS	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38376103	38376103	+	Silent	SNP	A	A	G	rs73027454	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	31	48	0	0.54386	0	A|0.775;G|0.225	0.225	strong	.	WDR87	191	.	NM_031951	exon6	c.T8091C	p.F2697F	ATCCTTAAAATCC	.	PASS	Atlas-SNP
POLRMT	5442	hgsc.bcm.edu	37	19	621070	621070	+	Silent	SNP	G	G	A	rs77809401	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	35	59	0	0.466667	0	G|0.849;A|0.151	0.151	strong	.	POLRMT	91	.	NM_005035	exon10	c.C2628T	p.D876D	GGGTTGGTCCGCG	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2418031	2418031	+	Silent	SNP	C	C	T	rs11084939	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	29	61	0	0.376623	0	C|0.876;T|0.124	0.124	strong	.	TMPRSS9	79	.	NM_182973	exon12	c.C1947T	p.S649S	GGCGTCCGTGGGC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418166	105418166	+	Missense_Mutation	SNP	T	T	C	rs78116894	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	238	0	1	0	T|0.790;C|0.210	0.210	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.A3622G	p.T1208A	CAGTGGTCTTGAG	.	PASS	Atlas-SNP
ILDR1	286676	hgsc.bcm.edu	37	3	121712805	121712805	+	Missense_Mutation	SNP	G	G	C	rs3915061	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	17	30	0	0.515152	0	G|0.700;C|0.300	0.300	strong	.	ILDR1	120	.	NM_001199799	exon7	c.C791G	p.P264R	CTGGACGGCAGGG	.	PASS	Atlas-SNP
LRP3	4037	hgsc.bcm.edu	37	19	33696897	33696897	+	Silent	SNP	C	C	T	rs11084712	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	17	47	0	0.515152	0	C|0.769;T|0.231	0.231	strong	LRP3,rectum,carcinoma,0,2	LRP3	46	2	NM_002333	exon5	c.C1221T	p.G407G	CAGCGGCCGAGAC	.	PASS	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6903920	6903920	+	Missense_Mutation	SNP	A	A	G	rs443658	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	58	94	0	0.517857	0	T|0.001;G|0.397	0.397	strong	EMR1,NS,carcinoma,+1,1	EMR1	153	1	NM_001256253	exon7	c.A761G	p.N254S	CAAGCAATGGACA	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1088815	1088815	+	Silent	SNP	A	A	G	rs7103978	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	41	55	0	0.546667	0	A|0.939;G|0.061	0.061	strong	.	MUC2	614	.	NM_002457	exon26	c.A3600G	p.A1200A	TGGAGCATCGGTT	.	PASS	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	37	6	34003928	34003928	+	Silent	SNP	C	C	T	rs34858760	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	69	77	0	0.6	0	C|0.975;T|0.025	0.025	strong	.	GRM4	317	.	NM_000841	exon9	c.G1959A	p.S653S	GCGCAGCGAGCAG	.	PASS	Atlas-SNP
FCRLA	84824	hgsc.bcm.edu	37	1	161681780	161681780	+	Missense_Mutation	SNP	A	A	G	rs2275603	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	64	142	0	0.463768	0	A|0.595;G|0.405	0.405	strong	.	FCRLA	101	.	NM_001184866	exon5	c.A625G	p.S209G	GCAGGAAGCCCCA	.	PASS	Atlas-SNP
ITGAE	3682	hgsc.bcm.edu	37	17	3631241	3631241	+	Missense_Mutation	SNP	A	A	G	rs2976230	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	112	227	0	0.430769	0	A|0.678;G|0.322	0.322	strong	.	ITGAE	96	.	NM_002208	exon26	c.T3056C	p.V1019A	ACTGCTACAACCT	.	PASS	Atlas-SNP
BTNL8	79908	hgsc.bcm.edu	37	5	180338368	180338368	+	Missense_Mutation	SNP	A	A	G	rs2276995	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	108	243	0	0.48	0	A|0.529;G|0.471	0.471	strong	BTNL8,colon,carcinoma,-2,1	BTNL8	114	1	NM_001159708	exon3	c.A427G	p.T143A	TCCATCACGGGAT	.	PASS	Atlas-SNP
RAD51D	5892	hgsc.bcm.edu	37	17	33433487	33433487	+	Missense_Mutation	SNP	C	C	T	rs4796033	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	42	118	0	0.461538	0	C|0.903;T|0.097	0.097	strong	.	RAD51D	53	.	NM_001142571	exon6	c.G554A	p.R185Q	ATCCTCCGGAGAG	.	PASS	Atlas-SNP
SLC6A3	6531	hgsc.bcm.edu	37	5	1443151	1443151	+	Silent	SNP	G	G	A	rs6351	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	62	120	0	0.446043	0	G|0.992;A|0.008	0.008	strong	.	SLC6A3	102	.	NM_001044	exon2	c.C162T	p.P54P	CTCCACGGGGCTC	.	PASS	Atlas-SNP
KIF24	347240	hgsc.bcm.edu	37	9	34306410	34306410	+	Missense_Mutation	SNP	C	C	A	rs17350674	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	107	230	1	0.442149	0.00434783	C|0.891;A|0.109	0.109	strong	.	KIF24	64	.	NM_194313	exon3	c.G653T	p.W218L	TCAGTCCAAGGAT	.	PASS	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	37	2	18757501	18757501	+	Silent	SNP	G	G	C	rs3902946	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	356	354	323	1	0.994382	0.00309598	G|0.689;C|0.311	0.311	strong	.	NT5C1B	72	.	NM_001199087	exon9	c.C1509G	p.L503L	TTTGTCGAGCCCA	.	PASS	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	37	18	21891975	21891975	+	Silent	SNP	A	A	G	rs2337961	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	67	148	0	0.429487	0	A|0.731;G|0.269	0.269	strong	OSBPL1A,colon,carcinoma,0,1	OSBPL1A	94	1	NM_080597	exon13	c.T1065C	p.S355S	TGCAGCAGAAACC	.	PASS	Atlas-SNP
CABP5	56344	hgsc.bcm.edu	37	19	48537585	48537585	+	Missense_Mutation	SNP	A	A	G	rs3745746	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	48	87	0	0.470588	0	G|0.275;N|0.000	0.275	strong	.	CABP5	28	.	NM_019855	exon5	c.T383C	p.V128A	AGCTCCACCAGGG	.	PASS	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	37	9	33798075	33798075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	5	97	0	0.0431034	0	.	.	none	PRSS3_ENST00000361005,brain,glioma,0,3	PRSS3	79	3	NM_007343	exon3	c.T620C	p.F207S	TGAGCTTTGGTGG	.	scavenged	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140640703	140640703	+	Missense_Mutation	SNP	G	G	T	rs61747885	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	48	69	0	0.5	0	G|0.877;T|0.123	0.123	strong	.	MAML3	192	.	NM_018717	exon6	c.C3179A	p.P1060H	GCTGGGGGCTGGC	.	PASS	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2275734	2275734	+	Silent	SNP	C	C	G	rs3213712	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	69	152	0	0.396552	0	C|0.810;G|0.190	0.190	strong	SGSM2,colon,carcinoma,0,1	SGSM2	60	1	NM_014853	exon15	c.C1740G	p.S580S	GGCCTCCGCGGGC	.	PASS	Atlas-SNP
SSTR4	6754	hgsc.bcm.edu	37	20	23016819	23016819	+	Silent	SNP	C	C	T	rs141700474	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	24	40	0	0.40678	0	C|0.993;T|0.007	0.007	strong	.	SSTR4	83	.	NM_001052	exon1	c.C699T	p.L233L	CCTGCTCATCGTG	.	PASS	Atlas-SNP
ACSS1	84532	hgsc.bcm.edu	37	20	24994275	24994275	+	Silent	SNP	G	G	A	rs6115001	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	28	82	0	0.394366	0	G|0.909;A|0.091	0.091	strong	.	ACSS1	46	.	NM_001252677	exon10	c.C1476T	p.N492N	GGAGACGTTGCTG	.	PASS	Atlas-SNP
GPR128	84873	hgsc.bcm.edu	37	3	100368546	100368546	+	Missense_Mutation	SNP	A	A	G	rs61730367	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	44	120	0	0.453608	0	A|0.920;G|0.080	0.080	strong	.	GPR128	126	.	NM_032787	exon11	c.A1274G	p.K425R	CTTTCAAAAAGGA	.	PASS	Atlas-SNP
UGT2B28	54490	hgsc.bcm.edu	37	4	70160343	70160343	+	Missense_Mutation	SNP	G	G	C	rs72552705	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	38	83	0	0.345455	0	G|0.867;C|0.133	0.133	strong	.	UGT2B28	101	.	NM_053039	exon6	c.G1406C	p.C469S	TGATGTGCCACAA	.	PASS	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	37	10	52005153	52005153	+	Silent	SNP	A	A	G	rs7097319	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	51	153	0	0.356643	0	A|0.738;G|0.262	0.262	strong	ASAH2_ENST00000395526,NS,carcinoma,-1,2	ASAH2	69	2	NM_019893	exon2	c.T189C	p.A63A	TTGGGCAGCTGTG	.	PASS	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	37	11	102650424	102650424	+	Missense_Mutation	SNP	C	C	T	rs486055	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	49	132	0	0.426087	0	C|0.916;T|0.084	0.084	strong	.	MMP10	44	.	NM_002425	exon2	c.G158A	p.R53K	TCCTTTCTTCTAA	.	PASS	Atlas-SNP
PTCH2	8643	hgsc.bcm.edu	37	1	45292926	45292926	+	Silent	SNP	C	C	G	rs111471526	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	37	87	0	0.402174	0	C|0.988;G|0.012	0.012	strong	.	PTCH2	96	.	NM_001166292	exon16	c.G2427C	p.S809S	GCGGTACGAGTGG	.	PASS	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	37	6	33643558	33643558	+	Silent	SNP	G	G	A	rs2229637	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	76	157	0	0.503311	0	G|0.786;A|0.214	0.214	strong	ITPR3_ENST00000374316,NS,carcinoma,0,2	ITPR3	409	2	NM_002224	exon25	c.G3207A	p.P1069P	TGCGCCGCTGGTC	.	PASS	Atlas-SNP
GNG8	94235	hgsc.bcm.edu	37	19	47137459	47137459	+	Silent	SNP	C	C	T	rs12974613	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	34	78	0	0.5	0	C|0.728;T|0.272	0.272	strong	.	GNG8	2	.	NM_033258	exon2	c.G87A	p.V29V	CTGCGACACCTGC	.	PASS	Atlas-SNP
GGTLC2	91227	hgsc.bcm.edu	37	22	22988911	22988911	+	Silent	SNP	G	G	A	rs9612135	bycluster;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	15	139	0	0.101351	0	G|0.631;A|0.369	0.369	strong	GGTLC2,NS,carcinoma,0,1	GGTLC2	20	1	NM_199127	exon1	c.G96A	p.P32P	CACGCCGGTTGAT	.	scavenged	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	37	2	185801917	185801917	+	Silent	SNP	A	A	G	rs728534	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	38	72	0	0.426966	0	A|0.840;G|0.160	0.160	strong	.	ZNF804A	322	.	NM_194250	exon4	c.A1794G	p.K598K	GAAAAAAAGAAAA	.	PASS	Atlas-SNP
BTBD16	118663	hgsc.bcm.edu	37	10	124089075	124089075	+	Missense_Mutation	SNP	G	G	A	rs986178	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	24	46	0	0.489796	0	G|0.902;A|0.098	0.098	strong	BTBD16,NS,carcinoma,0,1	BTBD16	44	1	NM_144587	exon11	c.G992A	p.G331D	TGCACGGCATCAC	.	PASS	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	37	6	43188940	43188940	+	Silent	SNP	C	C	T	rs6917902	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	62	162	0	0.516667	0	C|0.767;T|0.233	0.233	strong	.	CUL9	248	.	NM_015089	exon34	c.C6633T	p.D2211D	GGTCGACGACGGT	.	PASS	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	37	5	156479426	156479426	+	Missense_Mutation	SNP	T	T	C	rs12522248	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	348	159	346	0	0.456897	0	T|0.756;C|0.244	0.244	strong	.	HAVCR1	84	.	NM_001099414	exon4	c.A619G	p.T207A	AGACAGTTGTTGT	.	PASS	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	37	8	142228909	142228909	+	Missense_Mutation	SNP	G	G	A	rs753778	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	56	74	0	0.528302	0	G|0.657;A|0.343	0.343	strong	.	SLC45A4	71	.	NM_001080431	exon4	c.C677T	p.P226L	CCGTGCGGCTCGC	.	PASS	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	37	6	106547372	106547372	+	Missense_Mutation	SNP	C	C	G	rs811925	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	65	128	0	0.460993	0	C|0.843;G|0.157	0.157	strong	.	PRDM1	195	.	NM_001198	exon4	c.C609G	p.D203E	TCGGGACTTTGCA	.	PASS	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	37	4	86844835	86844835	+	Silent	SNP	A	A	G	rs6824722	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	61	114	0	0.54955	0	A|0.669;G|0.331	0.331	strong	.	ARHGAP24	116	.	NM_001025616	exon4	c.A303G	p.E101E	TCATGAAAGCTAC	.	PASS	Atlas-SNP
NOP56	10528	hgsc.bcm.edu	37	20	2633936	2633936	+	Silent	SNP	T	T	C	rs2073194	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	188	199	1	1	0.00502513	T|0.163;G|0.000;C|0.837;A|0.000	0.837	strong	.	NOP56	73	.	NM_006392	exon3	c.T105C	p.S35S	GGAGTCTGTGCTC	.	PASS	Atlas-SNP
OR5M11	219487	hgsc.bcm.edu	37	11	56310497	56310497	+	Silent	SNP	C	C	T	rs72913727	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	41	72	0	0.539474	0	C|0.949;T|0.051	0.051	strong	OR5M11,right_upper_lobe,carcinoma,-1,1	OR5M11	60	1	NM_001005245	exon1	c.G237A	p.P79P	CATCTGCGGGGTT	.	PASS	Atlas-SNP
CRNN	49860	hgsc.bcm.edu	37	1	152382120	152382120	+	Missense_Mutation	SNP	C	C	T	rs3829868	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	56	105	0	0.470588	0	C|0.821;T|0.179	0.179	strong	.	CRNN	78	.	NM_016190	exon3	c.G1438A	p.G480S	TGATGCCTCGCTT	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91636532	91636532	+	Missense_Mutation	SNP	C	C	T	rs4900072	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	24	35	0	0.444444	0	C|0.773;T|0.227	0.227	strong	.	C14orf159	57	.	NM_001102368	exon5	c.C443T	p.A148V	GCCAGGCGGGTGC	.	PASS	Atlas-SNP
CCDC85A	114800	hgsc.bcm.edu	37	2	56420006	56420006	+	Missense_Mutation	SNP	A	A	T	rs60028731	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	44	84	0	0.483516	0	A|0.919;T|0.081	0.081	strong	.	CCDC85A	70	.	NM_001080433	exon2	c.A671T	p.H224L	CGGACCACCACAA	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52777580	52777580	+	Silent	SNP	A	A	C	rs1613929	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	38	95	0	0.395833	0	A|0.686;C|0.314	0.314	strong	.	KRT84	61	.	NM_033045	exon2	c.T549G	p.V183V	GAACCGAACCTAA	.	PASS	Atlas-SNP
ZNF682	91120	hgsc.bcm.edu	37	19	20133846	20133846	+	Missense_Mutation	SNP	C	C	T	rs7255165	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	62	180	0	0.416107	0	C|0.801;T|0.199	0.199	strong	.	ZNF682	51	.	NM_033196	exon3	c.G193A	p.V65M	TCTTCACATTCCA	.	PASS	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61538601	61538601	+	Silent	SNP	C	C	T	rs34820000	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	118	239	0	0.49789	0	C|0.924;T|0.076	0.076	strong	DIDO1_ENST00000370371,NS,carcinoma,-1,2	DIDO1	321	2	NM_080797	exon5	c.G1272A	p.A424A	CATTGTCGCTGCG	.	PASS	Atlas-SNP
FAM214A	56204	hgsc.bcm.edu	37	15	52905882	52905882	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	32	74	0	0.329897	0	.	.	none	.	.	.	.	NM_019600	exon3	c.C189T	p.D63D	CAGCTTGTCACTA	.	PASS	Atlas-SNP
EMC1	23065	hgsc.bcm.edu	37	1	19565338	19565338	+	Missense_Mutation	SNP	C	C	T	rs709682	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	29	109	0	0.408451	0	C|0.816;T|0.184	0.184	strong	KIAA0090,NS,carcinoma,0,1	.	.	1	NM_001271428	exon10	c.G1040A	p.S347N	TCAGAACTGCTAC	.	PASS	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	37	3	127379270	127379270	+	Silent	SNP	C	C	T	rs920232	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	91	141	0	0.56875	0	C|0.837;T|0.163	0.163	strong	.	PODXL2	53	.	NM_015720	exon3	c.C399T	p.T133T	AGACACCAGCCAG	.	PASS	Atlas-SNP
TIMM13	26517	hgsc.bcm.edu	37	19	2427266	2427266	+	Silent	SNP	G	G	A	rs968688	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	19	48	0	0.333333	0	G|0.910;T|0.000	.	strong	.	TIMM13	7	.	NM_012458	exon2	c.C177T	p.D59D	GGAGTTGTCCAGG	.	PASS	Atlas-SNP
CWC27	10283	hgsc.bcm.edu	37	5	64267595	64267595	+	Silent	SNP	T	T	C	rs2278351	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	102	148	0	0.515152	0	T|0.708;C|0.292	0.292	strong	.	CWC27	47	.	NM_005869	exon12	c.T1108C	p.L370L	GAAGCTTTGAGGA	.	PASS	Atlas-SNP
GTF3C4	9329	hgsc.bcm.edu	37	9	135554566	135554566	+	Silent	SNP	G	G	A	rs371169	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	92	191	0	0.547619	0	G|0.531;A|0.469	0.469	strong	GTF3C4,colon,carcinoma,0,1	GTF3C4	53	1	NM_012204	exon2	c.G1560A	p.E520E	TGAAGAGGCAGCT	.	PASS	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	37	8	144873475	144873475	+	Missense_Mutation	SNP	G	G	A	rs146664605	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	76	139	0	0.490323	0	G|0.990;A|0.010	0.010	strong	.	SCRIB	192	.	NM_182706	exon37	c.C4826T	p.P1609L	TCCTGCGGGCCTG	.	PASS	Atlas-SNP
SSTR5	6755	hgsc.bcm.edu	37	16	1129872	1129872	+	Missense_Mutation	SNP	C	C	T	rs169068	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	27	25	0	1	0	C|0.484;T|0.516	0.516	strong	.	SSTR5	36	.	NM_001172560	exon2	c.C1004T	p.P335L	CGGAGCCGCGTCC	.	PASS	Atlas-SNP
KRTAP10-10	353333	hgsc.bcm.edu	37	21	46058060	46058060	+	Silent	SNP	C	C	T	rs74695406		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	80	154	0	0.490798	0	T|1.000;|0.000	1.000	weak	.	KRTAP10-10	37	.	NM_181688	exon1	c.C726T	p.S242S	CTACAGCCTCTGC	.	PASS	Atlas-SNP
SYNPR	132204	hgsc.bcm.edu	37	3	63600905	63600905	+	Silent	SNP	T	T	C	rs150251873	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	103	225	0	0.553763	0	T|0.998;C|0.002	0.002	strong	.	SYNPR	38	.	NM_001130003	exon6	c.T606C	p.F202F	GGTCTTTGGATTC	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207173390	207173390	+	Missense_Mutation	SNP	G	G	A	rs79484112	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	11	42	0	0.354839	0	G|0.981;A|0.019	0.019	strong	.	ZDBF2	531	.	NM_020923	exon5	c.G4138A	p.E1380K	GCAGATGAGCTTC	.	PASS	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	37	19	41038574	41038574	+	Missense_Mutation	SNP	G	G	A	rs814501	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	35	74	0	0.546875	0	G|0.572;A|0.428	0.428	strong	.	SPTBN4	213	.	NM_020971	exon19	c.G3991A	p.G1331S	CGGGATGGCACGC	.	PASS	Atlas-SNP
OR10A6	390093	hgsc.bcm.edu	37	11	7949707	7949707	+	Missense_Mutation	SNP	A	A	G	rs111488559	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	63	160	0	0.463235	0	A|0.976;G|0.024	0.024	strong	.	OR10A6	49	.	NM_001004461	exon1	c.T503C	p.F168S	CCACAAAAGGGAA	.	PASS	Atlas-SNP
ERCC1	2067	hgsc.bcm.edu	37	19	45922389	45922389	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	27	52	0	0.574468	0	.	.	none	.	ERCC1	46	.	NM_001983	exon5	c.C492G	p.F164L	CAAGGCGAAGTTC	.	PASS	Atlas-SNP
TAF5L	27097	hgsc.bcm.edu	37	1	229738170	229738170	+	Silent	SNP	T	T	G	rs3753886	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	80	160	0	0.45977	0	T|0.456;G|0.544	0.544	strong	.	TAF5L	76	.	NM_001025247	exon4	c.A744C	p.R248R	CTTGACTCGCTTA	.	PASS	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	37	16	68893953	68893953	+	Silent	SNP	T	T	C	rs4597312	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	88	177	0	0.44898	0	T|0.895;C|0.105	0.105	strong	.	.	.	.	NM_024562	exon2	c.T261C	p.S87S	AAACTCTGTGGAT	.	PASS	Atlas-SNP
RP1	6101	hgsc.bcm.edu	37	8	55541617	55541617	+	Silent	SNP	A	A	G	rs441800	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	60	131	0	0.491803	0	A|0.776;G|0.224	0.224	strong	.	RP1	429	.	NM_006269	exon4	c.A5175G	p.Q1725Q	AAAACAAAATGAT	.	PASS	Atlas-SNP
C1RL	51279	hgsc.bcm.edu	37	12	7249598	7249598	+	Missense_Mutation	SNP	T	T	C	rs3742089	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	66	150	0	0.496241	0	T|0.606;C|0.393	0.393	strong	.	C1RL	39	.	NM_016546	exon6	c.A853G	p.I285V	GGTAGATGGTGTG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179454394	179454394	+	Silent	SNP	A	A	G	rs1560221	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	104	181	0	0.509804	0	A|0.558;G|0.442	0.442	strong	.	TTN	18412	.	NM_001267550	exon304	c.T62058C	p.Y20686Y	CTTTAGATAGACA	.	PASS	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33357262	33357262	+	Missense_Mutation	SNP	A	A	G	rs2306277	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	161	188	1	1	0.00531915	G|0.444;N|0.000	0.444	strong	FMN1_ENST00000334528,NS,carcinoma,0,1	FMN1	174	1	NM_001103184	exon2	c.T1388C	p.L463P	TCAGTCAGGCTGT	.	PASS	Atlas-SNP
APOBEC3F	200316	hgsc.bcm.edu	37	22	39441197	39441197	+	Silent	SNP	G	G	A	rs200983508	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	4	117	5	0.0296296	0.042735	G|0.998;A|0.002	0.002	strong	APOBEC3F,NS,carcinoma,0,1	APOBEC3F	37	1	NM_145298	exon3	c.G423A	p.G141G	GGCAGGGGCCCGC	.	scavenged	Atlas-SNP
GLTPD2	388323	hgsc.bcm.edu	37	17	4692559	4692559	+	Missense_Mutation	SNP	G	G	T	rs2304969	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	23	42	0	0.396552	0	G|0.753;T|0.247	0.247	strong	.	GLTPD2	15	.	NM_001014985	exon2	c.G145T	p.V49F	CCCTGCGTTCCAG	.	PASS	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	37	9	19346710	19346710	+	Missense_Mutation	SNP	A	A	G	rs17818730	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	61	103	0	0.5	0	A|0.940;G|0.060	0.060	strong	.	DENND4C	120	.	NM_017925	exon22	c.A3796G	p.T1266A	GGCATGACTACTG	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78598891	78598891	+	Silent	SNP	G	G	A	rs9971904	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	73	89	0	1	0	G|0.427;A|0.573	0.573	strong	.	NAV3	506	.	NM_014903	exon38	c.G6945A	p.P2315P	CATTCCGCAAACT	.	PASS	Atlas-SNP
INPP4A	3631	hgsc.bcm.edu	37	2	99172243	99172243	+	Silent	SNP	C	C	T	rs41486345	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	29	55	0	0.517857	0	C|0.954;T|0.046	0.046	strong	.	INPP4A	205	.	NM_001134224	exon17	c.C1809T	p.S603S	GCCCTCCACTGCA	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	8	87	1	0.0747664	0.0114943	G|0.500;C|0.500	0.500	weak	KRTAP4-11,NS,carcinoma,0,7	KRTAP4-11	94	7	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	scavenged	Atlas-SNP
HOXC10	3226	hgsc.bcm.edu	37	12	54379670	54379670	+	Silent	SNP	C	C	T	rs4564384	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	45	82	0	0.420561	0	T|0.070;G|0.000;C|0.929	0.070	strong	.	HOXC10	42	.	NM_017409	exon1	c.C627T	p.P209P	GACCCCCAGCCCC	.	PASS	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	37	9	139328551	139328551	+	Silent	SNP	T	T	C	rs10870199	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	14	31	0	0.56	0	T|0.894;C|0.106	0.106	strong	.	INPP5E	18	.	NM_019892	exon3	c.A972G	p.P324P	CTCGGCTGGGAGC	.	PASS	Atlas-SNP
ZNF492	57615	hgsc.bcm.edu	37	19	22846601	22846601	+	Splice_Site	SNP	G	G	T	rs71355985	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	19	43	0	0.38	0	G|0.955;T|0.045	0.045	strong	.	ZNF492	129	.	NM_020855	exon4	c.131-1G>T	.	CTTTCAGTTGTAT	.	PASS	Atlas-SNP
SSRP1	6749	hgsc.bcm.edu	37	11	57100225	57100225	+	Silent	SNP	A	A	G	rs2230650	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	37	141	0	0.381443	0	A|0.978;G|0.022	0.022	strong	.	SSRP1	75	.	NM_003146	exon6	c.T642C	p.Y214Y	AATGTCATAACGA	.	PASS	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140993642	140993642	+	Missense_Mutation	SNP	C	C	T	rs176037	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	192	227	1	0.909953	0.00440529	C|0.647;T|0.353	0.353	strong	.	MAGEC1	317	.	NM_005462	exon4	c.C452T	p.T151I	AGAGTACTCAAAG	.	PASS	Atlas-SNP
SLC2A8	29988	hgsc.bcm.edu	37	9	130165973	130165973	+	Missense_Mutation	SNP	T	T	C	rs34064803	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	38	75	0	0.413043	0	T|0.928;C|0.072	0.072	strong	.	SLC2A8	27	.	NM_014580	exon6	c.T758C	p.I253T	CCGGCATCTACAA	.	PASS	Atlas-SNP
LSS	4047	hgsc.bcm.edu	37	21	47611799	47611799	+	Missense_Mutation	SNP	G	G	A	rs17293705	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	25	47	0	0.431034	0	G|0.986;A|0.014	0.014	strong	.	LSS	50	.	NM_001001438	exon21	c.C2063T	p.P688L	ACCTGCGGCCAGT	.	PASS	Atlas-SNP
CLEC4F	165530	hgsc.bcm.edu	37	2	71043461	71043461	+	Missense_Mutation	SNP	C	C	T	rs722896	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	107	185	0	0.521951	0	C|0.704;T|0.296	0.296	strong	.	CLEC4F	95	.	NM_173535	exon4	c.G1052A	p.R351H	TCCAGACGGCCAT	.	PASS	Atlas-SNP
ATP5J2-PTCD1	100526740	hgsc.bcm.edu	37	7	99032593	99032593	+	Silent	SNP	G	G	T	rs11555142	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	54	86	0	0.469565	0	G|0.892;T|0.108	0.108	strong	.	.	.	.	NM_001198879	exon3	c.C420A	p.T140T	AGAGAGGGTCCCA	.	PASS	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	37	8	105263979	105263979	+	Silent	SNP	C	C	T	rs10461	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	70	143	0	0.472973	0	C|0.553;T|0.447	0.447	strong	.	RIMS2	1357	.	NM_001100117	exon24	c.C3981T	p.A1327A	CTTGGCCCCTCTG	.	PASS	Atlas-SNP
RNASE8	122665	hgsc.bcm.edu	37	14	21526079	21526079	+	Missense_Mutation	SNP	C	C	T	rs12437266	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	64	0	1	0	C|0.481;T|0.519	0.519	strong	.	RNASE8	11	.	NM_138331	exon1	c.C28T	p.P10S	TGCTGCCCCCTGC	.	PASS	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	37	17	45886796	45886796	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	39	76	0	0.453488	0	.	.	none	.	OSBPL7	65	.	NM_145798	exon19	c.T1929G	p.N643K	CAGGACATTGTGA	.	PASS	Atlas-SNP
NUGGC	389643	hgsc.bcm.edu	37	8	27925185	27925185	+	Missense_Mutation	SNP	G	G	A	rs74462442	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	111	186	0	0.518692	0	G|0.965;A|0.035	0.035	strong	.	.	.	.	NM_001010906	exon6	c.C557T	p.A186V	TTCCACGCATCTG	.	PASS	Atlas-SNP
COPE	11316	hgsc.bcm.edu	37	19	19023853	19023853	+	Silent	SNP	T	T	C	rs3177137	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	56	45	0	1	0	T|0.586;C|0.414	0.414	strong	COPE,NS,adenoma,0,1	COPE	26	1	NM_007263	exon2	c.A129G	p.L43L	GCTTGATAGCTGT	.	PASS	Atlas-SNP
SFTPD	6441	hgsc.bcm.edu	37	10	81697818	81697818	+	Silent	SNP	A	A	G	rs1051246	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	61	108	0	0.516949	0	A|0.837;G|0.163	0.163	strong	.	SFTPD	43	.	NM_003019	exon8	c.T918C	p.A306A	GTTCTTAGCTACG	.	PASS	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	37	10	122645376	122645376	+	Silent	SNP	A	A	T	rs7899928	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	32	71	0	0.64	0	A|0.640;T|0.360	0.360	strong	WDR11,NS,carcinoma,0,1	WDR11	95	1	NM_018117	exon15	c.A1899T	p.A633A	ACTTGCAACTCGA	.	PASS	Atlas-SNP
SURF6	6838	hgsc.bcm.edu	37	9	136199466	136199466	+	Missense_Mutation	SNP	G	G	A	rs886089	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	19	41	1	0.558824	0.0243902	A|0.255;C|0.000;G|0.745	0.255	strong	SURF6,rectum,carcinoma,0,1	SURF6	32	1	NM_006753	exon4	c.C524T	p.T175M	GCCTCCGTGGCCT	.	scavenged	Atlas-SNP
RTN4RL1	146760	hgsc.bcm.edu	37	17	1839976	1839976	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	91	199	0	0.471503	0	.	.	none	.	RTN4RL1	21	.	NM_178568	exon2	c.T1140C	p.Y380Y	TGGGGCATAGTCT	.	PASS	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	37	10	134942832	134942832	+	Silent	SNP	G	G	A	rs45586231	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	33	27	0	0.559322	0	G|0.756;A|0.244	0.244	strong	.	GPR123	118	.	NM_001083909	exon7	c.G1500A	p.P500P	GCAGCCGGGCAGG	.	PASS	Atlas-SNP
RERG	85004	hgsc.bcm.edu	37	12	15262273	15262273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	219	99	236	0	0.452055	0	.	.	none	.	RERG	30	.	NM_032918	exon5	c.A371T	p.H124L	CTGGAGTGGTCCA	.	PASS	Atlas-SNP
CTU2	348180	hgsc.bcm.edu	37	16	88781614	88781614	+	Missense_Mutation	SNP	G	G	C	rs1058158	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	26	61	0	0.440678	0	C|0.228;G|0.772;T|0.000	0.228	strong	.	CTU2	66	.	NM_001012762	exon14	c.G1444C	p.G482R	GATCCGGGACTGT	.	PASS	Atlas-SNP
ATR	545	hgsc.bcm.edu	37	3	142217537	142217537	+	Silent	SNP	A	A	G	rs2227932	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	92	225	0	0.476684	0	T|0.074;G|0.067	0.067	strong	.	ATR	285	.	NM_001184	exon32	c.T5460C	p.Y1820Y	TGAGTCATAAAAA	.	PASS	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	37	22	45255637	45255637	+	Missense_Mutation	SNP	G	G	C	rs6007344	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	38	78	0	0.5	0	G|0.764;C|0.236	0.236	strong	.	PRR5-ARHGAP8	53	.	NM_181334	exon14	c.G1270C	p.G424R	GTCACTGGCTGCC	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152084213	152084213	+	Missense_Mutation	SNP	C	C	G	rs199978168	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	25	156	0	0.141243	0	C|0.978;G|0.023	0.023	strong	.	TCHH	275	.	NM_007113	exon3	c.G1480C	p.E494Q	TCTCCTCCTCCTC	.	PASS	Atlas-SNP
MLPH	79083	hgsc.bcm.edu	37	2	238449107	238449107	+	Silent	SNP	A	A	G	rs2271809	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	22	62	0	0.360656	0	A|0.549;C|0.000;G|0.450;T|0.000	0.450	strong	MLPH,NS,carcinoma,0,2	MLPH	41	2	NM_024101	exon10	c.A1221G	p.E407E	GGAGGAAGCCAAG	.	PASS	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	37	3	123419733	123419733	+	Missense_Mutation	SNP	A	A	G	rs3732486	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	30	30	0	0.5	0	A|0.858;G|0.142	0.142	strong	.	MYLK	224	.	NM_053025	exon18	c.T2582C	p.L861P	TCCTCTAGCCAAC	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	37	2	160310246	160310246	+	Missense_Mutation	SNP	A	A	G	rs10202670	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	38	86	0	0.452381	0	A|0.916;G|0.084	0.084	strong	.	BAZ2B	196	.	NM_013450	exon4	c.T212C	p.M71T	CTGACCATTGGGA	.	PASS	Atlas-SNP
CETP	1071	hgsc.bcm.edu	37	16	57016092	57016092	+	Missense_Mutation	SNP	G	G	A	rs5882	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	97	80	0	0.97	0	G|0.426;A|0.574	0.574	strong	.	CETP	50	.	NM_000078	exon14	c.G1264A	p.V422I	GAGTCCGTCCAGA	.	PASS	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	37	7	50467767	50467767	+	Silent	SNP	C	C	A	rs61731355	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	19	41	0	0.558824	0	C|0.852;A|0.148	0.148	strong	IKZF1_ENST00000331340,NS,carcinoma,0,1	IKZF1	613	1	NM_006060	exon8	c.C1002A	p.P334P	GACGCCCCCGGGC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179587130	179587130	+	Missense_Mutation	SNP	C	C	G	rs12693166	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	73	0	0.473118	0	C|0.765;G|0.235	0.235	strong	.	TTN	18412	.	NM_001267550	exon77	c.G22384C	p.D7462H	TTTCATCGTCTCT	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1269215	1269215	+	Missense_Mutation	SNP	C	C	T	rs79239311	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	474	207	505	0	0.436709	0	C|0.866;T|0.134	0.134	strong	MUC5B,caecum,carcinoma,-1,2	MUC5B	473	2	NM_002458	exon31	c.C11105T	p.T3702M	CCACTACGACTGA	.	PASS	Atlas-SNP
GRIK4	2900	hgsc.bcm.edu	37	11	120745874	120745874	+	Silent	SNP	C	C	T	rs2230297	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	38	72	0	0.527778	0	C|0.818;T|0.182	0.182	strong	.	GRIK4	149	.	NM_014619	exon9	c.C1086T	p.H362H	CGGCCACATTGAA	.	PASS	Atlas-SNP
INPP5K	51763	hgsc.bcm.edu	37	17	1417231	1417231	+	Silent	SNP	A	A	C	rs61733750	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	49	125	0	0.485149	0	A|0.952;C|0.048	0.048	strong	.	INPP5K	30	.	NM_016532	exon2	c.T87G	p.P29P	ATCTAGAGGGGGC	.	PASS	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111962851	111962851	+	Missense_Mutation	SNP	T	T	C	rs6768523	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	64	122	0	0.587156	0	T|0.708;C|0.292	0.292	strong	.	.	.	.	NM_183061	exon11	c.A1270G	p.T424A	GTATAGTAACTGC	.	PASS	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	37	14	104436931	104436931	+	Silent	SNP	C	C	T	rs11851097	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	27	73	0	0.409091	0	C|0.648;T|0.352	0.352	strong	TDRD9_ENST00000409874,NS,carcinoma,0,1	TDRD9	175	1	NM_153046	exon6	c.C819T	p.L273L	CAAACTCTTAAGA	.	PASS	Atlas-SNP
NEIL3	55247	hgsc.bcm.edu	37	4	178262784	178262784	+	Missense_Mutation	SNP	A	A	G	rs34193982	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	21	62	0	0.5	0	A|0.894;G|0.106	0.106	strong	.	NEIL3	89	.	NM_018248	exon6	c.A857G	p.H286R	CTCAACATGTTGA	.	PASS	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	37	12	64062023	64062023	+	Missense_Mutation	SNP	A	A	C	rs10878073	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	67	182	0	0.380682	0	A|0.717;C|0.283	0.283	strong	.	DPY19L2	97	.	NM_173812	exon1	c.T151G	p.S51A	TCCAGGAGCCCCT	.	PASS	Atlas-SNP
IDS	3423	hgsc.bcm.edu	37	X	148582549	148582549	+	Silent	SNP	G	G	A	rs1141608	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	38	31	0	1	0	G|0.703;0|0.015	.	strong	.	IDS	46	.	NM_006123	exon4	c.C438T	p.T146T	ATCATCGGTATGG	.	PASS	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	37	22	40283427	40283427	+	Missense_Mutation	SNP	A	A	G	rs17319801	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	44	91	0	0.478261	0	A|0.962;G|0.038	0.038	strong	.	ENTHD1	83	.	NM_152512	exon2	c.T326C	p.I109T	TCATCTATGTGCT	.	PASS	Atlas-SNP
ZRSR2	8233	hgsc.bcm.edu	37	X	15838411	15838411	+	Silent	SNP	C	C	T	rs148608893	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	280	279	222	0	0.996429	0	C|0.994;T|0.006	0.006	strong	.	ZRSR2	78	.	NM_005089	exon10	c.C909T	p.P303P	CTGCCCCGTGACC	.	PASS	Atlas-SNP
B4GALNT4	338707	hgsc.bcm.edu	37	11	372700	372700	+	Silent	SNP	G	G	C	rs35475866	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	97	93	0	0.989796	0	G|0.714;C|0.286	0.286	strong	B4GALNT4,rectum,carcinoma,0,1	B4GALNT4	83	1	NM_178537	exon3	c.G294C	p.G98G	TGGGGGGGCTGGG	.	PASS	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	37	4	71347171	71347171	+	Missense_Mutation	SNP	C	C	T	rs147763101	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	290	55	392	0	0.189655	0	C|0.991;T|0.010	0.010	strong	MUC7,trunk,malignant_melanoma,0,1	MUC7	91	1	NM_001145007	exon4	c.C710T	p.A237V	CAGCTGCCCCACC	.	PASS	Atlas-SNP
AQP2	359	hgsc.bcm.edu	37	12	50348078	50348078	+	Silent	SNP	T	T	C	rs426496	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	24	33	0	0.489796	0	T|0.320;C|0.680	0.680	strong	.	AQP2	34	.	NM_000486	exon2	c.T501C	p.S167S	CTTCTCTGTGGCC	.	PASS	Atlas-SNP
CPNE8	144402	hgsc.bcm.edu	37	12	39087609	39087609	+	Silent	SNP	G	G	A	rs3759139	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	234	232	195	1	0.991453	0.00512821	G|0.695;A|0.305	0.305	strong	CPNE8,NS,carcinoma,0,1	CPNE8	66	1	NM_153634	exon15	c.C993T	p.Y331Y	ATTCATGTAGTGG	.	PASS	Atlas-SNP
OR10P1	121130	hgsc.bcm.edu	37	12	56031273	56031273	+	Missense_Mutation	SNP	G	G	A	rs7970885	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	44	75	0	0.571429	0	G|0.676;A|0.324	0.324	strong	OR10P1,NS,carcinoma,0,1	OR10P1	48	1	NM_206899	exon1	c.G598A	p.V200M	ATCTCCGTGATGA	.	PASS	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	37	11	77378505	77378505	+	Silent	SNP	A	A	G	rs28930682	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	31	58	0	0.525424	0	A|0.816;G|0.184	0.184	strong	.	RSF1	105	.	NM_016578	exon16	c.T3783C	p.D1261D	TAGCTCATCATCT	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6105387	6105387	+	Silent	SNP	G	G	A	rs216902	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	53	92	0	0.490741	0	G|0.580;A|0.420	0.420	strong	.	VWF	338	.	NM_000552	exon35	c.C5844T	p.C1948C	GCACACGCCTGGA	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123783934	123783934	+	Silent	SNP	T	T	C	rs10985126	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	256	115	262	0	0.449219	0	T|0.764;C|0.236	0.236	strong	C5,NS,adenoma,0,1	C5	124	1	NM_001735	exon11	c.A1155G	p.G385G	TGGGACTCCTCCT	.	PASS	Atlas-SNP
FAM200A	221786	hgsc.bcm.edu	37	7	99145845	99145845	+	Silent	SNP	C	C	T	rs10238965	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	255	100	264	1	0.392157	0.00378788	C|0.566;T|0.434	0.434	strong	.	FAM200A	27	.	NM_145111	exon2	c.G186A	p.L62L	CGATGACAATAAG	.	PASS	Atlas-SNP
DHX33	56919	hgsc.bcm.edu	37	17	5356913	5356913	+	Silent	SNP	C	C	T	rs16954697	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	101	126	0	1	0	C|0.819;N|0.001	.	strong	.	DHX33	41	.	NM_020162	exon8	c.G1383A	p.S461S	TGGCTTCGACATG	.	PASS	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	37	8	143996539	143996539	+	Missense_Mutation	SNP	T	T	C	rs4539	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	186	166	0	0.96875	0	T|0.648;C|0.352	0.352	strong	.	CYP11B2	107	.	NM_000498	exon3	c.A518G	p.K173R	TTCTTCTTCAGGG	.	PASS	Atlas-SNP
DND1	373863	hgsc.bcm.edu	37	5	140050894	140050894	+	Missense_Mutation	SNP	G	G	C	rs201638404	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	613	106	465	1	0.17292	0.00215054	G|0.979;C|0.021	0.021	strong	DND1,NS,carcinoma,-1,1	DND1	15	1	NM_194249	exon4	c.C1046G	p.T349S	ACCATGGTACCTG	.	scavenged	Atlas-SNP
ZFAND2B	130617	hgsc.bcm.edu	37	2	220072431	220072431	+	Missense_Mutation	SNP	C	C	A	rs61750009	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	36	79	0	0.413793	0	C|0.974;A|0.026	0.026	strong	.	ZFAND2B	28	.	NM_138802	exon3	c.C212A	p.P71H	GGGAGCCCCCTGA	.	PASS	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	37	14	44975510	44975510	+	Silent	SNP	C	C	T	rs3809430	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	74	155	0	0.468354	0	C|0.674;T|0.326	0.326	strong	.	FSCB	173	.	NM_032135	exon1	c.G681A	p.P227P	AAGTACCGGGGGA	.	PASS	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	37	6	110064928	110064928	+	Missense_Mutation	SNP	A	A	T	rs2295837	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	57	105	0	0.542857	0	A|0.937;T|0.063	0.063	strong	.	FIG4	77	.	NM_014845	exon10	c.A1090T	p.M364L	GACCAGATGTTCC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036971	33036971	+	Silent	SNP	C	C	T	rs2308928	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	51	91	0	0.536842	0	C|0.695;T|0.305	0.305	strong	.	HLA-DPA1	20	.	NM_033554	exon3	c.G453A	p.T151T	CAGCCACGTGACG	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214813487	214813487	+	Silent	SNP	A	A	G	rs2070066	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	35	109	0	0.336538	0	A|0.881;G|0.119	0.119	strong	.	CENPF	321	.	NM_016343	exon12	c.A1806G	p.L602L	TGCTTTAGAGTTA	.	PASS	Atlas-SNP
POM121C	100101267	hgsc.bcm.edu	37	7	75051324	75051324	+	Silent	SNP	G	G	C	rs117499978	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	118	275	1	0.438662	0.00363636	G|0.940;C|0.060	0.060	strong	.	POM121C	46	.	NM_001099415	exon13	c.C2211G	p.A737A	GGCCGGGGCTGCA	.	PASS	Atlas-SNP
GRHL3	57822	hgsc.bcm.edu	37	1	24669457	24669457	+	Missense_Mutation	SNP	C	C	T	rs41268753	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	101	179	0	0.442982	0	C|0.982;T|0.018	0.018	strong	GRHL3,NS,carcinoma,-1,1	GRHL3	69	1	NM_021180	exon11	c.C1376T	p.T459M	TGGAGACGCCACC	.	PASS	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	37	9	139299637	139299637	+	Missense_Mutation	SNP	C	C	T	rs3812577	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	40	105	0	0.470588	0	C|0.886;T|0.114	0.114	strong	.	SDCCAG3	41	.	NM_001039707	exon7	c.G911A	p.R304Q	AACTTCCGCTCAA	.	PASS	Atlas-SNP
STAM	8027	hgsc.bcm.edu	37	10	17756596	17756596	+	Silent	SNP	T	T	C	rs12221	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	69	133	0	0.442308	0	T|0.815;C|0.185	0.185	strong	STAM,NS,carcinoma,0,1	STAM	60	1	NM_003473	exon14	c.T1440C	p.Y480Y	AGTATATAGTCCT	.	PASS	Atlas-SNP
PAX9	5083	hgsc.bcm.edu	37	14	37135753	37135753	+	Missense_Mutation	SNP	G	G	C	rs4904210	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	119	113	0	0.991667	0	G|0.689;C|0.311	0.311	strong	.	PAX9	34	.	NM_006194	exon4	c.G718C	p.A240P	CCGCACGCGGTGA	.	PASS	Atlas-SNP
PYROXD2	84795	hgsc.bcm.edu	37	10	100147060	100147060	+	Silent	SNP	A	A	G	rs4345897	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	43	83	0	0.443299	0	A|0.541;G|0.459	0.459	strong	.	PYROXD2	43	.	NM_032709	exon14	c.T1452C	p.F484F	GCAATCAAACACT	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244106	244106	+	Missense_Mutation	SNP	A	A	G	rs10902112	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	81	127	0	1	0	A|0.207;G|0.793	0.793	strong	.	PSMD13	53	.	NM_175932	exon2	c.A161G	p.E54G	ACTTTGAAAATGA	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	37	19	22942325	22942325	+	Missense_Mutation	SNP	G	G	C	rs7255780	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	84	129	0	0.988235	0	G|0.635;C|0.364	0.364	strong	.	ZNF99	273	.	NM_001080409	exon4	c.C386G	p.A129G	TTATAAGCTTCTT	.	PASS	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	37	8	61767070	61767070	+	Silent	SNP	G	G	A	rs61733338	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	37	76	0	0.411111	0	G|0.997;A|0.003	0.003	strong	CHD7_ENST00000423902,NS,carcinoma,0,2	CHD7	534	2	NM_017780	exon32	c.G6924A	p.S2308S	CTTCTCGTTTTGG	.	PASS	Atlas-SNP
TMEM99	147184	hgsc.bcm.edu	37	17	38991032	38991032	+	Silent	SNP	T	T	A	rs6694	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	87	184	0	0.435	0	T|0.426;A|0.574	0.574	strong	.	TMEM99	21	.	NM_001195386	exon3	c.T264A	p.G88G	TTGCGGTCATCGG	.	PASS	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103392562	103392562	+	Missense_Mutation	SNP	C	C	A	rs12585626	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	30	62	0	0.47619	0	C|0.905;A|0.095	0.095	strong	.	.	.	.	NM_001146197	exon4	c.G10485T	p.M3495I	TGATTTCATTCCT	.	PASS	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145111529	145111529	+	Silent	SNP	A	A	G	rs11993554	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	46	100	0	0.474227	0	A|0.879;G|0.121	0.121	strong	.	OPLAH	78	.	NM_017570	exon13	c.T1836C	p.F612F	CTCCACAAAGGCT	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	37	2	218683139	218683139	+	Missense_Mutation	SNP	G	G	A	rs34291329	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	39	79	0	0.4875	0	G|0.932;A|0.068	0.068	strong	.	TNS1	251	.	NM_022648	exon24	c.C3604T	p.P1202S	TGCTGGGATTGAT	.	PASS	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	37	17	36636008	36636008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	524	22	511	0	0.0419847	0	.	.	none	ARHGAP23,NS,carcinoma,0,5	ARHGAP23	48	5	NM_001199417	exon14	c.C2513T	p.P838L	CTGGGCCCAAAGC	.	scavenged	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	37	19	44223125	44223125	+	Silent	SNP	C	C	T	rs346049	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	31	52	0	0.596154	0	C|0.805;T|0.195	0.195	strong	.	IRGC	67	.	NM_019612	exon2	c.C415T	p.L139L	TTCCTGCTGGTCT	.	PASS	Atlas-SNP
SUGP1	57794	hgsc.bcm.edu	37	19	19390185	19390185	+	Silent	SNP	G	G	A	rs11555053	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	15	47	0	0.375	0	G|0.805;A|0.195	0.195	strong	SUGP1,NS,carcinoma,0,1	SUGP1	63	1	NM_172231	exon10	c.C1365T	p.Y455Y	CATGTCGTACATC	.	PASS	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	37	4	663878	663878	+	Silent	SNP	A	A	G	rs137864502		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	60	150	0	0.540541	0	A|1.000;G|0.000	0.000	weak	.	PDE6B	80	.	NM_000283	exon22	c.A2547G	p.S849S	GTCTTCAACCTGC	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201643	24201643	+	Silent	SNP	G	G	A	rs2501431	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	81	133	0	0.50625	0	G|0.360;A|0.640	0.640	strong	.	CNR2	78	.	NM_001841	exon2	c.C465T	p.G155G	CATGATGCCCAGG	.	PASS	Atlas-SNP
ANO7	50636	hgsc.bcm.edu	37	2	242157241	242157241	+	Missense_Mutation	SNP	G	G	A	rs76832527	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	49	54	0	0.485149	0	G|0.874;A|0.126	0.126	strong	ANO7,colon,carcinoma,-2,1	ANO7	136	1	NM_001001891	exon20	c.G2275A	p.A759T	GAGCGCGCCCAGG	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73072504	73072504	+	Silent	SNP	A	A	C	rs10473959	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	83	126	0	0.553333	0	A|0.965;C|0.035	0.035	strong	.	.	.	.	NM_001080479	exon6	c.A823C	p.R275R	TGGGATAGAGCCT	.	PASS	Atlas-SNP
TMPRSS12	283471	hgsc.bcm.edu	37	12	51237816	51237816	+	Missense_Mutation	SNP	G	G	A	rs861204	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	40	82	0	0.425532	0	G|0.806;A|0.193	0.193	strong	.	TMPRSS12	33	.	NM_182559	exon2	c.G379A	p.A127T	AAAGACGCTAGGT	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113276356	113276356	+	Missense_Mutation	SNP	C	C	G	rs3818764	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	85	176	0	0.438144	0	C|0.847;G|0.153	0.153	strong	.	SVEP1	326	.	NM_153366	exon4	c.G995C	p.G332A	GGTGAGCCTTCAG	.	PASS	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	37	5	168093522	168093522	+	Silent	SNP	G	G	A	rs1048307	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	29	52	0	0.391892	0	G|0.834;A|0.166	0.166	strong	.	SLIT3	224	.	NM_001271946	exon36	c.C4530T	p.D1510D	GGAGCCGTCCGTG	.	PASS	Atlas-SNP
HIST1H1B	3009	hgsc.bcm.edu	37	6	27834877	27834877	+	Missense_Mutation	SNP	T	T	C	rs11970638	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	48	106	0	0.432432	0	T|0.968;C|0.032	0.032	strong	.	HIST1H1B	54	.	NM_005322	exon1	c.A431G	p.K144R	GCAGCCTTCTTGG	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	37	1	232581436	232581436	+	Silent	SNP	G	G	A	rs12757779	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	65	125	0	0.601852	0	G|0.886;A|0.114	0.114	strong	.	SIPA1L2	218	.	NM_020808	exon9	c.C3192T	p.T1064T	CCACGTGGTGTTC	.	PASS	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	37	5	161119125	161119125	+	Silent	SNP	C	C	G	rs13184586	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	138	145	0	1	0	C|0.535;G|0.465	0.465	strong	.	GABRA6	139	.	NM_000811	exon8	c.C1005G	p.A335A	GAAGGCCAAAAGG	.	PASS	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	37	14	102808330	102808330	+	Silent	SNP	C	C	T	rs12590618	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	90	119	0	0.596026	0	C|0.703;T|0.297	0.297	strong	.	ZNF839	41	.	NM_018335	exon8	c.C2598T	p.V866V	TGCTGTCGGCGAA	.	PASS	Atlas-SNP
IRF2BP1	26145	hgsc.bcm.edu	37	19	46387344	46387344	+	Silent	SNP	G	G	A	rs11550348	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	33	73	0	0.44	0	G|0.836;A|0.164	0.164	strong	.	IRF2BP1	23	.	NM_015649	exon1	c.C1689T	p.F563F	CTGCATGAAGGCC	.	PASS	Atlas-SNP
TNNT2	7139	hgsc.bcm.edu	37	1	201334795	201334795	+	Silent	SNP	C	C	T	rs3729845	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	69	94	0	0.507353	0	C|0.911;T|0.089	0.089	strong	.	TNNT2	43	.	NM_001276345	exon9	c.G237A	p.S79S	CATGAACGACCTG	.	PASS	Atlas-SNP
BLMH	642	hgsc.bcm.edu	37	17	28576076	28576076	+	Missense_Mutation	SNP	T	T	C	rs1050565	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	50	140	0	0.381679	0	T|0.728;C|0.272	0.272	strong	.	BLMH	42	.	NM_000386	exon12	c.A1327G	p.I443V	GCAGGATAATGGG	.	PASS	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	37	6	154360797	154360797	+	Missense_Mutation	SNP	A	A	G	rs1799971	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	38	63	0	0.535211	0	A|0.815;G|0.185	0.185	strong	.	OPRM1	241	.	NM_001145279	exon3	c.A397G	p.N133D	GATGGCAACCTGT	.	PASS	Atlas-SNP
APMAP	57136	hgsc.bcm.edu	37	20	24973247	24973247	+	Silent	SNP	C	C	A	rs11550623	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	43	74	0	0.565789	0	C|0.925;A|0.075	0.075	strong	.	APMAP	3	.	NM_020531	exon1	c.G78T	p.P26P	AGCCTCCGGGGCC	.	PASS	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39594857	39594857	+	Silent	SNP	G	G	T	rs60786473	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	60	96	0	0.521739	0	G|0.928;T|0.072	0.072	strong	.	KRT38	63	.	NM_006771	exon5	c.C906A	p.I302I	CAGGCTGATGCCT	.	PASS	Atlas-SNP
DDX11	1663	hgsc.bcm.edu	37	12	31256517	31256517	+	Missense_Mutation	SNP	C	C	T	rs140335402	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	47	134	0	0.382114	0	C|0.931;T|0.069	0.069	strong	DDX11_ENST00000407793,NS,haematopoietic_neoplasm,0,2	DDX11	188	2	NM_030653	exon26	c.C2543T	p.A848V	GCAGGGCCATCAG	.	PASS	Atlas-SNP
HCRTR2	3062	hgsc.bcm.edu	37	6	55147110	55147110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	3	110	1	0.0254237	0.00909091	.	.	none	HCRTR2,NS,carcinoma,+1,1	HCRTR2	112	1	NM_001526	exon7	c.G1193A	p.R398Q	GGGGACGAACTAG	.	scavenged	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24406647	24406647	+	Silent	SNP	G	G	A	rs4649175	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	55	121	0	0.443548	0	G|0.639;A|0.361	0.361	strong	.	MYOM3	131	.	NM_152372	exon20	c.C2445T	p.A815A	GGATGTGGCCCGC	.	PASS	Atlas-SNP
HTR4	3360	hgsc.bcm.edu	37	5	147889348	147889348	+	Silent	SNP	A	A	G	rs55727780	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	66	131	0	0.507692	0	A|0.982;G|0.018	0.018	strong	.	HTR4	161	.	NM_001040169	exon5	c.T747C	p.H249H	CATGCGATGAGTG	.	PASS	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	37	17	45451894	45451894	+	Missense_Mutation	SNP	G	G	A	rs4968318	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	93	138	0	1	0	G|0.358;A|0.642	0.642	strong	.	.	.	.	NM_152347	exon12	c.G934A	p.V312I	TCAAGTGTAGCAG	.	PASS	Atlas-SNP
PRPF31	26121	hgsc.bcm.edu	37	19	54634830	54634830	+	Silent	SNP	C	C	T	rs62144168	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	72	161	0	0.404494	0	C|0.925;T|0.075	0.075	strong	.	PRPF31	48	.	NM_015629	exon14	c.C1467T	p.V489V	CAAGGTCAAGGGC	.	PASS	Atlas-SNP
MED24	9862	hgsc.bcm.edu	37	17	38179492	38179492	+	Silent	SNP	A	A	G	rs2302777	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	121	134	0	0.991803	0	A|0.706;G|0.294	0.294	strong	.	MED24	89	.	NM_014815	exon20	c.T2142C	p.I714I	GGCAAAAATGTCC	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3730041	3730041	+	Silent	SNP	C	C	T	rs7258176	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	46	90	0	0.484211	0	C|0.314;T|0.686	0.686	strong	.	TJP3	79	.	NM_001267561	exon4	c.C201T	p.I67I	CCACATCGTCATG	.	PASS	Atlas-SNP
POLR1E	64425	hgsc.bcm.edu	37	9	37501752	37501752	+	Silent	SNP	T	T	C	rs17412622	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	63	132	0	0.552632	0	T|0.952;C|0.048	0.048	strong	.	POLR1E	28	.	NM_022490	exon11	c.T1011C	p.T337T	GATTACTGCATAT	.	PASS	Atlas-SNP
ARHGAP11B	89839	hgsc.bcm.edu	37	15	30927750	30927750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	97	250	0	0.384921	0	.	.	none	ARHGAP11B,colon,carcinoma,-2,1	ARHGAP11B	14	1	NM_001039841	exon6	c.G721A	p.V241M	GTCTCTGTGCTAC	.	PASS	Atlas-SNP
OR51A2	401667	hgsc.bcm.edu	37	11	4976671	4976671	+	Silent	SNP	G	G	A	rs2595984	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	371	5	310	0	0.0134771	0	G|0.880;A|0.120	0.120	strong	OR51A2,rectum,carcinoma,0,1	OR51A2	40	1	NM_001004748	exon1	c.C273T	p.A91A	TTCAGGGGCATTG	.	scavenged	Atlas-SNP
SMIM11	54065	hgsc.bcm.edu	37	21	35757915	35757915	+	Missense_Mutation	SNP	A	A	G	rs34016792	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	45	112	0	0.473684	0	A|0.979;G|0.021	0.021	strong	.	.	.	.	NM_058182	exon3	c.A152G	p.K51R	GGAAGAAGCAATC	.	PASS	Atlas-SNP
DOK2	9046	hgsc.bcm.edu	37	8	21767042	21767042	+	Missense_Mutation	SNP	C	C	T	rs372534431		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	40	100	0	0.425532	0	.	.	weak	.	DOK2	51	.	NM_003974	exon5	c.G1019A	p.R340Q	TCAGGTCGAGGGG	.	PASS	Atlas-SNP
AKNAD1	254268	hgsc.bcm.edu	37	1	109363232	109363232	+	Silent	SNP	T	T	C	rs1333130	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	55	69	0	1	0	T|0.694;C|0.306	0.306	strong	.	AKNAD1	83	.	NM_152763	exon14	c.A2184G	p.K728K	GATCCGTTTGGGT	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306681	1306681	+	Missense_Mutation	SNP	G	G	A	rs71384640	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	103	172	0	0.550802	0	C|1.000;|0.000	.	alt	.	TPSD1	47	.	NM_012217	exon2	c.G247A	p.V83M	CACTGCGTGGAAC	.	PASS	Atlas-SNP
SLC22A5	6584	hgsc.bcm.edu	37	5	131705949	131705949	+	Silent	SNP	T	T	C	rs61742215	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	40	94	0	0.412371	0	T|0.732;C|0.268	0.268	strong	.	SLC22A5	34	.	NM_003060	exon1	c.T285C	p.L95L	GGCGCTTGGGCTG	.	PASS	Atlas-SNP
PSG3	5671	hgsc.bcm.edu	37	19	43243238	43243238	+	Missense_Mutation	SNP	A	A	G	rs78870781		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	77	181	0	0.425414	0	.	.	weak	.	PSG3	82	.	NM_021016	exon2	c.T68C	p.L23S	AAAAGTAATGCTA	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	37	19	22941938	22941938	+	Missense_Mutation	SNP	T	T	G	rs6511379	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	5	13	0	0.416667	0	T|0.901;G|0.099	0.099	strong	.	ZNF99	273	.	NM_001080409	exon4	c.A773C	p.K258T	TCACATTTGCAGG	.	PASS	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	37	17	65212042	65212042	+	Missense_Mutation	SNP	C	C	T	rs8080100	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	387	170	393	0	0.439276	0	C|0.831;T|0.169	0.169	strong	.	HELZ	160	.	NM_014877	exon5	c.G220A	p.V74M	CTTGCACATAATT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507874	195507874	+	Missense_Mutation	SNP	G	G	T	rs199875073	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	525	18	471	18	0.0342857	0.0382166	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C10577A	p.T3526N	GAGGAAGTGTCGG	.	scavenged	Atlas-SNP
CPT1C	126129	hgsc.bcm.edu	37	19	50204843	50204843	+	Silent	SNP	G	G	A	rs12973248	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	38	60	0	0.59375	0	G|0.880;A|0.120	0.120	strong	.	CPT1C	93	.	NM_001199752	exon7	c.G645A	p.S215S	GGCGTCGCTGCTG	.	PASS	Atlas-SNP
PDCD6IP	10015	hgsc.bcm.edu	37	3	33905566	33905566	+	Missense_Mutation	SNP	C	C	T	rs1127732	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	135	258	1	0.535714	0.00387597	C|0.800;N|0.001	.	strong	.	PDCD6IP	62	.	NM_001162429	exon16	c.C2204T	p.S735L	AGTCCTCACCAGC	.	PASS	Atlas-SNP
TFPI	7035	hgsc.bcm.edu	37	2	188343497	188343497	+	Missense_Mutation	SNP	T	T	C	rs7586970	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	80	1	1	0.0125	T|0.703;C|0.297	0.297	strong	TFPI_ENST00000409676,NS,carcinoma,0,1	TFPI	66	1	NM_001032281	exon7	c.A662G	p.N221S	GCCGCATTCTTCC	.	scavenged	Atlas-SNP
TUSC1	286319	hgsc.bcm.edu	37	9	25677698	25677698	+	Missense_Mutation	SNP	A	A	C	rs72631815	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	18	32	0	1	0	A|0.795;C|0.205	0.205	strong	.	TUSC1	7	.	NM_001004125	exon1	c.T622G	p.S208A	GCCCAGAGGGCTC	.	PASS	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51096036	51096036	+	Missense_Mutation	SNP	G	G	C	rs2240089	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	257	103	312	0	0.400778	0	G|0.814;C|0.186	0.186	strong	.	COBL	167	.	NM_015198	exon10	c.C2757G	p.H919Q	CTCTGAGTGTGGG	.	PASS	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	37	9	107456763	107456763	+	Missense_Mutation	SNP	T	T	C	rs10991359	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	68	138	1	0.53125	0.00724638	T|0.800;C|0.200	0.200	strong	OR13D1,NS,carcinoma,0,1	OR13D1	42	1	NM_001004484	exon1	c.T61C	p.F21L	GTCCTTTTCTATA	.	scavenged	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	37	12	118508870	118508870	+	Missense_Mutation	SNP	C	C	G	rs150561165	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	25	41	0	0.471698	0	C|0.996;G|0.004	0.004	strong	.	VSIG10	41	.	NM_019086	exon7	c.G1333C	p.G445R	TGTTTCCTACTGA	.	PASS	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	37	6	42627434	42627434	+	Missense_Mutation	SNP	G	G	A	rs6917033	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	40	77	0	0.606061	0	A|0.421;G|0.579	0.421	strong	.	UBR2	134	.	NM_015255	exon30	c.G3283A	p.A1095T	GGCCCCGCACAAA	.	PASS	Atlas-SNP
ANKK1	255239	hgsc.bcm.edu	37	11	113266821	113266821	+	Missense_Mutation	SNP	G	G	A	rs7118900	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	55	139	0	0.419847	0	G|0.714;A|0.286	0.286	strong	.	ANKK1	83	.	NM_178510	exon5	c.G715A	p.A239T	CGAGTGGCGGCAG	.	PASS	Atlas-SNP
KNSTRN	90417	hgsc.bcm.edu	37	15	40683702	40683702	+	Missense_Mutation	SNP	A	A	G	rs11541642	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	25	52	0	0.480769	0	A|0.933;G|0.067	0.067	strong	.	.	.	.	NM_033286	exon7	c.A694G	p.S232G	TTAGGCAGTGAGA	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214813941	214813941	+	Missense_Mutation	SNP	C	C	G	rs3795523	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	71	118	0	0.596639	0	C|0.885;G|0.115	0.115	strong	.	CENPF	321	.	NM_016343	exon12	c.C2260G	p.Q754E	TGTTACCAAGACT	.	PASS	Atlas-SNP
GALNT8	26290	hgsc.bcm.edu	37	12	4873163	4873163	+	Missense_Mutation	SNP	G	G	T	rs1468556	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	107	244	1	0.471366	0.00409836	G|0.627;T|0.373	0.373	strong	GALNT8,NS,adenoma,0,1	GALNT8	89	1	NM_017417	exon9	c.G1543T	p.V515F	GGACCCGTTCCAG	.	PASS	Atlas-SNP
ST6GALNAC6	30815	hgsc.bcm.edu	37	9	130656800	130656800	+	Silent	SNP	G	G	A	rs11552227	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	18	34	0	0.45	0	G|0.999;A|0.001	0.001	strong	.	ST6GALNAC6	36	.	NM_013443	exon4	c.C288T	p.L96L	GTTGCCGAGAATG	.	PASS	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	37	11	4661243	4661243	+	Missense_Mutation	SNP	T	T	C	rs61740347	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	283	131	270	0	0.462898	0	T|0.936;C|0.064	0.064	strong	.	OR51D1	49	.	NM_001004751	exon1	c.T223C	p.F75L	TACCTCTTCCTGG	.	PASS	Atlas-SNP
EBLN2	55096	hgsc.bcm.edu	37	3	73111998	73111998	+	Missense_Mutation	SNP	C	C	T	rs1060584	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	88	113	0	1	0	C|0.490;T|0.510	0.510	strong	.	EBLN2	18	.	NM_018029	exon1	c.C766T	p.L256F	TTCACACTTCTAT	.	PASS	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	37	1	89847411	89847411	+	Missense_Mutation	SNP	C	C	T	rs4658360	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	168	153	0	1	0	C|0.206;T|0.794	0.794	strong	.	GBP6	87	.	NM_198460	exon7	c.C1030T	p.L344F	GTGAAGCTCCCCA	.	PASS	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	37	7	92731902	92731902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	3	243	0	0.010989	0	.	.	none	SAMD9,NS,carcinoma,0,1	SAMD9	239	1	NM_001193307	exon2	c.G3509A	p.S1170N	TCTTCACTTTGCT	.	scavenged	Atlas-SNP
ZNF488	118738	hgsc.bcm.edu	37	10	48370595	48370595	+	Silent	SNP	G	G	A	rs11204210	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	70	52	0	1	0	G|0.644;A|0.356	0.356	strong	ZNF488,NS,carcinoma,0,2	ZNF488	38	2	NM_153034	exon2	c.G63A	p.G21G	AGCTGGGAAGGGA	.	PASS	Atlas-SNP
RALGDS	5900	hgsc.bcm.edu	37	9	135982088	135982088	+	Silent	SNP	A	A	C	rs2073822	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	58	126	0	0.449612	0	A|0.759;C|0.241	0.241	strong	.	RALGDS	75	.	NM_006266	exon8	c.T1461G	p.S487S	CAGGGCAGAGAGG	.	PASS	Atlas-SNP
MCM5	4174	hgsc.bcm.edu	37	22	35802661	35802661	+	Missense_Mutation	SNP	C	C	G	rs2307340	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	30	66	0	0.508475	0	C|0.945;G|0.055	0.055	strong	.	MCM5	54	.	NM_006739	exon5	c.C539G	p.T180S	CCCTCACCAACAT	.	PASS	Atlas-SNP
ABHD16B	140701	hgsc.bcm.edu	37	20	62494027	62494027	+	Silent	SNP	G	G	C	rs2236152	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	13	9	5	0	0.692308	0	G|0.925;C|0.075	0.075	strong	.	ABHD16B	22	.	NM_080622	exon1	c.G1134C	p.A378A	CTTGGCGCAGGAG	.	PASS	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	37	4	77662125	77662125	+	Silent	SNP	C	C	T	rs36036308	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	15	35	0	0.375	0	C|0.951;T|0.049	0.049	strong	.	SHROOM3	134	.	NM_020859	exon5	c.C2799T	p.S933S	ACAGTCCCGTGTC	.	PASS	Atlas-SNP
EHD2	30846	hgsc.bcm.edu	37	19	48244401	48244401	+	Silent	SNP	G	G	A	rs35910701	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	19	39	0	0.5	0	A|0.141;C|0.000;G|0.858	0.141	strong	.	EHD2	59	.	NM_014601	exon6	c.G1344A	p.K448K	GACCAAGGACAAG	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187539217	187539217	+	Silent	SNP	G	G	A	rs3733405	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	73	170	0	0.462025	0	G|0.923;A|0.077	0.077	strong	.	FAT1	500	.	NM_005245	exon10	c.C8523T	p.N2841N	TTGGCCGTTGGTT	.	PASS	Atlas-SNP
MADCAM1	8174	hgsc.bcm.edu	37	19	501802	501802	+	Missense_Mutation	SNP	G	G	C	rs75905809	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	26	88	21	0.27957	0.238636	G|0.500;C|0.500	0.500	weak	MADCAM1,rectum,carcinoma,+1,1	MADCAM1	29	1	NM_130760	exon4	c.G801C	p.K267N	CGACAAGACCTCC	.	scavenged	Atlas-SNP
NSUN2	54888	hgsc.bcm.edu	37	5	6604787	6604787	+	Silent	SNP	C	C	T	rs13181449	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	54	105	0	0.446281	0	C|0.819;T|0.181	0.181	strong	.	NSUN2	82	.	NM_017755	exon16	c.G1749A	p.T583T	GATCCCCGTGTTA	.	PASS	Atlas-SNP
BDNF	627	hgsc.bcm.edu	37	11	27720937	27720937	+	Missense_Mutation	SNP	C	C	T	rs66866077	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	33	56	0	0.485294	0	T|0.032;G|0.020;C|0.947;A|0.001	0.032	strong	.	BDNF	63	.	NM_170734	exon1	c.G16A	p.E6K	ATTCCTCTTCCCG	.	PASS	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	37	2	48915871	48915871	+	Silent	SNP	A	A	G	rs11125179	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	71	116	0	0.496504	0	A|0.453;G|0.547	0.547	strong	.	LHCGR	154	.	NM_000233	exon11	c.T1065C	p.D355D	CATAATATCTTCA	.	PASS	Atlas-SNP
AKAP17A	8227	hgsc.bcm.edu	37	X	1713021	1713021	+	Silent	SNP	C	C	T	rs6644621	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	68	0	1	0	C|0.448;T|0.552	0.552	strong	.	AKAP17A	46	.	NM_005088	exon2	c.C666T	p.R222R	GTACCGCGAGTAC	.	PASS	Atlas-SNP
SNPH	9751	hgsc.bcm.edu	37	20	1285933	1285933	+	Silent	SNP	G	G	A	rs3795139	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	30	91	0	0.352941	0	G|0.650;A|0.350	0.350	strong	.	SNPH	89	.	NM_014723	exon6	c.G720A	p.G240G	GGATGGGGCAGAC	.	PASS	Atlas-SNP
ZNF160	90338	hgsc.bcm.edu	37	19	53572059	53572059	+	Silent	SNP	T	T	C	rs78382850	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	42	73	0	0.494118	0	T|0.945;C|0.055	0.055	strong	.	ZNF160	75	.	NM_001102603	exon7	c.A1728G	p.Q576Q	TGATGTTTGAGCG	.	PASS	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	37	2	214012508	214012508	+	Silent	SNP	C	C	T	rs6709554	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	103	215	0	0.443966	0	C|0.771;T|0.229	0.229	strong	.	IKZF2	71	.	NM_001079526	exon4	c.G63A	p.E21E	GGAGTGCTCCCTT	.	PASS	Atlas-SNP
METTL11B	149281	hgsc.bcm.edu	37	1	170135765	170135765	+	Silent	SNP	T	T	C	rs6669514	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	75	160	0	0.436047	0	T|0.746;C|0.254	0.254	strong	.	METTL11B	18	.	NM_001136107	exon3	c.T453C	p.F151F	ATCCTTTCTCCTT	.	PASS	Atlas-SNP
OR10H1	26539	hgsc.bcm.edu	37	19	15918455	15918455	+	Silent	SNP	G	G	A	rs61739573	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	261	135	222	5	0.517241	0.0225225	G|0.794;A|0.206	0.206	strong	OR10H1,NS,carcinoma,-2,1	OR10H1	59	1	NM_013940	exon1	c.C393T	p.R131R	GTTGTAGCGCAGG	.	scavenged	Atlas-SNP
CCDC36	339834	hgsc.bcm.edu	37	3	49273996	49273996	+	Silent	SNP	C	C	T	rs12631989	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	316	314	388	0	0.993671	0	C|0.390;T|0.610	0.610	strong	.	CCDC36	77	.	NM_001135197	exon3	c.C72T	p.S24S	GTCATCCAACTGG	.	PASS	Atlas-SNP
LSS	4047	hgsc.bcm.edu	37	21	47635627	47635627	+	Silent	SNP	C	C	G	rs9980968	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	57	93	0	0.495652	0	C|0.618;G|0.382	0.382	strong	.	LSS	50	.	NM_001001438	exon8	c.G864C	p.P288P	GCTGTGCGGCGTG	.	PASS	Atlas-SNP
TAS2R1	50834	hgsc.bcm.edu	37	5	9629295	9629295	+	Silent	SNP	A	A	G	rs2234235	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	50	114	0	0.543478	0	A|0.971;G|0.029	0.029	strong	.	TAS2R1	84	.	NM_019599	exon1	c.T850C	p.L284L	GTTTCAATTTAGG	.	PASS	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	37	2	33567971	33567971	+	Missense_Mutation	SNP	C	C	T	rs61751742	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	45	105	0	0.441176	0	C|0.991;T|0.009	0.009	strong	LTBP1_ENST00000407925,NS,carcinoma,-1,2	LTBP1	317	2	NM_206943	exon25	c.C3797T	p.S1266F	CTGGCTCCTTCCG	.	PASS	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	37	1	186276661	186276661	+	Missense_Mutation	SNP	A	A	G	rs61831150	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	52	110	1	0.416	0.00909091	A|0.713;G|0.287	0.287	strong	PRG4,brain,glioma,0,1	PRG4	259	1	NM_005807	exon7	c.A1810G	p.T604A	CCCACCACTCCCA	.	scavenged	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	37	17	73919538	73919538	+	Missense_Mutation	SNP	G	G	A	rs7218738	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	61	113	0	0.521368	0	G|0.882;A|0.118	0.118	strong	.	FBF1	48	.	NM_001080542	exon13	c.C1108T	p.P370S	TGACAGGCACTGA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105409907	105409907	+	Missense_Mutation	SNP	T	T	C	rs10141053	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	221	205	0	1	0	T|0.678;C|0.322	0.322	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A11881G	p.M3961V	CCGTCATGTCCTT	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82815170	82815170	+	Missense_Mutation	SNP	A	A	G	rs61749613	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	59	86	0	0.541284	0	A|0.973;G|0.027	0.027	strong	.	VCAN	498	.	NM_004385	exon7	c.A1045G	p.K349E	CTAGCTAAAGAGG	.	PASS	Atlas-SNP
TSR1	55720	hgsc.bcm.edu	37	17	2236404	2236404	+	Missense_Mutation	SNP	T	T	C	rs2281726	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	68	165	0	0.456376	0	T|0.862;C|0.138	0.138	strong	.	TSR1	57	.	NM_018128	exon7	c.A1156G	p.S386G	TAGAACTTTCCTT	.	PASS	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	37	17	39471778	39471778	+	Missense_Mutation	SNP	C	C	T	rs78413710	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	31	34	0	0.738095	0	C|0.818;T|0.182	0.182	strong	.	KRTAP17-1	14	.	NM_031964	exon1	c.G125A	p.G42D	CCGCAGCCAGAGC	.	PASS	Atlas-SNP
GPR97	222487	hgsc.bcm.edu	37	16	57707249	57707249	+	Silent	SNP	C	C	T	rs73552781	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	186	157	0	0.994652	0	C|0.957;T|0.043	0.043	strong	.	GPR97	74	.	NM_170776	exon2	c.C75T	p.T25T	GCCCACCGAAGGG	.	PASS	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	37	19	55598724	55598724	+	Missense_Mutation	SNP	A	A	G	rs1054940	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	34	49	0	0.53125	0	A|0.559;G|0.441	0.441	strong	EPS8L1_ENST00000245618,NS,carcinoma,0,2	EPS8L1	122	2	NM_133180	exon19	c.A2006G	p.K669R	TGCAGAAGGAGGA	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12400783	12400783	+	Missense_Mutation	SNP	C	C	T	rs35171886	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	36	65	0	0.4	0	C|0.884;T|0.116	0.116	strong	.	VWDE	123	.	NM_001135924	exon15	c.G3149A	p.C1050Y	ATAGTACATGAGT	.	PASS	Atlas-SNP
FBXO30	84085	hgsc.bcm.edu	37	6	146126419	146126419	+	Missense_Mutation	SNP	C	C	T	rs9373475	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	245	192	0	0.995935	0	C|0.663;N|0.000	.	strong	.	FBXO30	56	.	NM_032145	exon2	c.G1123A	p.V375M	TCTTCACGTCCCC	.	PASS	Atlas-SNP
AMPH	273	hgsc.bcm.edu	37	7	38431436	38431436	+	Silent	SNP	C	C	T	rs1058656	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	50	107	0	0.406504	0	C|0.804;T|0.196	0.196	strong	.	AMPH	157	.	NM_001635	exon19	c.G1791A	p.T597T	AGAAGGCGTGGGC	.	PASS	Atlas-SNP
MYSM1	114803	hgsc.bcm.edu	37	1	59127086	59127086	+	Silent	SNP	G	G	A	rs7523134	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	52	142	0	0.422764	0	G|0.742;A|0.258	0.258	strong	.	MYSM1	50	.	NM_001085487	exon18	c.C2262T	p.L754L	ATGGGAGAGCCTG	.	PASS	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	37	9	370244	370244	+	Silent	SNP	A	A	G	rs913703	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	63	138	0	0.516393	0	A|0.770;G|0.230	0.230	strong	.	DOCK8	401	.	NM_203447	exon16	c.A1812G	p.K604K	TGGAAAATCCAGC	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62212781	62212781	+	Silent	SNP	T	T	C	rs17238189	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	117	205	1	0.515419	0.00487805	T|0.930;C|0.070	0.070	strong	.	VPS13C	506	.	NM_020821	exon56	c.A7128G	p.Q2376Q	TGCCATTTGTGGC	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44061036	44061036	+	Missense_Mutation	SNP	T	T	C	rs62063787	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	94	137	0	1	0	T|0.849;C|0.151	0.151	strong	.	MAPT	135	.	NM_001123066	exon6	c.T866C	p.V289A	CCAGTGTAGGGCG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9048170	9048170	+	Missense_Mutation	SNP	G	G	A	rs10417600	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	60	125	0	0.526316	0	G|0.796;A|0.204	0.204	strong	.	MUC16	4315	.	NM_024690	exon5	c.C33461T	p.S11154F	ACCAGAGAGGTCA	.	PASS	Atlas-SNP
TRIM55	84675	hgsc.bcm.edu	37	8	67064654	67064654	+	Missense_Mutation	SNP	A	A	G	rs7843605	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	13	36	0	0.464286	0	A|0.741;G|0.259	0.259	strong	TRIM55,NS,carcinoma,0,1	TRIM55	91	1	NM_184086	exon8	c.A1028G	p.K343R	GAGAAAAAGAAGG	.	PASS	Atlas-SNP
C17orf80	55028	hgsc.bcm.edu	37	17	71239087	71239087	+	Silent	SNP	G	G	T	rs1566290	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	37	79	0	0.480519	0	G|0.750;T|0.250	0.250	strong	C17orf80,colon,carcinoma,+1,2	C17orf80	37	2	NM_017941	exon5	c.G1674T	p.T558T	CATCACGATGCTC	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17085006	17085006	+	Missense_Mutation	SNP	C	C	T	rs201784242	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	546	42	420	0	0.0769231	0	C|0.987;T|0.013	0.013	strong	.	.	.	.	NM_001271733	exon11	c.G1469A	p.G490E	TGGCCCCCAGCCA	.	PASS	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	37	8	144895669	144895669	+	Silent	SNP	G	G	A	rs56748182	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	36	74	0	0.439024	0	G|0.941;A|0.059	0.059	strong	.	SCRIB	192	.	NM_015356	exon5	c.C474T	p.L158L	CTCCCGGAGCTCC	.	PASS	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	37	12	18435452	18435452	+	Missense_Mutation	SNP	C	C	T	rs11044004	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	27	73	0	0.442623	0	C|0.656;T|0.344	0.344	strong	.	PIK3C2G	315	.	NM_004570	exon2	c.C437T	p.P146L	TAGCTCCATCATT	.	PASS	Atlas-SNP
KNSTRN	90417	hgsc.bcm.edu	37	15	40675443	40675443	+	Missense_Mutation	SNP	G	G	T	rs7169404	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	23	57	0	0.433962	0	G|0.931;T|0.069	0.069	strong	C15orf23,NS,carcinoma,0,1	.	.	1	NM_033286	exon2	c.G224T	p.R75L	CGTGCCGCCTCGT	.	PASS	Atlas-SNP
NOP14	8602	hgsc.bcm.edu	37	4	2951804	2951804	+	Missense_Mutation	SNP	A	A	G	rs2515960	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	117	249	0	0.446565	0	A|0.537;G|0.463	0.463	strong	.	NOP14	69	.	NM_003703	exon8	c.T1139C	p.L380S	AGGTCCAAGTGGC	.	PASS	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	37	3	184103903	184103903	+	Missense_Mutation	SNP	A	A	C	rs16858780	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	119	245	1	0.497908	0.00408163	A|0.751;C|0.249	0.249	strong	.	CHRD	149	.	NM_003741	exon15	c.A1888C	p.M630L	TCCCTGATGATCA	.	PASS	Atlas-SNP
CNTNAP3	79937	hgsc.bcm.edu	37	9	39086836	39086836	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	274	2	266	0	0.00729927	0	.	.	none	CNTNAP3,NS,malignant_melanoma,0,1	CNTNAP3	82	1	NM_033655	exon20	c.G3231A	p.Q1077Q	CCTAATCTGCAAA	.	scavenged	Atlas-SNP
RELL2	285613	hgsc.bcm.edu	37	5	141019110	141019110	+	Missense_Mutation	SNP	C	C	A	rs14251	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	44	113	0	0.483516	0	C|0.567;A|0.433	0.433	strong	.	RELL2	24	.	NM_173828	exon4	c.C397A	p.L133I	CCTTGCCTCCATT	.	PASS	Atlas-SNP
CCDC176	80127	hgsc.bcm.edu	37	14	74516497	74516497	+	Silent	SNP	G	G	A	rs34076068	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	71	169	0	0.435583	0	G|0.885;A|0.115	0.115	strong	.	.	.	.	NM_025057	exon8	c.G885A	p.L295L	AAACTTGGAGACT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214819587	214819587	+	Missense_Mutation	SNP	A	A	G	rs12058704	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	55	138	0	0.40146	0	A|0.915;G|0.085	0.085	strong	.	CENPF	321	.	NM_016343	exon13	c.A6674G	p.Q2225R	AAGGTCAGTTGTC	.	PASS	Atlas-SNP
CTTN	2017	hgsc.bcm.edu	37	11	70279766	70279766	+	Silent	SNP	C	C	T	rs643301	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	69	137	0	0.511111	0	C|0.811;T|0.189	0.189	strong	.	CTTN	162	.	NM_005231	exon17	c.C1458T	p.Y486Y	CACCTACGATGAG	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	6999628	6999628	+	Silent	SNP	T	T	C	rs625106	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	70	70	0	0.972222	0	T|0.500;C|0.500	0.500	strong	.	LAMA1	458	.	NM_005559	exon32	c.A4479G	p.S1493S	ATAGCTTGAGGAG	.	PASS	Atlas-SNP
OR51E1	143503	hgsc.bcm.edu	37	11	4673788	4673788	+	Missense_Mutation	SNP	G	G	A	rs17224476	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	49	104	0	0.462264	0	G|0.926;A|0.074	0.074	strong	.	OR51E1	67	.	NM_152430	exon2	c.G32A	p.S11N	AATCCAGTGCTAC	.	PASS	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	37	1	205819039	205819039	+	Silent	SNP	C	C	T	rs11540016	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	46	104	0	0.479167	0	C|0.902;T|0.098	0.098	strong	.	PM20D1	56	.	NM_152491	exon1	c.G162A	p.A54A	TTTCAGCGCCTCT	.	PASS	Atlas-SNP
FGFRL1	53834	hgsc.bcm.edu	37	4	1018271	1018271	+	Silent	SNP	T	T	C	rs4647946	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	58	204	0	0.389262	0	T|0.965;C|0.035	0.035	strong	FGFRL1_ENST00000542622,NS,carcinoma,0,2	FGFRL1	77	2	NM_001004356	exon6	c.T891C	p.D297D	CATCGATGTGGGC	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202715284	202715284	+	Silent	SNP	G	G	A	rs1141108	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	117	117	0	0.991525	0	G|0.346;A|0.654	0.654	strong	.	KDM5B	166	.	NM_006618	exon15	c.C2184T	p.Y728Y	ATATTTGTAAGGA	.	PASS	Atlas-SNP
MARCO	8685	hgsc.bcm.edu	37	2	119739063	119739063	+	Missense_Mutation	SNP	T	T	C	rs6761637	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	31	64	0	0.5	0	T|0.873;C|0.127	0.127	strong	MARCO,brain,glioma,0,1	MARCO	120	1	NM_006770	exon9	c.T845C	p.F282S	GTGACTTCGGGAG	.	PASS	Atlas-SNP
GATA2	2624	hgsc.bcm.edu	37	3	128204960	128204960	+	Missense_Mutation	SNP	G	G	C	rs34799090	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	76	105	0	0.589147	0	G|0.992;C|0.008	0.008	strong	.	GATA2	122	.	NM_001145662	exon3	c.C481G	p.P161A	CTGTAGGGGTGAG	.	PASS	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	37	13	109793246	109793246	+	Silent	SNP	G	G	C	rs80260507	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	14	33	0	0.451613	0	G|0.933;C|0.067	0.067	strong	MYO16,NS,carcinoma,0,2	MYO16	285	2	NM_001198950	exon32	c.G4686C	p.P1562P	GTCCCCGCAGTAC	.	PASS	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	37	8	142222374	142222374	+	Silent	SNP	A	A	G	rs7017848	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	36	105	0	0.507042	0	A|0.359;G|0.641	0.641	strong	.	SLC45A4	71	.	NM_001080431	exon7	c.T2070C	p.G690G	GTTCCCACCGGCC	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234367	45234367	+	Missense_Mutation	SNP	A	A	T	rs200148949		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	8	62	1	0.133333	0.016129	.	.	weak	CDC27_ENST00000531206,NS,carcinoma,0,4	CDC27	337	4	NM_001114091	exon7	c.T754A	p.S252T	ATATGGAAGTTCC	.	scavenged	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	37	1	60505783	60505783	+	Missense_Mutation	SNP	G	G	C	rs12737449	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	75	78	0	0.986842	0	G|0.875;C|0.125	0.125	strong	.	C1orf87	55	.	NM_152377	exon5	c.C553G	p.L185V	ACTTGAGTTCTCT	.	PASS	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	37	8	10396056	10396056	+	Missense_Mutation	SNP	G	G	C	rs61743179	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	49	154	0	0.422414	0	G|0.909;C|0.091	0.091	strong	.	PRSS55	67	.	NM_198464	exon5	c.G812C	p.S271T	TCATAAGCTGGGG	.	PASS	Atlas-SNP
C20orf85	128602	hgsc.bcm.edu	37	20	56735759	56735759	+	Missense_Mutation	SNP	A	A	G	rs17440813	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	35	69	0	0.460526	0	A|0.936;G|0.064	0.064	strong	.	C20orf85	35	.	NM_178456	exon4	c.A295G	p.I99V	GGCTTCATCGGCT	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197070442	197070442	+	Missense_Mutation	SNP	G	G	T	rs3762271	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	43	89	0	0.477778	0	G|0.722;T|0.278	0.278	strong	.	ASPM	444	.	NM_018136	exon18	c.C7939A	p.L2647I	CTCTAAGGTGGAG	.	PASS	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	37	5	70858194	70858194	+	Silent	SNP	C	C	T	rs277941	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	81	120	0	0.964286	0	C|0.662;T|0.338	0.338	strong	.	BDP1	204	.	NM_018429	exon38	c.C7590T	p.R2530R	GAAACGCCTAAAA	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58978434	58978434	+	Silent	SNP	C	C	A	rs180770562	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	59	113	0	0.443609	0	C|0.996;A|0.004	0.004	strong	.	MPEG1	72	.	NM_001039396	exon1	c.G1905T	p.P635P	CTCTATCGGTTCT	.	PASS	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	37	8	142204326	142204326	+	Silent	SNP	C	C	G	rs1045248	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	26	33	0	0.65	0	C|0.550;G|0.450	0.450	strong	.	DENND3	127	.	NM_014957	exon23	c.C3591G	p.G1197G	GAAAGGCGAATAA	.	PASS	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	37	2	86693826	86693826	+	Missense_Mutation	SNP	T	T	C	rs34605051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	68	146	0	0.462585	0	T|0.867;C|0.133	0.133	strong	.	KDM3A	179	.	NM_001146688	exon10	c.T1339C	p.S447P	TCCCCATCGGATG	.	PASS	Atlas-SNP
LPCAT1	79888	hgsc.bcm.edu	37	5	1466919	1466919	+	Silent	SNP	G	G	A	rs2277006	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	60	114	0	0.545455	0	G|0.696;A|0.304	0.304	strong	LPCAT1,NS,carcinoma,0,1	LPCAT1	70	1	NM_024830	exon13	c.C1365T	p.T455T	GGTCACGGTGAGC	.	PASS	Atlas-SNP
SDHD	6392	hgsc.bcm.edu	37	11	111965573	111965573	+	Silent	SNP	T	T	C	rs200981457		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	4	178	0	0.0194175	0	.	.	weak	SDHD,NS,carcinoma,0,1	SDHD	19	1	NM_003002	exon4	c.C359C	p.A120A	ATGCCTTGCAGAA	.	scavenged	Atlas-SNP
BTNL9	153579	hgsc.bcm.edu	37	5	180472498	180472498	+	Silent	SNP	C	C	T	rs28677846	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	30	49	0	0.422535	0	C|0.460;G|0.000;T|0.539	0.539	strong	.	BTNL9	58	.	NM_152547	exon2	c.C9T	p.D3D	GGTGGACCTCTCA	.	PASS	Atlas-SNP
OR4D11	219986	hgsc.bcm.edu	37	11	59271637	59271637	+	Missense_Mutation	SNP	T	T	C	rs7120079	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	405	200	410	1	0.493827	0.00243902	T|0.696;C|0.304	0.304	strong	OR4D11,NS,carcinoma,0,1	OR4D11	62	1	NM_001004706	exon1	c.T589C	p.F197L	CTTGAGTTCTTGA	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57594552	57594552	+	Silent	SNP	C	C	T	rs139916336	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	90	165	0	0.491803	0	C|0.995;T|0.005	0.005	strong	.	LRP1	428	.	NM_002332	exon64	c.C10179T	p.C3393C	CATCTGCGATGGC	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291178	1291178	+	Missense_Mutation	SNP	T	T	C	rs112944038	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	51	118	1	0.294798	0.00847458	.	.	strong	TPSAB1,rectum,carcinoma,0,1	TPSAB1	24	1	NM_003294	exon3	c.T86C	p.V29A	AGCGAGTGGGCAT	.	scavenged	Atlas-SNP
RSC1A1	6248	hgsc.bcm.edu	37	1	15986547	15986547	+	Missense_Mutation	SNP	T	T	C	rs3766163	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	47	86	0	0.443396	0	T|0.708;C|0.292	0.292	strong	.	RSC1A1	29	.	NM_006511	exon1	c.T184C	p.F62L	GCTGAATTCCAGC	.	PASS	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	37	3	151112568	151112568	+	Silent	SNP	G	G	A	rs3732768	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	51	0	1	0	G|0.724;A|0.276	0.276	strong	MED12L,NS,carcinoma,+1,2	MED12L	271	2	NM_053002	exon37	c.G5628A	p.S1876S	CACATCGCAGCAG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105405599	105405599	+	Missense_Mutation	SNP	G	G	C	rs3742935	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	123	154	1	1	0.00649351	G|0.480;C|0.520	0.520	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,3	AHNAK2	719	3	NM_138420	exon7	c.C16189G	p.P5397A	GGGCAGGGAAGGA	.	PASS	Atlas-SNP
NIN	51199	hgsc.bcm.edu	37	14	51227000	51227000	+	Silent	SNP	A	A	G	rs4901055	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	12	45	0	0.342857	0	A|0.812;G|0.188	0.188	strong	.	NIN	475	.	NM_020921	exon17	c.T1974C	p.H658H	GTTCTCATGCCTT	.	PASS	Atlas-SNP
CAPRIN2	65981	hgsc.bcm.edu	37	12	30881809	30881809	+	Missense_Mutation	SNP	T	T	C	rs2304630	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	132	266	0	0.503817	0	T|0.384;C|0.616	0.616	strong	.	CAPRIN2	109	.	NM_023925	exon8	c.A1555G	p.M519V	TCTGCATGGAAGG	.	PASS	Atlas-SNP
HDHD1	8226	hgsc.bcm.edu	37	X	6995417	6995417	+	Silent	SNP	C	C	T	rs2379207	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	75	87	0	0.961538	0	C|0.748;0|0.031	.	strong	.	HDHD1	21	.	NM_001135565	exon4	c.G423A	p.A141A	GAACGACGCGGAC	.	PASS	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	37	5	137717213	137717213	+	Silent	SNP	G	G	A	rs10073922	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	47	93	0	0.559524	0	G|0.716;A|0.284	0.284	strong	KDM3B,NS,carcinoma,+2,2	KDM3B	177	2	NM_016604	exon6	c.G714A	p.E238E	TGGTGAGATCAAG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280614	152280614	+	Missense_Mutation	SNP	C	C	G	rs3120645	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	387	20	288	0	0.0516796	0	C|0.996;G|0.003;T|0.001	0.003	strong	FLG,right_upper_lobe,carcinoma,+2,1	FLG	900	1	NM_002016	exon3	c.G6748C	p.E2250Q	GTCCCTCACTGTC	.	scavenged	Atlas-SNP
SFRP4	6424	hgsc.bcm.edu	37	7	37947103	37947103	+	Missense_Mutation	SNP	C	C	T	rs1802074	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	258	124	276	0	0.48062	0	C|0.744;T|0.256	0.256	strong	.	SFRP4	66	.	NM_003014	exon6	c.G1019A	p.R340K	TTTGTTCTCTTCT	.	PASS	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	37	1	226019653	226019653	+	Silent	SNP	G	G	A	rs1131873	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	28	71	0	0.491228	0	G|0.831;A|0.169	0.169	strong	.	EPHX1	57	.	NM_001136018	exon3	c.G357A	p.K119K	GACTAAGATTGAA	.	PASS	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	37	1	156518379	156518379	+	Missense_Mutation	SNP	G	G	A	rs744224	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	105	120	1	0.981308	0.00833333	G|0.683;A|0.317	0.317	strong	IQGAP3,brain,primitive_neuroectodermal_tumour-medulloblastoma,+1,1	IQGAP3	146	1	NM_178229	exon17	c.C1987T	p.R663C	CTGGACGCTGTTT	.	PASS	Atlas-SNP
IL17RE	132014	hgsc.bcm.edu	37	3	9952706	9952706	+	Silent	SNP	A	A	G	rs279572	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	62	110	1	0.96875	0.00909091	A|0.492;G|0.508	0.508	strong	.	IL17RE	62	.	NM_153483	exon10	c.A1080G	p.T360T	TGCCACAGCTCGA	.	PASS	Atlas-SNP
ADARB2	105	hgsc.bcm.edu	37	10	1230968	1230968	+	Missense_Mutation	SNP	C	C	T	rs2271275	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	58	98	0	0.604167	0	C|0.458;T|0.542	0.542	strong	ADARB2,rectum,carcinoma,0,1	ADARB2	95	1	NM_018702	exon9	c.G1876A	p.A626T	CCTCGGCGTCACT	.	PASS	Atlas-SNP
DAPL1	92196	hgsc.bcm.edu	37	2	159672252	159672252	+	Silent	SNP	G	G	A	rs61740878	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	47	108	0	0.427273	0	G|0.880;A|0.120	0.120	strong	.	DAPL1	11	.	NM_001017920	exon4	c.G243A	p.A81A	CATGGCGCATCAA	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	37	19	11170839	11170839	+	Silent	SNP	T	T	C	rs7275	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	31	104	0	0.449275	0	T|0.776;C|0.224	0.224	strong	SMARCA4_ENST00000358026,caecum,carcinoma,0,2	SMARCA4	502	2	NM_001128849	exon35	c.T4983C	p.D1661D	TGACGATGACAGT	.	PASS	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	37	9	98238379	98238379	+	Silent	SNP	A	A	G	rs1805155	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	21	38	0	0.5	0	A|0.874;G|0.126	0.126	strong	.	PTCH1	1850	.	NM_000264	exon12	c.T1665C	p.N555N	TGTGACATTGCTG	.	PASS	Atlas-SNP
HHLA1	10086	hgsc.bcm.edu	37	8	133111181	133111181	+	Silent	SNP	G	G	A	rs72715366	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	20	41	0	0.555556	0	G|0.901;A|0.099	0.099	strong	.	HHLA1	35	.	NM_001145095	exon4	c.C228T	p.S76S	AAGCGCGGACAGA	.	PASS	Atlas-SNP
LRMP	4033	hgsc.bcm.edu	37	12	25243115	25243115	+	Missense_Mutation	SNP	G	G	C	rs1908946	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	79	0	1	0	G|0.535;C|0.465	0.465	strong	.	LRMP	51	.	NM_001204126	exon12	c.G590C	p.C197S	CTAACTGTTTAAA	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52774158	52774158	+	Silent	SNP	G	G	A	rs951772	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	52	85	0	0.619048	0	G|0.688;A|0.312	0.312	strong	.	KRT84	61	.	NM_033045	exon7	c.C1413T	p.G471G	CTCCTCGCCCTCC	.	PASS	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	37	14	75230953	75230953	+	Missense_Mutation	SNP	C	C	T	rs45599947	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	54	100	0	0.509434	0	C|0.959;T|0.041	0.041	strong	.	YLPM1	298	.	NM_019589	exon1	c.C761T	p.P254L	CCCCCCCTGGAAA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179421694	179421694	+	Missense_Mutation	SNP	A	A	G	rs9808377	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	81	158	0	0.442623	0	A|0.549;G|0.451	0.451	strong	.	TTN	18412	.	NM_001267550	exon330	c.T88187C	p.I29396T	GAGATGATGAATT	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36869396	36869396	+	Silent	SNP	G	G	A	rs41282822	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	35	77	0	0.479452	0	G|0.961;A|0.039	0.039	strong	.	KIAA1755	145	.	NM_001029864	exon3	c.C1137T	p.D379D	CAGTGCGTCCTCA	.	PASS	Atlas-SNP
PPAN-P2RY11	692312	hgsc.bcm.edu	37	19	10224526	10224526	+	Missense_Mutation	SNP	C	C	T	rs3745600	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	69	0	1	0	C|0.631;T|0.369	0.369	strong	PPAN-P2RY11,caecum,carcinoma,+2,2	PPAN-P2RY11	81	2	NM_001198690	exon13	c.C1559T	p.P520L	CTGCGCCCTGACG	.	PASS	Atlas-SNP
RREB1	6239	hgsc.bcm.edu	37	6	7246998	7246998	+	Missense_Mutation	SNP	G	G	A	rs2281833	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	11	10	0	0.611111	0	G|0.815;A|0.185	0.185	strong	RREB1_ENST00000379938,NS,carcinoma,0,4	RREB1	242	4	NM_001003699	exon12	c.G4315A	p.G1439R	GGCGCCGGGGGCG	.	PASS	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	37	3	19190241	19190241	+	Silent	SNP	G	G	C	rs34370450	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	46	140	0	0.356589	0	G|0.898;C|0.102	0.102	strong	.	KCNH8	189	.	NM_144633	exon1	c.G30C	p.P10P	GGCGCCGCAAAAC	.	PASS	Atlas-SNP
PDIK1L	149420	hgsc.bcm.edu	37	1	26448849	26448849	+	Silent	SNP	T	T	C	rs17356867	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	42	100	0	0.4	0	T|0.836;C|0.164	0.164	strong	.	PDIK1L	19	.	NM_001243532	exon3	c.T807C	p.Y269Y	GAGTTATGTAAAA	.	PASS	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	37	17	4576620	4576620	+	Silent	SNP	C	C	T	rs55677157	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	76	151	0	0.527778	0	C|0.892;T|0.108	0.108	strong	.	PELP1	102	.	NM_014389	exon15	c.G1770A	p.P590P	AGGAGACGGGGCC	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183094547	183094547	+	Missense_Mutation	SNP	T	T	C	rs20558	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	69	137	0	0.5	0	T|0.490;C|0.510	0.510	strong	.	LAMC1	176	.	NM_002293	exon15	c.T2663C	p.L888P	GCAATCTGTATGG	.	PASS	Atlas-SNP
PLOD1	5351	hgsc.bcm.edu	37	1	12012748	12012748	+	Missense_Mutation	SNP	G	G	C	rs188165334	bycluster;by1000genomes;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	42	105	0	0.4375	0	G|1.000;T|0.000	.	alt	PLOD1_ENST00000429000,colon,carcinoma,0,2	PLOD1	75	2	NM_000302	exon5	c.G535C	p.D179H	GACAGCGATCAGC	.	PASS	Atlas-SNP
PRSS57	400668	hgsc.bcm.edu	37	19	687078	687078	+	Silent	SNP	G	G	A	rs72618587	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	120	217	1	0.519481	0.00460829	G|0.928;A|0.072	0.072	strong	.	PRSS57	18	.	NM_214710	exon4	c.C492T	p.F164F	AGACACGAAGCCC	.	PASS	Atlas-SNP
SCNN1B	6338	hgsc.bcm.edu	37	16	23360199	23360199	+	Silent	SNP	T	T	C	rs238547	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	92	187	0	0.541176	0	T|0.281;C|0.719	0.719	strong	.	SCNN1B	81	.	NM_000336	exon2	c.T279C	p.P93P	CTTCCCTGCCGTC	.	PASS	Atlas-SNP
FBXL5	26234	hgsc.bcm.edu	37	4	15640168	15640168	+	Silent	SNP	C	C	T	rs3182730	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	34	99	0	0.333333	0	T|0.112;G|0.000;C|0.888	0.112	strong	.	FBXL5	52	.	NM_001193534	exon4	c.G546A	p.K182K	AAAAAACTTCTGT	.	PASS	Atlas-SNP
LRIT3	345193	hgsc.bcm.edu	37	4	110791526	110791526	+	Missense_Mutation	SNP	A	A	G	rs35997283	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	71	122	0	0.5	0	A|0.996;G|0.004	0.004	strong	.	LRIT3	107	.	NM_198506	exon4	c.A1621G	p.I541V	GTAACCATAGATG	.	PASS	Atlas-SNP
FIBCD1	84929	hgsc.bcm.edu	37	9	133779563	133779563	+	Missense_Mutation	SNP	C	C	T	rs138892175		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	61	96	0	0.521368	0	C|1.000;T|0.000	0.000	weak	FIBCD1,NS,carcinoma,+1,2	FIBCD1	34	2	NM_001145106	exon8	c.G1274A	p.R425H	GCACCGCGCAGGT	.	PASS	Atlas-SNP
SVOP	55530	hgsc.bcm.edu	37	12	109309571	109309571	+	Silent	SNP	C	C	T	rs76609278	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	17	20	0	0.548387	0	C|0.954;T|0.046	0.046	strong	.	SVOP	16	.	NM_018711	exon14	c.G1269A	p.P423P	GATGAACGGAGTG	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72344509	72344509	+	Missense_Mutation	SNP	G	G	A	rs7227263	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	38	91	0	0.417582	0	G|0.910;A|0.090	0.090	strong	.	ZNF407	231	.	NM_001146190	exon1	c.G1534A	p.G512R	GACTCCGGGCTGC	.	PASS	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	37	7	2645552	2645552	+	Missense_Mutation	SNP	A	A	G	rs2293407	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	88	197	0	0.437811	0	A|0.612;G|0.388	0.388	strong	.	IQCE	66	.	NM_152558	exon20	c.A1786G	p.T596A	CAGGCCACGGGCA	.	PASS	Atlas-SNP
SYNGR2	9144	hgsc.bcm.edu	37	17	76167047	76167047	+	Silent	SNP	C	C	T	rs1062668	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	56	135	0	0.46281	0	C|0.889;T|0.111	0.111	strong	SYNGR2,NS,carcinoma,+2,1	SYNGR2	17	1	NM_004710	exon2	c.C249T	p.A83A	CTCGGCCTTCTTC	.	PASS	Atlas-SNP
TAS2R16	50833	hgsc.bcm.edu	37	7	122635024	122635024	+	Missense_Mutation	SNP	C	C	T	rs860170	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	83	144	0	0.482558	0	T|0.736;G|0.005	0.736	strong	.	TAS2R16	57	.	NM_016945	exon1	c.G665A	p.R222H	GTGAAGCGCGCTT	.	PASS	Atlas-SNP
LSP1	4046	hgsc.bcm.edu	37	11	1902768	1902768	+	Missense_Mutation	SNP	G	G	A	rs621679	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	68	115	0	0.450331	0	G|0.638;A|0.362	0.362	strong	.	LSP1	59	.	NM_001242932	exon4	c.G682A	p.A228T	CAGGGCGCCTTGG	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2408530	2408530	+	Missense_Mutation	SNP	G	G	A	rs62120714	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	35	79	0	0.448718	0	G|0.900;A|0.100	0.100	strong	.	TMPRSS9	79	.	NM_182973	exon7	c.G917A	p.R306Q	TCGGCCGGCACAT	.	PASS	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	37	8	105361803	105361803	+	Silent	SNP	C	C	T	rs117086639	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	45	84	0	0.5625	0	C|0.989;T|0.011	0.011	strong	.	.	.	.	NM_030788	exon2	c.C1023T	p.H341H	ACTGCACGGAGAG	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80041466	80041466	+	Silent	SNP	G	G	A	rs2229425	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	26	53	0	0.472727	0	G|0.916;A|0.084	0.084	strong	.	FASN	154	.	NM_004104	exon31	c.C5268T	p.S1756S	CCTCACGCTGGCC	.	PASS	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	37	10	88277457	88277457	+	Missense_Mutation	SNP	C	C	T	rs10887621	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	67	115	0	0.51145	0	C|0.796;T|0.204	0.204	strong	.	WAPAL	81	.	NM_015045	exon2	c.G370A	p.V124I	CTTCAACGACCAC	.	PASS	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	37	5	149460553	149460553	+	Silent	SNP	A	A	G	rs216123	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	158	168	0	0.993711	0	A|0.588;G|0.411	0.411	strong	.	CSF1R	250	.	NM_005211	exon3	c.T84C	p.P28P	CAGCTCAGGGACA	.	PASS	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	37	11	99690376	99690376	+	Nonsense_Mutation	SNP	C	C	T	rs12292659	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	130	172	0	0.534979	0	C|0.822;T|0.178	0.178	strong	.	CNTN5	324	.	NM_001243270	exon3	c.C157T	p.R53X	AGACCACGATACA	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82789647	82789647	+	Silent	SNP	A	A	G	rs4470745	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	93	220	1	0.465	0.00454545	A|0.691;G|0.309	0.309	strong	.	VCAN	498	.	NM_004385	exon5	c.A645G	p.V215V	CAGAGTAGGCTGT	.	PASS	Atlas-SNP
ELOVL2	54898	hgsc.bcm.edu	37	6	11005686	11005686	+	Silent	SNP	G	G	A	rs2295601	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	103	108	0	0.990385	0	G|0.781;A|0.219	0.219	strong	ELOVL2,NS,carcinoma,0,1	ELOVL2	40	1	NM_017770	exon3	c.C174T	p.N58N	AGGTCTGTTCTTC	.	PASS	Atlas-SNP
PTPLA	9200	hgsc.bcm.edu	37	10	17636309	17636309	+	Missense_Mutation	SNP	G	G	A	rs1053926	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	80	202	0	0.446927	0	G|0.764;A|0.236	0.236	strong	.	PTPLA	34	.	NM_014241	exon6	c.C679T	p.H227Y	TCACATGCGGCAA	.	PASS	Atlas-SNP
DENND2C	163259	hgsc.bcm.edu	37	1	115164554	115164554	+	Missense_Mutation	SNP	C	C	T	rs56861557	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	58	118	0	0.557692	0	C|0.960;T|0.040	0.040	strong	.	DENND2C	105	.	NM_001256404	exon7	c.G1189A	p.G397S	CTTCACCAGCTCG	.	PASS	Atlas-SNP
KCTD17	79734	hgsc.bcm.edu	37	22	37458571	37458571	+	Silent	SNP	C	C	T	rs142739650	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	44	71	0	0.55	0	C|0.999;T|0.001	0.001	strong	.	KCTD17	17	.	NM_024681	exon8	c.C831T	p.Y277Y	CTGTTACAAGCCA	.	PASS	Atlas-SNP
CER1	9350	hgsc.bcm.edu	37	9	14722477	14722477	+	Missense_Mutation	SNP	G	G	C	rs3747532	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	106	185	1	0.557895	0.00540541	G|0.572;C|0.428	0.428	strong	.	CER1	41	.	NM_005454	exon1	c.C194G	p.A65G	CTGGTGGCTACAA	.	PASS	Atlas-SNP
COL9A3	1299	hgsc.bcm.edu	37	20	61463522	61463522	+	Missense_Mutation	SNP	C	C	A	rs751557	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	62	150	0	0.466165	0	T|0.003;G|0.006	.	strong	COL9A3,caecum,carcinoma,0,1	COL9A3	70	1	NM_001853	exon25	c.C1304A	p.A435E	GTGCCGCAGGCCC	.	PASS	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72987638	72987638	+	Missense_Mutation	SNP	G	G	A	rs13268757	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	11	20	0	0.52381	0	G|0.872;A|0.128	0.128	strong	.	TRPA1	256	.	NM_007332	exon1	c.C7T	p.R3C	GGCTGCGCTTCAT	.	PASS	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	37	6	33419593	33419593	+	Silent	SNP	G	G	A	rs372190836		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	46	54	1	0.554217	0.0185185	.	.	weak	SYNGAP1,caecum,carcinoma,0,1	SYNGAP1	202	1	NM_006772	exon19	c.G3942A	p.P1314P	CCCACCGTGGAAT	.	scavenged	Atlas-SNP
TNFAIP2	7127	hgsc.bcm.edu	37	14	103601637	103601637	+	Silent	SNP	C	C	T	rs2234147	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	34	93	0	0.485714	0	C|0.993;T|0.007	0.007	strong	.	TNFAIP2	53	.	NM_006291	exon11	c.C1905T	p.D635D	CTTGGACGTCAGC	.	PASS	Atlas-SNP
BPIFB6	128859	hgsc.bcm.edu	37	20	31627291	31627291	+	Missense_Mutation	SNP	A	A	G	rs4911287	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	39	97	0	0.428571	0	A|0.477;G|0.523	0.523	strong	BPIL3,NS,carcinoma,-2,1	.	.	1	NM_174897	exon10	c.A1039G	p.S347G	TGGCGGAGCAAGG	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77690563	77690563	+	Silent	SNP	T	T	C	rs16939357	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	45	105	0	0.441176	0	T|0.674;C|0.326	0.326	strong	.	ZFHX4	878	.	NM_024721	exon4	c.T3213C	p.H1071H	GAAGCATCAGCAG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8993383	8993383	+	Silent	SNP	G	G	C	rs117289107	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	62	120	0	0.48062	0	G|0.987;C|0.013	0.013	strong	MUC16_ENST00000397910,NS,carcinoma,-2,1	MUC16	4315	1	NM_024690	exon66	c.C41706G	p.L13902L	GACATAGAGACTG	.	PASS	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	37	6	165713917	165713917	+	Missense_Mutation	SNP	C	C	T	rs17852379	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	35	64	0	0.432099	0	C|0.874;T|0.126	0.126	strong	C6orf118,colon,carcinoma,0,1	C6orf118	116	1	NM_144980	exon3	c.G812A	p.G271E	ACTTTTCCAAAGA	.	PASS	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	37	1	109807099	109807099	+	Silent	SNP	G	G	A	rs6689614	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	38	80	0	0.452381	0	G|0.632;A|0.368	0.368	strong	CELSR2,NS,adenoma,0,1	CELSR2	228	1	NM_001408	exon11	c.G5313A	p.P1771P	TACGCCGGAGGGG	.	PASS	Atlas-SNP
TRPV3	162514	hgsc.bcm.edu	37	17	3446885	3446885	+	Missense_Mutation	SNP	T	T	C	rs322937	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	56	114	0	0.430769	0	T|0.714;C|0.286	0.286	strong	.	TRPV3	85	.	NM_001258205	exon5	c.A349G	p.R117G	GCCGCCTCTTTTT	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85960395	85960395	+	Silent	SNP	A	A	G	rs4933975	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	82	205	0	0.401961	0	A|0.487;G|0.513	0.513	strong	CDHR1,NS,carcinoma,+2,1	CDHR1	122	1	NM_001171971	exon6	c.A477G	p.A159A	CCATGCAGTGGAC	.	PASS	Atlas-SNP
EPHA7	2045	hgsc.bcm.edu	37	6	94067981	94067981	+	Silent	SNP	C	C	T	rs164544	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	42	109	0	0.446809	0	C|0.322;T|0.678	0.678	strong	.	EPHA7	251	.	NM_004440	exon4	c.G981A	p.A327A	TGTGCACGCAACG	.	PASS	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	37	19	39955533	39955533	+	Silent	SNP	G	G	A	rs2304217	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	63	131	0	0.488372	0	G|0.846;A|0.154	0.154	strong	.	SUPT5H	119	.	NM_003169	exon10	c.G720A	p.E240E	CATTGAGGGGGTG	.	PASS	Atlas-SNP
DNAJB3	414061	hgsc.bcm.edu	37	2	234652347	234652347	+	Silent	SNP	C	C	G	rs13009407	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	72	116	0	0.517986	0	C|0.867;G|0.133	0.133	strong	.	.	.	.	NM_001001394	exon1	c.G216C	p.G72G	CTCCGCCCCCGCC	.	PASS	Atlas-SNP
DYM	54808	hgsc.bcm.edu	37	18	46623854	46623854	+	Missense_Mutation	SNP	T	T	C	rs146000214	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	38	72	0	0.413043	0	T|0.999;C|0.001	0.001	strong	.	DYM	52	.	NM_017653	exon16	c.A1778G	p.Q593R	CCAGCTTGCAGCA	.	PASS	Atlas-SNP
KRT6B	3854	hgsc.bcm.edu	37	12	52841179	52841179	+	Missense_Mutation	SNP	T	T	C	rs61746354	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	48	122	0	0.444444	0	T|0.961;C|0.039	0.039	strong	.	KRT6B	90	.	NM_005555	exon9	c.A1490G	p.Y497C	CCGCCATAGCCAC	.	PASS	Atlas-SNP
PLEKHG4	25894	hgsc.bcm.edu	37	16	67320920	67320920	+	Silent	SNP	C	C	T	rs785029	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	41	69	0	0.554054	0	C|0.960;T|0.040	0.040	strong	.	PLEKHG4	94	.	NM_001129728	exon18	c.C2943T	p.L981L	TGGTCTCACTGAG	.	PASS	Atlas-SNP
SMIM11	54065	hgsc.bcm.edu	37	21	35757787	35757787	+	Silent	SNP	C	C	T	rs61747964	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	135	241	0	0.513308	0	C|0.971;T|0.029	0.029	strong	.	.	.	.	NM_058182	exon3	c.C24T	p.H8H	TGAGCACGTGCCC	.	PASS	Atlas-SNP
ALG6	29929	hgsc.bcm.edu	37	1	63881583	63881583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	294	138	285	0	0.469388	0	.	.	none	.	ALG6	33	.	NM_013339	exon11	c.A942G	p.I314M	ATGCATAAAATTA	.	PASS	Atlas-SNP
PBK	55872	hgsc.bcm.edu	37	8	27667969	27667969	+	Silent	SNP	C	C	G	rs2294092	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	76	132	0	0.510067	0	C|0.567;G|0.433	0.433	strong	.	PBK	29	.	NM_018492	exon8	c.G822C	p.A274A	TCCCAACGCTGCA	.	PASS	Atlas-SNP
C20orf194	25943	hgsc.bcm.edu	37	20	3285126	3285126	+	Silent	SNP	A	A	T	rs2254916	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	54	85	0	0.568421	0	A|0.732;T|0.268	0.268	strong	.	C20orf194	83	.	NM_001009984	exon21	c.T1743A	p.I581I	CTTGGAAATGATG	.	PASS	Atlas-SNP
CDC25C	995	hgsc.bcm.edu	37	5	137654980	137654980	+	Silent	SNP	G	G	A	rs111911741	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	67	131	0	0.432258	0	G|0.999;A|0.001	0.001	strong	.	CDC25C	37	.	NM_001790	exon7	c.C543T	p.N181N	TCCTAGGTTTGGA	.	PASS	Atlas-SNP
DHX30	22907	hgsc.bcm.edu	37	3	47891036	47891036	+	Silent	SNP	C	C	T	rs9871162	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	78	136	0	0.541667	0	C|0.949;T|0.051	0.051	strong	.	DHX30	101	.	NM_138615	exon20	c.C3183T	p.T1061T	GTCGACCATTAAC	.	PASS	Atlas-SNP
WDFY2	115825	hgsc.bcm.edu	37	13	52313195	52313195	+	Silent	SNP	C	C	T	rs1885854	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	49	138	0	0.485149	0	C|0.887;T|0.113	0.113	strong	.	WDFY2	36	.	NM_052950	exon7	c.C609T	p.T203T	GGTGACCGCTCTC	.	PASS	Atlas-SNP
TMEM143	55260	hgsc.bcm.edu	37	19	48836673	48836673	+	Silent	SNP	G	G	T	rs3826828	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	23	39	0	0.5	0	G|0.645;T|0.355	0.355	strong	.	TMEM143	29	.	NM_018273	exon8	c.C1183A	p.R395R	CCGACCGGAGCCA	.	PASS	Atlas-SNP
CHML	1122	hgsc.bcm.edu	37	1	241797791	241797791	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	23	55	0	0.442308	0	.	.	none	.	CHML	82	.	NM_001821	exon1	c.T1278C	p.G426G	TCTTTGACCAAAG	.	PASS	Atlas-SNP
BRD3	8019	hgsc.bcm.edu	37	9	136915508	136915508	+	Silent	SNP	C	C	T	rs2301576	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	29	51	0	0.54717	0	C|0.923;T|0.077	0.077	strong	.	BRD3	82	.	NM_007371	exon5	c.G702A	p.P234P	GACAGGCGGCGTA	.	PASS	Atlas-SNP
CCNY	219771	hgsc.bcm.edu	37	10	35772402	35772402	+	Silent	SNP	G	G	A	rs3802509	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	359	173	317	0	0.481894	0	G|0.564;A|0.436	0.436	strong	CCNY,rectum,carcinoma,+1,1	CCNY	22	1	NM_145012	exon2	c.G225A	p.T75T	TCAGACGGACGGT	.	PASS	Atlas-SNP
OR2M5	127059	hgsc.bcm.edu	37	1	248309020	248309020	+	Missense_Mutation	SNP	G	G	A	rs139290187	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	407	11	376	0	0.027027	0	G|0.996;A|0.004	0.004	strong	OR2M5,NS,carcinoma,0,2	OR2M5	117	2	NM_001004690	exon1	c.G571A	p.D191N	TGCAATGACACAT	.	scavenged	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24413159	24413159	+	Silent	SNP	T	T	C	rs6424152	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	38	69	0	0.5	0	T|0.602;C|0.398	0.398	strong	.	MYOM3	131	.	NM_152372	exon15	c.A1773G	p.E591E	GATGGGTTCGCTG	.	PASS	Atlas-SNP
CD226	10666	hgsc.bcm.edu	37	18	67531642	67531642	+	Missense_Mutation	SNP	T	T	C	rs763361	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	49	124	0	0.494949	0	C|0.456;N|0.000	0.456	strong	CD226,NS,adenoma,0,1	CD226	51	1	NM_006566	exon7	c.A919G	p.S307G	GTTGACTGGTAGA	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24409165	24409165	+	Silent	SNP	C	C	T	rs4320728	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	45	70	0	0.5625	0	C|0.844;T|0.156	0.156	strong	.	MYOM3	131	.	NM_152372	exon17	c.G2010A	p.E670E	ACAAAACTCGTAC	.	PASS	Atlas-SNP
COLEC11	78989	hgsc.bcm.edu	37	2	3673609	3673609	+	Silent	SNP	A	A	G	rs76490827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	41	58	0	0.554054	0	A|0.994;G|0.006	0.006	strong	.	COLEC11	93	.	NM_199235	exon4	c.A120G	p.S40S	GCAGTCACAGCCA	.	PASS	Atlas-SNP
BTBD16	118663	hgsc.bcm.edu	37	10	124096160	124096160	+	Missense_Mutation	SNP	A	A	G	rs10510108	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	58	93	0	0.487395	0	A|0.970;G|0.030	0.030	strong	.	BTBD16	44	.	NM_144587	exon15	c.A1415G	p.Q472R	TCAAGCAGAAGTT	.	PASS	Atlas-SNP
OAF	220323	hgsc.bcm.edu	37	11	120099791	120099791	+	Silent	SNP	C	C	T	rs2465654	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	71	119	0	0.473333	0	C|0.869;T|0.131	0.131	strong	.	OAF	12	.	NM_178507	exon4	c.C762T	p.F254F	CAGCTTCGACTTC	.	PASS	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	37	6	165706935	165706935	+	Missense_Mutation	SNP	C	C	G	rs9459350	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	67	147	0	0.426752	0	C|0.861;G|0.139	0.139	strong	.	C6orf118	116	.	NM_144980	exon6	c.G1087C	p.V363L	ATGCCACCTCCAT	.	PASS	Atlas-SNP
OPRD1	4985	hgsc.bcm.edu	37	1	29189597	29189597	+	Silent	SNP	C	C	T	rs2234918	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	32	62	0	0.561404	0	C|0.504;T|0.496	0.496	strong	OPRD1,rectum,carcinoma,0,1	OPRD1	36	1	NM_000911	exon3	c.C921T	p.G307G	GCTGGGCTACGCC	.	PASS	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	37	8	145623963	145623963	+	Silent	SNP	G	G	A	rs4317614	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	119	278	0	0.416084	0	G|0.629;A|0.371	0.371	strong	.	CPSF1	92	.	NM_013291	exon18	c.C1704T	p.D568D	GCGGCCGTCGTCG	.	PASS	Atlas-SNP
SLC15A1	6564	hgsc.bcm.edu	37	13	99356612	99356612	+	Silent	SNP	A	A	G	rs1339067	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	113	235	0	0.55122	0	A|0.346;G|0.654	0.654	strong	.	SLC15A1	92	.	NM_005073	exon17	c.T1347C	p.A449A	AGTTACAGCAGTG	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24421474	24421474	+	Missense_Mutation	SNP	G	G	A	rs6678540	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	57	119	0	0.438462	0	G|0.633;A|0.367	0.367	strong	.	MYOM3	131	.	NM_152372	exon9	c.C797T	p.T266M	CCAAACGTCGATC	.	PASS	Atlas-SNP
FHL2	2274	hgsc.bcm.edu	37	2	105977776	105977776	+	Silent	SNP	G	G	A	rs3087523	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	47	88	0	0.489583	0	G|0.921;A|0.079	0.079	strong	FHL2,colon,carcinoma,0,1	FHL2	18	1	NM_001039492	exon7	c.C804T	p.D268D	GATGTCGTCCCTC	.	PASS	Atlas-SNP
OSBP2	23762	hgsc.bcm.edu	37	22	31266546	31266546	+	Silent	SNP	T	T	C	rs2301816	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	36	92	0	0.473684	0	T|0.307;C|0.693	0.693	strong	.	OSBP2	52	.	NM_030758	exon3	c.T984C	p.A328A	CGGCGCTGCACTC	.	PASS	Atlas-SNP
SPARCL1	8404	hgsc.bcm.edu	37	4	88403609	88403609	+	Silent	SNP	G	G	A	rs72654103	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	22	58	0	0.458333	0	G|0.976;A|0.024	0.024	strong	.	SPARCL1	59	.	NM_004684	exon8	c.C1635T	p.H545H	ACCAGCGTGTTCA	.	PASS	Atlas-SNP
ASNS	440	hgsc.bcm.edu	37	7	97483921	97483921	+	Silent	SNP	G	G	C	rs1049677	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	93	201	0	0.508197	0	G|0.942;C|0.058	0.058	strong	.	ASNS	97	.	NM_133436	exon10	c.C1209G	p.L403L	TGCGCGGAGAACA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415229	105415229	+	Missense_Mutation	SNP	T	T	C	rs10134675	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	78	190	1	1	0.00526316	G|0.002;T|0.998	.	strong	AHNAK2_ENST00000333244,brain,glioma,0,1	AHNAK2	719	1	NM_138420	exon7	c.A6559G	p.M2187V	GACTCATGTCGGC	.	PASS	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	37	16	2028220	2028220	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	50	90	0	0.462963	0	.	.	none	.	TBL3	54	.	NM_006453	exon20	c.A2133G	p.K711K	CCAGAAAGGTTGG	.	PASS	Atlas-SNP
ALLC	55821	hgsc.bcm.edu	37	2	3729254	3729254	+	Missense_Mutation	SNP	C	C	T	rs13426642	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	71	80	0	0.972603	0	C|0.801;T|0.199	0.199	strong	.	ALLC	61	.	NM_018436	exon6	c.C329T	p.T110I	GAGGAACCAGGAC	.	PASS	Atlas-SNP
LRCH4	4034	hgsc.bcm.edu	37	7	100176362	100176362	+	Missense_Mutation	SNP	C	C	T	rs52833865	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	51	133	0	0.46789	0	C|0.994;T|0.006	0.006	strong	.	LRCH4	53	.	NM_002319	exon5	c.G646A	p.V216I	GGGAGACGCGGTT	.	PASS	Atlas-SNP
HPS4	89781	hgsc.bcm.edu	37	22	26861473	26861473	+	Missense_Mutation	SNP	T	T	A	rs34962745	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	80	0	0.457143	0	T|0.993;A|0.007	0.007	strong	.	HPS4	123	.	NM_022081	exon10	c.A751T	p.T251S	CTTTGGTCACAAA	.	PASS	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	37	11	77614592	77614592	+	Silent	SNP	C	C	T	rs12532775	by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	8	210	8	0.038835	0.0380952	.	.	weak	INTS4,NS,carcinoma,0,2	INTS4	89	2	NM_033547	exon17	c.G2091A	p.A697A	CTGTTTCGCTGCT	.	scavenged	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	7008591	7008591	+	Missense_Mutation	SNP	T	T	C	rs662471	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	40	75	0	0.506329	0	T|0.753;C|0.247	0.247	strong	.	LAMA1	458	.	NM_005559	exon28	c.A4018G	p.M1340V	CCTCCATTGAAAT	.	PASS	Atlas-SNP
PTGIR	5739	hgsc.bcm.edu	37	19	47126807	47126807	+	Missense_Mutation	SNP	G	G	T	rs138619017	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	27	51	0	0.415385	0	G|0.999;T|0.001	0.001	strong	.	PTGIR	31	.	NM_000960	exon2	c.C676A	p.P226T	GCCGTGGACCCAG	.	PASS	Atlas-SNP
ANXA2	302	hgsc.bcm.edu	37	15	60653205	60653205	+	Missense_Mutation	SNP	C	C	A	rs17845226	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	416	186	420	0	0.447115	0	C|0.912;A|0.088	0.088	strong	.	ANXA2	28	.	NM_001002858	exon5	c.G346T	p.V116L	AAATCACCGTCTC	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187522528	187522528	+	Silent	SNP	C	C	T	rs2289550	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	70	146	0	0.416667	0	C|0.934;T|0.066	0.066	strong	FAT1,NS,carcinoma,-1,3	FAT1	500	3	NM_005245	exon21	c.G11535A	p.T3845T	ATTTTCCGTCAGA	.	PASS	Atlas-SNP
ATP5SL	55101	hgsc.bcm.edu	37	19	41944270	41944270	+	Missense_Mutation	SNP	T	T	C	rs2231939	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	51	96	0	0.46789	0	T|0.996;C|0.004	0.004	strong	.	ATP5SL	20	.	NM_001167867	exon2	c.A86G	p.H29R	AGGCGATGGATGC	.	PASS	Atlas-SNP
C21orf2	755	hgsc.bcm.edu	37	21	45751822	45751822	+	Missense_Mutation	SNP	G	G	A	rs2277809	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	100	169	0	0.512821	0	G|0.974;A|0.026	0.026	strong	.	C21orf2	10	.	NM_004928	exon5	c.C449T	p.T150I	TGGCCTGTGCCCT	.	PASS	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	37	10	27322306	27322306	+	Missense_Mutation	SNP	C	C	T	rs146819984	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	53	65	0	0.602273	0	C|0.991;T|0.009	0.009	strong	.	ANKRD26	179	.	NM_014915	exon25	c.G3655A	p.V1219I	CAACAACCTGATA	.	PASS	Atlas-SNP
MUC20	200958	hgsc.bcm.edu	37	3	195456561	195456561	+	Missense_Mutation	SNP	C	C	G	rs3762739	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	36	74	0	0.268657	0	C|0.780;G|0.220	0.220	strong	.	MUC20	84	.	NM_152673	exon4	c.C1499G	p.S500C	TGGCTTCCCCGGA	.	PASS	Atlas-SNP
CARD14	79092	hgsc.bcm.edu	37	17	78178916	78178916	+	Silent	SNP	C	C	T	rs61757652	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	65	82	0	0.565217	0	C|0.928;T|0.072	0.072	strong	.	CARD14	98	.	NM_024110	exon18	c.C2481T	p.P827P	CCGGCCCCGGCCT	.	PASS	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	37	17	45490251	45490251	+	Silent	SNP	C	C	T	rs3883318	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	68	156	1	0.393064	0.00641026	C|0.885;T|0.115	0.115	strong	C17orf57,NS,carcinoma,0,1	.	.	1	NM_152347	exon22	c.C2391T	p.F797F	GGACTTCAATGAA	.	scavenged	Atlas-SNP
RAD51AP2	729475	hgsc.bcm.edu	37	2	17698678	17698678	+	Silent	SNP	A	A	G	rs665312	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	40	60	0	0.465116	0	A|0.397;G|0.603	0.603	strong	.	RAD51AP2	134	.	NM_001099218	exon1	c.T1005C	p.S335S	TTGGCTACTGAGT	.	PASS	Atlas-SNP
POLR3E	55718	hgsc.bcm.edu	37	16	22319517	22319517	+	Missense_Mutation	SNP	T	T	G	rs2347	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	46	94	0	0.528736	0	T|0.958;G|0.042	0.042	strong	.	POLR3E	62	.	NM_001258033	exon4	c.T136G	p.S46A	CACCTCTCAGCCA	.	PASS	Atlas-SNP
PLOD3	8985	hgsc.bcm.edu	37	7	100850144	100850144	+	Silent	SNP	G	G	A	rs11546151	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	74	150	0	0.536232	0	G|0.978;A|0.022	0.022	strong	.	PLOD3	79	.	NM_001084	exon18	c.C1977T	p.D659D	CTGCTCGTCTGGC	.	PASS	Atlas-SNP
P2RX3	5024	hgsc.bcm.edu	37	11	57137371	57137371	+	Silent	SNP	G	G	A	rs2276039	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	79	121	1	0.537415	0.00826446	G|0.664;A|0.336	0.336	strong	P2RX3,NS,adenoma,0,1	P2RX3	55	1	NM_002559	exon12	c.G1095A	p.T365T	GACTACGCTGAAA	.	scavenged	Atlas-SNP
ACP2	53	hgsc.bcm.edu	37	11	47270255	47270255	+	Missense_Mutation	SNP	C	C	T	rs2167079	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	78	138	0	0.52	0	C|0.559;T|0.441	0.441	strong	.	ACP2	36	.	NM_001610	exon1	c.G86A	p.R29Q	CGGGCCCGGGTGG	.	PASS	Atlas-SNP
PFN1	5216	hgsc.bcm.edu	37	17	4849284	4849284	+	Silent	SNP	G	G	A	rs13204	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	287	146	317	0	0.508711	0	G|0.949;C|0.000;A|0.051	0.051	strong	.	PFN1	6	.	NM_005022	exon3	c.C334T	p.L112L	TCAGCAGGACTAG	.	PASS	Atlas-SNP
ZNF107	51427	hgsc.bcm.edu	37	7	64168806	64168806	+	Silent	SNP	T	T	C	rs4718103	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	24	24	0	1	0	T|0.629;C|0.371	0.371	strong	.	ZNF107	107	.	NM_016220	exon7	c.T2124C	p.T708T	CCTTACTACACAT	.	PASS	Atlas-SNP
SARDH	1757	hgsc.bcm.edu	37	9	136573412	136573412	+	Silent	SNP	G	G	A	rs2073815	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	30	56	0	0.508475	0	G|0.539;A|0.461	0.461	strong	SARDH,NS,carcinoma,0,2	SARDH	112	2	NM_007101	exon11	c.C1467T	p.H489H	TACCTCGTGCAGC	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24394811	24394811	+	Missense_Mutation	SNP	A	A	G	rs12145360	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	55	178	0	0.381944	0	A|0.836;G|0.164	0.164	strong	.	MYOM3	131	.	NM_152372	exon26	c.T3197C	p.I1066T	TGGATGATCACTT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507817	195507817	+	Missense_Mutation	SNP	A	A	G	rs200993341	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	425	17	398	10	0.04	0.0251256	G|0.994;T|0.006	0.994	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.T10634C	p.V3545A	GTGGATACTGAGG	.	scavenged	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	37	16	48151202	48151202	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	59	84	0	0.479675	0	.	.	none	.	ABCC12	190	.	NM_033226	exon12	c.G1755A	p.L585L	GTTGCTCAGGTCC	.	PASS	Atlas-SNP
RIMBP3	85376	hgsc.bcm.edu	37	22	20457514	20457514	+	Missense_Mutation	SNP	T	T	G	rs200584390		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	313	132	301	1	0.421725	0.00332226	.	.	weak	RIMBP3,colon,carcinoma,0,1	RIMBP3	42	1	NM_015672	exon1	c.A3788C	p.E1263A	TCTCCTTCTGAGC	.	scavenged	Atlas-SNP
D2HGDH	728294	hgsc.bcm.edu	37	2	242674803	242674803	+	Missense_Mutation	SNP	G	G	A	rs77940364	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	23	22	0	1	0	G|0.785;A|0.215	0.215	strong	.	D2HGDH	39	.	NM_152783	exon2	c.G164A	p.R55Q	CCGTGCGGCGCTT	.	PASS	Atlas-SNP
HELQ	113510	hgsc.bcm.edu	37	4	84364751	84364751	+	Silent	SNP	A	A	G	rs7665103	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	29	60	0	0.644444	0	A|0.558;G|0.442	0.442	strong	.	HELQ	95	.	NM_133636	exon6	c.T1482C	p.I494I	CATACCAATAATT	.	PASS	Atlas-SNP
CD19	930	hgsc.bcm.edu	37	16	28944700	28944700	+	Silent	SNP	G	G	T	rs35979293	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	47	79	0	0.559524	0	G|0.736;T|0.264	0.264	strong	.	CD19	65	.	NM_001178098	exon4	c.G705T	p.P235P	TCGCCCGGCCAGA	.	PASS	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	37	3	167083758	167083758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	2	192	0	0.0105263	0	.	.	none	ZBBX_ENST00000455345,NS,carcinoma,0,2	ZBBX	299	2	NM_024687	exon6	c.C189A	p.S63R	ATACTCGCTTGAC	.	scavenged	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	37	14	24529260	24529260	+	Silent	SNP	C	C	T	rs58283036	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	83	0	0.473118	0	C|0.788;T|0.212	0.212	strong	.	LRRC16B	120	.	NM_138360	exon23	c.C1950T	p.D650D	CGAGGACGTCTGG	.	PASS	Atlas-SNP
KIAA1644	85352	hgsc.bcm.edu	37	22	44681612	44681612	+	Silent	SNP	A	A	G	rs135388	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	38	51	0	0.493506	0	A|0.509;G|0.491	0.491	strong	.	KIAA1644	39	.	NM_001099294	exon4	c.T295C	p.L99L	CCAACAAGGCGGT	.	PASS	Atlas-SNP
FNBP1	23048	hgsc.bcm.edu	37	9	132662786	132662786	+	Missense_Mutation	SNP	C	C	T	rs1023000	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	105	113	0	1	0	C|0.386;T|0.614	0.614	strong	FNBP1_ENST00000372416,NS,carcinoma,0,2	FNBP1	51	2	NM_015033	exon14	c.G1469A	p.S490N	TGCTCGCTGCGTG	.	PASS	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	37	12	9009820	9009820	+	Missense_Mutation	SNP	G	G	A	rs1558526	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	91	181	0	0.535294	0	G|0.843;A|0.157	0.157	strong	.	A2ML1	199	.	NM_144670	exon24	c.G2909A	p.C970Y	GTGGCTGTGGCGA	.	PASS	Atlas-SNP
EHBP1	23301	hgsc.bcm.edu	37	2	63169975	63169975	+	Silent	SNP	G	G	A	rs138897020	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	72	138	0	0.529412	0	G|0.978;A|0.022	0.022	strong	EHBP1,NS,carcinoma,-2,1	EHBP1	127	1	NM_015252	exon12	c.G1413A	p.S471S	TACATCGTGGAGA	.	PASS	Atlas-SNP
DBNDD1	79007	hgsc.bcm.edu	37	16	90076445	90076445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	71	152	0	0.455128	0	.	.	none	.	DBNDD1	9	.	NM_024043	exon1	c.C11T	p.T4I	TTCCAGGTTTCTC	.	PASS	Atlas-SNP
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483174	38483174	+	Missense_Mutation	SNP	A	A	T	rs78489217	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	58	76	0	0.734177	0	A|0.886;T|0.114	0.114	strong	.	BAIAP2L2	39	.	NM_025045	exon11	c.T1216A	p.S406T	TGGGGGACATGGA	.	PASS	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18775810	18775810	+	Missense_Mutation	SNP	C	C	A	rs934472	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	98	0	1	0	C|0.566;A|0.434	0.434	strong	.	ADAMTSL1	306	.	NM_001040272	exon18	c.C2467A	p.L823I	ACCGGCCTCTCAA	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126411594	126411594	+	Silent	SNP	G	G	A	rs62312781	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	50	84	0	0.588235	0	G|0.825;A|0.175	0.175	strong	.	FAT4	1752	.	NM_024582	exon17	c.G13617A	p.E4539E	CAAAGAGGAGAAG	.	PASS	Atlas-SNP
ICAM3	3385	hgsc.bcm.edu	37	19	10446568	10446568	+	Missense_Mutation	SNP	T	T	C	rs2304237	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	22	35	0	0.55	0	T|0.817;C|0.183	0.183	strong	.	ICAM3	29	.	NM_002162	exon3	c.A428G	p.D143G	GACCCATCCTCCA	.	PASS	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	37	5	109973902	109973902	+	Silent	SNP	T	T	G	rs1422495	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	76	171	0	0.444444	0	T|0.910;G|0.090	0.090	strong	.	TMEM232	57	.	NM_001039763	exon5	c.A498C	p.A166A	TACCTTTGCTAGC	.	PASS	Atlas-SNP
THUMPD2	80745	hgsc.bcm.edu	37	2	39997087	39997087	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	3	172	0	0.017341	0	.	.	none	THUMPD2,NS,carcinoma,0,1	THUMPD2	35	1	NM_025264	exon3	c.G435A	p.K145K	TAATTTCTTTGCA	.	scavenged	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888042	52888042	+	Silent	SNP	G	G	T	rs75507701	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	7	19	3	0.179487	0.157895	G|0.910;T|0.090	0.090	strong	ZNF880,caecum,carcinoma,0,1	ZNF880	45	1	NM_001145434	exon4	c.G1209T	p.T403T	GCACACGGGAGAG	.	scavenged	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100679902	100679902	+	Silent	SNP	A	A	G	rs55974941	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	61	67	0	0.983871	0	A|0.600;G|0.400	0.400	strong	MUC17,rectum,carcinoma,0,2	MUC17	804	2	NM_001040105	exon3	c.A5205G	p.E1735E	TTCTGAAGGTACC	.	PASS	Atlas-SNP
TBC1D26	353149	hgsc.bcm.edu	37	17	15640806	15640806	+	Missense_Mutation	SNP	A	A	C	rs3852810	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	58	78	0	0.202797	0	A|0.500;C|0.500	0.500	strong	TBC1D26,trunk,malignant_melanoma,0,1	TBC1D26	16	1	NM_178571	exon5	c.A167C	p.E56A	AGATGGAGCTGCC	.	scavenged	Atlas-SNP
FAM118A	55007	hgsc.bcm.edu	37	22	45728370	45728370	+	Missense_Mutation	SNP	G	G	A	rs6007594	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	105	228	0	0.495283	0	G|0.536;A|0.464	0.464	strong	FAM118A,NS,carcinoma,0,1	FAM118A	32	1	NM_017911	exon6	c.G716A	p.R239H	CCCTTCGTGATCA	.	PASS	Atlas-SNP
CATSPER4	378807	hgsc.bcm.edu	37	1	26517794	26517794	+	Missense_Mutation	SNP	A	A	G	rs11247866	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	74	141	0	0.471338	0	A|0.823;G|0.177	0.177	strong	.	CATSPER4	59	.	NM_198137	exon2	c.A230G	p.Q77R	ACATGCAGGAGTT	.	PASS	Atlas-SNP
ENC1	8507	hgsc.bcm.edu	37	5	73931246	73931246	+	Silent	SNP	T	T	C	rs442425	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	62	86	0	1	0	T|0.206;C|0.794	0.794	strong	.	ENC1	56	.	NM_003633	exon2	c.A1065G	p.S355S	ATCTTTTGAGACC	.	PASS	Atlas-SNP
WDR27	253769	hgsc.bcm.edu	37	6	170047902	170047902	+	Missense_Mutation	SNP	T	T	A	rs61740334	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	77	165	0	0.447674	0	T|0.912;A|0.088	0.088	strong	.	WDR27	129	.	NM_182552	exon16	c.A1624T	p.T542S	TGCAGGTGGGGGC	.	PASS	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	37	10	18266989	18266989	+	Missense_Mutation	SNP	G	G	A	rs2478568	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	45	97	0	0.45	0	G|0.353;A|0.647	0.647	strong	.	SLC39A12	181	.	NM_152725	exon5	c.G910A	p.V304I	GGTCCAGTTTCCT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509623	195509623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	268	2	294	0	0.00746269	0	.	.	none	MUC4_ENST00000463781,NS,carcinoma,+1,1	MUC4	1505	1	NM_018406	exon2	c.C8828T	p.T2943I	AGAGGGGTGGTGT	.	scavenged	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	37	19	10132318	10132318	+	Missense_Mutation	SNP	T	T	C	rs45503592	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	48	102	0	0.489796	0	T|0.990;C|0.010	0.010	strong	.	RDH8	51	.	NM_015725	exon6	c.T889C	p.Y297H	AGCCTGTATGTGC	.	PASS	Atlas-SNP
TULP3	7289	hgsc.bcm.edu	37	12	3046802	3046802	+	Silent	SNP	A	A	G	rs33973716	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	86	156	0	0.609929	0	A|0.796;G|0.204	0.204	strong	.	TULP3	45	.	NM_003324	exon9	c.A930G	p.T310T	GGAAACAAACGTA	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113166792	113166792	+	Missense_Mutation	SNP	A	A	T	rs3739451	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	125	256	1	0.548246	0.00390625	A|0.878;T|0.122	0.122	strong	.	SVEP1	326	.	NM_153366	exon39	c.T9481A	p.F3161I	AGGTGAATGTATC	.	PASS	Atlas-SNP
LEPREL1	55214	hgsc.bcm.edu	37	3	189712010	189712010	+	Silent	SNP	G	G	A	rs1719600	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	35	57	0	0.5	0	G|0.812;A|0.188	0.188	strong	.	LEPREL1	95	.	NM_018192	exon3	c.C696T	p.H232H	TTCGAAGTGCCTG	.	PASS	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	37	5	150666933	150666933	+	Silent	SNP	C	C	A	rs375396	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	107	185	0	0.537688	0	C|0.776;A|0.224	0.224	strong	.	SLC36A3	54	.	NM_001145017	exon7	c.G705T	p.L235L	GATTATCAGCATG	.	PASS	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	37	17	34072555	34072555	+	Missense_Mutation	SNP	G	G	A	rs3744374	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	70	65	0	0.985915	0	G|0.753;A|0.247	0.247	strong	GAS2L2,NS,carcinoma,0,1	GAS2L2	94	1	NM_139285	exon6	c.C1961T	p.A654V	TGGATGGCTTTGT	.	PASS	Atlas-SNP
HYOU1	10525	hgsc.bcm.edu	37	11	118925935	118925935	+	Silent	SNP	G	G	A	rs511134	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	63	126	0	0.520661	0	G|0.962;A|0.038	0.038	strong	.	HYOU1	88	.	NM_006389	exon5	c.C381T	p.F127F	TGGGTCGAAAGTC	.	PASS	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	37	18	8798185	8798185	+	Missense_Mutation	SNP	G	G	A	rs12386117	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	105	243	0	0.470852	0	G|0.897;A|0.103	0.103	strong	.	.	.	.	NM_015210	exon10	c.G2332A	p.G778S	GACCGAGGCTGTG	.	PASS	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	37	5	135392426	135392426	+	Silent	SNP	T	T	C	rs4669	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	125	260	0	0.553097	0	T|0.599;C|0.401	0.401	strong	.	TGFBI	76	.	NM_000358	exon12	c.T1620C	p.F540F	AGTCTTTGCTCCC	.	PASS	Atlas-SNP
METTL11B	149281	hgsc.bcm.edu	37	1	170135669	170135669	+	Silent	SNP	C	C	T	rs6427234	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	51	69	0	0.525773	0	C|0.725;T|0.275	0.275	strong	.	METTL11B	18	.	NM_001136107	exon3	c.C357T	p.C119C	AGACTGCGCCTTG	.	PASS	Atlas-SNP
KDR	3791	hgsc.bcm.edu	37	4	55972946	55972946	+	Missense_Mutation	SNP	A	A	G	rs34231037	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	100	210	0	0.446429	0	A|0.980;G|0.020	0.020	strong	KDR,middle_lobe,carcinoma,+2,1	KDR	307	1	NM_002253	exon11	c.T1444C	p.C482R	CTTCACAAGGGTA	.	PASS	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	37	11	7673015	7673015	+	Silent	SNP	G	G	A	rs5864	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	27	68	0	0.364865	0	G|0.325;A|0.675	0.675	strong	PPFIBP2,NS,carcinoma,+2,1	PPFIBP2	87	1	NM_003621	exon23	c.G2376A	p.E792E	ACAGGAGAAGCGA	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123725926	123725926	+	Missense_Mutation	SNP	T	T	G	rs17612	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	127	270	0	0.522634	0	T|0.954;G|0.046	0.046	strong	.	C5	124	.	NM_001735	exon34	c.A4311C	p.E1437D	TAAGTCTTCTTCA	.	PASS	Atlas-SNP
WDR18	57418	hgsc.bcm.edu	37	19	984533	984533	+	Silent	SNP	T	T	C	rs2301810	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	9	36	0	0.428571	0	T|0.552;C|0.448	0.448	strong	.	WDR18	20	.	NM_024100	exon1	c.T180C	p.N60N	CAAGAATTACATC	.	PASS	Atlas-SNP
ESF1	51575	hgsc.bcm.edu	37	20	13695607	13695607	+	Missense_Mutation	SNP	T	T	G	rs34414644	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	67	175	0	0.437909	0	T|0.915;G|0.085	0.085	strong	.	ESF1	77	.	NM_001276380	exon14	c.A2470C	p.I824L	GATCAATGGACTT	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47971575	47971575	+	Silent	SNP	A	A	G	rs885337	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	41	27	0	0.97619	0	A|0.509;G|0.491	0.491	strong	.	PKD1L1	328	.	NM_138295	exon5	c.T477C	p.C159C	AGTAGCACACAGC	.	PASS	Atlas-SNP
RGS9BP	388531	hgsc.bcm.edu	37	19	33167208	33167208	+	Silent	SNP	C	C	G	rs3826926	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	15	41	0	0.416667	0	C|0.953;G|0.047	0.047	strong	.	RGS9BP	9	.	NM_207391	exon1	c.C39G	p.L13L	CGGGCTCAACAAG	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76522785	76522785	+	Missense_Mutation	SNP	C	C	T	rs61744544	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	100	99	1	0.990099	0.010101	C|0.872;T|0.128	0.128	strong	DNAH17,NS,carcinoma,-1,1	DNAH17	347	1	NM_173628	exon24	c.G3659A	p.R1220H	GCCTCGCGCCTGA	.	scavenged	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228548197	228548197	+	Missense_Mutation	SNP	G	G	A	rs10158354	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	31	40	0	0.492063	0	G|0.847;A|0.153	0.153	strong	.	OBSCN	2142	.	NM_052843	exon81	c.G19604A	p.R6535H	AGCCCCGTGGGGC	.	PASS	Atlas-SNP
CLEC3B	7123	hgsc.bcm.edu	37	3	45077123	45077123	+	Missense_Mutation	SNP	G	G	A	rs13963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	58	82	0	0.504348	0	G|0.539;A|0.461	0.461	strong	.	CLEC3B	15	.	NM_003278	exon3	c.G316A	p.G106S	ACCCTGGGCACCC	.	PASS	Atlas-SNP
RBAK	57786	hgsc.bcm.edu	37	7	5104275	5104275	+	Silent	SNP	G	G	A	rs12674330	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	20	30	0	0.47619	0	G|0.868;A|0.132	0.132	strong	.	RBAK	82	.	NM_001204456	exon6	c.G1188A	p.T396T	TCACACGGGAGAG	.	PASS	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	37	20	40049450	40049450	+	Missense_Mutation	SNP	T	T	A	rs140143834	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	136	244	0	0.51711	0	T|0.995;A|0.005	0.005	strong	.	CHD6	312	.	NM_032221	exon31	c.A5825T	p.H1942L	TCCATGTGTTTGC	.	PASS	Atlas-SNP
DOC2B	8447	hgsc.bcm.edu	37	17	6157	6157	+	Silent	SNP	A	A	G	rs2294076	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	68	90	0	1	0	A|0.249;G|0.751	0.751	strong	.	DOC2B	6	.	NM_003585	exon6	c.T777C	p.T259T	GTCTTCAGTCTTG	.	PASS	Atlas-SNP
EBI3	10148	hgsc.bcm.edu	37	19	4236996	4236996	+	Missense_Mutation	SNP	G	G	A	rs4740	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	41	64	0	0.482353	0	A|0.399;C|0.003	0.399	strong	.	EBI3	15	.	NM_005755	exon5	c.G601A	p.V201I	TACTACGTCCAAG	.	PASS	Atlas-SNP
PIGQ	9091	hgsc.bcm.edu	37	16	632283	632283	+	Missense_Mutation	SNP	G	G	A	rs7187227	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	72	134	0	0.503497	0	G|0.853;A|0.147	0.147	strong	.	PIGQ	43	.	NM_004204	exon10	c.G1567A	p.G523S	GAGGCCGGCAGGC	.	PASS	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	37	19	3752601	3752601	+	Missense_Mutation	SNP	G	G	A	rs147130540	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	9	3	0	0.75	0	G|0.987;A|0.013	0.013	strong	.	APBA3	28	.	NM_004886	exon8	c.C1300T	p.R434C	CCGAGCGCTCAGC	.	PASS	Atlas-SNP
CFI	3426	hgsc.bcm.edu	37	4	110681505	110681505	+	Silent	SNP	C	C	T	rs2298749	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	60	143	0	0.397351	0	C|0.702;T|0.298	0.298	strong	.	CFI	59	.	NM_000204	exon6	c.G804A	p.S268S	AACACCCGATTTG	.	PASS	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	37	5	86564564	86564564	+	Missense_Mutation	SNP	C	C	T	rs111840875	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	61	87	0	0.539823	0	C|0.982;T|0.018	0.018	strong	.	RASA1	213	.	NM_002890	exon1	c.C296T	p.A99V	GTGCTGCTGCTGG	.	PASS	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	37	7	98506441	98506441	+	Silent	SNP	C	C	T	rs35310331	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	56	74	0	0.523364	0	C|0.831;T|0.169	0.169	strong	.	TRRAP	863	.	NM_001244580	exon14	c.C1206T	p.F402F	GCTCTTCGCCAAG	.	PASS	Atlas-SNP
ZDHHC23	254887	hgsc.bcm.edu	37	3	113673125	113673125	+	Missense_Mutation	SNP	A	A	G	rs11921691	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	155	166	0	0.99359	0	A|0.415;G|0.585	0.585	strong	ZDHHC23,NS,carcinoma,-1,1	ZDHHC23	38	1	NM_173570	exon3	c.A740G	p.K247R	CTTCCAAGATGCC	.	PASS	Atlas-SNP
MIA2	117153	hgsc.bcm.edu	37	14	39716201	39716201	+	Missense_Mutation	SNP	A	A	G	rs11845046	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	26	51	0	0.472727	0	A|0.770;G|0.230	0.230	strong	.	MIA2	82	.	NM_054024	exon4	c.A423G	p.I141M	AAATATATATCCT	.	PASS	Atlas-SNP
EGFL7	51162	hgsc.bcm.edu	37	9	139564668	139564668	+	Missense_Mutation	SNP	G	G	A	rs2297538	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	26	84	0	0.346667	0	G|0.800;A|0.200	0.200	strong	.	EGFL7	11	.	NM_016215	exon8	c.G457A	p.V153I	CGCTGCGTCAACA	.	PASS	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	37	5	1880891	1880891	+	Missense_Mutation	SNP	C	C	T	rs2232376	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	42	64	0	0.5	0	T|0.195;G|0.006	0.195	strong	IRX4,colon,carcinoma,0,1	IRX4	45	1	NM_016358	exon3	c.G355A	p.A119T	CGGCAGCGGCTGG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1088835	1088835	+	Missense_Mutation	SNP	C	C	T	rs41389046	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	35	54	0	0.538462	0	C|0.932;T|0.068	0.068	strong	MUC2_ENST00000441003,colon,carcinoma,0,2	MUC2	614	2	NM_002457	exon26	c.C3620T	p.T1207I	AGGAGACCTGCAA	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139712355	139712355	+	Silent	SNP	G	G	A	rs77613350	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	52	0	0.464286	0	G|0.967;A|0.033	0.033	strong	.	COL22A1	390	.	NM_152888	exon32	c.C2592T	p.P864P	ACTTACGGGCATC	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90500224	90500224	+	Silent	SNP	C	C	T	rs58932350	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	43	121	0	0.505882	0	C|0.902;T|0.098	0.098	strong	.	.	.	.	NM_178828	exon4	c.C822T	p.P274P	ATGCCCCGTCCCC	.	PASS	Atlas-SNP
BAAT	570	hgsc.bcm.edu	37	9	104130469	104130469	+	Missense_Mutation	SNP	C	C	G	rs41281027	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	46	116	1	0.380165	0.00862069	C|0.839;G|0.161	0.161	strong	BAAT,bladder,carcinoma,-1,1	BAAT	52	1	NM_001127610	exon3	c.G602C	p.R201P	GGTTTGCGGGGCA	.	scavenged	Atlas-SNP
DDR1	780	hgsc.bcm.edu	37	6	30857072	30857072	+	Silent	SNP	G	G	C	rs2229933	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	116	195	1	1	0.00512821	G|0.733;C|0.267	0.267	strong	.	DDR1	213	.	NM_001202523	exon4	c.G336C	p.L112L	ACGACTGCACCTG	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225534219	225534219	+	Missense_Mutation	SNP	T	T	C	rs7527925	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	101	230	0	0.490291	0	T|0.500;C|0.500	0.500	strong	.	DNAH14	300	.	NM_001373	exon69	c.T10880C	p.V3627A	GCACTGTAATCAT	.	PASS	Atlas-SNP
PSMC5	5705	hgsc.bcm.edu	37	17	61908556	61908556	+	Silent	SNP	C	C	T	rs13030	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	78	79	0	1	0	C|0.689;T|0.311	0.311	strong	.	PSMC5	41	.	NM_002805	exon8	c.C840T	p.L280L	CCAGCTCGACGGC	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76528591	76528591	+	Silent	SNP	C	C	T	rs11868065	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	124	94	0	0.976378	0	C|0.509;T|0.491	0.491	strong	.	DNAH17	347	.	NM_173628	exon20	c.G3087A	p.P1029P	GGTGGGCGGTGTC	.	PASS	Atlas-SNP
NEDD8-MDP1	100528064	hgsc.bcm.edu	37	14	24687414	24687414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	3	155	0	0.0177515	0	.	.	none	NEDD8,rectum,carcinoma,0,2	.	.	2	NM_001199823	exon3	c.G74A	p.R25Q	TTGATTCGCTCCA	.	scavenged	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	37	15	22969232	22969232	+	Missense_Mutation	SNP	G	G	A	rs7170637	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	55	73	0	0.518868	0	G|0.704;A|0.296	0.296	strong	CYFIP1_ENST00000435939,colon,carcinoma,0,2	CYFIP1	159	2	NM_014608	exon22	c.G2458A	p.G820S	CTGGACGGCTTCG	.	PASS	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145323667	145323667	+	Missense_Mutation	SNP	C	C	G	rs199626421		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	7	39	0	0.145833	0	.	.	weak	NBPF10,NS,carcinoma,0,6	NBPF10	221	6	NM_001039703	exon27	c.C3504G	p.D1168E	AAAGGACGAAGAA	.	scavenged	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	37	20	31676804	31676804	+	Missense_Mutation	SNP	A	A	C	rs2889732	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	47	116	0	0.505376	0	A|0.522;C|0.478	0.478	strong	.	.	.	.	NM_182519	exon6	c.A959C	p.N320T	TAGTGAACCGAGT	.	PASS	Atlas-SNP
KIAA1467	57613	hgsc.bcm.edu	37	12	13208552	13208552	+	Silent	SNP	C	C	T	rs4763924	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	40	52	0	0.5	0	C|0.738;T|0.262	0.262	strong	.	KIAA1467	78	.	NM_020853	exon2	c.C105T	p.D35D	CGAAGACGATCTG	.	PASS	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	37	17	73888427	73888427	+	Missense_Mutation	SNP	A	A	C	rs7222757	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	20	47	0	0.434783	0	A|0.572;C|0.428	0.428	strong	.	TRIM65	23	.	NM_001256124	exon3	c.T665G	p.V222G	AAATGGACCCGCA	.	PASS	Atlas-SNP
MAP9	79884	hgsc.bcm.edu	37	4	156289900	156289900	+	Silent	SNP	C	C	T	rs3733390	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	475	215	470	0	0.452632	0	C|0.687;T|0.313	0.313	strong	.	MAP9	79	.	NM_001039580	exon5	c.G546A	p.L182L	CTTTTTCAACATA	.	PASS	Atlas-SNP
PCSK4	54760	hgsc.bcm.edu	37	19	1487059	1487059	+	Silent	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	15	17	0	0.714286	0	.	.	none	.	PCSK4	44	.	NM_017573	exon8	c.C861A	p.R287R	CCCGCCGCGGCCC	.	PASS	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	37	1	11008497	11008497	+	Silent	SNP	G	G	C	rs1281017	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	89	127	0	0.497207	0	G|0.745;C|0.255	0.255	strong	.	C1orf127	134	.	NM_001170754	exon12	c.C1695G	p.G565G	TGACAAGCCTCTC	.	PASS	Atlas-SNP
CCDC38	120935	hgsc.bcm.edu	37	12	96266039	96266039	+	Missense_Mutation	SNP	C	C	T	rs75483222	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	6	145	0	0.0326087	0	C|0.997;T|0.003	0.003	strong	CCDC38,NS,carcinoma,-1,1	CCDC38	45	1	NM_182496	exon14	c.G1478A	p.R493Q	TTTTGCCGCCATT	.	scavenged	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	37	5	109110537	109110537	+	Silent	SNP	T	T	A	rs6894260	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	42	72	0	0.42	0	A|0.390;N|0.000	0.390	strong	MAN2A1,extremity,malignant_melanoma,+2,1	MAN2A1	136	1	NM_002372	exon8	c.T1245A	p.R415R	TTTTCGTACCAAA	.	PASS	Atlas-SNP
ZNF746	155061	hgsc.bcm.edu	37	7	149191460	149191460	+	Silent	SNP	G	G	A	rs61744226	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	270	141	227	1	0.522222	0.00440529	G|0.714;A|0.286	0.286	strong	.	ZNF746	68	.	NM_001163474	exon2	c.C159T	p.A53A	CTCCACGGCTGTC	.	PASS	Atlas-SNP
SMPD2	6610	hgsc.bcm.edu	37	6	109762332	109762332	+	Missense_Mutation	SNP	C	C	T	rs1048197	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	26	80	0	0.361111	0	C|0.925;T|0.075	0.075	strong	.	SMPD2	25	.	NM_003080	exon1	c.C8T	p.P3L	TGAAGCCCAACTT	.	PASS	Atlas-SNP
OR51I2	390064	hgsc.bcm.edu	37	11	5475505	5475505	+	Missense_Mutation	SNP	C	C	T	rs75620804	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	113	207	0	0.49345	0	C|0.983;T|0.017	0.017	strong	.	OR51I2	76	.	NM_001004754	exon1	c.C787T	p.R263C	GTGCACCGCTTTG	.	PASS	Atlas-SNP
NAB1	4664	hgsc.bcm.edu	37	2	191550283	191550283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	218	3	196	0	0.0137615	0	.	.	none	NAB1,colon,carcinoma,-1,1	NAB1	31	1	NM_005966	exon8	c.A1177T	p.R393W	GAGAGGAGGTTGT	.	scavenged	Atlas-SNP
UBC	7316	hgsc.bcm.edu	37	12	125397435	125397435	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	294	6	314	1	0.0204082	0.00318471	.	.	none	UBC,NS,carcinoma,0,1	UBC	79	1	NM_021009	exon2	c.C883T	p.L295L	GGTGCAGGGTAGA	.	scavenged	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8999453	8999453	+	Silent	SNP	C	C	T	rs11085765	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	255	181	189	0	0.709804	0	C|0.353;T|0.647	0.647	strong	.	MUC16	4315	.	NM_024690	exon56	c.G40722A	p.L13574L	GTGGGTCAGCTGG	.	PASS	Atlas-SNP
ATF7IP2	80063	hgsc.bcm.edu	37	16	10574813	10574813	+	Missense_Mutation	SNP	G	G	A	rs9931441	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	19	70	0	0.38	0	G|0.914;A|0.086	0.086	strong	.	ATF7IP2	40	.	NM_024997	exon11	c.G1627A	p.A543T	CAAAATGCAGTCC	.	PASS	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	37	1	46500251	46500251	+	Missense_Mutation	SNP	G	G	A	rs33931638	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	99	192	0	0.469194	0	G|0.951;A|0.049	0.049	strong	.	MAST2	136	.	NM_015112	exon29	c.G3910A	p.V1304M	TCCAGCGTGCCCA	.	PASS	Atlas-SNP
IL34	146433	hgsc.bcm.edu	37	16	70694000	70694000	+	Nonsense_Mutation	SNP	C	C	A	rs4985556	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	110	219	0	0.497738	0	C|0.927;A|0.073	0.073	strong	.	IL34	26	.	NM_152456	exon7	c.C639A	p.Y213X	GCTGTACCCTCCG	.	PASS	Atlas-SNP
ERICH1	157697	hgsc.bcm.edu	37	8	623593	623593	+	Silent	SNP	G	G	A	rs55783038	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	46	114	0	0.534884	0	G|0.717;A|0.283	0.283	strong	.	ERICH1	50	.	NM_207332	exon4	c.C759T	p.A253A	CTCACTGGCGTCC	.	PASS	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	37	12	63954304	63954304	+	Silent	SNP	T	T	C	rs1054891	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	69	146	0	0.436709	0	T|0.532;C|0.468	0.468	strong	DPY19L2,colon,carcinoma,0,1	DPY19L2	97	1	NM_173812	exon22	c.A2265G	p.L755L	AACCTTTAATACT	.	PASS	Atlas-SNP
PMS2	5395	hgsc.bcm.edu	37	7	6043386	6043386	+	Silent	SNP	G	G	A	rs12532895	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	7	8	0	0.388889	0	G|0.942;A|0.058	0.058	strong	.	PMS2	88	.	NM_000535	exon4	c.C288T	p.A96A	TAGGTCGGCAAAC	.	PASS	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	37	8	10390452	10390452	+	Missense_Mutation	SNP	C	C	T	rs4406360	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	43	78	0	0.511905	0	C|0.668;T|0.332	0.332	strong	.	PRSS55	67	.	NM_001197020	exon4	c.C635T	p.A212V	TGAAAGCGCCAAT	.	PASS	Atlas-SNP
SFI1	9814	hgsc.bcm.edu	37	22	31998612	31998612	+	Missense_Mutation	SNP	G	G	A	rs2006771	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	69	182	0	0.463087	0	G|0.614;A|0.386	0.386	strong	.	SFI1	78	.	NM_001007467	exon17	c.G1646A	p.R549Q	CAGAGCGACAGCT	.	PASS	Atlas-SNP
KCNK16	83795	hgsc.bcm.edu	37	6	39290200	39290200	+	Silent	SNP	C	C	T	rs3734619	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	99	76	0	0.99	0	C|0.591;T|0.409	0.409	strong	KCNK16_ENST00000425054,NS,carcinoma,-1,2	KCNK16	59	2	NM_001135106	exon1	c.G117A	p.A39A	AGCCTCCGCCTGC	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	9	75	7	0.0957447	0.0933333	.	.	weak	KRTAP4-11,NS,carcinoma,0,12	KRTAP4-11	94	12	NM_033059	exon1	c.A277G	p.M93V	AGCACATAGACTG	.	scavenged	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	37	12	18719972	18719972	+	Missense_Mutation	SNP	T	T	G	rs12099555	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	55	124	0	0.470085	0	T|0.912;G|0.088	0.088	strong	.	PIK3C2G	315	.	NM_004570	exon28	c.T3869G	p.V1290G	TAAATGTATCACA	.	PASS	Atlas-SNP
CCDC82	79780	hgsc.bcm.edu	37	11	96116444	96116444	+	Missense_Mutation	SNP	T	T	C	rs10831519	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	77	119	0	0.553957	0	T|0.781;C|0.219	0.219	strong	CCDC82,NS,carcinoma,+1,1	CCDC82	63	1	NM_024725	exon5	c.A980G	p.Q327R	GAATTCTGTTTTA	.	PASS	Atlas-SNP
VENTX	27287	hgsc.bcm.edu	37	10	135053710	135053710	+	Missense_Mutation	SNP	C	C	A	rs74164127	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	11	26	0	0.478261	0	C|0.917;A|0.083	0.083	strong	VENTX,striated_muscle,rhabdoid_tumour,-1,1	VENTX	24	1	NM_014468	exon3	c.C677A	p.A226E	CTCTGGCGTCCCA	.	PASS	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	37	1	156290656	156290656	+	Missense_Mutation	SNP	T	T	C	rs11548200	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	73	175	0	0.41954	0	T|0.961;C|0.039	0.039	strong	.	CCT3	61	.	NM_005998	exon7	c.A583G	p.I195V	TTTTTATGTCAAT	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133542014	133542014	+	Silent	SNP	T	T	C	rs12616282	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	184	223	1	0.994595	0.00448431	T|0.335;C|0.665	0.665	strong	.	NCKAP5	322	.	NM_207363	exon14	c.A2370G	p.A790A	CATGGGTGCCGAA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415200	105415200	+	Silent	SNP	G	G	C	rs10145566	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	111	176	1	0.991071	0.00568182	G|0.680;C|0.320	0.320	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C6588G	p.L2196L	GGTCTTGAGGTCC	.	PASS	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	37	12	114377877	114377877	+	Missense_Mutation	SNP	T	T	C	rs2290789	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	29	67	0	0.391892	0	T|0.830;C|0.170	0.170	strong	.	RBM19	117	.	NM_001146699	exon15	c.A1826G	p.H609R	CCAAAATGGCCGA	.	PASS	Atlas-SNP
ZNF440	126070	hgsc.bcm.edu	37	19	11943713	11943713	+	Silent	SNP	G	G	A	rs56167415	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	16	30	0	0.470588	0	G|0.863;A|0.137	0.137	strong	.	ZNF440	56	.	NM_152357	exon4	c.G1722A	p.R574R	TGTAAGGAATGTG	.	PASS	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	37	21	32638549	32638549	+	Missense_Mutation	SNP	C	C	A	rs2070417	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	54	109	0	0.54	0	C|0.874;A|0.119	0.119	strong	.	TIAM1	522	.	NM_003253	exon5	c.G740T	p.G247V	GGCCCCCCGTTTG	.	PASS	Atlas-SNP
APITD1-CORT	100526739	hgsc.bcm.edu	37	1	10511534	10511534	+	Missense_Mutation	SNP	G	G	T	rs201163116		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	82	175	0	0.429319	0	G|0.999;T|0.001	0.001	weak	.	.	.	.	NM_198544	exon5	c.G377T	p.G126V	TCATAGGAGAGGA	.	PASS	Atlas-SNP
ADRA1A	148	hgsc.bcm.edu	37	8	26628028	26628028	+	Missense_Mutation	SNP	A	A	G	rs1048101	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	90	88	0	0.978261	0	T|0.003;G|0.595	0.595	strong	.	ADRA1A	337	.	NM_033303	exon2	c.T1039C	p.C347R	TTCTGCAGAGACA	.	PASS	Atlas-SNP
GDF15	9518	hgsc.bcm.edu	37	19	18499238	18499238	+	Silent	SNP	G	G	T	rs1804826	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	12	20	0	0.571429	0	G|0.737;T|0.263	0.263	strong	.	GDF15	31	.	NM_004864	exon2	c.G420T	p.P140P	ACGACCGCTGCGG	.	PASS	Atlas-SNP
WWP2	11060	hgsc.bcm.edu	37	16	69970329	69970329	+	Silent	SNP	A	A	G	rs1983016	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	42	105	0	0.518519	0	A|0.193;G|0.807	0.807	strong	WWP2,NS,carcinoma,0,2	WWP2	88	2	NM_001270454	exon19	c.A2091G	p.T697T	GGTCACAGAGGAG	.	PASS	Atlas-SNP
IL2RB	3560	hgsc.bcm.edu	37	22	37531436	37531436	+	Silent	SNP	G	G	A	rs228953	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	74	63	0	0.973684	0	G|0.585;A|0.415	0.415	strong	.	IL2RB	44	.	NM_000878	exon8	c.C750T	p.G250G	GCTGAGGCCCACG	.	PASS	Atlas-SNP
COL9A3	1299	hgsc.bcm.edu	37	20	61460124	61460124	+	Silent	SNP	G	G	A	rs2249903	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	27	63	1	0.54	0.015873	G|0.833;A|0.167	0.167	strong	COL9A3,right_lower_lobe,carcinoma,+1,1	COL9A3	70	1	NM_001853	exon18	c.G909A	p.P303P	CATGCCGGGCAAG	.	scavenged	Atlas-SNP
C9orf96	169436	hgsc.bcm.edu	37	9	136268038	136268038	+	Silent	SNP	C	C	T	rs3124748	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	108	157	0	0.507042	0	C|0.588;T|0.412	0.412	strong	.	C9orf96	77	.	NM_153710	exon14	c.C1371T	p.N457N	GCAGAACGCTGGG	.	PASS	Atlas-SNP
OR2T8	343172	hgsc.bcm.edu	37	1	248084631	248084631	+	Silent	SNP	A	A	C	rs77166971		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	98	102	11	0.852174	0.107843	C|1.000;|0.000	1.000	weak	OR2T8,colon,carcinoma,+2,1	OR2T8	67	1	NM_001005522	exon1	c.A312C	p.T104T	CCCCACACTGGGT	.	scavenged	Atlas-SNP
CCDC94	55702	hgsc.bcm.edu	37	19	4251069	4251069	+	Silent	SNP	T	T	C	rs1045750	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	76	140	1	0.503311	0.00714286	T|0.563;C|0.437	0.437	strong	CCDC94,NS,carcinoma,0,1	CCDC94	28	1	NM_018074	exon3	c.T171C	p.N57N	ATTCAATGCTCGG	.	scavenged	Atlas-SNP
SP2	6668	hgsc.bcm.edu	37	17	46002744	46002744	+	Silent	SNP	G	G	T	rs1130932	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	39	62	0	0.493671	0	G|0.537;T|0.463	0.463	strong	SP2,colon,carcinoma,0,2	SP2	38	2	NM_003110	exon6	c.G1578T	p.V526V	GCACGTGTGCCAC	.	PASS	Atlas-SNP
UBE2F	140739	hgsc.bcm.edu	37	2	238903399	238903399	+	Silent	SNP	G	G	A	rs12615308	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	58	104	0	0.495726	0	G|0.885;A|0.115	0.115	strong	.	UBE2F	11	.	NM_080678	exon4	c.G162A	p.V54V	TAAAGTGCATTTT	.	PASS	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	37	14	20215989	20215989	+	Missense_Mutation	SNP	A	A	G	rs17210864	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	70	141	0	0.388889	0	A|0.904;G|0.096	0.096	strong	.	OR4Q3	117	.	NM_172194	exon1	c.A403G	p.T135A	TACCTTACAGTCA	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10355371	10355371	+	Missense_Mutation	SNP	C	C	T	rs11651295	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	75	144	0	0.446429	0	C|0.616;T|0.384	0.384	strong	.	MYH4	349	.	NM_017533	exon27	c.G3625A	p.E1209K	TCTGCTCCCCAAG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1104123	1104123	+	Silent	SNP	C	C	T	rs12270802	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	69	107	1	0.621622	0.00934579	C|0.894;T|0.106	0.106	strong	MUC2_ENST00000441003,NS,lymphoid_neoplasm,0,1	MUC2	614	1	NM_002457	exon50	c.C8302T	p.L2768L	GTGGTCCTGAGCT	.	scavenged	Atlas-SNP
ZNF222	7673	hgsc.bcm.edu	37	19	44536397	44536397	+	Silent	SNP	T	T	C	rs151037918	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	62	143	0	0.5	0	T|0.996;C|0.004	0.004	strong	.	ZNF222	90	.	NM_001129996	exon4	c.T690C	p.T230T	GCAAACTCATCAA	.	PASS	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	37	14	68029313	68029313	+	Missense_Mutation	SNP	G	G	A	rs2236235	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	38	67	0	0.457831	0	G|0.809;N|0.000	.	strong	.	PLEKHH1	118	.	NM_020715	exon7	c.G965A	p.R322Q	CCCCGCGGGACAG	.	PASS	Atlas-SNP
TWF2	11344	hgsc.bcm.edu	37	3	52264907	52264907	+	Silent	SNP	T	T	C	rs352143	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	62	118	0	0.516667	0	T|0.768;G|0.002	.	strong	.	TWF2	33	.	NM_007284	exon6	c.A588G	p.K196K	GACCATTTTCTGC	.	PASS	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	37	2	130898813	130898813	+	Missense_Mutation	SNP	G	G	A	rs2599962	bycluster;byfrequency;bysubmitter;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	24	208	1	0.135593	0.00480769	G|0.700;A|0.300	0.300	strong	CCDC74B,NS,carcinoma,+2,2	CCDC74B	27	2	NM_207310	exon4	c.C601T	p.P201S	TCTGGGGGACGTC	.	scavenged	Atlas-SNP
D2HGDH	728294	hgsc.bcm.edu	37	2	242690745	242690745	+	Missense_Mutation	SNP	C	C	T	rs1105273	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	63	116	0	0.492188	0	C|0.817;T|0.183	0.183	strong	D2HGDH,NS,carcinoma,-1,1	D2HGDH	39	1	NM_152783	exon8	c.C1082T	p.A361V	AGCACGCGCTGGG	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	37	7	20691047	20691047	+	Missense_Mutation	SNP	T	T	C	rs34603556	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	183	156	0	0.994565	0	T|0.866;C|0.134	0.134	strong	.	ABCB5	357	.	NM_001163941	exon13	c.T1337C	p.M446T	AGATCATGGTGGA	.	PASS	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	37	17	20013802	20013802	+	Silent	SNP	G	G	A	rs3764436	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	247	112	239	0	0.453441	0	G|0.892;A|0.108	0.108	strong	.	SPECC1	100	.	NM_001033553	exon3	c.G210A	p.V70V	GGGGGTGGTTCGC	.	PASS	Atlas-SNP
HOXD12	3238	hgsc.bcm.edu	37	2	176965086	176965086	+	Missense_Mutation	SNP	G	G	A	rs35817516	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	82	219	0	0.43617	0	G|0.928;A|0.072	0.072	strong	.	HOXD12	25	.	NM_021193	exon1	c.G557A	p.R186Q	GCCTGCGACCTTC	.	PASS	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	37	14	55618524	55618524	+	Missense_Mutation	SNP	C	C	G	rs35954941	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	88	221	0	0.44898	0	C|0.986;G|0.014	0.014	strong	.	DLGAP5	84	.	NM_014750	exon17	c.G2257C	p.E753Q	TCAGTTCCATTCC	.	PASS	Atlas-SNP
FAM86B2	653333	hgsc.bcm.edu	37	8	12285250	12285250	+	Missense_Mutation	SNP	G	G	A	rs199873615	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	10	13	0	0.526316	0	G|0.834;A|0.166	0.166	strong	FAM86B2_ENST00000393715,brain,glioma,0,3	FAM86B2	19	3	NM_001137610	exon7	c.C808T	p.R270W	GCTCCCGGCAGGC	.	scavenged	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	37	1	53712727	53712727	+	Missense_Mutation	SNP	C	C	T	rs5174	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	30	49	0	0.588235	0	C|0.764;T|0.236	0.236	strong	.	LRP8	58	.	NM_004631	exon19	c.G2855A	p.R952Q	GCCACTCGCTGGG	.	PASS	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	37	22	24564477	24564477	+	Silent	SNP	C	C	T	rs17854875	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	75	123	0	0.6	0	C|0.918;T|0.082	0.082	strong	.	CABIN1	153	.	NM_001199281	exon33	c.C5745T	p.A1915A	GGCTGCCGCCCAG	.	PASS	Atlas-SNP
ESYT3	83850	hgsc.bcm.edu	37	3	138191232	138191232	+	Missense_Mutation	SNP	G	G	A	rs10935282	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	21	55	0	0.488372	0	G|0.622;A|0.378	0.378	strong	.	ESYT3	64	.	NM_031913	exon18	c.G1768A	p.G590R	GAGCTGGGGAGCC	.	PASS	Atlas-SNP
ZNF30	90075	hgsc.bcm.edu	37	19	35434448	35434448	+	Missense_Mutation	SNP	A	A	G	rs62122088	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	58	120	0	0.456693	0	A|0.892;G|0.108	0.108	strong	.	ZNF30	44	.	NM_001099438	exon5	c.A581G	p.K194R	TTGTTAAGCATGG	.	PASS	Atlas-SNP
CEACAM7	1087	hgsc.bcm.edu	37	19	42190859	42190859	+	Missense_Mutation	SNP	A	A	T	rs8102488	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	485	235	409	0	0.484536	0	A|0.427;N|0.000	.	strong	.	CEACAM7	33	.	NM_006890	exon2	c.T358A	p.F120I	TATAGAATCCTGC	.	PASS	Atlas-SNP
GATA2	2624	hgsc.bcm.edu	37	3	128204951	128204951	+	Missense_Mutation	SNP	C	C	T	rs2335052	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	55	111	0	0.419847	0	C|0.800;T|0.200	0.200	strong	GATA2,colon,carcinoma,0,2	GATA2	122	2	NM_001145662	exon3	c.G490A	p.A164T	AGTGGGCTGCTGT	.	PASS	Atlas-SNP
KIAA1462	57608	hgsc.bcm.edu	37	10	30317073	30317073	+	Silent	SNP	G	G	A	rs9337951	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	87	198	0	0.412322	0	G|0.815;A|0.185	0.185	strong	.	KIAA1462	162	.	NM_020848	exon3	c.C2004T	p.H668H	TGTAAGGTGGATG	.	PASS	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	37	16	24582299	24582299	+	Silent	SNP	C	C	G	rs7196736	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	80	152	0	0.462428	0	C|0.848;G|0.152	0.152	strong	RBBP6,NS,adenocarcinoma,+2,1	RBBP6	158	1	NM_006910	exon18	c.C3912G	p.T1304T	CAATACCGCGCCA	.	PASS	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	37	7	126544178	126544178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	3	144	0	0.0238095	0	.	.	none	GRM8_ENST00000405249,NS,malignant_melanoma,+1,4	GRM8	377	4	NM_000845	exon4	c.G866A	p.R289K	AATATCCTCCTAC	.	scavenged	Atlas-SNP
SNAI3	333929	hgsc.bcm.edu	37	16	88747799	88747799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	3	99	0	0.0267857	0	.	.	none	SNAI3,NS,malignant_melanoma,0,1	SNAI3	23	1	NM_178310	exon2	c.G400A	p.G134R	GAGCCCCGTGCCG	.	scavenged	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36869741	36869741	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	89	162	1	0.481081	0.00617284	.	.	none	KIAA1755,NS,malignant_melanoma,-2,2	KIAA1755	145	2	NM_001029864	exon3	c.C792T	p.D264D	CACCTCGTCCATC	.	scavenged	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	37	8	17541957	17541957	+	Silent	SNP	C	C	T	rs74754090	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	38	102	0	0.422222	0	C|0.967;T|0.033	0.033	strong	.	MTUS1	144	.	NM_001001924	exon7	c.G2718A	p.T906T	ATATTGCGTCAAT	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910698	29910698	+	Missense_Mutation	SNP	G	G	A	rs1059449	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	130	224	0	0.53719	0	G|0.915;A|0.085	0.085	strong	.	HLA-A	89	.	NM_001242758	exon2	c.G238A	p.G80R	CAGGAGGGGCCGG	.	PASS	Atlas-SNP
SNRNP48	154007	hgsc.bcm.edu	37	6	7590624	7590624	+	Missense_Mutation	SNP	C	C	T	rs2757594	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	48	133	0	0.432432	0	C|0.778;T|0.222	0.222	strong	.	SNRNP48	32	.	NM_152551	exon1	c.C134T	p.P45L	TGGATCCCGGGGA	.	PASS	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	37	15	56387142	56387142	+	Silent	SNP	G	G	A	rs34361729	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	47	86	0	0.451923	0	G|0.879;A|0.121	0.121	strong	RFX7_ENST00000423270,NS,carcinoma,-1,2	RFX7	170	2	NM_022841	exon9	c.C2784T	p.H928H	GGAAGTGTGAGAT	.	PASS	Atlas-SNP
PCDHGA7	56108	hgsc.bcm.edu	37	5	140763339	140763339	+	Missense_Mutation	SNP	G	G	A	rs187406135	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	41	104	0	0.398058	0	G|1.000;A|0.000	0.000	strong	.	PCDHGA7	130	.	NM_032087	exon1	c.G873A	p.M291I	AAAGATGTTTCAT	.	PASS	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	37	13	76395620	76395620	+	Missense_Mutation	SNP	C	C	T	rs9593132	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	98	196	0	0.482759	0	C|0.935;T|0.065	0.065	strong	.	LMO7	334	.	NM_015842	exon11	c.C1816T	p.R606C	TCAACTCGTGTTT	.	PASS	Atlas-SNP
DHX33	56919	hgsc.bcm.edu	37	17	5347788	5347788	+	Missense_Mutation	SNP	G	G	A	rs75426953	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	65	97	0	0.52	0	A|0.014;C|0.000;G|0.986	0.014	strong	DHX33,NS,carcinoma,0,1	DHX33	41	1	NM_020162	exon12	c.C1861T	p.R621C	AGCGGCGGACACT	.	PASS	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	37	18	45555829	45555829	+	Silent	SNP	T	T	C	rs7231151	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	12	28	0	0.6	0	T|0.652;C|0.348	0.348	strong	.	ZBTB7C	73	.	NM_001039360	exon3	c.A1662G	p.T554T	CATCTGTGTCTCC	.	PASS	Atlas-SNP
DAOA	267012	hgsc.bcm.edu	37	13	106142235	106142235	+	Silent	SNP	C	C	T	rs778294	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	49	83	0	0.544444	0	C|0.763;T|0.237	0.237	strong	.	DAOA	26	.	NM_001161812	exon4	c.C183T	p.T61T	TGAGACCGGATCT	.	PASS	Atlas-SNP
OR2D3	120775	hgsc.bcm.edu	37	11	6942695	6942695	+	Missense_Mutation	SNP	C	C	T	rs12806437	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	270	144	281	0	0.533333	0	C|0.859;T|0.141	0.141	strong	OR2D3,NS,carcinoma,0,1	OR2D3	51	1	NM_001004684	exon1	c.C463T	p.R155W	ACACAACGGGTGT	.	PASS	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	37	2	9514917	9514917	+	Silent	SNP	C	C	T	rs33930824	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	69	121	0	0.472603	0	C|0.825;T|0.175	0.175	strong	.	ASAP2	91	.	NM_001135191	exon17	c.C1590T	p.Y530Y	CAAGTACATCGAG	.	PASS	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57971201	57971201	+	Silent	SNP	G	G	A	rs11229280	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	251	104	229	0	0.414343	0	G|0.585;A|0.415	0.415	strong	OR1S2,NS,carcinoma,-2,3	OR1S2	119	3	NM_001004459	exon1	c.C453T	p.A151A	GAACCTGGCCCGC	.	PASS	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	37	20	4228735	4228735	+	Silent	SNP	C	C	T	rs35105284	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	12	15	0	0.631579	0	C|0.787;T|0.213	0.213	strong	.	ADRA1D	36	.	NM_000678	exon1	c.G870A	p.A290A	GACGCCCGCCTCG	.	PASS	Atlas-SNP
PSKH2	85481	hgsc.bcm.edu	37	8	87060927	87060927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	61	131	0	0.480315	0	.	.	none	PSKH2,caecum,carcinoma,+1,2	PSKH2	79	2	NM_033126	exon3	c.C922T	p.R308C	ACATGCGATGACC	.	PASS	Atlas-SNP
USP15	9958	hgsc.bcm.edu	37	12	62696599	62696599	+	Silent	SNP	C	C	T	rs11174420	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	39	89	0	0.448276	0	C|0.662;T|0.338	0.338	strong	.	USP15	105	.	NM_001252078	exon3	c.C246T	p.H82H	GGAACACCTTATT	.	PASS	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	37	7	2644519	2644519	+	Missense_Mutation	SNP	C	C	T	rs2293404	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	31	70	0	0.418919	0	C|0.622;T|0.378	0.378	strong	IQCE,NS,carcinoma,0,1	IQCE	66	1	NM_152558	exon19	c.C1637T	p.A546V	AGGCGGCTGTGGT	.	PASS	Atlas-SNP
PWP1	11137	hgsc.bcm.edu	37	12	108096769	108096769	+	Missense_Mutation	SNP	G	G	C	rs11547907	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	81	0	1	0	G|0.964;C|0.036	0.036	strong	.	PWP1	43	.	NM_007062	exon9	c.G864C	p.L288F	GTCCTTGGGGAAA	.	PASS	Atlas-SNP
CTAGE5	4253	hgsc.bcm.edu	37	14	39818076	39818076	+	Missense_Mutation	SNP	A	A	G	rs61742363	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	98	197	0	0.579882	0	A|0.988;G|0.012	0.012	strong	.	CTAGE5	75	.	NM_001247989	exon23	c.A2158G	p.R720G	TTGAGAAGAGGAC	.	PASS	Atlas-SNP
CNRIP1	25927	hgsc.bcm.edu	37	2	68546374	68546374	+	Silent	SNP	T	T	C	rs4671898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	89	69	0	1	0	C|0.424;N|0.000	0.424	strong	CNRIP1_ENST00000409559,colon,carcinoma,0,6	CNRIP1	45	6	NM_001111101	exon1	c.A159G	p.K53K	GCTGGGTTTAATC	.	PASS	Atlas-SNP
TTYH2	94015	hgsc.bcm.edu	37	17	72240168	72240168	+	Missense_Mutation	SNP	G	G	A	rs35682745	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	22	57	0	0.511628	0	G|0.877;A|0.123	0.123	strong	TTYH2,colon,carcinoma,-1,1	TTYH2	63	1	NM_032646	exon6	c.G784A	p.A262T	CTGGCCGCTGATG	.	PASS	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6904137	6904137	+	Missense_Mutation	SNP	C	C	T	rs370094	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	82	132	0	0.554054	0	C|0.602;T|0.398	0.398	strong	.	EMR1	153	.	NM_001256253	exon8	c.C893T	p.A298V	GCATTGCAGGCTT	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3351195	3351195	+	Silent	SNP	C	C	A	rs56109797	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	52	74	0	0.536082	0	C|0.922;A|0.078	0.078	strong	.	CSMD1	1469	.	NM_033225	exon11	c.G1398T	p.L466L	AACCGTCAGGGTG	.	PASS	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	37	6	29080344	29080344	+	Missense_Mutation	SNP	G	G	A	rs3749977	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	370	175	351	0	0.472973	0	G|0.651;A|0.349	0.349	strong	.	OR2J3	53	.	NM_001005216	exon1	c.G677A	p.R226Q	TCGTCCGAGCTAT	.	PASS	Atlas-SNP
OR2D3	120775	hgsc.bcm.edu	37	11	6942726	6942726	+	Missense_Mutation	SNP	G	G	C	rs10839659	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	284	119	312	0	0.419014	0	G|0.707;C|0.292	0.292	strong	.	OR2D3	51	.	NM_001004684	exon1	c.G494C	p.W165S	GGTCCTGGGCCAG	.	PASS	Atlas-SNP
NMRAL1	57407	hgsc.bcm.edu	37	16	4519439	4519439	+	Missense_Mutation	SNP	G	G	A	rs11557236	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	51	87	0	0.53125	0	G|0.939;A|0.061	0.061	strong	.	NMRAL1	31	.	NM_020677	exon3	c.C68T	p.T23I	AGGAGTGTGCGGG	.	PASS	Atlas-SNP
CXorf64	100130613	hgsc.bcm.edu	37	X	125955428	125955428	+	Silent	SNP	G	G	A	rs2269777	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	51	42	0	1	0	G|0.667;0|0.006	.	strong	.	.	.	.	NM_001122716	exon2	c.G807A	p.P269P	TCCTCCGATATTT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276660	152276660	+	Missense_Mutation	SNP	G	G	C	rs7540123	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	297	37	377	0	0.124579	0	G|0.995;C|0.005	0.005	strong	FLG,NS,carcinoma,+2,1	FLG	900	1	NM_002016	exon3	c.C10702G	p.Q3568E	GCTCCTGAGCAGA	.	scavenged	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	37	15	100252805	100252805	+	Silent	SNP	G	G	T	rs325400	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	58	46	0	0.983051	0	G|0.641;T|0.359	0.359	strong	.	MEF2A	138	.	NM_005587	exon11	c.G1329T	p.G443G	AATGGGGCGCTCC	.	PASS	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	37	19	58578578	58578578	+	Silent	SNP	C	C	T	rs2229375	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	37	52	0	0.569231	0	C|0.659;T|0.341	0.341	strong	.	ZNF135	159	.	NM_007134	exon4	c.C798T	p.Y266Y	ACCTTACGAATGT	.	PASS	Atlas-SNP
RALGDS	5900	hgsc.bcm.edu	37	9	135983504	135983504	+	Silent	SNP	T	T	C	rs2285375	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	39	112	0	0.367925	0	T|0.669;C|0.331	0.331	strong	.	RALGDS	75	.	NM_006266	exon6	c.A1068G	p.A356A	AACTGGTGCTGGA	.	PASS	Atlas-SNP
GALK2	2585	hgsc.bcm.edu	37	15	49620200	49620200	+	Silent	SNP	C	C	T	rs1055254	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	38	71	0	0.368932	0	C|0.783;T|0.217	0.217	strong	.	GALK2	78	.	NM_002044	exon10	c.C1221T	p.C407C	AGGCTGCACAGTA	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144946252	144946252	+	Silent	SNP	C	C	T	rs11136330	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	22	52	1	0.431373	0.0192308	C|0.474;T|0.526	0.526	strong	EPPK1,NS,carcinoma,0,1	EPPK1	199	1	NM_031308	exon1	c.G1170A	p.L390L	CAGTGCCAGTGGC	.	scavenged	Atlas-SNP
CD300E	342510	hgsc.bcm.edu	37	17	72610089	72610089	+	Missense_Mutation	SNP	C	C	T	rs1878061	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	113	83	0	1	0	C|0.728;N|0.000	.	strong	CD300E,NS,carcinoma,0,1	CD300E	70	1	NM_181449	exon3	c.G472A	p.G158R	CCTCCCCGGTGCT	.	PASS	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	37	19	38827960	38827960	+	Missense_Mutation	SNP	T	T	C	rs2302182	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	32	62	0	0.385542	0	T|0.855;C|0.145	0.145	strong	.	CATSPERG	121	.	NM_021185	exon2	c.T86C	p.L29P	CAGTGCTCCTGGC	.	PASS	Atlas-SNP
HS3ST6	64711	hgsc.bcm.edu	37	16	1962046	1962046	+	Missense_Mutation	SNP	C	C	T	rs1742399	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	14	55	0	0.424242	0	C|0.646;T|0.354	0.354	strong	.	HS3ST6	26	.	NM_001009606	exon2	c.G481A	p.A161T	TCTGGGCGTAGTC	.	PASS	Atlas-SNP
TNK1	8711	hgsc.bcm.edu	37	17	7290695	7290695	+	Splice_Site	SNP	A	A	G	rs7220814	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	28	43	0	0.518519	0	A|0.902;G|0.098	0.098	strong	.	TNK1	31	.	NM_001251902	exon10	c.1413-2A>G	.	TCCGACAGAGACA	.	PASS	Atlas-SNP
ACSS1	84532	hgsc.bcm.edu	37	20	25000734	25000734	+	Silent	SNP	G	G	A	rs6115003	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	74	164	0	0.451219	0	G|0.872;A|0.128	0.128	strong	.	ACSS1	46	.	NM_001252677	exon7	c.C1158T	p.G386G	TGGGGCGCCATAG	.	PASS	Atlas-SNP
UGDH	7358	hgsc.bcm.edu	37	4	39510264	39510264	+	Silent	SNP	A	A	G	rs1129052	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	23	61	0	0.469388	0	A|0.746;G|0.254	0.254	strong	.	UGDH	52	.	NM_003359	exon7	c.T828C	p.C276C	TTGGAAACAGCTC	.	PASS	Atlas-SNP
TYW1	55253	hgsc.bcm.edu	37	7	66648157	66648157	+	Silent	SNP	C	C	T	rs4145350	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	48	95	0	0.489796	0	C|0.778;T|0.222	0.222	strong	.	TYW1	71	.	NM_018264	exon14	c.C1743T	p.N581N	ATGGAACGTGGAC	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90500193	90500193	+	Missense_Mutation	SNP	C	C	G	rs59256416	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	40	112	0	0.470588	0	C|0.881;G|0.119	0.119	strong	.	.	.	.	NM_178828	exon4	c.C791G	p.A264G	GCCTGGCTGGACT	.	PASS	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	37	1	91782031	91782031	+	Missense_Mutation	SNP	T	T	C	rs11584478	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	60	113	0	0.526316	0	T|0.824;C|0.176	0.176	strong	.	HFM1	188	.	NM_001017975	exon26	c.A2815G	p.I939V	ATGTTATACCTGT	.	PASS	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	37	11	66458980	66458980	+	Silent	SNP	G	G	A	rs623022	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	26	36	0	0.553191	0	G|0.952;A|0.048	0.048	strong	.	SPTBN2	188	.	NM_006946	exon26	c.C5340T	p.N1780N	GGCCTCGTTGAGA	.	PASS	Atlas-SNP
TMEM63A	9725	hgsc.bcm.edu	37	1	226041438	226041438	+	Silent	SNP	C	C	T	rs2292556	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	59	145	0	0.487603	0	C|0.960;T|0.040	0.040	strong	TMEM63A,NS,carcinoma,0,1	TMEM63A	75	1	NM_014698	exon19	c.G1689A	p.S563S	GAAGGCCGAGGCG	.	PASS	Atlas-SNP
ZNF71	58491	hgsc.bcm.edu	37	19	57133921	57133921	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	2	125	0	0.0140845	0	.	.	none	ZNF71,NS,carcinoma,0,1	ZNF71	69	1	NM_021216	exon3	c.C1266T	p.S422S	CCAGAGCGCCTAC	.	scavenged	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	37	15	91452595	91452595	+	Missense_Mutation	SNP	A	A	G	rs2106673	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	65	99	0	0.528455	0	A|0.596;G|0.404	0.404	strong	.	MAN2A2	99	.	NM_006122	exon8	c.A1235G	p.Q412R	AGTCCCAGCTGTT	.	PASS	Atlas-SNP
TMEM99	147184	hgsc.bcm.edu	37	17	38991100	38991100	+	Missense_Mutation	SNP	A	A	G	rs199620244	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	76	140	0	0.447059	0	.	.	weak	.	TMEM99	21	.	NM_001195386	exon3	c.A332G	p.N111S	TCAACAACTGGAC	.	PASS	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	37	16	77353973	77353973	+	Missense_Mutation	SNP	G	G	T	rs9930984	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	51	50	0	1	0	G|0.434;T|0.566	0.566	strong	.	ADAMTS18	270	.	NM_199355	exon16	c.C2305A	p.L769I	GAATGAGGACCAC	.	PASS	Atlas-SNP
OR13G1	441933	hgsc.bcm.edu	37	1	247835950	247835950	+	Missense_Mutation	SNP	T	T	C	rs1151640	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	48	105	0	0.390244	0	T|0.630;C|0.370	0.370	strong	OR13G1,colon,carcinoma,0,1	OR13G1	78	1	NM_001005487	exon1	c.A394G	p.I132V	TCATAATAGTACT	.	PASS	Atlas-SNP
GPC1	2817	hgsc.bcm.edu	37	2	241404499	241404499	+	Silent	SNP	C	C	T	rs2228327	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	133	128	0	1	0	C|0.727;T|0.273	0.273	strong	GPC1,NS,carcinoma,0,1	GPC1	32	1	NM_002081	exon7	c.C1140T	p.S380S	GGTCTCCGAAGCC	.	PASS	Atlas-SNP
DCTN4	51164	hgsc.bcm.edu	37	5	150097883	150097883	+	Missense_Mutation	SNP	G	G	C	rs11954652	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	49	104	0	0.480392	0	G|0.780;C|0.220	0.220	strong	.	DCTN4	35	.	NM_001135643	exon12	c.C1047G	p.F349L	ACACTCGAAGAGA	.	PASS	Atlas-SNP
SMCO4	0	hgsc.bcm.edu	37	11	93212254	93212254	+	Silent	SNP	C	C	T	rs2658797	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	47	100	0	0.460784	0	C|0.421;T|0.579	0.579	strong	.	.	.	.	NM_020179	exon3	c.G102A	p.V34V	GGGCAGCACCACT	.	PASS	Atlas-SNP
WDR24	84219	hgsc.bcm.edu	37	16	737269	737269	+	Silent	SNP	C	C	T	rs17850290	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	29	38	0	0.5	0	C|0.902;T|0.098	0.098	strong	.	WDR24	111	.	NM_032259	exon3	c.G807A	p.T269T	GGAGCACGTGGCC	.	PASS	Atlas-SNP
TM4SF4	7104	hgsc.bcm.edu	37	3	149193684	149193684	+	Silent	SNP	T	T	C	rs1802837	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	118	207	0	0.485597	0	C|0.263;N|0.000	0.263	strong	.	TM4SF4	27	.	NM_004617	exon2	c.T249C	p.C83C	GGGCTGTGGGAAG	.	PASS	Atlas-SNP
LATS1	9113	hgsc.bcm.edu	37	6	150005250	150005250	+	Silent	SNP	A	A	G	rs56246065	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	93	168	0	0.510989	0	A|0.986;G|0.014	0.014	strong	.	LATS1	241	.	NM_001270519	exon4	c.T975C	p.V325V	TCTGCCAACAGGA	.	PASS	Atlas-SNP
FKRP	79147	hgsc.bcm.edu	37	19	47258842	47258842	+	Silent	SNP	C	C	T	rs2287717	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	71	116	0	0.529851	0	C|0.859;T|0.141	0.141	strong	.	FKRP	16	.	NM_024301	exon4	c.C135T	p.A45A	TGCTGCCGGCCCC	.	PASS	Atlas-SNP
FAM161B	145483	hgsc.bcm.edu	37	14	74413129	74413129	+	Silent	SNP	C	C	G	rs7146634	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	63	138	0	0.453237	0	C|0.648;G|0.352	0.352	strong	.	FAM161B	67	.	NM_152445	exon2	c.G423C	p.G141G	CCATCTCCCTTTC	.	PASS	Atlas-SNP
REXO1	57455	hgsc.bcm.edu	37	19	1819125	1819125	+	Missense_Mutation	SNP	T	T	C	rs2396359	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	62	115	0	0.529915	0	T|0.668;C|0.332	0.332	strong	REXO1,NS,carcinoma,0,1	REXO1	55	1	NM_020695	exon8	c.A2656G	p.S886G	GGCCACTGGTTTC	.	PASS	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	37	11	5021055	5021055	+	Missense_Mutation	SNP	C	C	G	rs61734126	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	88	155	0	0.553459	0	C|0.918;G|0.082	0.082	strong	.	OR51L1	60	.	NM_001004755	exon1	c.C843G	p.I281M	AGACATCTACCTT	.	PASS	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	37	4	47578971	47578971	+	Missense_Mutation	SNP	G	G	A	rs16851681	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	277	148	268	1	0.534296	0.00373134	G|0.728;A|0.272	0.272	strong	.	ATP10D	168	.	NM_020453	exon19	c.G3548A	p.R1183K	TTTACAGAAGTGG	.	PASS	Atlas-SNP
SPATA5	166378	hgsc.bcm.edu	37	4	123949389	123949389	+	Missense_Mutation	SNP	G	G	C	rs35343500	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	66	148	0	0.503817	0	G|0.967;C|0.033	0.033	strong	.	SPATA5	62	.	NM_145207	exon11	c.G1918C	p.E640Q	AAGTTGGAACAGG	.	PASS	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	37	11	55681566	55681566	+	Missense_Mutation	SNP	G	G	A	rs61749302	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	28	65	1	0.571429	0.0153846	G|0.903;A|0.097	0.097	strong	OR5W2,NS,carcinoma,+1,5	OR5W2	112	5	NM_001001960	exon1	c.C493T	p.R165C	ATAGGCGGAAGGC	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152283236	152283236	+	Missense_Mutation	SNP	T	T	C	rs11581433	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	76	207	0	0.429379	0	T|0.807;C|0.193	0.193	strong	FLG,NS,carcinoma,+1,1	FLG	900	1	NM_002016	exon3	c.A4126G	p.R1376G	CTTGTCTGTGCCC	.	PASS	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	37	6	107391213	107391213	+	Silent	SNP	C	C	T	rs3814072	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	53	78	0	0.540816	0	C|0.925;T|0.075	0.075	strong	.	BEND3	70	.	NM_001080450	exon5	c.G1182A	p.T394T	GTCCTGCGTGTCC	.	PASS	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	37	4	42576646	42576646	+	Missense_Mutation	SNP	C	C	T	rs61755862	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	218	110	198	0	0.504587	0	C|0.975;T|0.025	0.025	strong	ATP8A1_ENST00000264449,NS,carcinoma,+1,2	ATP8A1	206	2	NM_001105529	exon14	c.G1285A	p.V429I	AAGCAACTCCCGC	.	PASS	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	37	9	113538122	113538122	+	Missense_Mutation	SNP	G	G	A	rs2274419	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	219	100	226	0	0.456621	0	G|0.885;A|0.115	0.115	strong	.	MUSK	112	.	NM_005592	exon9	c.G1239A	p.M413I	GGTAATGGAAGAG	.	PASS	Atlas-SNP
PMM2	5373	hgsc.bcm.edu	37	16	8906914	8906914	+	Missense_Mutation	SNP	A	A	C	rs34258285	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	56	122	0	0.427481	0	A|0.984;C|0.016	0.016	strong	.	PMM2	25	.	NM_000303	exon7	c.A590C	p.E197A	ATGTGGAAAATGA	.	PASS	Atlas-SNP
RBAK	57786	hgsc.bcm.edu	37	7	5105208	5105208	+	Silent	SNP	C	C	T	rs36026500	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	42	63	0	0.477273	0	C|0.872;T|0.128	0.128	strong	.	RBAK	82	.	NM_001204456	exon6	c.C2121T	p.N707N	TATGAACGTACTT	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	237087	237087	+	Missense_Mutation	SNP	A	A	G	rs1045288	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	111	0	1	0	A|0.201;G|0.799	0.799	strong	.	PSMD13	53	.	NM_175932	exon1	c.A38G	p.N13S	GCCAGAACTCCGG	.	PASS	Atlas-SNP
TCEB3C	162699	hgsc.bcm.edu	37	18	44555147	44555147	+	Missense_Mutation	SNP	T	T	G	rs139717358	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	399	124	350	0	0.310777	0	T|0.924;G|0.076	0.076	strong	TCEB3C,NS,carcinoma,0,1	TCEB3C	49	1	NM_145653	exon1	c.A1067C	p.E356A	ACCCCTTCCACGT	.	scavenged	Atlas-SNP
GPR31	2853	hgsc.bcm.edu	37	6	167571266	167571266	+	Silent	SNP	A	A	T	rs4569938	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	37	67	0	0.560606	0	A|0.955;T|0.045	0.045	strong	.	GPR31	44	.	NM_005299	exon1	c.T54A	p.G18G	CAAGACACCCACA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105411971	105411971	+	Missense_Mutation	SNP	T	T	C	rs28737397	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	52	145	0	1	0	T|0.898;C|0.102	0.102	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A9817G	p.S3273G	CCATGCTGGGCTG	.	PASS	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	37	19	19654189	19654189	+	Silent	SNP	G	G	A	rs45556231	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	70	156	1	0.397727	0.00641026	G|0.842;A|0.158	0.158	strong	CILP2,NS,carcinoma,0,1	CILP2	84	1	NM_153221	exon7	c.G1110A	p.S370S	GCGCTCGGGCACT	.	scavenged	Atlas-SNP
PPOX	5498	hgsc.bcm.edu	37	1	161139738	161139738	+	Missense_Mutation	SNP	G	G	A	rs36013429	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	65	124	0	0.471014	0	G|0.955;A|0.045	0.045	strong	.	PPOX	34	.	NM_000309	exon9	c.G911A	p.R304H	TGGCTCGTGCCCT	.	PASS	Atlas-SNP
AARS	16	hgsc.bcm.edu	37	16	70303580	70303580	+	Silent	SNP	G	G	A	rs2070203	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	44	62	0	0.5	0	G|0.526;A|0.474	0.474	strong	.	AARS	62	.	NM_001605	exon7	c.C903T	p.H301H	CCGAGCGTGGTCA	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910335	29910335	+	Missense_Mutation	SNP	C	C	T	rs200058378		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	7	186	1	0.0382514	0.00537634	C|0.999;T|0.001	0.001	weak	HLA-A,NS,carcinoma,-1,1	HLA-A	89	1	NM_001242758	exon1	c.C5T	p.A2V	GGATGGCCGTCAT	.	scavenged	Atlas-SNP
CIDEC	63924	hgsc.bcm.edu	37	3	9918811	9918811	+	Missense_Mutation	SNP	G	G	A	rs61742367	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	52	91	0	0.5	0	G|0.982;A|0.018	0.018	strong	CIDEC,NS,adenoma,0,2	CIDEC	22	2	NM_001199623	exon3	c.C185T	p.T62M	TCCGCCGTGCTTA	.	PASS	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	37	16	10769958	10769958	+	Missense_Mutation	SNP	T	T	C	rs2719710	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	68	107	0	0.507463	0	T|0.469;C|0.531	0.531	strong	.	TEKT5	66	.	NM_144674	exon5	c.A944G	p.Q315R	CGCAGCTGGATGG	.	PASS	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	37	2	80530062	80530062	+	Missense_Mutation	SNP	T	T	C	rs76300062	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	118	224	0	0.510823	0	T|0.979;C|0.021	0.021	strong	.	LRRTM1	251	.	NM_178839	exon2	c.A883G	p.I295V	GCTCGATGTAGGT	.	PASS	Atlas-SNP
R3HDM1	23518	hgsc.bcm.edu	37	2	136393658	136393658	+	Missense_Mutation	SNP	A	A	G	rs961360	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	102	123	0	1	0	A|0.689;G|0.311	0.311	strong	R3HDM1,NS,carcinoma,-2,1	R3HDM1	84	1	NM_015361	exon11	c.A808G	p.M270V	CTGTAGATGAGAA	.	PASS	Atlas-SNP
COLEC11	78989	hgsc.bcm.edu	37	2	3691548	3691548	+	Missense_Mutation	SNP	A	A	G	rs7567833	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	52	112	0	0.485981	0	A|0.765;G|0.235	0.235	strong	.	COLEC11	93	.	NM_001255985	exon8	c.A698G	p.H233R	CTGACCACTCCCC	.	PASS	Atlas-SNP
MAP4K3	8491	hgsc.bcm.edu	37	2	39494378	39494378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	3	53	0	0.0422535	0	.	.	none	MAP4K3,right_lower_lobe,carcinoma,0,1	MAP4K3	109	1	NM_003618	exon27	c.G1984A	p.V662I	CTGATACAGAAAA	.	scavenged	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	37	22	39966856	39966856	+	Silent	SNP	C	C	T	rs3747178	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	65	145	0	0.451389	0	C|0.650;T|0.350	0.350	strong	.	CACNA1I	264	.	NM_001003406	exon1	c.C99T	p.S33S	CCCATCCTCCCCG	.	PASS	Atlas-SNP
F5	2153	hgsc.bcm.edu	37	1	169526019	169526019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	95	196	0	0.456731	0	.	.	none	F5,colon,carcinoma,0,1	F5	301	1	NM_000130	exon6	c.G817A	p.G273S	CCTGGCCGTTGAA	.	PASS	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	37	19	13919757	13919757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	4	96	0	0.0519481	0	.	.	none	.	ZSWIM4	69	.	NM_023072	exon4	c.T820C	p.Y274H	GGCGGCTACTACG	.	PASS	Atlas-SNP
PCMTD2	55251	hgsc.bcm.edu	37	20	62896665	62896665	+	Silent	SNP	G	G	A	rs17878941	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	70	177	0	0.411765	0	G|0.867;A|0.133	0.133	strong	.	PCMTD2	35	.	NM_001104925	exon4	c.G465A	p.P155P	TTCTCCGGATTGT	.	PASS	Atlas-SNP
EMID1	129080	hgsc.bcm.edu	37	22	29630337	29630337	+	Missense_Mutation	SNP	G	G	A	rs3950176	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	37	82	0	0.381443	0	G|0.849;A|0.151	0.151	strong	.	EMID1	33	.	NM_133455	exon12	c.G1073A	p.R358Q	GGCAGCGGGTAAG	.	PASS	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	37	11	101323770	101323770	+	Silent	SNP	C	C	T	rs12805398	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	100	216	0	0.465116	0	C|0.909;T|0.091	0.091	strong	.	TRPC6	132	.	NM_004621	exon13	c.G2712A	p.Q904Q	TGTATTCTGAGAT	.	PASS	Atlas-SNP
GOLGA6L1	283767	hgsc.bcm.edu	37	15	22743249	22743249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	3	11	0	0.0833333	0	.	.	none	GOLGA6L1,caecum,carcinoma,0,1	GOLGA6L1	20	1	NM_001001413	exon8	c.T1634A	p.M545K	AGGAGATGATGCA	.	scavenged	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	37	11	8646763	8646763	+	Missense_Mutation	SNP	G	G	C	rs7935453	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	43	49	0	1	0	G|0.719;C|0.281	0.281	strong	.	TRIM66	45	.	NM_014818	exon11	c.C1888G	p.L630V	TGCTCAGCGAGGT	.	PASS	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	37	17	21319399	21319399	+	Missense_Mutation	SNP	A	A	G	rs4985866	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	38	199	1	0.185366	0.00502513	A|0.625;G|0.375	0.375	strong	KCNJ12,NS,neuroblastoma,0,1	.	.	1	NM_001194958	exon3	c.A745G	p.I249V	GACCAGATCGACA	.	scavenged	Atlas-SNP
CASP10	843	hgsc.bcm.edu	37	2	202050677	202050677	+	Silent	SNP	A	A	G	rs3900115	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	66	109	0	0.564103	0	A|0.545;G|0.455	0.455	strong	.	CASP10	95	.	NM_032976	exon2	c.A177G	p.S59S	AGCCTCAGATGTT	.	PASS	Atlas-SNP
GSDMA	284110	hgsc.bcm.edu	37	17	38122686	38122686	+	Missense_Mutation	SNP	G	G	A	rs7212944	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	58	113	0	0.491525	0	G|0.646;A|0.354	0.354	strong	.	GSDMA	26	.	NM_178171	exon3	c.G388A	p.E130K	GTGCAGGAGAGGT	.	PASS	Atlas-SNP
LRRC18	474354	hgsc.bcm.edu	37	10	50121454	50121454	+	Silent	SNP	G	G	A	rs41302987	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	94	218	0	0.467662	0	G|0.956;A|0.044	0.044	strong	.	LRRC18	52	.	NM_001006939	exon1	c.C747T	p.D249D	CCAGGAGTCCTTG	.	PASS	Atlas-SNP
INMT	11185	hgsc.bcm.edu	37	7	30795331	30795331	+	Missense_Mutation	SNP	A	A	G	rs2302340	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	93	105	0	1	0	A|0.661;G|0.339	0.339	strong	INMT,NS,carcinoma,0,1	INMT	38	1	NM_006774	exon3	c.A656G	p.E219G	AGAAAGAGGAGGT	.	PASS	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	37	1	205812912	205812912	+	Missense_Mutation	SNP	A	A	G	rs7518979	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	25	70	0	0.396825	0	A|0.764;G|0.236	0.236	strong	.	PM20D1	56	.	NM_152491	exon6	c.T710C	p.I237T	ACTGCAATCCTGT	.	PASS	Atlas-SNP
NUDT18	79873	hgsc.bcm.edu	37	8	21965113	21965113	+	Missense_Mutation	SNP	T	T	C	rs3739435	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	70	0	0.457143	0	T|0.476;C|0.524	0.524	strong	.	NUDT18	13	.	NM_024815	exon5	c.A670G	p.M224V	GCTCCATAGGGTC	.	PASS	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	37	7	139415943	139415943	+	Silent	SNP	G	G	A	rs4074826	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	123	284	0	0.5125	0	G|0.847;A|0.153	0.153	strong	.	HIPK2	192	.	NM_022740	exon2	c.C891T	p.P297P	TTTGAGGGGCAAG	.	PASS	Atlas-SNP
FBXO30	84085	hgsc.bcm.edu	37	6	146125793	146125793	+	Missense_Mutation	SNP	A	A	T	rs3811102	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	127	142	0	1	0	A|0.672;T|0.328	0.328	strong	.	FBXO30	56	.	NM_032145	exon2	c.T1749A	p.H583Q	CCTCAAATGGCGG	.	PASS	Atlas-SNP
POU5F1B	5462	hgsc.bcm.edu	37	8	128428638	128428638	+	Missense_Mutation	SNP	G	G	A	rs75641460	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	107	98	0	1	0	.	.	weak	.	POU5F1B	32	.	NM_001159542	exon1	c.G527A	p.G176E	TATTTGGGAAGGT	.	PASS	Atlas-SNP
SPZ1	84654	hgsc.bcm.edu	37	5	79617039	79617039	+	Silent	SNP	A	A	G	rs374023153		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	70	136	0	0.482759	0	.	.	weak	.	SPZ1	60	.	NM_032567	exon1	c.A1005G	p.V335V	GAGAGTAGAGATT	.	PASS	Atlas-SNP
FGG	2266	hgsc.bcm.edu	37	4	155533035	155533035	+	Missense_Mutation	SNP	G	G	C	rs148685782	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	27	89	0	0.375	0	G|0.998;C|0.002	0.002	strong	.	FGG	71	.	NM_000509	exon4	c.C323G	p.A108G	AAAGTAGCAGCGT	.	PASS	Atlas-SNP
SETMAR	6419	hgsc.bcm.edu	37	3	4358476	4358476	+	Missense_Mutation	SNP	C	C	T	rs115195721	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	8	37	0	0.258065	0	C|0.991;T|0.009	0.009	strong	SETMAR,NS,carcinoma,0,1	SETMAR	30	1	NM_006515	exon3	c.C1601T	p.T534I	TGGTCACTATTTG	.	PASS	Atlas-SNP
HSPD1	3329	hgsc.bcm.edu	37	2	198363504	198363504	+	Silent	SNP	A	A	G	rs1050347	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	295	132	265	0	0.447458	0	A|0.813;G|0.187	0.187	strong	.	HSPD1	68	.	NM_002156	exon2	c.T69C	p.T23T	AGCCCGAGTGAGA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152285413	152285413	+	Missense_Mutation	SNP	T	T	C	rs111791016	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	458	6	448	0	0.0131004	0	T|0.995;C|0.005	0.005	strong	FLG,NS,carcinoma,-1,1	FLG	900	1	NM_002016	exon3	c.A1949G	p.Q650R	TGCTCCTGAGCAG	.	scavenged	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	37	19	48305651	48305651	+	Missense_Mutation	SNP	G	G	A	rs62130758	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	21	47	0	0.84	0	G|0.764;A|0.236	0.236	strong	.	TPRX1	46	.	NM_198479	exon2	c.C617T	p.P206L	GGGATCGGGCCTG	.	PASS	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	37	9	116973273	116973273	+	Silent	SNP	C	C	T	rs34350265	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	41	99	0	0.465909	0	C|0.906;T|0.094	0.094	strong	.	COL27A1	200	.	NM_032888	exon12	c.C2334T	p.G778G	GCCTGGCGTTCCT	.	PASS	Atlas-SNP
DFNB31	25861	hgsc.bcm.edu	37	9	117166311	117166311	+	Silent	SNP	G	G	A	rs34963246	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	25	55	0	0.431034	0	A|0.112;G|0.887;T|0.000	0.112	strong	.	DFNB31	100	.	NM_015404	exon10	c.C2283T	p.S761S	GTCCTCGCTTAGA	.	PASS	Atlas-SNP
MRGPRX2	117194	hgsc.bcm.edu	37	11	19077765	19077765	+	Missense_Mutation	SNP	T	T	C	rs10833049	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	58	62	0	0.637363	0	C|0.329;G|0.000;T|0.671	0.329	strong	MRGPRX2,NS,carcinoma,0,1	MRGPRX2	42	1	NM_054030	exon2	c.A185G	p.N62S	AAGGCGTTCCTGC	.	PASS	Atlas-SNP
GDF15	9518	hgsc.bcm.edu	37	19	18497024	18497024	+	Missense_Mutation	SNP	G	G	C	rs1059519	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	64	121	0	0.492308	0	G|0.292;C|0.708	0.708	strong	GDF15,hand,carcinoma,0,1	GDF15	31	1	NM_004864	exon1	c.G25C	p.V9L	AGGACGGTGAATG	.	PASS	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	37	4	5170126	5170126	+	Missense_Mutation	SNP	G	G	A	rs200882867	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	2	138	0	0.0106952	0	.	.	weak	STK32B,colon,carcinoma,+1,2	STK32B	87	2	NM_018401	exon3	c.G209A	p.R70Q	TTTTCCGGGAGCT	.	scavenged	Atlas-SNP
TMEM176B	28959	hgsc.bcm.edu	37	7	150493495	150493495	+	Missense_Mutation	SNP	G	G	A	rs11546671	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	21	38	0	0.5	0	G|0.973;A|0.027	0.027	strong	.	TMEM176B	36	.	NM_014020	exon2	c.C163T	p.P55S	TGGAAGGCACAGT	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32137565	32137565	+	Missense_Mutation	SNP	G	G	A	rs1057994	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	59	134	0	0.406897	0	G|0.852;A|0.148	0.148	strong	.	.	.	.	NM_018169	exon4	c.G3676A	p.V1226I	AGAGATGTCACTG	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	37	14	20871973	20871973	+	Missense_Mutation	SNP	T	T	C	rs2228035	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	40	76	0	0.57971	0	T|0.952;C|0.048	0.048	strong	.	TEP1	224	.	NM_007110	exon6	c.A1103G	p.K368R	GCAAATTTGTCCG	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50558946	50558946	+	Silent	SNP	A	A	G	rs71316583	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	29	44	0	0.557692	0	A|0.954;G|0.046	0.046	strong	.	MOV10L1	238	.	NM_018995	exon10	c.A1470G	p.Q490Q	ACGACAACTTCCA	.	PASS	Atlas-SNP
TSSC4	10078	hgsc.bcm.edu	37	11	2424647	2424647	+	Missense_Mutation	SNP	G	G	A	rs2234281	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	86	149	0	0.534162	0	G|0.920;A|0.080	0.080	strong	.	TSSC4	19	.	NM_005706	exon2	c.G784A	p.G262R	CTGGCCGGGCCCG	.	PASS	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	37	11	108464209	108464209	+	Missense_Mutation	SNP	T	T	C	rs2640738	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	184	0	1	0	T|0.609;C|0.391	0.391	strong	EXPH5,NS,carcinoma,0,1	EXPH5	193	1	NM_015065	exon1	c.A55G	p.R19G	TCTTCCTGGCCTC	.	PASS	Atlas-SNP
PHLDB3	653583	hgsc.bcm.edu	37	19	43990795	43990795	+	Missense_Mutation	SNP	G	G	A	rs117243018	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	34	68	0	0.43038	0	G|0.984;A|0.016	0.016	strong	.	PHLDB3	30	.	NM_198850	exon12	c.C1394T	p.A465V	GCCATGGCCTGCT	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6172138	6172138	+	Silent	SNP	G	G	A	rs377198574		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	18	48	0	0.580645	0	.	.	weak	.	VWF	338	.	NM_000552	exon13	c.C1515T	p.R505R	CCTCCCGCGGCCA	.	PASS	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	37	17	1565211	1565211	+	Silent	SNP	T	T	C	rs118000367	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	55	133	0	0.44	0	T|0.983;C|0.017	0.017	strong	.	PRPF8	169	.	NM_006445	exon25	c.A4011G	p.Q1337Q	GTCGGATTGGGGG	.	PASS	Atlas-SNP
PSAPL1	768239	hgsc.bcm.edu	37	4	7435486	7435486	+	Missense_Mutation	SNP	G	G	T	rs61738677	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	67	54	0	0.971014	0	G|0.900;T|0.100	0.100	strong	.	PSAPL1	51	.	NM_001085382	exon1	c.C1121A	p.A374E	TGGACTGCCCGGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152279729	152279729	+	Missense_Mutation	SNP	C	C	T	rs3126072	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	302	165	265	0	0.546358	0	C|0.682;T|0.318	0.318	strong	FLG,NS,carcinoma,+1,1	FLG	900	1	NM_002016	exon3	c.G7633A	p.G2545R	AGTGTCCAGAGCT	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44073889	44073889	+	Silent	SNP	A	A	G	rs1052553	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	118	145	0	0.991597	0	A|0.865;G|0.135	0.135	strong	MAPT_ENST00000344290,NS,carcinoma,0,2	MAPT	135	2	NM_001123066	exon11	c.A1686G	p.A562A	GGTGGCAGTGGTC	.	PASS	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	37	5	5209210	5209210	+	Missense_Mutation	SNP	G	G	A	rs16875054	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	83	143	0	0.5	0	G|0.938;A|0.062	0.062	strong	.	ADAMTS16	543	.	NM_139056	exon10	c.G1456A	p.A486T	AGCACCGCTCAAG	.	PASS	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	37	20	1610894	1610894	+	Silent	SNP	G	G	A	rs3746721	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	29	53	0	0.527273	0	G|0.742;A|0.258	0.258	strong	SIRPG,NS,carcinoma,0,1	SIRPG	61	1	NM_018556	exon5	c.C1140T	p.Y380Y	GGGGACGTAGATG	.	PASS	Atlas-SNP
FAM150B	285016	hgsc.bcm.edu	37	2	287646	287646	+	Silent	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	4	4	4	0	1	0	.	.	none	.	FAM150B	12	.	NM_001002919	exon2	c.C190A	p.R64R	AGTCCCGCCCGAG	.	PASS	Atlas-SNP
MYO1E	4643	hgsc.bcm.edu	37	15	59517011	59517011	+	Silent	SNP	G	G	A	rs373337685		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	38	90	0	0.463415	0	.	.	weak	.	MYO1E	99	.	NM_004998	exon8	c.C654T	p.G218G	AGAGGCGCCCTCG	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48313510	48313510	+	Missense_Mutation	SNP	A	A	G	rs17547830	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	44	109	0	0.427184	0	A|0.781;G|0.219	0.219	strong	.	ABCA13	1192	.	NM_152701	exon17	c.A4247G	p.H1416R	AAGGTCATCTTCA	.	PASS	Atlas-SNP
GTPBP2	54676	hgsc.bcm.edu	37	6	43590408	43590408	+	Silent	SNP	G	G	A	rs16896609	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	45	97	0	0.454545	0	G|0.812;A|0.188	0.188	strong	.	GTPBP2	39	.	NM_019096	exon10	c.C1429T	p.L477L	GCGCCAGTGTAGC	.	PASS	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	37	22	50895020	50895020	+	Silent	SNP	C	C	T	rs5771001	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	33	32	0	0.578947	0	C|0.661;T|0.339	0.339	strong	.	SBF1	211	.	NM_002972	exon30	c.G3987A	p.A1329A	GGCCAGCGCGTCT	.	PASS	Atlas-SNP
CACTIN	58509	hgsc.bcm.edu	37	19	3611972	3611972	+	Silent	SNP	G	G	A	rs2158935	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	76	0	1	0	G|0.545;A|0.455	0.455	strong	.	.	.	.	NM_021231	exon10	c.C2226T	p.N742N	GATGCCGTTGGCA	.	PASS	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	37	1	43108188	43108188	+	Silent	SNP	G	G	A	rs12036818	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	102	200	0	0.525773	0	G|0.891;A|0.109	0.109	strong	.	CCDC30	78	.	NM_001080850	exon12	c.G1683A	p.L561L	TACCCTGCTTCTA	.	PASS	Atlas-SNP
PLEKHS1	79949	hgsc.bcm.edu	37	10	115535599	115535599	+	Silent	SNP	T	T	C	rs3750901	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	89	170	0	0.486339	0	T|0.813;C|0.187	0.187	strong	.	PLEKHS1	19	.	NM_024889	exon11	c.T1065C	p.A355A	TCTTGCTCTCACA	.	PASS	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	37	6	138628515	138628515	+	Silent	SNP	G	G	T	rs61752335	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	43	142	0	0.417476	0	G|0.992;T|0.008	0.008	strong	.	KIAA1244	236	.	NM_020340	exon23	c.G3954T	p.L1318L	GTACCTGGTTGGT	.	PASS	Atlas-SNP
TMEM132A	54972	hgsc.bcm.edu	37	11	60703777	60703777	+	Missense_Mutation	SNP	G	G	A	rs55920775	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	106	86	0	1	0	G|0.795;A|0.205	0.205	strong	.	TMEM132A	135	.	NM_017870	exon11	c.G2473A	p.E825K	GAGACCGAAGCCA	.	PASS	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39835817	39835817	+	Missense_Mutation	SNP	A	A	G	rs2296172	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	29	38	0	0.537037	0	A|0.855;G|0.145	0.145	strong	.	MACF1	909	.	NM_012090	exon47	c.A6868G	p.M2290V	ACTTCTATGAGTG	.	PASS	Atlas-SNP
APOL1	8542	hgsc.bcm.edu	37	22	36661646	36661646	+	Missense_Mutation	SNP	G	G	A	rs136176	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	54	86	0	0.519231	0	G|0.154;A|0.846	0.846	strong	.	APOL1	35	.	NM_145343	exon7	c.G812A	p.R271K	AGGTGAGGGAGTT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152279841	152279841	+	Missense_Mutation	SNP	G	G	C	rs3126074	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	336	169	284	0	0.502976	0	G|0.693;C|0.307	0.307	strong	.	FLG	900	.	NM_002016	exon3	c.C7521G	p.H2507Q	TCCTGAGTGCCCA	.	PASS	Atlas-SNP
C1orf111	284680	hgsc.bcm.edu	37	1	162344102	162344102	+	Silent	SNP	C	C	T	rs2282397	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	78	147	0	0.513158	0	C|0.672;T|0.328	0.328	strong	.	C1orf111	26	.	NM_182581	exon3	c.G522A	p.R174R	GTGCCACCTGGAA	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	37	7	20683204	20683204	+	Silent	SNP	G	G	T	rs7349983	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	88	192	0	0.429268	0	G|0.928;T|0.072	0.072	strong	.	ABCB5	357	.	NM_001163941	exon7	c.G627T	p.V209V	CCTAGTGACTCTA	.	PASS	Atlas-SNP
DDX20	11218	hgsc.bcm.edu	37	1	112308972	112308972	+	Silent	SNP	G	G	A	rs197413	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	43	103	0	0.417476	0	G|0.512;A|0.488	0.488	strong	.	DDX20	50	.	NM_007204	exon11	c.G1926A	p.V642V	CCCTGTGTTGGCA	.	PASS	Atlas-SNP
LGALS9	3965	hgsc.bcm.edu	37	17	25970642	25970642	+	Missense_Mutation	SNP	A	A	T	rs361498	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	459	219	376	0	0.477124	0	A|0.874;T|0.126	0.126	strong	.	LGALS9	29	.	NM_009587	exon5	c.A536T	p.Q179L	GCAGACAAAAAGT	.	PASS	Atlas-SNP
EPB41L2	2037	hgsc.bcm.edu	37	6	131190838	131190838	+	Silent	SNP	G	G	A	rs17059736	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	103	210	0	0.432773	0	G|0.841;A|0.159	0.159	strong	.	EPB41L2	96	.	NM_001431	exon15	c.C2472T	p.P824P	CTCTCCGGGTATC	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1029320	1029320	+	Missense_Mutation	SNP	C	C	T	rs11604757	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	19	40	0	0.404255	0	C|0.945;T|0.055	0.055	strong	.	MUC6	408	.	NM_005961	exon10	c.G1183A	p.G395R	AGTGTCCGGGGCA	.	PASS	Atlas-SNP
ZNF668	79759	hgsc.bcm.edu	37	16	31072909	31072909	+	Missense_Mutation	SNP	G	G	A	rs8046978	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	17	16	0	0.607143	0	G|0.851;A|0.149	0.149	strong	.	ZNF668	121	.	NM_001172669	exon4	c.C1409T	p.A470V	CCTGCTGCCGGGG	.	PASS	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	37	9	334337	334337	+	Missense_Mutation	SNP	A	A	G	rs10970979	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	78	142	0	0.493671	0	A|0.758;G|0.242	0.242	strong	.	DOCK8	401	.	NM_203447	exon11	c.A1238G	p.N413S	TCTTCAATGTCTC	.	PASS	Atlas-SNP
APBA2	321	hgsc.bcm.edu	37	15	29346590	29346590	+	Missense_Mutation	SNP	C	C	T	rs148760039	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	52	148	0	0.371429	0	C|0.998;T|0.002	0.002	strong	APBA2,caecum,carcinoma,0,2	APBA2	132	2	NM_005503	exon3	c.C503T	p.P168L	CCATTCCGGAGGA	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24409191	24409191	+	Missense_Mutation	SNP	C	C	T	rs4320729	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	27	69	0	0.409091	0	C|0.679;T|0.321	0.321	strong	.	MYOM3	131	.	NM_152372	exon17	c.G1984A	p.G662R	TCAGCCCGGGAAC	.	PASS	Atlas-SNP
ARMC6	93436	hgsc.bcm.edu	37	19	19164983	19164983	+	Silent	SNP	C	C	T	rs142816550	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	69	102	0	0.526718	0	C|0.985;T|0.015	0.015	strong	.	ARMC6	56	.	NM_001199196	exon6	c.C876T	p.I292I	TGGCATCCTGAGC	.	PASS	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	37	19	33605300	33605300	+	Missense_Mutation	SNP	A	A	G	rs10416265	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	52	94	0	0.40625	0	A|0.517;G|0.483	0.483	strong	.	GPATCH1	79	.	NM_018025	exon15	c.A2171G	p.H724R	AAGAGCATGCACC	.	PASS	Atlas-SNP
NKX1-2	390010	hgsc.bcm.edu	37	10	126136112	126136112	+	Silent	SNP	A	A	G	rs7075981	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	35	70	1	0.522388	0.0142857	A|0.824;G|0.176	0.176	strong	NKX1-2_ENST00000440536,NS,carcinoma,0,2	NKX1-2	6	2	NM_001146340	exon2	c.T819C	p.N273N	GAGGACATTGGCC	.	scavenged	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6897464	6897464	+	Missense_Mutation	SNP	C	C	G	rs330880	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	250	109	216	0	0.436	0	C|0.551;G|0.449	0.449	strong	.	EMR1	153	.	NM_001256253	exon5	c.C420G	p.S140R	CAGCAGCGTCTGC	.	PASS	Atlas-SNP
ANXA13	312	hgsc.bcm.edu	37	8	124710664	124710664	+	Missense_Mutation	SNP	C	C	T	rs6995099	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	53	114	0	0.424	0	C|0.936;T|0.064	0.064	strong	.	ANXA13	38	.	NM_001003954	exon5	c.G445A	p.V149I	TGAGGACGGACTC	.	PASS	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	37	16	77359919	77359919	+	Missense_Mutation	SNP	A	A	T	rs11640912	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	92	79	0	0.989247	0	A|0.625;T|0.375	0.375	strong	.	ADAMTS18	270	.	NM_199355	exon13	c.T1876A	p.L626I	AGAATAAGCCACC	.	PASS	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93641175	93641175	+	Silent	SNP	C	C	T	rs2306041	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	59	114	0	0.472	0	C|0.822;T|0.178	0.178	strong	.	SYK	132	.	NM_003177	exon11	c.C1521T	p.Y507Y	ACATTACGCCAAG	.	PASS	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	37	7	55238087	55238087	+	Silent	SNP	C	C	T	rs10258429	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	93	160	0	0.492063	0	C|0.889;T|0.111	0.111	strong	.	EGFR	20426	.	NM_201284	exon16	c.C1968T	p.H656H	GTCCCACCAGAGC	.	PASS	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	37	19	36351935	36351935	+	Silent	SNP	G	G	T	rs35854130	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	16	28	0	0.410256	0	G|0.811;T|0.189	0.189	strong	.	KIRREL2	170	.	NM_199180	exon8	c.G1053T	p.A351A	TGGCGCGCAGGTA	.	PASS	Atlas-SNP
GJA4	2701	hgsc.bcm.edu	37	1	35259946	35259946	+	Silent	SNP	G	G	A	rs1764389	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	116	185	0	0.560386	0	G|0.731;A|0.269	0.269	strong	GJA4,NS,carcinoma,0,1	GJA4	25	1	NM_002060	exon2	c.G132A	p.V44V	GTCAGTGTGGGGT	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254257	39254257	+	Missense_Mutation	SNP	G	G	T	rs142487897	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	71	125	0	0.482993	0	G|0.982;T|0.018	0.018	strong	.	KRTAP4-8	57	.	NM_031960	exon1	c.C80A	p.P27H	CAGCTGGGGCAGC	.	PASS	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	37	X	53263764	53263764	+	Silent	SNP	C	C	T	rs184087864	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	96	80	0	0.932039	0	C|0.937;T|0.063	0.063	strong	.	IQSEC2	195	.	NM_001111125	exon15	c.G4104A	p.L1368L	CAGGGGCAGTGGG	.	PASS	Atlas-SNP
CTSE	1510	hgsc.bcm.edu	37	1	206328803	206328803	+	Silent	SNP	T	T	C	rs41302235	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	186	186	0	0.989362	0	T|0.768;C|0.232	0.232	strong	.	CTSE	72	.	NM_001910	exon7	c.T870C	p.P290P	TGGCCCTTCCGAC	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39580660	39580660	+	Missense_Mutation	SNP	T	T	C	rs9916724	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	80	136	0	0.503145	0	T|0.619;C|0.381	0.381	strong	.	KRT37	61	.	NM_003770	exon1	c.A116G	p.N39S	GCAGCATTGGCCT	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	37	14	20876253	20876253	+	Missense_Mutation	SNP	A	A	G	rs1760897	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	184	192	1	1	0.00520833	A|0.635;G|0.365	0.365	strong	.	TEP1	224	.	NM_007110	exon2	c.T346C	p.S116P	GACTAGAGAGGGT	.	PASS	Atlas-SNP
SLC22A23	63027	hgsc.bcm.edu	37	6	3284097	3284097	+	Silent	SNP	C	C	T	rs142838841	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	19	57	0	0.431818	0	C|0.997;T|0.003	0.003	strong	.	SLC22A23	89	.	NM_015482	exon9	c.G1692A	p.P564P	CACCGTCGGGGTG	.	PASS	Atlas-SNP
POF1B	79983	hgsc.bcm.edu	37	X	84563194	84563194	+	Missense_Mutation	SNP	C	C	T	rs75398746	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	139	158	0	1	0	C|0.996;T|0.004	0.004	strong	.	POF1B	77	.	NM_024921	exon10	c.G986A	p.R329Q	ACTAGTCGGAGTG	.	PASS	Atlas-SNP
PAK4	10298	hgsc.bcm.edu	37	19	39663757	39663757	+	Missense_Mutation	SNP	G	G	A	rs56099436	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	8	10	0	0.8	0	G|0.989;A|0.011	0.011	strong	.	PAK4	40	.	NM_001014832	exon3	c.G404A	p.R135Q	GCAGCCGAGGCCG	.	PASS	Atlas-SNP
AQP7	364	hgsc.bcm.edu	37	9	33385815	33385815	+	Missense_Mutation	SNP	T	T	C	rs62542745	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	8	81	4	0.0952381	0.0493827	.	.	weak	AQP7,NS,carcinoma,0,1	AQP7	58	1	NM_001170	exon7	c.A575G	p.Q192R	TTCTCCTGGTCCG	.	scavenged	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	37	2	97359364	97359364	+	Silent	SNP	A	A	G	rs61750875	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	40	82	0	0.45977	0	A|0.802;G|0.198	0.198	strong	.	FER1L5	113	.	NM_001113382	exon31	c.A3495G	p.P1165P	GAACCCACAGGAC	.	PASS	Atlas-SNP
RRP7A	27341	hgsc.bcm.edu	37	22	42910769	42910769	+	Silent	SNP	G	G	A	rs4822146	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	339	114	256	0	0.336283	0	G|0.898;A|0.102	0.102	strong	RRP7A,NS,carcinoma,0,1	RRP7A	25	1	NM_015703	exon5	c.C477T	p.Y159Y	GTCTGCGTAGTCA	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225534348	225534348	+	Missense_Mutation	SNP	G	G	A	rs7535953	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	64	133	0	0.432432	0	G|0.499;A|0.501	0.501	strong	.	DNAH14	300	.	NM_001373	exon69	c.G11009A	p.R3670K	AGTCTAGACTTAC	.	PASS	Atlas-SNP
NCOA4	8031	hgsc.bcm.edu	37	10	51568378	51568378	+	Missense_Mutation	SNP	T	T	G	rs10761581	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	49	127	0	0.422414	0	T|0.572;G|0.428	0.428	strong	NCOA4_ENST00000452682,NS,carcinoma,0,1	NCOA4	58	1	NM_001145261	exon2	c.T22G	p.F8V	ACCACTTTTGCTC	.	PASS	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	37	5	52347369	52347369	+	Silent	SNP	C	C	T	rs1126643	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	63	132	0	0.552632	0	C|0.629;T|0.371	0.371	strong	.	ITGA2	211	.	NM_002203	exon7	c.C759T	p.F253F	CACATTCGGAGCA	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62299603	62299603	+	Silent	SNP	T	T	G	rs9635356	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	89	207	0	0.46114	0	T|0.950;G|0.050	0.050	strong	.	VPS13C	506	.	NM_020821	exon15	c.A1194C	p.I398I	CTTTTTTATGTTA	.	PASS	Atlas-SNP
DHX33	56919	hgsc.bcm.edu	37	17	5354204	5354204	+	Missense_Mutation	SNP	G	G	C	rs11653658	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	42	110	0	0.477273	0	G|0.935;C|0.065	0.065	strong	.	DHX33	41	.	NM_020162	exon9	c.C1447G	p.H483D	CCTTATGTTCAAG	.	PASS	Atlas-SNP
MLXIP	22877	hgsc.bcm.edu	37	12	122623000	122623000	+	Silent	SNP	T	T	C	rs4758686	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	92	122	0	0.989247	0	T|0.472;C|0.528	0.528	strong	.	MLXIP	46	.	NM_014938	exon14	c.T2286C	p.T762T	GAAGACTGTGGAG	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43531008	43531008	+	Missense_Mutation	SNP	T	T	C	rs220126	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	132	114	0	0.992481	0	T|0.215;C|0.785	0.785	strong	.	UMODL1	186	.	NM_173568	exon11	c.T1676C	p.M559T	GCCCCATGGGCGG	.	PASS	Atlas-SNP
OR52N1	79473	hgsc.bcm.edu	37	11	5809230	5809230	+	Silent	SNP	G	G	A	rs12794769	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	116	82	0	1	0	G|0.828;A|0.172	0.172	strong	.	OR52N1	70	.	NM_001001913	exon1	c.C817T	p.L273L	TGTGTAGAGGAAT	.	PASS	Atlas-SNP
ABHD15	116236	hgsc.bcm.edu	37	17	27889986	27889986	+	Missense_Mutation	SNP	T	T	C	rs542939	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	47	92	0	0.479592	0	T|0.268;C|0.732	0.732	strong	.	ABHD15	18	.	NM_198147	exon2	c.A1000G	p.T334A	AGTAGGTATCCCA	.	PASS	Atlas-SNP
SGCG	6445	hgsc.bcm.edu	37	13	23824783	23824783	+	Silent	SNP	T	T	G	rs1800351	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	40	79	0	0.43956	0	T|0.510;G|0.490	0.490	strong	.	SGCG	64	.	NM_000231	exon4	c.T312G	p.L104L	TCTGCTTCTACAA	.	PASS	Atlas-SNP
WDR4	10785	hgsc.bcm.edu	37	21	44273858	44273858	+	Missense_Mutation	SNP	G	G	A	rs15736	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	18	31	0	0.642857	0	G|0.581;A|0.419	0.419	strong	.	WDR4	35	.	NM_018669	exon9	c.C796T	p.P266S	CCACAGGAGTGCT	.	PASS	Atlas-SNP
CCDC169-SOHLH2	100526761	hgsc.bcm.edu	37	13	36744800	36744800	+	Silent	SNP	G	G	A	rs2296967	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	89	155	0	0.486339	0	G|0.916;A|0.084	0.084	strong	SOHLH2,NS,carcinoma,0,1	.	.	1	NM_001198910	exon15	c.C1356T	p.Y452Y	TGCATCGTAGGAA	.	PASS	Atlas-SNP
ZNF202	7753	hgsc.bcm.edu	37	11	123599897	123599897	+	Silent	SNP	G	G	A	rs11825443	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	21	40	0	0.362069	0	G|0.965;A|0.035	0.035	strong	.	ZNF202	72	.	NM_003455	exon6	c.C639T	p.D213D	AGGAAGGTCTGGG	.	PASS	Atlas-SNP
LINGO1	84894	hgsc.bcm.edu	37	15	77907658	77907658	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	62	104	0	0.5	0	.	.	none	.	LINGO1	76	.	NM_032808	exon2	c.G591A	p.T197T	CTCCAGCGTCAGC	.	PASS	Atlas-SNP
C1QTNF6	114904	hgsc.bcm.edu	37	22	37581422	37581422	+	Missense_Mutation	SNP	G	G	C	rs229526	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	38	51	0	0.558824	0	G|0.791;C|0.208	0.208	strong	.	C1QTNF6	32	.	NM_182486	exon2	c.C125G	p.P42R	ACCATAGGGATCT	.	PASS	Atlas-SNP
OGFOD3	79701	hgsc.bcm.edu	37	17	80352303	80352303	+	Missense_Mutation	SNP	G	G	A	rs62079523	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	37	88	0	0.435294	0	G|0.728;A|0.272	0.272	strong	.	.	.	.	NM_175902	exon9	c.C940T	p.P314S	TCTCGGGCGGGTG	.	PASS	Atlas-SNP
PSMG4	389362	hgsc.bcm.edu	37	6	3264527	3264527	+	Missense_Mutation	SNP	T	T	C	rs4959789	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	107	0	1	0	T|0.464;C|0.536	0.536	strong	PSMG4_ENST00000419065,colon,carcinoma,0,4	PSMG4	23	4	NM_001128592	exon3	c.T335C	p.L112P	CCACTCTTCCCAC	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	37	19	10089262	10089262	+	Silent	SNP	G	G	A	rs12610207	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	138	255	1	0.505495	0.00392157	G|0.342;A|0.658	0.658	strong	.	COL5A3	243	.	NM_015719	exon41	c.C3006T	p.P1002P	CCCCACGGGCCCT	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	37	15	56207811	56207811	+	Missense_Mutation	SNP	T	T	G	rs62043855	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	107	209	1	0.527094	0.00478469	T|0.841;G|0.159	0.159	strong	.	NEDD4	167	.	NM_198400	exon1	c.A1219C	p.N407H	CAGAATTAAGCTT	.	PASS	Atlas-SNP
HIF3A	64344	hgsc.bcm.edu	37	19	46823702	46823702	+	Missense_Mutation	SNP	A	A	G	rs3764609	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	30	48	2	0.517241	0.0416667	A|0.820;G|0.180	0.180	strong	HIF3A_ENST00000377670,brain,glioma,0,2	HIF3A	154	2	NM_152795	exon9	c.A1028G	p.Q343R	CCAGCCAGGTGGA	.	scavenged	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386173	7386173	+	Silent	SNP	G	G	T	rs181183603		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	401	6	316	1	0.0149626	0.00316456	.	.	weak	POLR2A_ENST00000412468,NS,carcinoma,+1,1	.	.	1	NM_001102614	exon2	c.G870T	p.V290V	CGAGGTGGTGGTG	.	scavenged	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50582550	50582550	+	Silent	SNP	C	C	A	rs2272836	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	244	124	218	0	0.508197	0	C|0.812;A|0.188	0.188	strong	.	MOV10L1	238	.	NM_018995	exon18	c.C2383A	p.R795R	GACAGTCGGATTT	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	37	1	232564297	232564297	+	Missense_Mutation	SNP	T	T	A	rs3210731	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	111	253	0	0.486842	0	T|0.624;A|0.376	0.376	strong	.	SIPA1L2	218	.	NM_020808	exon15	c.A4270T	p.M1424L	CATCCATCTCACT	.	PASS	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	37	9	7170006	7170006	+	Missense_Mutation	SNP	G	G	A	rs7022348	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	60	130	0	0.508475	0	G|0.846;A|0.154	0.154	strong	.	KDM4C	186	.	NM_001146694	exon21	c.G3110A	p.S1037N	AAAAAAGCCAATG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306973	1306973	+	Missense_Mutation	SNP	A	A	G	rs79313952	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	529	180	310	0	0.340265	0	A|0.652;G|0.348	0.348	strong	TPSD1,NS,NS,0,1	TPSD1	47	1	NM_012217	exon3	c.A430G	p.I144V	AGCCACATCCACA	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370952	240370952	+	Missense_Mutation	SNP	C	C	T	rs201741828	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	12	148	0	0.0944882	0	C|0.986;G|0.000;T|0.014	0.014	strong	FMN2,NS,carcinoma,+1,2	FMN2	451	2	NM_020066	exon5	c.C2840T	p.P947L	CGCCCCCTCTACC	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579102	55579102	+	Missense_Mutation	SNP	C	C	T	rs34961497	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	100	199	0	0.440529	0	C|0.907;T|0.093	0.093	strong	OR5L1,NS,carcinoma,-1,1	OR5L1	145	1	NM_001004738	exon1	c.C160T	p.R54W	AGCTCTCGGCTCC	.	PASS	Atlas-SNP
FAM71F1	84691	hgsc.bcm.edu	37	7	128359133	128359133	+	Missense_Mutation	SNP	C	C	T	rs6949056	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	38	110	0	0.447059	0	C|0.765;N|0.000	.	strong	.	FAM71F1	42	.	NM_032599	exon3	c.C683T	p.S228L	GAGATTCGAAGGT	.	PASS	Atlas-SNP
ZNF214	7761	hgsc.bcm.edu	37	11	7022360	7022360	+	Missense_Mutation	SNP	A	A	C	rs2239734	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	56	125	0	0.451613	0	A|0.909;C|0.091	0.091	strong	.	ZNF214	65	.	NM_013249	exon3	c.T554G	p.I185R	TGAACTATGAGCT	.	PASS	Atlas-SNP
SPATC1L	84221	hgsc.bcm.edu	37	21	47581949	47581949	+	Missense_Mutation	SNP	C	C	T	rs113146399	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	21	37	0	0.466667	0	C|0.944;T|0.056	0.056	strong	.	.	.	.	NM_001142854	exon4	c.G577A	p.A193T	CGCGCGCGTCCTT	.	PASS	Atlas-SNP
STOML1	9399	hgsc.bcm.edu	37	15	74277795	74277795	+	Silent	SNP	T	T	C	rs10851866	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	128	158	1	1	0.00632911	T|0.294;C|0.706	0.706	strong	.	STOML1	22	.	NM_001256672	exon5	c.A654G	p.A218A	CTCCACTGCCAGC	.	PASS	Atlas-SNP
SCML4	256380	hgsc.bcm.edu	37	6	108029109	108029109	+	Silent	SNP	T	T	C	rs3734754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	46	104	0	0.403509	0	T|0.784;C|0.216	0.216	strong	SCML4_ENST00000369020,colon,carcinoma,0,1	SCML4	65	1	NM_198081	exon7	c.A1080G	p.P360P	AGCCTGTGGGTCG	.	PASS	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	37	13	38156538	38156538	+	Missense_Mutation	SNP	C	C	T	rs117103342	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	56	92	0	0.478632	0	C|0.994;T|0.006	0.006	strong	.	POSTN	161	.	NM_006475	exon10	c.G1357A	p.G453R	TGCCTCCGATGGT	.	PASS	Atlas-SNP
ZNF780B	163131	hgsc.bcm.edu	37	19	40540812	40540812	+	Missense_Mutation	SNP	G	G	A	rs115484124	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	54	113	0	0.457627	0	G|0.979;A|0.021	0.021	strong	ZNF780B_ENST00000434248,NS,carcinoma,+1,2	ZNF780B	143	2	NM_001005851	exon5	c.C1954T	p.R652C	AGACACGATTAAA	.	PASS	Atlas-SNP
NASP	4678	hgsc.bcm.edu	37	1	46073697	46073697	+	Missense_Mutation	SNP	C	C	A	rs200497808	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	353	10	301	6	0.0283286	0.0199336	C|0.985;A|0.015	0.015	strong	NASP,NS,carcinoma,0,3	NASP	77	3	NM_002482	exon6	c.C1114A	p.P372T	GAGGCTCCAGTTC	.	scavenged	Atlas-SNP
TANC2	26115	hgsc.bcm.edu	37	17	61315272	61315272	+	Silent	SNP	G	G	A	rs2460111	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	117	119	0	1	0	G|0.463;A|0.537	0.537	strong	TANC2_ENST00000389520,NS,lymphoid_neoplasm,0,2	TANC2	266	2	NM_025185	exon6	c.G645A	p.Q215Q	TTGGCAGTCTCAA	.	PASS	Atlas-SNP
LYSMD3	116068	hgsc.bcm.edu	37	5	89820984	89820984	+	Silent	SNP	T	T	C	rs10069050	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	77	140	0	0.469512	0	T|0.410;C|0.590	0.590	strong	.	LYSMD3	25	.	NM_198273	exon2	c.A123G	p.E41E	TCGAAGTTCATAC	.	PASS	Atlas-SNP
PCTP	58488	hgsc.bcm.edu	37	17	53844742	53844742	+	Missense_Mutation	SNP	G	G	A	rs112454522	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	51	112	0	0.525773	0	G|0.993;A|0.007	0.007	strong	.	PCTP	17	.	NM_021213	exon2	c.G188A	p.C63Y	AGGACTGCTCACC	.	PASS	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	37	2	107423188	107423188	+	Silent	SNP	G	G	A	rs1470591	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	63	103	1	0.492188	0.00970874	G|0.679;A|0.321	0.321	strong	ST6GAL2,NS,carcinoma,-1,1	ST6GAL2	159	1	NM_032528	exon6	c.C1536T	p.P512P	GAAGCCGGGAAGA	.	scavenged	Atlas-SNP
PTGIR	5739	hgsc.bcm.edu	37	19	47124714	47124714	+	Silent	SNP	T	T	G	rs2229129	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	43	96	0	0.462366	0	T|0.599;G|0.401	0.401	strong	PTGIR,NS,carcinoma,0,1	PTGIR	31	1	NM_000960	exon3	c.A984C	p.S328S	CCTCCCTGAGGCG	.	PASS	Atlas-SNP
ZNF287	57336	hgsc.bcm.edu	37	17	16469879	16469879	+	Missense_Mutation	SNP	T	T	C	rs149325980	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	85	131	0	0.551948	0	T|1.000;A|0.000	.	alt	.	ZNF287	60	.	NM_020653	exon3	c.A461G	p.H154R	AAAGCATGTTTTC	.	PASS	Atlas-SNP
HAGH	3029	hgsc.bcm.edu	37	16	1869940	1869940	+	Silent	SNP	G	G	A	rs146440574	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	50	89	0	0.531915	0	G|0.999;A|0.001	0.001	strong	.	HAGH	20	.	NM_005326	exon4	c.C390T	p.I130I	GGCCCCGATACGG	.	PASS	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43269704	43269704	+	Silent	SNP	T	T	C	rs62112127	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	16	25	0	0.390244	0	T|0.624;C|0.376	0.376	strong	.	PSG8	101	.	NM_001130168	exon1	c.A30G	p.T10T	GCGCTGTGTGCAG	.	PASS	Atlas-SNP
SLC7A9	11136	hgsc.bcm.edu	37	19	33353061	33353061	+	Missense_Mutation	SNP	G	G	T	rs1007160	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	40	108	0	0.454545	0	G|0.697;T|0.303	0.303	strong	.	SLC7A9	78	.	NM_001243036	exon6	c.C667A	p.L223M	ACGCCAGGCTGAT	.	PASS	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	37	1	43047057	43047057	+	Silent	SNP	A	A	G	rs12037518	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	322	171	266	0	0.531056	0	A|0.811;G|0.189	0.189	strong	.	CCDC30	78	.	NM_001080850	exon8	c.A1092G	p.E364E	ATTAGAACATGCT	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123842498	123842498	+	Silent	SNP	T	T	A	rs41288000	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	14	28	0	0.5	0	T|0.987;A|0.013	0.013	strong	.	TACC2	271	.	NM_206862	exon4	c.T483A	p.S161S	CAGCTCTACTCCA	.	PASS	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	37	3	174814909	174814909	+	Missense_Mutation	SNP	G	G	A	rs150099163	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	111	0	0.473118	0	G|0.998;A|0.002	0.002	strong	.	NAALADL2	86	.	NM_207015	exon2	c.G373A	p.V125I	TGCCACGTCTTAA	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39464736	39464736	+	Missense_Mutation	SNP	C	C	G	rs2074284	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	103	102	0	0.990385	0	C|0.672;G|0.328	0.328	strong	.	KRTAP16-1	12	.	NM_001146182	exon1	c.G770C	p.S257T	GAGCAACTTGGCT	.	PASS	Atlas-SNP
VDR	7421	hgsc.bcm.edu	37	12	48272895	48272895	+	Missense_Mutation	SNP	A	A	G	rs2228570	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	33	42	0	0.970588	0	T|0.044;G|0.570;C|0.097;A|0.288	0.570	strong	.	VDR	47	.	NM_001017536	exon3	c.T152C	p.M51T	GCCTCCATCCCTG	.	PASS	Atlas-SNP
ZNF441	126068	hgsc.bcm.edu	37	19	11892255	11892255	+	Missense_Mutation	SNP	G	G	C	rs146452126	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	15	32	0	0.348837	0	G|0.994;C|0.006	0.006	strong	.	ZNF441	123	.	NM_152355	exon4	c.G1616C	p.G539A	GGAAAGGCTTCAG	.	PASS	Atlas-SNP
DEK	7913	hgsc.bcm.edu	37	6	18258286	18258286	+	Silent	SNP	C	C	T	rs144486575	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	20	35	0	0.47619	0	C|0.999;T|0.001	0.001	strong	.	DEK	31	.	NM_003472	exon4	c.G255A	p.G85G	TTTCTGCCCCTTT	.	PASS	Atlas-SNP
ODAM	54959	hgsc.bcm.edu	37	4	71062308	71062308	+	Silent	SNP	C	C	A	rs61747755	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	376	160	436	0	0.425532	0	C|0.906;A|0.094	0.094	strong	.	ODAM	38	.	NM_017855	exon1	c.C48A	p.A16A	GTCAGCCCCAGTA	.	PASS	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	37	22	26695077	26695077	+	Missense_Mutation	SNP	G	G	T	rs663048	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	56	86	0	0.470588	0	G|0.765;T|0.235	0.235	strong	.	SEZ6L	174	.	NM_001184777	exon5	c.G1290T	p.M430I	TAAGATGCTGACA	.	PASS	Atlas-SNP
NDUFAF7	55471	hgsc.bcm.edu	37	2	37459326	37459326	+	Missense_Mutation	SNP	C	C	T	rs146409773		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	65	115	0	0.488722	0	C|1.000;T|0.000	0.000	weak	.	.	.	.	NM_001083946	exon2	c.C133T	p.R45W	ATGCTGCGGCATC	.	PASS	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154842243	154842243	+	Silent	SNP	A	A	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	6	25	4	0.142857	0.16	.	.	none	KCNN3,NS,carcinoma,0,3	KCNN3	141	3	NM_001204087	exon1	c.T198G	p.L66L	CTGCTGAAGCTGC	.	scavenged	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	37	3	89521664	89521664	+	Missense_Mutation	SNP	G	G	A	rs17801309	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	85	197	0	0.488506	0	G|0.933;A|0.067	0.067	strong	.	EPHA3	501	.	NM_005233	exon16	c.G2741A	p.R914H	CCTTCCGCACAAC	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52777439	52777439	+	Silent	SNP	A	A	G	rs1614888	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	64	132	0	0.5	0	A|0.686;G|0.314	0.314	strong	.	KRT84	61	.	NM_033045	exon2	c.T690C	p.S230S	CTGATCACTGACC	.	PASS	Atlas-SNP
MGEA5	10724	hgsc.bcm.edu	37	10	103577629	103577629	+	Missense_Mutation	SNP	C	C	T	rs35402016	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	11	13	0	0.52381	0	C|0.996;T|0.004	0.004	strong	.	MGEA5	53	.	NM_001142434	exon1	c.G151A	p.A51T	CCCCGGCCACCGC	.	PASS	Atlas-SNP
CEP55	55165	hgsc.bcm.edu	37	10	95276742	95276742	+	Missense_Mutation	SNP	G	G	C	rs41308663	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	42	85	0	0.451613	0	G|0.948;C|0.052	0.052	strong	CEP55,NS,carcinoma,0,1	CEP55	35	1	NM_018131	exon6	c.G730C	p.A244P	GCAAGTGCAAAAA	.	PASS	Atlas-SNP
BAIAP2L1	55971	hgsc.bcm.edu	37	7	97933601	97933601	+	Silent	SNP	C	C	T	rs1045916	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	53	109	0	0.469027	0	C|0.383;T|0.617	0.617	strong	.	BAIAP2L1	61	.	NM_018842	exon12	c.G1329A	p.L443L	CATGGACAAGCAT	.	PASS	Atlas-SNP
RHCE	6006	hgsc.bcm.edu	37	1	25747230	25747230	+	Missense_Mutation	SNP	G	G	C	rs586178	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	85	214	2	0.988372	0.00934579	C|0.343;G|0.657	0.343	strong	RHCE,NS,carcinoma,0,1	RHCE	36	1	NM_138617	exon1	c.C48G	p.C16W	TAGGGCGCAGAGG	.	scavenged	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	37	19	53116940	53116940	+	Missense_Mutation	SNP	T	T	A	rs75857698	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	21	96	0	0.318182	0	T|0.867;A|0.133	0.133	strong	.	ZNF83	73	.	NM_018300	exon3	c.A878T	p.E293V	CCACACTCATTAC	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57983162	57983162	+	Missense_Mutation	SNP	A	A	G	rs7103026	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	62	108	0	0.639175	0	A|0.817;G|0.183	0.183	strong	OR1S1,NS,carcinoma,0,2	OR1S1	139	2	NM_001004458	exon1	c.A946G	p.K316E	CTGAGAAAGCTCA	.	PASS	Atlas-SNP
GPR146	115330	hgsc.bcm.edu	37	7	1097394	1097394	+	Silent	SNP	T	T	C	rs11767527	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	19	65	0	0.431818	0	T|0.898;C|0.102	0.102	strong	GPR146,NS,carcinoma,0,3	GPR146	20	3	NM_138445	exon1	c.T243C	p.P81P	GGCCCCTGTGCAC	.	PASS	Atlas-SNP
KIAA0753	9851	hgsc.bcm.edu	37	17	6524298	6524298	+	Missense_Mutation	SNP	T	T	A	rs9889363	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	59	71	0	1	0	T|0.697;A|0.303	0.303	strong	.	KIAA0753	63	.	NM_014804	exon7	c.A1125T	p.E375D	TTTCTTTTCCAGG	.	PASS	Atlas-SNP
TTK	7272	hgsc.bcm.edu	37	6	80741243	80741243	+	Silent	SNP	A	A	T	rs1801465	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	38	83	0	0.436782	0	A|0.883;T|0.117	0.117	strong	.	TTK	199	.	NM_003318	exon14	c.A1581T	p.I527I	TTCCATATTAAAG	.	PASS	Atlas-SNP
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2079665	2079665	+	Missense_Mutation	SNP	G	G	A	rs55864883	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	48	107	0	0.475248	0	.	.	weak	.	SLC9A3R2	24	.	NM_004785	exon2	c.G296A	p.R99Q	GCCGGCGGCAGCT	.	PASS	Atlas-SNP
AASDH	132949	hgsc.bcm.edu	37	4	57219613	57219613	+	Silent	SNP	C	C	T	rs17086696	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	60	108	0	0.425532	0	C|0.825;T|0.175	0.175	strong	.	AASDH	101	.	NM_181806	exon9	c.G1533A	p.P511P	CTCATCCGGGACT	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274426	39274426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	3	107	0	0.0277778	0	.	.	none	KRTAP4-11,NS,carcinoma,+2,4	KRTAP4-11	94	4	NM_033059	exon1	c.A142T	p.S48C	AGCAGCTGGACAC	.	scavenged	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	37	16	88504850	88504850	+	Missense_Mutation	SNP	G	G	C	rs1105066	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	21	57	0	0.488372	0	G|0.601;C|0.399	0.399	strong	.	ZNF469	121	.	NM_001127464	exon2	c.G10888C	p.E3630Q	GTGTCTGAGGGGG	.	PASS	Atlas-SNP
CLEC18C	283971	hgsc.bcm.edu	37	16	70211380	70211380	+	Silent	SNP	G	G	A	rs3869429		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	301	65	409	0	0.215947	0	.	.	weak	CLEC18C,NS,carcinoma,+1,1	CLEC18C	15	1	NM_173619	exon3	c.G453A	p.T151T	CTACACGCAGGTG	.	scavenged	Atlas-SNP
KIF3B	9371	hgsc.bcm.edu	37	20	30915461	30915461	+	Silent	SNP	T	T	C	rs1129012	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	46	98	0	0.474227	0	A|0.000;C|0.216;G|0.000;T|0.784	0.216	strong	KIF3B,NS,carcinoma,0,1	KIF3B	75	1	NM_004798	exon7	c.T1965C	p.Y655Y	CCGATATAGGGTG	.	PASS	Atlas-SNP
SP110	3431	hgsc.bcm.edu	37	2	231077112	231077112	+	Missense_Mutation	SNP	G	G	A	rs28930679	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	186	192	0	0.989362	0	G|0.797;A|0.203	0.203	strong	.	SP110	105	.	NM_001185015	exon6	c.C635T	p.A212V	TCTTCCGCATTCA	.	PASS	Atlas-SNP
AOAH	313	hgsc.bcm.edu	37	7	36763688	36763688	+	Silent	SNP	C	C	T	rs2228411	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	24	49	0	0.521739	0	C|0.590;T|0.410	0.410	strong	AOAH,NS,carcinoma,0,2	AOAH	79	2	NM_001177507	exon1	c.G66A	p.S22S	AGAGGCCGAGGAC	.	PASS	Atlas-SNP
BPIFB3	359710	hgsc.bcm.edu	37	20	31652292	31652292	+	Missense_Mutation	SNP	G	G	A	rs4911290	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	63	176	0	0.434483	0	G|0.588;A|0.412	0.412	strong	.	.	.	.	NM_182658	exon7	c.G682A	p.V228M	GGGTCCGTGGAAT	.	PASS	Atlas-SNP
SLC13A2	9058	hgsc.bcm.edu	37	17	26817537	26817537	+	Silent	SNP	G	G	A	rs11568466	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	62	115	0	0.488189	0	G|0.830;C|0.000;A|0.170	0.170	strong	.	SLC13A2	125	.	NM_001145975	exon3	c.G444A	p.A148A	CATCGCGGTGGAA	.	PASS	Atlas-SNP
IL1R2	7850	hgsc.bcm.edu	37	2	102641015	102641015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	3	152	0	0.0163934	0	.	.	none	IL1R2,colon,carcinoma,-2,1	IL1R2	58	1	NM_001261419	exon7	c.T772C	p.C258R	ATCCCGTGTAAGG	.	scavenged	Atlas-SNP
NPSR1	387129	hgsc.bcm.edu	37	7	34851393	34851393	+	Silent	SNP	C	C	G	rs9655357	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	40	91	1	0.336134	0.010989	C|0.847;G|0.153	0.153	strong	NPSR1_ENST00000359791,NS,carcinoma,+2,2	NPSR1	134	2	NM_207172	exon4	c.C396G	p.L132L	GCTGCTCTACGCC	.	scavenged	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	37	3	193183817	193183817	+	Silent	SNP	A	A	G	rs3796181	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	38	78	0	0.431818	0	A|0.474;G|0.526	0.526	strong	.	ATP13A4	154	.	NM_032279	exon11	c.T1269C	p.S423S	TACCCCACTAAGC	.	PASS	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	37	1	226027659	226027659	+	Silent	SNP	C	C	T	rs2292568	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	63	147	0	0.463235	0	C|0.950;N|0.001	.	strong	.	EPHX1	57	.	NM_001136018	exon6	c.C852T	p.P284P	GTACCCCGTCAAG	.	PASS	Atlas-SNP
TMEM51	55092	hgsc.bcm.edu	37	1	15546077	15546077	+	Silent	SNP	G	G	A	rs3753313	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	53	135	0	0.456897	0	G|0.767;A|0.233	0.233	strong	TMEM51,NS,lymphoid_neoplasm,+1,1	TMEM51	28	1	NM_018022	exon3	c.G600A	p.P200P	GAAACCGCTGAAA	.	PASS	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111898387	111898387	+	Silent	SNP	A	A	G	rs74367861	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	80	146	0	0.503145	0	A|0.902;G|0.098	0.098	strong	SLC9A10,NS,carcinoma,0,1	.	.	1	NM_183061	exon23	c.T2910C	p.T970T	CACTACAGTTTTG	.	PASS	Atlas-SNP
TPP1	1200	hgsc.bcm.edu	37	11	6636106	6636106	+	Silent	SNP	T	T	A	rs1128396	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	48	80	0	0.494845	0	T|0.785;A|0.215	0.215	strong	.	TPP1	71	.	NM_000391	exon12	c.A1542T	p.G514G	AAAGAGTCCTGCC	.	PASS	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28821613	28821613	+	Silent	SNP	C	C	T	rs35746006	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	45	108	0	0.555556	0	C|0.931;T|0.069	0.069	strong	PLB1_ENST00000422425,rectum,carcinoma,0,2	PLB1	255	2	NM_153021	exon35	c.C2460T	p.P820P	TGTTCCCGGAGCA	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36850940	36850940	+	Silent	SNP	G	G	C	rs41310010	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	23	38	0	0.547619	0	G|0.891;C|0.109	0.109	strong	.	KIAA1755	145	.	NM_001029864	exon10	c.C2328G	p.P776P	TAGGCCGGGGTCC	.	PASS	Atlas-SNP
RPH3AL	9501	hgsc.bcm.edu	37	17	171137	171137	+	Silent	SNP	C	C	A	rs78269977	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	30	82	0	0.535714	0	C|0.917;A|0.083	0.083	strong	.	RPH3AL	18	.	NM_001190413	exon3	c.G147T	p.P49P	CTCCGCCGGGCTG	.	PASS	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	37	2	131976353	131976353	+	Silent	SNP	C	C	T	rs62177516	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	445	59	378	1	0.132584	0.0026455	C|0.500;T|0.500	0.500	weak	POTE2_HUMAN,right_upper_lobe,carcinoma,+1,2	.	.	2	NM_001083538	exon1	c.C378T	p.S126S	TGACAGCGCCTTC	.	scavenged	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	37	2	238283605	238283605	+	Silent	SNP	G	G	A	rs12622093	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	20	44	0	0.322581	0	G|0.795;A|0.205	0.205	strong	COL6A3_ENST00000392004,NS,carcinoma,0,2	COL6A3	608	2	NM_004369	exon8	c.C3129T	p.G1043G	AGGGAAGCCGCTC	.	PASS	Atlas-SNP
HDHD1	8226	hgsc.bcm.edu	37	X	7023678	7023678	+	Missense_Mutation	SNP	G	G	A	rs1131197	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	119	127	0	0.991667	0	0|0.023;T|0.097	.	strong	.	HDHD1	21	.	NM_001135565	exon3	c.C332T	p.T111M	GCAGCCGTGGGGA	.	PASS	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	37	7	135123060	135123060	+	Missense_Mutation	SNP	G	G	C	rs17480616	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	49	133	0	0.466667	0	G|0.983;C|0.017	0.017	strong	.	CNOT4	146	.	NM_001190850	exon2	c.C20G	p.A7G	TCCTTCGCATCAG	.	PASS	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	37	4	162841653	162841653	+	Silent	SNP	G	G	A	rs359502	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	116	261	0	0.487395	0	G|0.914;A|0.086	0.086	strong	.	FSTL5	207	.	NM_020116	exon4	c.C312T	p.D104D	TTCTCCGTCAGAT	.	PASS	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	37	2	102792875	102792875	+	Silent	SNP	A	A	C	rs3917320	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	37	90	0	0.324561	0	A|0.943;C|0.057	0.057	strong	.	IL1R1	52	.	NM_000877	exon11	c.A1366C	p.R456R	TTAGTCAGAGAAA	.	PASS	Atlas-SNP
CRYBB2	1415	hgsc.bcm.edu	37	22	25627604	25627604	+	Silent	SNP	G	G	A	rs8140949	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	57	146	0	0.398601	0	G|0.756;A|0.244	0.244	strong	.	CRYBB2	18	.	NM_000496	exon6	c.G483A	p.G161G	CCGTGGGCTGCAG	.	PASS	Atlas-SNP
DENND2C	163259	hgsc.bcm.edu	37	1	115130353	115130353	+	Silent	SNP	C	C	T	rs61000990	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	41	76	0	0.5	0	C|0.949;T|0.051	0.051	strong	.	DENND2C	105	.	NM_001256404	exon19	c.G2652A	p.R884R	ACTTTTCCGAAGC	.	PASS	Atlas-SNP
CIT	11113	hgsc.bcm.edu	37	12	120260706	120260706	+	Silent	SNP	G	G	A	rs145804827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	64	146	0	0.460432	0	G|0.999;A|0.001	0.001	strong	.	CIT	535	.	NM_001206999	exon9	c.C1029T	p.C343C	CTGGCCGCACAAC	.	PASS	Atlas-SNP
LRIT2	340745	hgsc.bcm.edu	37	10	85981801	85981801	+	Missense_Mutation	SNP	T	T	G	rs6585847	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	46	83	0	0.4	0	T|0.443;G|0.557	0.557	strong	LRIT2,colon,carcinoma,0,3	LRIT2	81	3	NM_001017924	exon3	c.A1528C	p.T510P	CAGGGGTGCAGCT	.	PASS	Atlas-SNP
HPS1	3257	hgsc.bcm.edu	37	10	100190920	100190920	+	Silent	SNP	G	G	A	rs1801287	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	171	185	0	1	0	G|0.745;A|0.255	0.255	strong	HPS1,NS,carcinoma,0,1	HPS1	65	1	NM_000195	exon7	c.C636T	p.L212L	GTGCACGAGCAGG	.	PASS	Atlas-SNP
ADRB2	154	hgsc.bcm.edu	37	5	148207447	148207447	+	Silent	SNP	G	G	C	rs1042719	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	42	90	0	0.512195	0	G|0.668;C|0.332	0.332	strong	.	ADRB2	42	.	NM_000024	exon1	c.G1053C	p.G351G	CTATGGGAATGGC	.	PASS	Atlas-SNP
UGT3A2	167127	hgsc.bcm.edu	37	5	36037933	36037933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	57	96	0	0.445312	0	.	.	none	.	UGT3A2	117	.	NM_174914	exon6	c.G1261A	p.A421T	TAAGAGCCAATGT	.	PASS	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	37	18	66513615	66513615	+	Missense_Mutation	SNP	A	A	G	rs2187094	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	96	133	0	0.571429	0	A|0.674;G|0.326	0.326	strong	CCDC102B,NS,carcinoma,0,2	CCDC102B	92	2	NM_001093729	exon6	c.A893G	p.K298R	AGTGGAAGTATGA	.	PASS	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235972867	235972867	+	Silent	SNP	T	T	C	rs1063128	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	42	62	0	0.428571	0	T|0.619;C|0.381	0.381	strong	.	LYST	370	.	NM_000081	exon5	c.A1251G	p.Q417Q	TGCACTTTGAAGA	.	PASS	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	37	16	71025245	71025245	+	Silent	SNP	C	C	T	rs1774516	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	14	145	11	0.0765027	0.0758621	C|0.977;T|0.023	0.023	strong	LOC652153,NS,carcinoma,-1,2	HYDIN	788	2	NM_001270974	exon25	c.G3840A	p.T1280T	AGCTTTCGTTTTT	.	scavenged	Atlas-SNP
LOXL4	84171	hgsc.bcm.edu	37	10	100020880	100020880	+	Missense_Mutation	SNP	C	C	T	rs33995374	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	38	64	0	0.575758	0	C|0.888;T|0.112	0.112	strong	.	LOXL4	60	.	NM_032211	exon4	c.G461A	p.R154Q	AGCCGCCGGCCCT	.	PASS	Atlas-SNP
FAM175B	23172	hgsc.bcm.edu	37	10	126515249	126515249	+	Missense_Mutation	SNP	G	G	A	rs140695652	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	60	138	0	0.454545	0	G|1.000;A|0.000	0.000	strong	.	FAM175B	39	.	NM_032182	exon5	c.G353A	p.R118H	TCACCCGCATCCT	.	PASS	Atlas-SNP
DDX27	55661	hgsc.bcm.edu	37	20	47841660	47841660	+	Missense_Mutation	SNP	G	G	T	rs11553387	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	84	195	0	0.506024	0	A|0.001;C|0.006;G|0.814;T|0.179	0.179	strong	.	DDX27	74	.	NM_017895	exon6	c.G617T	p.G206V	CAGGAGGATTTTT	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80037253	80037253	+	Missense_Mutation	SNP	C	C	T	rs149224679	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	49	76	0	0.505155	0	C|1.000;T|0.000	0.000	strong	FASN,colon,carcinoma,+1,1	FASN	154	1	NM_004104	exon42	c.G7378A	p.A2460T	AGTCCGCGCCCAG	.	PASS	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	37	7	150171710	150171710	+	Silent	SNP	T	T	C	rs60114833	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	39	88	0	0.684211	0	T|0.704;C|0.296	0.296	strong	.	GIMAP8	136	.	NM_175571	exon4	c.T1293C	p.C431C	GCATTGTGTTTTC	.	PASS	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234529540	234529540	+	Silent	SNP	G	G	A	rs1134756	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	58	190	0	0.343195	0	G|0.798;A|0.202	0.202	strong	.	TARBP1	111	.	NM_005646	exon27	c.C4287T	p.D1429D	CTGAACGTCGGTC	.	PASS	Atlas-SNP
PSCA	8000	hgsc.bcm.edu	37	8	143763531	143763531	+	Nonsense_Mutation	SNP	G	G	A	rs138377917	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	64	44	0	1	0	G|0.988;A|0.012	0.012	strong	PSCA,rectum,carcinoma,0,1	PSCA	9	1	NM_005672	exon3	c.G326A	p.W109X	TGCTCTGGGGACC	.	PASS	Atlas-SNP
SCFD1	23256	hgsc.bcm.edu	37	14	31099738	31099738	+	Missense_Mutation	SNP	A	A	G	rs229150	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	49	98	0	0.628205	0	G|0.519;N|0.000	0.519	strong	SCFD1,NS,carcinoma,0,1	SCFD1	43	1	NM_016106	exon3	c.A188G	p.K63R	CTGTGAAGGAGCT	.	PASS	Atlas-SNP
MPRIP	23164	hgsc.bcm.edu	37	17	17062065	17062065	+	Missense_Mutation	SNP	C	C	G	rs138508481	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	18	24	0	0.45	0	C|0.998;G|0.002	0.002	strong	.	MPRIP	87	.	NM_015134	exon14	c.C1795G	p.L599V	GGGATGCTCGACG	.	PASS	Atlas-SNP
C3orf33	285315	hgsc.bcm.edu	37	3	155485302	155485302	+	Missense_Mutation	SNP	C	C	T	rs358733	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	40	34	0	1	0	C|0.161;T|0.839	0.839	strong	.	C3orf33	18	.	NM_173657	exon5	c.G350A	p.S117N	ACCTTACTCACCA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281008	152281008	+	Silent	SNP	A	A	G	rs7512554	bycluster;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	541	174	343	0	0.321627	0	A|0.500;G|0.500	0.500	weak	.	FLG	900	.	NM_002016	exon3	c.T6354C	p.H2118H	ATCATAATGGGAT	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44249096	44249096	+	Silent	SNP	A	A	C	rs17662889	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	22	52	0	0.318841	0	A|0.888;C|0.112	0.112	strong	.	.	.	.	NM_001193466	exon2	c.T414G	p.L138L	GGTTCTAAGATTT	.	PASS	Atlas-SNP
CEP41	95681	hgsc.bcm.edu	37	7	130038814	130038814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	49	49	0	0.550562	0	.	.	none	.	.	.	.	NM_018718	exon11	c.A1040G	p.N347S	GGCAGATTCTGAG	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117725578	117725578	+	Silent	SNP	T	T	A	rs2243378	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	94	0	1	0	T|0.406;A|0.594	0.594	strong	.	ROS1	728	.	NM_002944	exon5	c.A303T	p.L101L	AGTTGGTAGGTCT	.	PASS	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100865836	100865836	+	Missense_Mutation	SNP	G	G	A	rs6468694	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	115	217	0	0.502183	0	G|0.876;A|0.124	0.124	strong	.	VPS13B	811	.	NM_017890	exon56	c.G10294A	p.G3432R	CTCCCTGGGGAAG	.	PASS	Atlas-SNP
RBBP7	5931	hgsc.bcm.edu	37	X	16887655	16887655	+	Missense_Mutation	SNP	C	C	T	rs67984110	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	129	98	0	1	0	C|0.769;T|0.231	0.231	strong	.	RBBP7	58	.	NM_001198719	exon1	c.G110A	p.R37H	GCTGCGCGACCCA	.	PASS	Atlas-SNP
ZNF653	115950	hgsc.bcm.edu	37	19	11598483	11598483	+	Silent	SNP	T	T	C	rs311805	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	89	195	0	0.454082	0	T|0.731;C|0.269	0.269	strong	ZNF653,NS,carcinoma,0,2	ZNF653	48	2	NM_138783	exon4	c.A795G	p.P265P	GCCTGCTGGGTTG	.	PASS	Atlas-SNP
ZNF23	7571	hgsc.bcm.edu	37	16	71487206	71487206	+	Missense_Mutation	SNP	T	T	C	rs2070832	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	36	61	1	0.428571	0.0163934	T|0.279;C|0.721	0.721	strong	ZNF23,NS,carcinoma,0,1	ZNF23	65	1	NM_145911	exon5	c.A82G	p.S28G	GCTCACTTCCTCC	.	scavenged	Atlas-SNP
PPP1CC	5501	hgsc.bcm.edu	37	12	111160003	111160003	+	Silent	SNP	G	G	A	rs1973505	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	89	147	0	0.589404	0	G|0.770;A|0.230	0.230	strong	.	PPP1CC	22	.	NM_002710	exon6	c.C819T	p.C273C	CTCTCCGCAATAA	.	PASS	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204945934	204945934	+	Silent	SNP	A	A	G	rs6657372	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	27	53	0	0.509434	0	A|0.899;G|0.101	0.101	strong	.	NFASC	396	.	NM_001005389	exon16	c.A1842G	p.P614P	CTGCCCATGCTCA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506499	195506499	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	14	13	9	9	0.928571	1	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C11952T	p.P3984P	AGGAAGGGGGGTG	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280347	152280347	+	Missense_Mutation	SNP	C	C	T	rs77166567	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	65	253	1	0.247148	0.00395257	.	.	weak	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.G7015A	p.D2339N	AGCTGTCTGCTGA	.	scavenged	Atlas-SNP
CIT	11113	hgsc.bcm.edu	37	12	120189888	120189888	+	Silent	SNP	T	T	C	rs904654	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	49	100	0	0.408333	0	T|0.506;C|0.494	0.494	strong	.	CIT	535	.	NM_001206999	exon23	c.A2871G	p.T957T	TTCTGCTGTGGTC	.	PASS	Atlas-SNP
ZNF326	284695	hgsc.bcm.edu	37	1	90482944	90482944	+	Missense_Mutation	SNP	A	A	G	rs200399673	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	48	141	0	0.396694	0	A|0.999;G|0.001	0.001	weak	.	ZNF326	60	.	NM_182976	exon8	c.A995G	p.E332G	ATCTGGAAAGTTC	.	PASS	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	37	15	52433397	52433397	+	Silent	SNP	C	C	T	rs17612637	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	60	116	0	0.495868	0	C|0.973;G|0.000;T|0.027	0.027	strong	.	GNB5	28	.	NM_016194	exon7	c.G567A	p.K189K	AACAGACTTCTTT	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	11920	11920	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	8	8	9	0	1	0	.	.	none	.	.	.	.	ENST00000361381	exon1	c.C1161T	p.S387S	GTTCTCCTGATCA	.	PASS	Atlas-SNP
RNF157	114804	hgsc.bcm.edu	37	17	74208466	74208466	+	Silent	SNP	A	A	G	rs61760884	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	83	140	0	0.432292	0	A|0.996;G|0.004	0.004	strong	.	RNF157	66	.	NM_052916	exon2	c.T186C	p.F62F	CCCCAGAAAGTTC	.	PASS	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	37	X	148035200	148035200	+	Silent	SNP	G	G	A	rs12011040	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	170	183	0	0.994152	0	0|0.003;A|0.180	0.180	strong	.	AFF2	679	.	NM_002025	exon10	c.G1488A	p.S496S	TGAGTCGGATTCA	.	PASS	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	37	1	207890866	207890866	+	Missense_Mutation	SNP	T	T	C	rs2796257	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	277	146	265	0	0.527076	0	T|0.675;C|0.325	0.325	strong	.	CR1L	97	.	NM_175710	exon11	c.T1472C	p.L491P	CTCCCCTTGGAGA	.	PASS	Atlas-SNP
SMAD7	4092	hgsc.bcm.edu	37	18	46468946	46468946	+	Missense_Mutation	SNP	G	G	A	rs3764482	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	40	39	0	1	0	G|0.884;A|0.116	0.116	strong	.	SMAD7	22	.	NM_001190823	exon1	c.C83T	p.S28F	AGGGGAGAGAAAG	.	PASS	Atlas-SNP
SLC9A8	23315	hgsc.bcm.edu	37	20	48466166	48466166	+	Silent	SNP	G	G	A	rs6012755	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	102	236	0	0.434043	0	G|0.845;A|0.155	0.155	strong	.	SLC9A8	63	.	NM_001260491	exon6	c.G483A	p.G161G	TTTTGGGACGGCA	.	PASS	Atlas-SNP
CNNM2	54805	hgsc.bcm.edu	37	10	104836853	104836853	+	Silent	SNP	C	C	T	rs35647154	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	19	33	0	0.463415	0	C|0.952;T|0.048	0.048	strong	.	CNNM2	119	.	NM_017649	exon8	c.C2544T	p.D848D	GCCAGACGAGACA	.	PASS	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6901891	6901891	+	Missense_Mutation	SNP	G	G	A	rs897738	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	75	145	0	0.503356	0	G|0.597;T|0.003	.	strong	.	EMR1	153	.	NM_001256253	exon6	c.G520A	p.D174N	GACGTGGATGAAT	.	PASS	Atlas-SNP
KRTAP7-1	337878	hgsc.bcm.edu	37	21	32201951	32201951	+	Silent	SNP	A	A	G	rs9982775	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	187	139	0	0.994681	0	A|0.490;G|0.510	0.510	strong	.	.	.	.	NM_181606	exon2	c.T66C	p.H22H	GGTCCCATGGAAG	.	PASS	Atlas-SNP
ZWINT	11130	hgsc.bcm.edu	37	10	58118630	58118630	+	Missense_Mutation	SNP	T	T	C	rs2241666	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	100	154	0	0.50505	0	C|0.704;N|0.000	0.704	strong	.	ZWINT	39	.	NM_007057	exon6	c.A559G	p.R187G	ACACCCTGTCAAG	.	PASS	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55955444	55955444	+	Missense_Mutation	SNP	T	T	G	rs4935502	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	35	91	0	0.376344	0	G|0.226;N|0.000	0.226	strong	PCDH15_ENST00000417177,colon,carcinoma,-1,12	PCDH15	1715	12	NM_001142763	exon12	c.A1319C	p.D440A	CTTACATCTTCTA	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90151620	90151620	+	Missense_Mutation	SNP	C	C	A	rs201254386	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	96	257	0	0.424779	0	.	.	weak	.	GPR98	605	.	NM_032119	exon82	c.C17657A	p.A5886D	AATGTGCCTGTTC	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910703	29910703	+	Silent	SNP	G	G	T	rs41541222	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	138	217	0	0.563265	0	G|0.915;T|0.085	0.085	strong	HLA-A,colon,carcinoma,+1,1	HLA-A	89	1	NM_001242758	exon2	c.G243T	p.P81P	GGGGCCGGAGTAT	.	PASS	Atlas-SNP
CEL	1056	hgsc.bcm.edu	37	9	135945997	135945997	+	Missense_Mutation	SNP	C	C	T	rs201677850	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	20	201	0	0.0843882	0	C|0.998;T|0.002	0.002	strong	CEL,NS,carcinoma,+1,1	CEL	71	1	NM_001807	exon10	c.C1445T	p.T482I	ACAGGACAGTCTC	.	PASS	Atlas-SNP
ENTPD7	57089	hgsc.bcm.edu	37	10	101445591	101445591	+	Silent	SNP	A	A	C	rs3740078	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	57	117	0	0.456	0	A|0.734;C|0.266	0.266	strong	.	ENTPD7	44	.	NM_020354	exon6	c.A591C	p.P197P	TTTACCACTGGAG	.	PASS	Atlas-SNP
PBXIP1	57326	hgsc.bcm.edu	37	1	154917551	154917551	+	Silent	SNP	C	C	T	rs79526479	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	87	210	0	0.480663	0	C|0.979;G|0.000;T|0.021	0.021	strong	.	PBXIP1	59	.	NM_020524	exon11	c.G2145A	p.A715A	GGGCCCCGCAGCT	.	PASS	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	37	7	31682601	31682601	+	Silent	SNP	T	T	C	rs38396	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	51	127	0	0.392308	0	T|0.862;C|0.138	0.138	strong	.	CCDC129	127	.	NM_001257968	exon11	c.T1695C	p.H565H	CAGCCATCTGTGG	.	PASS	Atlas-SNP
SLC25A39	51629	hgsc.bcm.edu	37	17	42398052	42398052	+	Missense_Mutation	SNP	A	A	G	rs2011951	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	102	100	0	0.980769	0	A|0.426;G|0.574	0.574	strong	.	SLC25A39	24	.	NM_001143780	exon9	c.T739C	p.F247L	GCCTGAACCCATT	.	PASS	Atlas-SNP
SARDH	1757	hgsc.bcm.edu	37	9	136561367	136561367	+	Silent	SNP	G	G	A	rs2502740	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	29	47	0	0.508772	0	G|0.744;A|0.256	0.256	strong	SARDH,NS,carcinoma,0,1	SARDH	112	1	NM_007101	exon14	c.C1785T	p.S595S	ATCTGCGGAGAAG	.	PASS	Atlas-SNP
ESRRG	2104	hgsc.bcm.edu	37	1	216692669	216692669	+	Silent	SNP	C	C	T	rs945453	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	31	67	0	0.492063	0	C|0.442;T|0.558	0.558	strong	.	ESRRG	111	.	NM_001243518	exon7	c.G993A	p.S331S	CTCAAACGAAAGA	.	PASS	Atlas-SNP
PSG3	5671	hgsc.bcm.edu	37	19	43243218	43243218	+	Silent	SNP	A	A	G	rs12185497	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	91	223	0	0.411765	0	A|0.407;G|0.593	0.593	strong	PSG3,NS,carcinoma,0,1	PSG3	82	1	NM_021016	exon2	c.T88C	p.L30L	TAGGCAAGTTCCA	.	PASS	Atlas-SNP
PCNXL4	64430	hgsc.bcm.edu	37	14	60585131	60585131	+	Missense_Mutation	SNP	A	A	G	rs308998	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	282	156	274	1	0.553191	0.00364964	A|0.702;G|0.298	0.298	strong	.	.	.	.	NM_022495	exon6	c.A961G	p.K321E	ACAGAGAAAAAAC	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85972043	85972043	+	Silent	SNP	A	A	G	rs10749482	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	67	97	0	0.515385	0	A|0.585;G|0.415	0.415	strong	.	CDHR1	122	.	NM_001171971	exon15	c.A1662G	p.E554E	CATGGAAGGCAAG	.	PASS	Atlas-SNP
GALNT2	2590	hgsc.bcm.edu	37	1	230384937	230384937	+	Silent	SNP	T	T	C	rs3748006	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	120	188	0	0.540541	0	T|0.822;C|0.178	0.178	strong	.	GALNT2	83	.	NM_004481	exon9	c.T825C	p.D275D	TTTTGATTGGAAC	.	PASS	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	37	14	93118038	93118038	+	Missense_Mutation	SNP	A	A	G	rs3829947	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	65	138	0	0.40625	0	G|0.492;A|0.508	0.492	strong	.	RIN3	81	.	NM_024832	exon6	c.A644G	p.H215R	CAGCCCATGACGC	.	PASS	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	37	1	16044401	16044401	+	Silent	SNP	G	G	A	rs16851970	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	36	95	0	0.363636	0	G|0.797;A|0.203	0.203	strong	.	PLEKHM2	94	.	NM_015164	exon4	c.G291A	p.L97L	CTGGCTGTACCTG	.	PASS	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139275204	139275204	+	Silent	SNP	A	A	C	rs3812570	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	41	74	0	0.561644	0	A|0.591;C|0.409	0.409	strong	.	SNAPC4	82	.	NM_003086	exon19	c.T2487G	p.V829V	AAGATGAACTGGT	.	PASS	Atlas-SNP
TNFSF15	9966	hgsc.bcm.edu	37	9	117552885	117552885	+	Silent	SNP	T	T	C	rs3810936	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	266	265	276	0	0.996241	0	T|0.266;C|0.734	0.734	strong	.	TNFSF15	23	.	NM_005118	exon4	c.A603G	p.V201V	TTCGCATACAGAC	.	PASS	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	37	9	21409439	21409439	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	81	192	0	0.395122	0	.	.	none	.	IFNA8	19	.	NM_002170	exon1	c.C264T	p.F88F	GACCTTCAACCTC	.	PASS	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	37	10	50740600	50740600	+	Silent	SNP	C	C	T	rs4253013	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	33	49	0	0.55	0	C|0.878;T|0.122	0.122	strong	.	ERCC6	162	.	NM_000124	exon2	c.A411A	p.R137R	GTCATCCAGGACC	.	PASS	Atlas-SNP
IRG1	730249	hgsc.bcm.edu	37	13	77531492	77531492	+	Missense_Mutation	SNP	G	G	A	rs61741168	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	119	223	0	0.48374	0	G|0.997;A|0.003	0.003	strong	.	IRG1	1	.	NM_001258406	exon4	c.G806A	p.R269H	TTAAGCGTTTTCC	.	PASS	Atlas-SNP
IMPDH1	3614	hgsc.bcm.edu	37	7	128034629	128034629	+	Silent	SNP	C	C	T	rs2228075	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	26	56	0	0.604651	0	T|0.249;G|0.000;C|0.750	0.249	strong	.	IMPDH1	38	.	NM_000883	exon15	c.G1575A	p.A525A	ACCCTGCGCGATC	.	PASS	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	37	11	129785594	129785594	+	Silent	SNP	G	G	A	rs3734073	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	51	110	0	0.46789	0	G|0.729;A|0.271	0.271	strong	PRDM10,colon,carcinoma,0,1	PRDM10	120	1	NM_020228	exon17	c.C2499T	p.P833P	GCAGACGGGAGGG	.	PASS	Atlas-SNP
ZFYVE1	53349	hgsc.bcm.edu	37	14	73440864	73440864	+	Silent	SNP	C	C	T	rs12931	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	37	100	0	0.445783	0	C|0.501;T|0.499	0.499	strong	.	ZFYVE1	67	.	NM_021260	exon11	c.G2025A	p.T675T	AATGAGCGTTCCA	.	PASS	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	37	5	140228413	140228413	+	Missense_Mutation	SNP	C	C	A	rs17844323	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	114	271	3	1	0.0110701	C|0.819;A|0.181	0.181	strong	PCDHA9_ENST00000532602,bladder,carcinoma,+2,2	PCDHA9	373	2	NM_031857	exon1	c.C333A	p.D111E	CGTAGACAGGCCG	.	scavenged	Atlas-SNP
CXCL16	58191	hgsc.bcm.edu	37	17	4638737	4638737	+	Missense_Mutation	SNP	A	A	G	rs1050998	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	47	98	0	0.465347	0	G|0.428;N|0.001	0.428	strong	CXCL16_ENST00000293778,NS,carcinoma,0,1	CXCL16	30	1	NM_022059	exon4	c.T425C	p.I142T	TGAGAAATTGGGG	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2415801	2415801	+	Silent	SNP	G	G	A	rs61732208	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	35	110	0	0.486111	0	G|0.892;A|0.108	0.108	strong	.	TMPRSS9	79	.	NM_182973	exon10	c.G1605A	p.G535G	GGTGGGGGACCGC	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121215991	121215991	+	Silent	SNP	T	T	C	rs2305600	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	113	97	0	1	0	T|0.409;C|0.591	0.591	strong	.	COL14A1	292	.	NM_021110	exon9	c.T921C	p.S307S	CGCCTCTGAACCA	.	PASS	Atlas-SNP
MINK1	50488	hgsc.bcm.edu	37	17	4797305	4797305	+	Missense_Mutation	SNP	G	G	A	rs2302319	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	67	147	0	0.5	0	G|0.828;A|0.172	0.172	strong	.	MINK1	110	.	NM_153827	exon22	c.G2587A	p.V863I	GACAGCGTCAGCA	.	PASS	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296675	39296675	+	Missense_Mutation	SNP	C	C	T	rs147498528	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	37	118	0	0.430233	0	C|0.997;T|0.003	0.003	strong	KRTAP4-6,NS,carcinoma,+1,2	KRTAP4-6	46	2	NM_030976	exon1	c.G65A	p.R22H	CTGGGGCGGCAGC	.	PASS	Atlas-SNP
NACC2	138151	hgsc.bcm.edu	37	9	138905136	138905136	+	Silent	SNP	C	C	T	rs2280486	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	91	177	0	0.511236	0	C|0.543;T|0.457	0.457	strong	.	NACC2	16	.	NM_144653	exon5	c.G1164A	p.T388T	GGCCAGCGTGTTC	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52777513	52777513	+	Missense_Mutation	SNP	T	T	C	rs2245203	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	64	175	0	0.457143	0	T|0.684;C|0.316	0.316	strong	.	KRT84	61	.	NM_033045	exon2	c.A616G	p.I206V	TCCTGATACATTT	.	PASS	Atlas-SNP
EPHB4	2050	hgsc.bcm.edu	37	7	100420155	100420155	+	Silent	SNP	A	A	G	rs56173078	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	67	124	0	0.485507	0	A|0.905;G|0.095	0.095	strong	.	EPHB4	106	.	NM_004444	exon4	c.T546C	p.G182G	GCAGGCACCCTGG	.	PASS	Atlas-SNP
OR2AE1	81392	hgsc.bcm.edu	37	7	99473858	99473858	+	Missense_Mutation	SNP	G	G	C	rs17161997	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	102	93	0	0.990291	0	G|0.862;C|0.138	0.138	strong	.	OR2AE1	32	.	NM_001005276	exon1	c.C799G	p.L267V	GCAATAGAGTGCA	.	PASS	Atlas-SNP
WDPCP	51057	hgsc.bcm.edu	37	2	63631515	63631515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	3	146	1	0.0167598	0.00684932	.	.	none	WDPCP,NS,carcinoma,0,1	WDPCP	79	1	NM_015910	exon10	c.G1103A	p.R368H	ACTCTACGGTGAG	.	scavenged	Atlas-SNP
USP25	29761	hgsc.bcm.edu	37	21	17172112	17172112	+	Silent	SNP	C	C	T	rs145029756	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	87	201	0	0.488764	0	C|0.998;T|0.002	0.002	strong	.	USP25	156	.	NM_013396	exon6	c.C592T	p.L198L	TTAGTTCTGAATT	.	PASS	Atlas-SNP
USP6	9098	hgsc.bcm.edu	37	17	5042894	5042894	+	Missense_Mutation	SNP	T	T	C	rs8073787	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	46	35	0	1	0	T|0.322;C|0.678	0.678	strong	USP6_ENST00000250066,NS,carcinoma,-1,2	USP6	213	2	NM_004505	exon14	c.T1423C	p.W475R	TTTGAATGGAGCT	.	PASS	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	37	20	62850358	62850358	+	Silent	SNP	C	C	T	rs41279348	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	40	83	0	0.47619	0	C|0.907;T|0.093	0.093	strong	.	MYT1	152	.	NM_004535	exon12	c.C1941T	p.L647L	GAACCTCAGCACG	.	PASS	Atlas-SNP
KLHL40	131377	hgsc.bcm.edu	37	3	42728144	42728144	+	Missense_Mutation	SNP	A	A	G	rs6805421	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	168	116	0	1	0	A|0.408;G|0.592	0.592	strong	KBTBD5,colon,carcinoma,0,2	.	.	2	NM_152393	exon1	c.A1034G	p.N345S	TCTCCAACCAGGT	.	PASS	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	37	1	154316434	154316434	+	Silent	SNP	C	C	T	rs2274988	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	38	62	0	0.575758	0	C|0.774;T|0.226	0.226	strong	ATP8B2,colon,carcinoma,0,1	ATP8B2	158	1	NM_020452	exon18	c.C1923T	p.Y641Y	GTACTACGAGGAG	.	PASS	Atlas-SNP
LBP	3929	hgsc.bcm.edu	37	20	36982754	36982754	+	Missense_Mutation	SNP	G	G	A	rs36015492	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	47	61	0	0.54023	0	G|0.988;A|0.012	0.012	strong	.	LBP	60	.	NM_004139	exon4	c.G439A	p.E147K	GGCAGCGAGTCCT	.	PASS	Atlas-SNP
TRPV2	51393	hgsc.bcm.edu	37	17	16326005	16326005	+	Silent	SNP	A	A	C	rs1129235	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	45	99	0	0.45	0	A|0.578;C|0.422	0.422	strong	.	TRPV2	74	.	NM_016113	exon4	c.A427C	p.R143R	ATCGACAGGGACT	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	9	65	5	0.101124	0.0769231	.	.	none	MUC2_ENST00000441003,NS,carcinoma,0,6	MUC2	614	6	NM_002457	exon30	c.G4729A	p.G1577S	CCCACCGGCACAC	.	scavenged	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	37	1	220156704	220156704	+	Missense_Mutation	SNP	T	T	C	rs5030752	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	80	191	0	0.454545	0	T|0.929;C|0.071	0.071	strong	EPRS,NS,carcinoma,0,1	EPRS	140	1	NM_004446	exon22	c.A3127G	p.I1043V	CACTTATGTCATG	.	PASS	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	37	1	201047111	201047111	+	Silent	SNP	A	A	G	rs9427714	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	89	234	0	0.445	0	A|0.768;G|0.232	0.232	strong	.	CACNA1S	249	.	NM_000069	exon11	c.T1515C	p.C505C	ACCGCTACACACC	.	PASS	Atlas-SNP
ZWILCH	55055	hgsc.bcm.edu	37	15	66821250	66821250	+	Missense_Mutation	SNP	A	A	G	rs11071896	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	74	202	0	0.418079	0	A|0.818;G|0.182	0.182	strong	.	ZWILCH	46	.	NM_017975	exon11	c.A1030G	p.S344G	GTTCGGAGTGATC	.	PASS	Atlas-SNP
CDKL2	8999	hgsc.bcm.edu	37	4	76551010	76551010	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	4	90	0	0.0366972	0	.	.	none	CDKL2,colon,carcinoma,+1,1	CDKL2	58	1	NM_003948	exon2	c.C163T	p.L55L	CCTTTAGTAACTT	.	scavenged	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	37	22	42276742	42276742	+	Missense_Mutation	SNP	G	G	C	rs2228314	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	98	173	0	0.482759	0	G|0.627;C|0.373	0.373	strong	SREBF2,NS,carcinoma,+1,1	SREBF2	99	1	NM_004599	exon10	c.G1784C	p.G595A	CTGCCGGCAACCT	.	PASS	Atlas-SNP
FOXO3	2309	hgsc.bcm.edu	37	6	108882570	108882570	+	Silent	SNP	C	C	T	rs11757217	bycluster;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	18	31	0	0.305085	0	.	.	weak	FOXO3,brain,glioma,0,4	FOXO3	67	4	NM_001455	exon1	c.C159T	p.A53A	GGCCGCCGACTCC	.	scavenged	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	37	19	36593915	36593915	+	Missense_Mutation	SNP	T	T	G	rs61741470	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	66	121	0	0.47482	0	T|0.959;G|0.041	0.041	strong	.	WDR62	102	.	NM_001083961	exon28	c.T3401G	p.M1134R	AGCTCATGGACCG	.	PASS	Atlas-SNP
CEACAM18	729767	hgsc.bcm.edu	37	19	51986547	51986547	+	Missense_Mutation	SNP	A	A	G	rs10426247	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	49	104	0	0.457944	0	A|0.816;G|0.184	0.184	strong	CEACAM18_ENST00000451626,colon,carcinoma,0,1	CEACAM18	96	1	NM_001080405	exon5	c.A1133G	p.H378R	CCCCCCATGAGTG	.	PASS	Atlas-SNP
NT5C2	22978	hgsc.bcm.edu	37	10	104849468	104849468	+	Silent	SNP	G	G	A	rs3740387	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	283	126	274	1	0.44523	0.00364964	G|0.600;A|0.400	0.400	strong	.	NT5C2	41	.	NM_012229	exon19	c.C1647T	p.D549D	ATCTTCGTCATGG	.	PASS	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	37	22	37462926	37462926	+	Silent	SNP	G	G	A	rs2235321	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	110	133	0	0.611111	0	G|0.622;A|0.377	0.377	strong	TMPRSS6,NS,carcinoma,0,1	TMPRSS6	99	1	NM_153609	exon17	c.C2217T	p.Y739Y	CACCTGGTAGCGA	.	PASS	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	37	15	92638193	92638193	+	Silent	SNP	G	G	A	rs2286355	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	87	197	0	0.437186	0	G|0.684;N|0.000	.	strong	.	SLCO3A1	84	.	NM_013272	exon3	c.G729A	p.A243A	GGATGCGGTCTTC	.	PASS	Atlas-SNP
B3GNTL1	146712	hgsc.bcm.edu	37	17	80923536	80923536	+	Silent	SNP	C	C	T	rs4986144	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	28	60	0	0.571429	0	C|0.739;T|0.261	0.261	strong	B3GNTL1,NS,malignant_melanoma,0,2	B3GNTL1	40	2	NM_001009905	exon7	c.G591A	p.E197E	ACCTCCCTCGTTA	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9048035	9048035	+	Missense_Mutation	SNP	G	G	C	rs10417358	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	72	164	0	0.473684	0	G|0.780;C|0.220	0.220	strong	.	MUC16	4315	.	NM_024690	exon5	c.C33596G	p.A11199G	GAGACAGCTAAAG	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79323952	79323952	+	Missense_Mutation	SNP	C	C	T	rs377620126		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	368	4	341	0	0.0108696	0	.	.	weak	PRUNE2_ENST00000376718,NS,carcinoma,+2,1	PRUNE2	331	1	NM_015225	exon8	c.G3238A	p.D1080N	GGTCGTCGTAACT	.	scavenged	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240256781	240256781	+	Missense_Mutation	SNP	G	G	A	rs142335257	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	22	44	0	0.647059	0	G|0.999;A|0.001	0.001	strong	.	FMN2	451	.	NM_020066	exon1	c.G1372A	p.A458T	AGAACTGCCCTGG	.	PASS	Atlas-SNP
MRPL36	64979	hgsc.bcm.edu	37	5	1799001	1799001	+	Missense_Mutation	SNP	T	T	G	rs114776273	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	281	129	278	0	0.459075	0	T|0.988;G|0.012	0.012	strong	.	MRPL36	5	.	NM_032479	exon2	c.A49C	p.S17R	GACGACTGAGATA	.	PASS	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	37	19	53644417	53644417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	3	66	0	0.0288462	0	.	.	none	ZNF347,NS,carcinoma,0,1	ZNF347	87	1	NM_001172675	exon5	c.G1667A	p.S556N	GTTAGGCTTGAAT	.	scavenged	Atlas-SNP
PAPOLB	56903	hgsc.bcm.edu	37	7	4900095	4900095	+	Silent	SNP	A	A	G	rs1553960	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	238	209	0	0.991667	0	A|0.574;G|0.426	0.426	strong	PAPOLB,NS,carcinoma,0,1	PAPOLB	93	1	NM_020144	exon1	c.T1347C	p.N449N	TTCAGAATTATCT	.	PASS	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	37	4	113539969	113539969	+	Missense_Mutation	SNP	T	T	C	rs7696816	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	36	62	0	0.461538	0	T|0.598;C|0.402	0.402	strong	.	C4orf21	223	.	NM_018392	exon6	c.A1229G	p.N410S	CTTTCATTGAATG	.	PASS	Atlas-SNP
C3orf30	152405	hgsc.bcm.edu	37	3	118865970	118865970	+	Missense_Mutation	SNP	G	G	A	rs4077930	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	30	60	0	0.428571	0	G|0.818;A|0.182	0.182	strong	.	C3orf30	64	.	NM_152539	exon1	c.G934A	p.G312S	GTGTACGGCCAAG	.	PASS	Atlas-SNP
STAT2	6773	hgsc.bcm.edu	37	12	56740682	56740682	+	Missense_Mutation	SNP	C	C	G	rs2066807	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	85	124	0	0.488506	0	C|0.958;G|0.042	0.042	strong	.	STAT2	70	.	NM_005419	exon20	c.G1782C	p.M594I	GCCAGACATGGTC	.	PASS	Atlas-SNP
ANO10	55129	hgsc.bcm.edu	37	3	43602803	43602803	+	Missense_Mutation	SNP	C	C	T	rs3772165	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	188	173	1	1	0.00578035	C|0.413;T|0.587	0.587	strong	.	ANO10	70	.	NM_018075	exon9	c.G1385A	p.R462Q	TTCACCCGCACAC	.	PASS	Atlas-SNP
BNIPL	149428	hgsc.bcm.edu	37	1	151015868	151015868	+	Missense_Mutation	SNP	G	G	A	rs12068365	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	354	182	320	0	0.514124	0	G|0.904;A|0.096	0.096	strong	.	BNIPL	45	.	NM_138278	exon6	c.G677A	p.S226N	CCAGAAGCAGCAT	.	PASS	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	37	22	36684980	36684980	+	Silent	SNP	G	G	A	rs11549907	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	35	66	0	0.432099	0	G|0.970;A|0.030	0.030	strong	.	MYH9	225	.	NM_002473	exon33	c.C4563T	p.H1521H	CAGCTCGTGGACC	.	PASS	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	37	7	76140315	76140315	+	Missense_Mutation	SNP	G	G	A	rs144609046	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	535	226	649	1	0.42243	0.00154083	G|0.999;A|0.001	0.001	strong	.	UPK3B	15	.	NM_030570	exon1	c.G346A	p.D116N	GTCTTCGATGGGC	.	PASS	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	37	19	55697279	55697279	+	Missense_Mutation	SNP	C	C	T	rs61734259	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	71	111	0	0.529851	0	C|0.912;T|0.088	0.088	strong	.	PTPRH	139	.	NM_002842	exon17	c.G2852A	p.G951D	TCCTCACCTACCA	.	PASS	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42781276	42781276	+	Silent	SNP	G	G	T	rs62246603	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	77	157	0	0.435028	0	G|0.778;T|0.222	0.222	strong	.	CCDC13	71	.	NM_144719	exon9	c.C1014A	p.L338L	TCTCTGGAGGACA	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364522	5364522	+	Missense_Mutation	SNP	G	G	T	rs57273781	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	29	54	0	0.426471	0	G|0.889;T|0.111	0.111	strong	OR51B5,NS,malignant_melanoma,+1,2	OR51B5	60	2	NM_001005567	exon5	c.C233A	p.T78K	AGCACCGTGGGCA	.	PASS	Atlas-SNP
DNMBP	23268	hgsc.bcm.edu	37	10	101657880	101657880	+	Silent	SNP	G	G	A	rs7919323	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	142	148	0	0.972603	0	G|0.689;A|0.311	0.311	strong	.	DNMBP	173	.	NM_015221	exon9	c.C2883T	p.N961N	GTTAACGTTGATT	.	PASS	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	37	17	10261086	10261086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	62	137	0	0.433566	0	.	.	none	.	MYH13	533	.	NM_003802	exon8	c.C704T	p.A235V	GTCTTGGCATTTC	.	PASS	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	37	2	10101468	10101468	+	Missense_Mutation	SNP	A	A	G	rs16867256	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	48	71	0	0.436364	0	A|0.801;G|0.199	0.199	strong	.	GRHL1	95	.	NM_198182	exon4	c.A572G	p.N191S	ATCTCAATACTGA	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76528790	76528790	+	Missense_Mutation	SNP	A	A	G	rs11651537	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	71	0	1	0	A|0.513;G|0.487	0.487	strong	.	DNAH17	347	.	NM_173628	exon20	c.T2888C	p.I963T	ATCTCTATGAGGT	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370629	240370629	+	Silent	SNP	C	C	G	rs10926166	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	44	97	0	0.44	0	C|0.679;G|0.321	0.321	strong	.	FMN2	451	.	NM_020066	exon5	c.C2517G	p.T839T	TCAAACCAGCCAC	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306642	1306642	+	Missense_Mutation	SNP	C	C	T	rs61739908	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	87	178	0	0.441624	0	C|0.872;T|0.128	0.128	strong	.	TPSD1	47	.	NM_012217	exon2	c.C208T	p.L70F	GGCTCCCTCATCC	.	PASS	Atlas-SNP
ZNF669	79862	hgsc.bcm.edu	37	1	247267274	247267274	+	Missense_Mutation	SNP	C	C	A	rs4925692	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	27	36	0	0.490909	0	C|0.780;A|0.220	0.220	strong	.	ZNF669	46	.	NM_024804	exon1	c.G228T	p.E76D	ACAGGGCTCCGGC	.	PASS	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	37	4	91230579	91230579	+	Missense_Mutation	SNP	G	G	A	rs12647859	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	61	146	0	0.438849	0	G|0.822;A|0.178	0.178	strong	.	.	.	.	NM_001145065	exon2	c.G1144A	p.G382S	CAAAATGGTGAAA	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4934777	4934777	+	Silent	SNP	C	C	T	rs61744951	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	82	150	0	0.509317	0	C|0.918;T|0.082	0.082	strong	.	PPL	168	.	NM_002705	exon22	c.G3879A	p.Q1293Q	GATCTCCTGGACC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1075850	1075850	+	Silent	SNP	G	G	A	rs11825969	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	56	74	0	0.5	0	G|0.844;A|0.156	0.156	strong	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	614	2	NM_002457	exon2	c.G276A	p.E92E	GGTGGAGTCCATC	.	PASS	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	37	5	149008467	149008467	+	Missense_Mutation	SNP	C	C	A	rs3733662	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	37	65	0	0.406593	0	C|0.839;A|0.161	0.161	strong	.	ARHGEF37	45	.	NM_001001669	exon12	c.C1756A	p.P586T	AAAGACCCCCGAT	.	PASS	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	37	19	19654117	19654117	+	Silent	SNP	G	G	C	rs7252453	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	88	153	0	0.533333	0	G|0.754;C|0.246	0.246	strong	.	CILP2	84	.	NM_153221	exon7	c.G1038C	p.L346L	GGAGCTGCGGGGA	.	PASS	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	37	4	169146815	169146815	+	Missense_Mutation	SNP	C	C	T	rs146255632	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	24	74	0	0.40678	0	C|0.999;T|0.001	0.001	strong	.	DDX60	304	.	NM_017631	exon34	c.G4546A	p.D1516N	GGAGATCATCAAG	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64612845	64612845	+	Silent	SNP	C	C	T	rs11629287	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	170	206	2	0.994152	0.00970874	C|0.567;T|0.433	0.433	strong	SYNE2,NS,carcinoma,0,1	SYNE2	577	1	NM_182914	exon84	c.C15543T	p.I5181I	ACAGATCTTGAAC	.	PASS	Atlas-SNP
GSN	2934	hgsc.bcm.edu	37	9	124088908	124088908	+	Missense_Mutation	SNP	C	C	G	rs77681311	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	41	76	0	0.594203	0	C|0.969;G|0.031	0.031	strong	.	GSN	81	.	NM_000177	exon12	c.C1688G	p.T563S	CCAGCACCCGCCT	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90501609	90501609	+	Missense_Mutation	SNP	C	C	T	rs34791830	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	67	97	0	0.656863	0	C|0.916;T|0.084	0.084	strong	.	.	.	.	NM_178828	exon4	c.C2207T	p.A736V	AGGAGGCAGAAGG	.	PASS	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	37	1	173516871	173516871	+	Missense_Mutation	SNP	G	G	C	rs16846206	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	60	142	0	0.535714	0	G|0.763;C|0.237	0.237	strong	.	.	.	.	NM_178527	exon13	c.C1514G	p.A505G	ATTAAAGCTTCAT	.	PASS	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111918215	111918215	+	Missense_Mutation	SNP	C	C	T	rs28516377	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	37	52	0	0.506849	0	C|0.725;T|0.275	0.275	strong	SLC9A10,NS,carcinoma,0,1	.	.	1	NM_183061	exon20	c.G2476A	p.G826S	TTAAGCCAAAAGC	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47773177	47773177	+	Missense_Mutation	SNP	C	C	T	rs2249060	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	26	80	0	0.419355	0	C|0.866;T|0.134	0.134	strong	.	PCNT	283	.	NM_006031	exon10	c.C1616T	p.T539I	ACCTAACCCTGTT	.	PASS	Atlas-SNP
EFS	10278	hgsc.bcm.edu	37	14	23830042	23830042	+	Missense_Mutation	SNP	T	T	C	rs2231798	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	60	0	1	0	T|0.564;C|0.436	0.436	strong	.	EFS	37	.	NM_005864	exon2	c.A19G	p.T7A	GCTGGGTCTGGTT	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	37	1	62579823	62579823	+	Silent	SNP	G	G	A	rs1475563	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	251	123	257	1	0.49004	0.00389105	G|0.370;N|0.000	.	strong	.	INADL	179	.	NM_176877	exon35	c.G4560A	p.E1520E	AGATGAGGCACAC	.	PASS	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	37	4	68562365	68562365	+	Silent	SNP	A	A	G	rs17572160	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	368	177	312	0	0.480978	0	A|0.778;G|0.222	0.222	strong	.	UBA6	98	.	NM_018227	exon2	c.T132C	p.Y44Y	TTACCTATACAAT	.	PASS	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55755491	55755491	+	Missense_Mutation	SNP	C	C	T	rs2135720	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	42	99	0	0.415842	0	C|0.754;T|0.246	0.246	strong	PCDH15_ENST00000417177,NS,carcinoma,-1,4	PCDH15	1715	4	NM_001142763	exon22	c.G2801A	p.R934Q	TATATTCGTTTAC	.	PASS	Atlas-SNP
NANS	54187	hgsc.bcm.edu	37	9	100823135	100823135	+	Missense_Mutation	SNP	G	G	C	rs1058446	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	69	125	0	0.530769	0	G|0.775;C|0.225	0.225	strong	.	NANS	24	.	NM_018946	exon2	c.G204C	p.E68D	CTTGGAGAGGCCA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417102	105417102	+	Silent	SNP	T	T	C	rs2248966	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	234	233	1	0.995745	0.00429185	T|0.517;C|0.483	0.483	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A4686G	p.P1562P	GCCCTCTGGGAGT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417285	105417285	+	Silent	SNP	C	C	T	rs76453246	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	25	256	0	0.362319	0	C|0.948;T|0.052	0.052	strong	AHNAK2_ENST00000333244,colon,carcinoma,-1,1	AHNAK2	719	1	NM_138420	exon7	c.G4503A	p.P1501P	GAACGACGGCATC	.	scavenged	Atlas-SNP
SNAP47	116841	hgsc.bcm.edu	37	1	227935444	227935444	+	Missense_Mutation	SNP	A	A	G	rs2236359	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	129	276	0	0.451049	0	A|0.578;G|0.422	0.422	strong	.	SNAP47	42	.	NM_053052	exon2	c.A142G	p.R48G	ATGAGCAGGGATG	.	PASS	Atlas-SNP
SH3GLB2	56904	hgsc.bcm.edu	37	9	131771505	131771505	+	Silent	SNP	C	C	T	rs1129098	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	76	97	0	0.95	0	C|0.726;T|0.274	0.274	strong	.	SH3GLB2	32	.	NM_020145	exon10	c.G960A	p.P320P	CTCCCCCGGAGGG	.	PASS	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	37	X	47041666	47041666	+	Missense_Mutation	SNP	G	G	C	rs79693964	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	115	94	0	1	0	G|0.984;C|0.016	0.016	strong	.	RBM10	117	.	NM_001204468	exon17	c.G2086C	p.A696P	ACAGGGGCACCCT	.	PASS	Atlas-SNP
NUP107	57122	hgsc.bcm.edu	37	12	69090684	69090684	+	Silent	SNP	A	A	G	rs35054844	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	45	65	0	0.548781	0	A|0.975;G|0.025	0.025	strong	NUP107,NS,carcinoma,+2,1	NUP107	88	1	NM_020401	exon6	c.A534G	p.E178E	GTATGAAAACATC	.	PASS	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	37	12	119866533	119866533	+	Missense_Mutation	SNP	A	A	G	rs1064319	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	44	81	0	0.483516	0	A|0.720;G|0.280	0.280	strong	CCDC60,NS,carcinoma,0,1	CCDC60	84	1	NM_178499	exon2	c.A136G	p.I46V	AAGGAAATAATAA	.	PASS	Atlas-SNP
TRH	7200	hgsc.bcm.edu	37	3	129694681	129694681	+	Missense_Mutation	SNP	C	C	G	rs5658	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	86	170	0	0.518072	0	C|0.839;G|0.161	0.161	strong	.	TRH	30	.	NM_007117	exon2	c.C22G	p.L8V	TTGCTGCTCGCTC	.	PASS	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	37	19	3754020	3754020	+	Silent	SNP	G	G	C	rs61731066	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	43	70	0	0.544304	0	G|0.968;C|0.032	0.032	strong	.	APBA3	28	.	NM_004886	exon5	c.C846G	p.S282S	TACCTGGGAGTCC	.	PASS	Atlas-SNP
CXCL16	58191	hgsc.bcm.edu	37	17	4638563	4638563	+	Missense_Mutation	SNP	G	G	A	rs2277680	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	96	199	0	0.518919	0	G|0.576;A|0.424	0.424	strong	.	CXCL16	30	.	NM_022059	exon4	c.C599T	p.A200V	GGCCCAGCTGCCA	.	PASS	Atlas-SNP
C19orf77	284422	hgsc.bcm.edu	37	19	3474941	3474941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	77	143	0	0.534722	0	.	.	none	.	C19orf77	6	.	NM_001136503	exon4	c.A293C	p.K98T	TTCTCCTTCTTCC	.	PASS	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	37	9	135771795	135771795	+	Missense_Mutation	SNP	C	C	T	rs118203753		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	230	3	198	0	0.0130435	0	.	.	weak	TSC1,right_lower_lobe,carcinoma,0,1	TSC1	167	1	NM_000368	exon23	c.G3322A	p.G1108S	TCATGCCGTCCTC	.	scavenged	Atlas-SNP
PLA2G4F	255189	hgsc.bcm.edu	37	15	42439444	42439444	+	Missense_Mutation	SNP	C	C	T	rs111633028	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	11	27	0	0.478261	0	C|0.956;T|0.044	0.044	strong	.	PLA2G4F	75	.	NM_213600	exon13	c.G1297A	p.A433T	ACAAAGCTCCCAT	.	PASS	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	37	9	130489743	130489743	+	Missense_Mutation	SNP	A	A	G	rs13298768	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	26	25	0	0.5	0	A|0.638;G|0.362	0.362	strong	.	TTC16	55	.	NM_144965	exon12	c.A1763G	p.E588G	AAAAAGAGGTAAG	.	PASS	Atlas-SNP
COG6	57511	hgsc.bcm.edu	37	13	40229891	40229891	+	Missense_Mutation	SNP	G	G	A	rs3812882	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	45	40	0	0.608108	0	G|0.525;A|0.475	0.475	strong	.	COG6	49	.	NM_001145079	exon1	c.G28A	p.A10T	GTGGTCGCAGTGT	.	PASS	Atlas-SNP
ACOX2	8309	hgsc.bcm.edu	37	3	58494661	58494661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	49	91	0	0.475728	0	.	.	none	.	ACOX2	53	.	NM_003500	exon14	c.C1942T	p.R648C	ACAGGCGTTCGTA	.	PASS	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	37	19	44223145	44223145	+	Silent	SNP	C	C	T	rs34439296	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	33	61	0	0.6	0	C|0.927;T|0.073	0.073	strong	IRGC,NS,carcinoma,+1,1	IRGC	67	1	NM_019612	exon2	c.C435T	p.C145C	CCGCTGCGGGGCC	.	PASS	Atlas-SNP
B4GALNT4	338707	hgsc.bcm.edu	37	11	372157	372157	+	Missense_Mutation	SNP	C	C	T	rs34063493	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	93	95	0	0.989362	0	A|0.000;C|0.629;G|0.000;T|0.371	0.371	strong	.	B4GALNT4	83	.	NM_178537	exon2	c.C200T	p.A67V	ACGCTGCGCCATC	.	PASS	Atlas-SNP
BRD2	6046	hgsc.bcm.edu	37	6	32942302	32942302	+	Silent	SNP	G	G	A	rs516535	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	50	108	0	0.409836	0	G|0.363;A|0.637	0.637	strong	.	BRD2	70	.	NM_005104	exon3	c.G93A	p.K31K	AGGGAAGAGGATT	.	PASS	Atlas-SNP
ASB2	51676	hgsc.bcm.edu	37	14	94417531	94417531	+	Missense_Mutation	SNP	T	T	C	rs11555542	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	32	47	0	0.463768	0	T|0.964;C|0.036	0.036	strong	.	ASB2	71	.	NM_001202429	exon6	c.A694G	p.N232D	GGTGGTTGGTGTC	.	PASS	Atlas-SNP
THEMIS2	9473	hgsc.bcm.edu	37	1	28209362	28209362	+	Silent	SNP	T	T	C	rs3766399	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	64	144	0	0.453901	0	T|0.468;C|0.532	0.532	strong	.	.	.	.	NM_001105556	exon4	c.T1527C	p.V509V	GACTGTTGTGAAG	.	PASS	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	37	21	47969793	47969793	+	Silent	SNP	C	C	T	rs17302700	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	20	55	0	0.47619	0	C|0.949;T|0.051	0.051	strong	.	DIP2A	332	.	NM_206889	exon22	c.C2632T	p.L878L	CGTGTGCTGCAGG	.	PASS	Atlas-SNP
IL7R	3575	hgsc.bcm.edu	37	5	35876449	35876449	+	Missense_Mutation	SNP	C	C	T	rs2229232	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	25	62	0	0.609756	0	C|0.989;T|0.011	0.011	strong	IL7R,NS,carcinoma,-1,1	IL7R	200	1	NM_002185	exon8	c.C1241T	p.T414M	ACAGCACGCTGCC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280170	152280170	+	Missense_Mutation	SNP	C	C	G	rs76133835	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	344	137	370	1	0.398256	0.0027027	C|0.500;G|0.500	0.500	weak	.	FLG	900	.	NM_002016	exon3	c.G7192C	p.E2398Q	TGGACTCTTGGTG	.	PASS	Atlas-SNP
PGR	5241	hgsc.bcm.edu	37	11	100998623	100998623	+	Silent	SNP	G	G	A	rs1379130	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	28	74	0	0.4375	0	G|0.842;A|0.158	0.158	strong	.	PGR	115	.	NM_000926	exon1	c.C1179T	p.G393G	CTCCGCGCCTTCC	.	PASS	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	37	14	59112677	59112677	+	Missense_Mutation	SNP	G	G	A	rs34015825	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	7	24	0	0.466667	0	G|0.957;A|0.043	0.043	strong	.	DACT1	119	.	NM_016651	exon4	c.G1336A	p.D446N	GCCTCCGACCTTC	.	PASS	Atlas-SNP
CDT1	81620	hgsc.bcm.edu	37	16	88872229	88872229	+	Missense_Mutation	SNP	A	A	G	rs480727	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	70	87	0	0.972222	0	A|0.452;G|0.548	0.548	strong	.	CDT1	30	.	NM_030928	exon5	c.A784G	p.T262A	GATGGCACCAGGA	.	PASS	Atlas-SNP
ATP11A	23250	hgsc.bcm.edu	37	13	113536132	113536132	+	Silent	SNP	T	T	C	rs1290177	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	48	118	0	0.417391	0	C|0.553;N|0.000	0.553	strong	.	ATP11A	225	.	NM_032189	exon29	c.T3330C	p.N1110N	GCAGAATGGGTGC	.	PASS	Atlas-SNP
NID1	4811	hgsc.bcm.edu	37	1	236175327	236175327	+	Missense_Mutation	SNP	C	C	A	rs3738531	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	32	53	0	0.438356	0	C|0.874;A|0.126	0.126	strong	.	NID1	196	.	NM_002508	exon12	c.G2421T	p.Q807H	GCTTGGCTGGCAT	.	PASS	Atlas-SNP
NUF2	83540	hgsc.bcm.edu	37	1	163297322	163297322	+	Silent	SNP	A	A	C	rs16852612	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	84	134	0	0.474576	0	A|0.888;C|0.112	0.112	strong	.	NUF2	138	.	NM_145697	exon3	c.A168C	p.V56V	AATAGTATATGGA	.	PASS	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	37	1	209811886	209811886	+	Silent	SNP	T	T	G	rs2076356	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	134	128	1	1	0.0078125	T|0.476;G|0.524	0.524	strong	LAMB3,NS,carcinoma,0,1	LAMB3	136	1	NM_000228	exon4	c.A291C	p.S97S	ATTCTGTGACTGC	.	PASS	Atlas-SNP
KIRREL3	84623	hgsc.bcm.edu	37	11	126294661	126294661	+	Silent	SNP	G	G	A	rs34844660	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	51	112	0	0.459459	0	G|0.992;A|0.008	0.008	strong	.	KIRREL3	183	.	NM_032531	exon17	c.C2151T	p.S717S	GCTGTCGCTGAGG	.	PASS	Atlas-SNP
METTL11B	149281	hgsc.bcm.edu	37	1	170135760	170135760	+	Missense_Mutation	SNP	T	T	C	rs6427235	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	72	150	0	0.439024	0	T|0.719;C|0.281	0.281	strong	.	METTL11B	18	.	NM_001136107	exon3	c.T448C	p.S150P	ATGGAATCCTTTC	.	PASS	Atlas-SNP
ANK1	286	hgsc.bcm.edu	37	8	41563685	41563685	+	Silent	SNP	G	G	A	rs1137177	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	31	55	0	0.596154	0	G|0.832;N|0.000	.	strong	.	ANK1	497	.	NM_001142446	exon18	c.C2172T	p.G724G	CATGACGCCGTGT	.	PASS	Atlas-SNP
OR2F2	135948	hgsc.bcm.edu	37	7	143632984	143632984	+	Missense_Mutation	SNP	G	G	A	rs61740239	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	257	123	221	0	0.478599	0	G|0.965;A|0.035	0.035	strong	.	OR2F2	63	.	NM_001004685	exon1	c.G659A	p.R220Q	ACATCCGGATCAT	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9060125	9060125	+	Silent	SNP	G	G	A	rs12972088	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	79	126	0	0.50641	0	G|0.760;A|0.240	0.240	strong	.	MUC16	4315	.	NM_024690	exon3	c.C27321T	p.H9107H	AGTTGAGTGGGTC	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124196094	124196094	+	Silent	SNP	A	A	T	rs2289843	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	56	107	0	0.4375	0	A|0.862;T|0.138	0.138	strong	KALRN_ENST00000360013,NS,carcinoma,0,2	KALRN	556	2	NM_003947	exon27	c.A4098T	p.A1366A	TTAGGCAGACAAA	.	PASS	Atlas-SNP
KCNK6	9424	hgsc.bcm.edu	37	19	38817486	38817486	+	Silent	SNP	T	T	C	rs3745951	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	27	38	0	0.457627	0	T|0.836;C|0.164	0.164	strong	.	KCNK6	37	.	NM_004823	exon2	c.T576C	p.F192F	GATCTTTGCCCAC	.	PASS	Atlas-SNP
PPFIA4	8497	hgsc.bcm.edu	37	1	203028371	203028371	+	Missense_Mutation	SNP	G	G	T	rs61732315	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	251	123	225	0	0.49004	0	G|0.878;T|0.122	0.122	strong	.	PPFIA4	139	.	NM_015053	exon7	c.G955T	p.A319S	ACCCAGGCAGAGA	.	PASS	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	37	1	15708557	15708557	+	Silent	SNP	G	G	A	rs35816204	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	318	147	305	1	0.462264	0.00327869	G|0.975;A|0.025	0.025	strong	.	FHAD1	78	.	NM_052929	exon30	c.G3990A	p.S1330S	CCAGTCGCAGGTG	.	PASS	Atlas-SNP
EPB41L4A	64097	hgsc.bcm.edu	37	5	111611076	111611076	+	Silent	SNP	A	A	G	rs12521830	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	144	155	0	0.986301	0	A|0.639;G|0.361	0.361	strong	.	EPB41L4A	130	.	NM_022140	exon4	c.T282C	p.F94F	AATACCAAAATAC	.	PASS	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	37	2	196922836	196922836	+	Missense_Mutation	SNP	T	T	A	rs72917299	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	46	131	0	0.469388	0	T|0.991;A|0.009	0.009	strong	.	DNAH7	512	.	NM_018897	exon2	c.A20T	p.K7I	GCCGATTTATCCT	.	PASS	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	37	11	5068297	5068297	+	Missense_Mutation	SNP	G	G	A	rs58664826	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	365	177	337	1	0.484931	0.00296736	G|0.894;A|0.106	0.106	strong	.	OR52J3	77	.	NM_001001916	exon1	c.G542A	p.C181Y	CCTACTGTGAGCA	.	PASS	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	37	10	102783354	102783354	+	Silent	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	33	48	0	0.55	0	.	.	none	.	PDZD7	101	.	NM_001195263	exon4	c.G381C	p.L127L	CACGCACAGGCCA	.	PASS	Atlas-SNP
YIF1B	90522	hgsc.bcm.edu	37	19	38798086	38798086	+	Silent	SNP	T	T	C	rs3178327	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	56	75	0	0.56	0	T|0.699;C|0.301	0.301	strong	YIF1B_ENST00000339413,NS,carcinoma,-2,3	YIF1B	47	3	NM_001039672	exon7	c.A771G	p.V257V	GATGGCTACGCAG	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12410362	12410362	+	Silent	SNP	C	C	T	rs1072557	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	90	189	0	0.520231	0	T|0.098;G|0.321;C|0.497;A|0.083	0.098	strong	VWDE_ENST00000275358,colon,carcinoma,0,1	VWDE	123	1	NM_001135924	exon11	c.G1716A	p.P572P	ATTTTCCGGATTT	.	PASS	Atlas-SNP
POLR1D	51082	hgsc.bcm.edu	37	13	28239970	28239970	+	Silent	SNP	G	G	A	rs14105	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	54	93	1	0.514286	0.0107527	G|0.646;A|0.354	0.354	strong	POLR1D,NS,carcinoma,0,1	POLR1D	31	1	NM_152705	exon3	c.G249A	p.P83P	AAACCCGAAGAAA	.	scavenged	Atlas-SNP
ZNF492	57615	hgsc.bcm.edu	37	19	22847084	22847084	+	Missense_Mutation	SNP	G	G	T	rs71236901	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	410	169	398	1	0.412195	0.00251256	G|0.500;T|0.500	0.500	strong	ZNF492_ENST00000456783,NS,carcinoma,0,1	ZNF492	129	1	NM_020855	exon4	c.G613T	p.A205S	GGAAAAGCCTTTA	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276871	152276871	+	Silent	SNP	A	A	G	rs3126066	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	306	157	302	0	0.513072	0	A|0.703;G|0.297	0.297	strong	.	FLG	900	.	NM_002016	exon3	c.T10491C	p.D3497D	GGAGCCATCTCCT	.	PASS	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	37	14	59789892	59789892	+	Silent	SNP	G	G	T	rs17096074	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	74	119	0	0.556391	0	G|0.945;T|0.055	0.055	strong	DAAM1,NS,carcinoma,+2,1	DAAM1	95	1	NM_001270520	exon6	c.G723T	p.L241L	GGTTCTGCAGGCC	.	PASS	Atlas-SNP
CD69	969	hgsc.bcm.edu	37	12	9906179	9906179	+	Silent	SNP	G	G	A	rs11052883	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	31	75	0	0.430556	0	G|0.970;A|0.030	0.030	strong	CD69,NS,carcinoma,-1,1	CD69	23	1	NM_001781	exon5	c.C498T	p.N166N	TGTAACGTTGAAC	.	PASS	Atlas-SNP
HSPA1L	3305	hgsc.bcm.edu	37	6	31778529	31778529	+	Silent	SNP	C	C	T	rs2075799	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	152	119	0	1	0	C|0.854;T|0.146	0.146	strong	HSPA1L,caecum,carcinoma,0,1	HSPA1L	185	1	NM_005527	exon2	c.G1221A	p.T407T	CCCAGCCGTCTCC	.	PASS	Atlas-SNP
MDM1	56890	hgsc.bcm.edu	37	12	68709892	68709892	+	Missense_Mutation	SNP	C	C	T	rs17224810	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	120	134	1	0.983607	0.00746269	C|0.857;T|0.143	0.143	strong	MDM1,caecum,carcinoma,+1,1	MDM1	74	1	NM_017440	exon8	c.G1147A	p.V383I	TACTAACGGTTCC	.	PASS	Atlas-SNP
CD81	975	hgsc.bcm.edu	37	11	2417935	2417935	+	Silent	SNP	T	T	C	rs2229751	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	30	85	0	0.441176	0	T|0.890;C|0.110	0.110	strong	.	CD81	11	.	NM_004356	exon7	c.T639C	p.A213A	GGTCGCTGTGATC	.	PASS	Atlas-SNP
ARSG	22901	hgsc.bcm.edu	37	17	66364691	66364691	+	Missense_Mutation	SNP	C	C	G	rs1558876	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	42	58	0	0.512195	0	C|0.673;G|0.327	0.327	strong	.	ARSG	55	.	NM_001267727	exon7	c.C707G	p.T236S	TCAGCACCAGCGG	.	PASS	Atlas-SNP
CLCA4	22802	hgsc.bcm.edu	37	1	87045902	87045902	+	Silent	SNP	A	A	T	rs1932809	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	79	1	0	0.963415	0	A|0.601;T|0.399	0.399	strong	.	CLCA4	131	.	NM_012128	exon14	c.A2634T	p.T878T	TCCTACACCTACT	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7818190	7818190	+	Silent	SNP	C	C	T	rs73406607	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	60	33	0	1	0	C|0.738;T|0.262	0.262	strong	OR5P2,brain,glioma,0,2	OR5P2	68	2	NM_153444	exon1	c.G300A	p.A100A	GAAAGCCGCTGAA	.	PASS	Atlas-SNP
OR5I1	10798	hgsc.bcm.edu	37	11	55703728	55703728	+	Missense_Mutation	SNP	A	A	G	rs4367963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	66	99	1	0.478261	0.010101	A|0.901;G|0.099	0.099	strong	OR5I1,caecum,carcinoma,+1,2	OR5I1	110	2	NM_006637	exon1	c.T149C	p.L50S	CTGATCAACAGCA	.	scavenged	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	37	1	204587047	204587047	+	Missense_Mutation	SNP	G	G	A	rs11588857	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	57	87	0	0.491379	0	G|0.827;A|0.173	0.173	strong	.	LRRN2	81	.	NM_006338	exon3	c.C2074T	p.P692S	TCCCTGGATTCCA	.	PASS	Atlas-SNP
IGFBP7	3490	hgsc.bcm.edu	37	4	57907014	57907014	+	Silent	SNP	C	C	T	rs35855328	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	31	64	0	0.584906	0	C|0.992;T|0.008	0.008	strong	IGFBP7,NS,malignant_melanoma,-2,1	IGFBP7	22	1	NM_001553	exon2	c.G561A	p.P187P	AGGTGTCGGGATT	.	PASS	Atlas-SNP
TRAF3	7187	hgsc.bcm.edu	37	14	103342049	103342049	+	Missense_Mutation	SNP	T	T	C	rs1131877	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	21	61	0	0.368421	0	T|0.550;C|0.450	0.450	strong	.	TRAF3	60	.	NM_145726	exon5	c.T386C	p.M129T	AGTTAATGCTGGG	.	PASS	Atlas-SNP
PAPL	0	hgsc.bcm.edu	37	19	39592138	39592138	+	Silent	SNP	C	C	T	rs1313617	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	32	40	0	0.571429	0	C|0.765;T|0.235	0.235	strong	.	.	.	.	NM_001004318	exon11	c.C1074T	p.T358T	CTACACCAACCCG	.	PASS	Atlas-SNP
FGB	2244	hgsc.bcm.edu	37	4	155488821	155488821	+	Silent	SNP	C	C	T	rs6056	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	65	167	0	0.347594	0	C|0.841;T|0.159	0.159	strong	.	FGB	71	.	NM_005141	exon4	c.C567T	p.S189S	GAATAGCAATATC	.	PASS	Atlas-SNP
ARIH2	10425	hgsc.bcm.edu	37	3	48965078	48965078	+	Missense_Mutation	SNP	A	A	C	rs34221642	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	41	104	0	0.376147	0	A|0.970;C|0.030	0.030	strong	.	ARIH2	32	.	NM_006321	exon3	c.A87C	p.E29D	AGAAGAAGACGAC	.	PASS	Atlas-SNP
EMC1	23065	hgsc.bcm.edu	37	1	19565344	19565344	+	Missense_Mutation	SNP	C	C	G	rs709683	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	29	104	0	0.42029	0	C|0.506;G|0.494	0.494	strong	.	.	.	.	NM_001271428	exon10	c.G1034C	p.S345T	CTGCTACTTTTCT	.	PASS	Atlas-SNP
GRIN1	2902	hgsc.bcm.edu	37	9	140051238	140051238	+	Silent	SNP	A	A	G	rs6293	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	38	104	1	0.408602	0.00961538	A|0.831;G|0.169	0.169	strong	GRIN1,NS,carcinoma,0,2	GRIN1	51	2	NM_001185091	exon6	c.A852G	p.P284P	CGCCCCAGACGGT	.	scavenged	Atlas-SNP
GALNT18	374378	hgsc.bcm.edu	37	11	11292700	11292700	+	Silent	SNP	G	G	C	rs10831567	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	24	56	0	0.521739	0	G|0.596;C|0.404	0.404	strong	GALNTL4,NS,carcinoma,0,1	.	.	1	NM_198516	exon11	c.C1815G	p.L605L	GGACGCGAGGCTC	.	PASS	Atlas-SNP
PDAP1	11333	hgsc.bcm.edu	37	7	98997955	98997955	+	Silent	SNP	G	G	A	rs148987199	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	369	175	394	1	0.474255	0.00253807	G|1.000;A|0.000	0.000	strong	.	PDAP1	17	.	NM_014891	exon4	c.C306T	p.D102D	TGGCCCGTCCAGA	.	PASS	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	37	18	29055635	29055635	+	Silent	SNP	C	C	T	rs117661169	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	37	68	0	0.474359	0	C|0.976;T|0.024	0.024	strong	.	DSG3	172	.	NM_001944	exon16	c.C2412T	p.D804D	GGAAGACGATGGC	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187517758	187517758	+	Silent	SNP	G	G	A	rs3822060	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	55	96	0	0.466102	0	G|0.938;A|0.062	0.062	strong	.	FAT1	500	.	NM_005245	exon25	c.C12936T	p.P4312P	TGAAGGGGGTGGG	.	PASS	Atlas-SNP
TGS1	96764	hgsc.bcm.edu	37	8	56711713	56711713	+	Missense_Mutation	SNP	A	A	G	rs10109493	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	18	57	0	0.418605	0	A|0.876;G|0.124	0.124	strong	.	TGS1	66	.	NM_024831	exon8	c.A1783G	p.T595A	CTAGCAACTGTTC	.	PASS	Atlas-SNP
GJD4	219770	hgsc.bcm.edu	37	10	35896700	35896700	+	Missense_Mutation	SNP	C	C	T	rs76906304	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	30	58	0	0.46875	0	C|0.989;T|0.011	0.011	strong	GJD4,NS,carcinoma,0,1	GJD4	38	1	NM_153368	exon2	c.C259T	p.L87F	GTCCTCCTCCCCT	.	PASS	Atlas-SNP
GNB3	2784	hgsc.bcm.edu	37	12	6954875	6954875	+	Silent	SNP	C	C	T	rs5443	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	84	142	0	0.506024	0	C|0.542;T|0.458	0.458	strong	GNB3,bladder,carcinoma,+1,2	GNB3	36	2	NM_002075	exon10	c.C825T	p.S275S	CACGTCCGTGGCC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9003618	9003618	+	Missense_Mutation	SNP	C	C	T	rs11085776	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	156	158	1	1	0.00632911	C|0.352;T|0.648	0.648	strong	.	MUC16	4315	.	NM_024690	exon49	c.G40022A	p.R13341H	GGGCGACGCATGT	.	PASS	Atlas-SNP
PIP5K1B	8395	hgsc.bcm.edu	37	9	71549847	71549847	+	Missense_Mutation	SNP	G	G	A	rs55897616	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	48	105	0	0.45283	0	G|0.955;A|0.045	0.045	strong	.	PIP5K1B	40	.	NM_003558	exon13	c.G1243A	p.A415T	TCAATCGCCGCCC	.	PASS	Atlas-SNP
RRN3	54700	hgsc.bcm.edu	37	16	15166809	15166809	+	Silent	SNP	A	A	G	rs72774849	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	51	102	0	0.485714	0	A|0.987;G|0.013	0.013	strong	.	RRN3	36	.	NM_018427	exon12	c.T1126C	p.L376L	TCACCAATTTGAA	.	PASS	Atlas-SNP
CCDC85A	114800	hgsc.bcm.edu	37	2	56420296	56420296	+	Missense_Mutation	SNP	C	C	T	rs75743618	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	76	145	0	0.481013	0	C|0.918;T|0.082	0.082	strong	.	CCDC85A	70	.	NM_001080433	exon2	c.C961T	p.R321W	AAGCACCGGTCAG	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99160152	99160152	+	Silent	SNP	A	A	G	rs1048442	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	43	93	0	0.5375	0	A|0.622;G|0.378	0.378	strong	.	RRP12	97	.	NM_001145114	exon2	c.T279C	p.G93G	GAAGGTACCCGAG	.	PASS	Atlas-SNP
INTS10	55174	hgsc.bcm.edu	37	8	19677915	19677915	+	Silent	SNP	G	G	A	rs7822495	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	51	114	0	0.51	0	G|0.763;A|0.237	0.237	strong	.	INTS10	46	.	NM_018142	exon4	c.G327A	p.R109R	TGGTCGGGTCCAG	.	PASS	Atlas-SNP
BRAF	673	hgsc.bcm.edu	37	7	140449150	140449150	+	Silent	SNP	T	T	C	rs9648696	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	65	167	0	0.471014	0	T|0.696;C|0.304	0.304	strong	.	BRAF	36346	.	NM_004333	exon16	c.A1929G	p.G643G	AACAATTCCAAAT	.	PASS	Atlas-SNP
ALS2CR11	151254	hgsc.bcm.edu	37	2	202436684	202436684	+	Silent	SNP	T	T	A	rs55872838	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	88	160	0	0.505747	0	T|0.948;A|0.052	0.052	strong	.	ALS2CR11	194	.	NM_001168217	exon8	c.A813T	p.P271P	TCTTTCTGGAGGT	.	PASS	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	37	4	100518247	100518247	+	Silent	SNP	C	C	A	rs17029213	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	20	26	0	0.416667	0	C|0.933;A|0.067	0.067	strong	.	MTTP	127	.	NM_000253	exon9	c.C933A	p.T311T	GTCCACCAGGAAA	.	PASS	Atlas-SNP
EPHA1	2041	hgsc.bcm.edu	37	7	143092269	143092269	+	Missense_Mutation	SNP	G	G	A	rs34372369	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	28	59	0	0.405797	0	G|0.961;A|0.039	0.039	strong	.	EPHA1	193	.	NM_005232	exon13	c.C2090T	p.P697L	ATGATCGGCTTTC	.	PASS	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	37	17	3845927	3845927	+	Silent	SNP	A	A	G	rs17846889	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	34	34	0	1	0	G|0.461;C|0.000;A|0.539	0.461	strong	.	ATP2A3	148	.	NM_174956	exon12	c.T1518C	p.T506T	CTGGCCAGTAGGG	.	PASS	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	37	3	38768334	38768334	+	Silent	SNP	T	T	C	rs7374804	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	79	139	1	0.509677	0.00719424	T|0.913;C|0.087	0.087	strong	SCN10A,NS,carcinoma,0,1	SCN10A	359	1	NM_006514	exon16	c.A2850G	p.K950K	TGGGAGTTTCACC	.	scavenged	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79324955	79324955	+	Missense_Mutation	SNP	C	C	T	rs11145017	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	72	147	0	0.439024	0	C|0.743;N|0.000	.	strong	.	PRUNE2	331	.	NM_015225	exon8	c.G2235A	p.M745I	CTTCTCCATGGGC	.	PASS	Atlas-SNP
ORC2	4999	hgsc.bcm.edu	37	2	201785837	201785837	+	Silent	SNP	G	G	A	rs2307362	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	24	56	0	0.421053	0	G|0.783;A|0.217	0.217	strong	.	ORC2	48	.	NM_006190	exon14	c.C1173T	p.L391L	GTGGATGAGAAGG	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244129	244129	+	Missense_Mutation	SNP	C	C	T	rs7116130	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	140	1	1	0.00714286	C|0.202;T|0.798	0.798	strong	.	PSMD13	53	.	NM_175932	exon2	c.C184T	p.R62W	GCTCGGCGGTGCT	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64596823	64596823	+	Missense_Mutation	SNP	C	C	A	rs75568433	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	70	151	0	0.507246	0	C|0.990;A|0.010	0.010	strong	.	SYNE2	577	.	NM_182914	exon76	c.C14197A	p.P4733T	AGCAGCCCTTTCG	.	PASS	Atlas-SNP
TNIP2	79155	hgsc.bcm.edu	37	4	2744087	2744087	+	Missense_Mutation	SNP	G	G	A	rs2269495	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	89	131	0	0.549383	0	G|0.671;N|0.001	.	strong	TNIP2,NS,carcinoma,0,1	TNIP2	28	1	NM_024309	exon6	c.C1187T	p.A396V	CTCTGGGCCGCGC	.	PASS	Atlas-SNP
ARL2	402	hgsc.bcm.edu	37	11	64789222	64789222	+	Silent	SNP	C	C	T	rs61736632	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	35	40	0	0.603448	0	C|0.992;T|0.008	0.008	strong	.	ARL2	11	.	NM_001667	exon5	c.C450T	p.H150H	CAGCCACCACTGG	.	PASS	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	37	4	100532602	100532602	+	Missense_Mutation	SNP	G	G	A	rs113337987	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	64	116	0	0.615385	0	G|0.970;A|0.030	0.030	strong	MTTP,caecum,carcinoma,0,1	MTTP	127	1	NM_000253	exon15	c.G1981A	p.G661S	CTTCACGGTAGCC	.	PASS	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	37	2	67632125	67632125	+	Missense_Mutation	SNP	C	C	T	rs3770655	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	59	102	1	0.536364	0.00980392	C|0.244;T|0.756	0.756	strong	ETAA1,NS,carcinoma,-1,2	ETAA1	88	2	NM_019002	exon5	c.C2311T	p.P771S	GTTCTTCCAGGAA	.	scavenged	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982763	57982763	+	Missense_Mutation	SNP	A	A	G	rs61763008	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	51	255	0	0.262887	0	A|0.671;G|0.329	0.329	strong	OR1S1,NS,carcinoma,0,2	OR1S1	139	2	NM_001004458	exon1	c.A547G	p.N183D	TTCTGTAACCACA	.	PASS	Atlas-SNP
HSPBAP1	79663	hgsc.bcm.edu	37	3	122474121	122474121	+	Missense_Mutation	SNP	G	G	C	rs61756481	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	60	132	0	0.5	0	G|0.952;C|0.048	0.048	strong	.	HSPBAP1	32	.	NM_024610	exon5	c.C727G	p.L243V	GGCTCAGTGTAAC	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44071294	44071294	+	Silent	SNP	T	T	C	rs62063845	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	108	125	0	1	0	T|0.860;C|0.140	0.140	strong	.	MAPT	135	.	NM_001123066	exon10	c.T1512C	p.T504T	AGCGACTAAGCAA	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90501500	90501500	+	Missense_Mutation	SNP	G	G	A	rs34017995	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	43	66	0	0.632353	0	G|0.919;A|0.081	0.081	strong	.	.	.	.	NM_178828	exon4	c.G2098A	p.G700R	AGCTCCGGAAGGT	.	PASS	Atlas-SNP
EIF2A	83939	hgsc.bcm.edu	37	3	150280445	150280445	+	Missense_Mutation	SNP	C	C	G	rs1132979	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	19	35	0	0.5	0	C|0.635;G|0.365	0.365	strong	EIF2A_ENST00000487799,NS,carcinoma,0,1	EIF2A	59	1	NM_032025	exon4	c.C290G	p.T97S	CTTACACTAGTAA	.	PASS	Atlas-SNP
NPEPPS	9520	hgsc.bcm.edu	37	17	45669359	45669359	+	Missense_Mutation	SNP	T	T	G	rs76398682	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	765	221	693	0	0.288889	0	T|1.000;|0.000	.	weak	NPEPPS,mouth,carcinoma,0,1	NPEPPS	59	1	NM_006310	exon11	c.T1298G	p.F433C	AGATATTTGATGC	.	PASS	Atlas-SNP
THAP8	199745	hgsc.bcm.edu	37	19	36530428	36530428	+	Missense_Mutation	SNP	G	G	A	rs34250145	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	53	145	0	0.430894	0	G|0.931;A|0.069	0.069	strong	.	THAP8	11	.	NM_152658	exon3	c.C469T	p.P157S	GCTCAGGAGTTGG	.	PASS	Atlas-SNP
KLHL8	57563	hgsc.bcm.edu	37	4	88116518	88116518	+	Silent	SNP	A	A	G	rs74604071	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	68	165	0	0.427673	0	A|0.944;G|0.056	0.056	strong	KLHL8,NS,carcinoma,0,1	KLHL8	51	1	NM_020803	exon2	c.T174C	p.L58L	AAATCGAAGAAGA	.	PASS	Atlas-SNP
FLI1	2313	hgsc.bcm.edu	37	11	128675292	128675292	+	Silent	SNP	T	T	A	rs7113191	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	46	108	0	0.554217	0	T|0.855;A|0.145	0.145	strong	.	FLI1	72	.	NM_002017	exon6	c.T687A	p.A229A	AGGAGCTTGGGGC	.	PASS	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	37	21	44846016	44846016	+	Missense_Mutation	SNP	C	C	T	rs3746951	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	20	47	0	0.425532	0	C|0.827;T|0.173	0.173	strong	.	SIK1	65	.	NM_173354	exon2	c.G43A	p.G15S	CCTGACCCTGGCC	.	PASS	Atlas-SNP
ALK	238	hgsc.bcm.edu	37	2	29497967	29497967	+	Missense_Mutation	SNP	G	G	A	rs35228363	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	113	207	0	0.504464	0	G|0.984;A|0.016	0.016	strong	.	ALK	533	.	NM_004304	exon11	c.C2039T	p.T680I	TTACCTGTAGGGT	.	PASS	Atlas-SNP
TMTC4	84899	hgsc.bcm.edu	37	13	101287340	101287340	+	Missense_Mutation	SNP	C	C	T	rs946837	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	74	165	1	0.510345	0.00606061	C|0.645;N|0.001	.	strong	TMTC4,caecum,carcinoma,0,1	TMTC4	103	1	NM_032813	exon11	c.G1312A	p.V438I	ACCCAACGCTGGG	.	scavenged	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21196424	21196424	+	Missense_Mutation	SNP	T	T	A	rs11045676	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	41	83	0	0.471264	0	T|0.895;A|0.105	0.105	strong	.	SLCO1B7	85	.	NM_001009562	exon6	c.T743A	p.F248Y	CACTATTTTTGCA	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47856916	47856916	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	4	53	0	0.0519481	0	.	.	none	.	PCNT	283	.	NM_006031	exon40	c.C9021T	p.S3007S	GTCATCCAATGAG	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134340174	134340174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	55	115	0	0.44	0	.	.	none	.	PRRC2B	266	.	NM_013318	exon11	c.C1429T	p.R477W	ATGTTCCGGCAAC	.	PASS	Atlas-SNP
NAA25	80018	hgsc.bcm.edu	37	12	112471090	112471090	+	Missense_Mutation	SNP	G	G	T	rs12298022	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	35	97	0	0.421687	0	G|0.868;T|0.132	0.132	strong	.	NAA25	105	.	NM_024953	exon23	c.C2743A	p.L915I	CAATTAGATGTGT	.	PASS	Atlas-SNP
ZMYND12	84217	hgsc.bcm.edu	37	1	42915727	42915727	+	Silent	SNP	C	C	G	rs12047095	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	24	62	0	0.413793	0	C|0.791;G|0.209	0.209	strong	.	ZMYND12	35	.	NM_032257	exon2	c.G114C	p.G38G	TACCACCCCACTG	.	PASS	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	12952293	12952293	+	Silent	SNP	C	C	T	rs658856	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	52	112	0	0.412698	0	C|0.888;T|0.112	0.112	strong	DLC1,caecum,carcinoma,-1,1	DLC1	411	1	NM_182643	exon12	c.G3501A	p.S1167S	GGTTTCCGAGAGT	.	PASS	Atlas-SNP
MYEOV2	150678	hgsc.bcm.edu	37	2	241066325	241066325	+	Silent	SNP	A	A	C	rs12614632	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	47	103	0	0.516484	0	A|0.814;C|0.186	0.186	strong	.	MYEOV2	20	.	NM_138336	exon5	c.T414G	p.A138A	GTCCAAAGCTGCC	.	PASS	Atlas-SNP
MYO1D	4642	hgsc.bcm.edu	37	17	31048141	31048141	+	Missense_Mutation	SNP	G	G	A	rs375202047		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	84	140	0	0.518519	0	.	.	weak	.	MYO1D	93	.	NM_015194	exon15	c.C1813T	p.R605C	GGCAGCGTTCATC	.	PASS	Atlas-SNP
ABHD16B	140701	hgsc.bcm.edu	37	20	62492922	62492922	+	Missense_Mutation	SNP	T	T	A	rs2281534	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	36	61	0	0.521739	0	T|0.942;A|0.058	0.058	strong	.	ABHD16B	22	.	NM_080622	exon1	c.T29A	p.L10Q	AGGCGCTGGTGCG	.	PASS	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	37	2	100623130	100623130	+	Silent	SNP	G	G	A	rs34506074	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	30	64	0	0.491803	0	G|0.965;A|0.035	0.035	strong	.	AFF3	164	.	NM_001025108	exon6	c.C912T	p.A304A	GAGCTTGGCCTTG	.	PASS	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	37	10	72503344	72503344	+	Silent	SNP	G	G	A	rs10999502	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	87	142	0	0.56129	0	G|0.768;A|0.232	0.232	strong	ADAMTS14,NS,adenoma,0,1	ADAMTS14	148	1	NM_139155	exon13	c.G1974A	p.T658T	GGACACGGGGGAC	.	PASS	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	37	1	26608896	26608896	+	Missense_Mutation	SNP	C	C	G	rs72872911	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	15	41	0	0.394737	0	C|0.849;G|0.151	0.151	strong	UBXN11,colon,carcinoma,0,2	UBXN11	54	2	NM_183008	exon16	c.G1457C	p.C486S	CCGGGACAGGGAC	.	PASS	Atlas-SNP
LPA	4018	hgsc.bcm.edu	37	6	161007538	161007538	+	Missense_Mutation	SNP	G	G	C	rs7765803	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	43	132	0	0.383929	0	G|0.569;C|0.431	0.431	strong	.	LPA	237	.	NM_005577	exon26	c.C4072G	p.L1358V	TGAGGAGAGTTGA	.	PASS	Atlas-SNP
SLC27A5	10998	hgsc.bcm.edu	37	19	59009949	59009949	+	Missense_Mutation	SNP	G	G	C	rs145618122	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	25	83	0	0.480769	0	G|0.992;C|0.008	0.008	strong	.	SLC27A5	58	.	NM_012254	exon10	c.C2006G	p.A669G	GACTGGGCCCGGT	.	PASS	Atlas-SNP
AARS	16	hgsc.bcm.edu	37	16	70287177	70287177	+	Silent	SNP	A	A	G	rs4081753	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	166	171	1	1	0.00584795	A|0.137;C|0.000;G|0.863	0.863	strong	AARS,NS,carcinoma,0,1	AARS	62	1	NM_001605	exon20	c.T2715C	p.V905V	CTGGGGAACTTGA	.	PASS	Atlas-SNP
EBLN2	55096	hgsc.bcm.edu	37	3	73111368	73111368	+	Missense_Mutation	SNP	T	T	C	rs2231924	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	152	129	0	0.987013	0	T|0.501;C|0.499	0.499	strong	.	EBLN2	18	.	NM_018029	exon1	c.T136C	p.S46P	CAATTTTCCACAA	.	PASS	Atlas-SNP
TBXAS1	6916	hgsc.bcm.edu	37	7	139717523	139717523	+	Missense_Mutation	SNP	G	G	T	rs149988492	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	324	182	246	0	0.561728	0	G|1.000;T|0.000	0.000	strong	.	TBXAS1	121	.	NM_001166253	exon13	c.G1558T	p.G520W	CCCTTCGGGGCCG	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225533931	225533931	+	Missense_Mutation	SNP	A	A	G	rs17522489	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	62	133	0	0.48062	0	A|0.887;G|0.113	0.113	strong	.	DNAH14	300	.	NM_001373	exon68	c.A10667G	p.Q3556R	AAGAACAAGAACA	.	PASS	Atlas-SNP
RPH3AL	9501	hgsc.bcm.edu	37	17	96910	96910	+	Missense_Mutation	SNP	C	C	T	rs376959240		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	39	98	0	0.458824	0	.	.	weak	.	RPH3AL	18	.	NM_006987	exon7	c.G605A	p.R202Q	CTTCCTCGGGCCC	.	PASS	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	37	1	248112627	248112627	+	Silent	SNP	T	T	C	rs71535240	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	201	186	0	0.990148	0	C|1.000;|0.000	1.000	weak	.	OR2L8	92	.	NM_001001963	exon1	c.T468C	p.C156C	TGCTTGTGCTCAC	.	PASS	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	37	2	128321770	128321770	+	Missense_Mutation	SNP	G	G	A	rs2404991	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	58	112	0	0.471545	0	G|0.541;A|0.458	0.458	strong	.	MYO7B	359	.	NM_001080527	exon3	c.G61A	p.G21S	AAGACCGGCGTGG	.	PASS	Atlas-SNP
MAGEA11	4110	hgsc.bcm.edu	37	X	148798223	148798223	+	Silent	SNP	T	T	C	rs2233050	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	70	74	0	1	0	T|0.400;C|0.600	0.600	strong	.	MAGEA11	86	.	NM_005366	exon5	c.T1077C	p.L359L	GCTCCTTACCCAA	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1265987	1265987	+	Missense_Mutation	SNP	C	C	G	rs3021158	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	299	152	235	2	0.508361	0.00851064	C|0.873;G|0.127	0.127	strong	MUC5AC,brain,glioma,0,1	MUC5B	473	1	NM_002458	exon31	c.C7877G	p.T2626R	CAGGGACGGCACG	.	scavenged	Atlas-SNP
CCDC38	120935	hgsc.bcm.edu	37	12	96288860	96288860	+	Missense_Mutation	SNP	T	T	C	rs10859974	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	71	134	0	0.601695	0	T|0.772;C|0.228	0.228	strong	.	CCDC38	45	.	NM_182496	exon8	c.A679G	p.M227V	GAGACATTTGCAG	.	PASS	Atlas-SNP
HIST1H2BA	255626	hgsc.bcm.edu	37	6	25727517	25727517	+	Silent	SNP	G	G	A	rs9358872	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	25	77	0	0.396825	0	G|0.713;A|0.287	0.287	strong	.	HIST1H2BA	25	.	NM_170610	exon1	c.G381A	p.K127K	CTCCAAGTAAGCC	.	PASS	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72966002	72966002	+	Silent	SNP	G	G	A	rs3735943	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	91	88	0	1	0	G|0.483;A|0.517	0.517	strong	.	TRPA1	256	.	NM_007332	exon13	c.C1630T	p.L544L	CATCCAGGCGATC	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	37	1	62483599	62483599	+	Silent	SNP	G	G	A	rs34726576	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	53	130	0	0.473214	0	G|0.818;A|0.182	0.182	strong	.	INADL	179	.	NM_176877	exon29	c.G3939A	p.K1313K	ATCAAAGGTCAAG	.	PASS	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3148653	3148653	+	Missense_Mutation	SNP	T	T	G	rs1143646	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	94	190	0	0.460784	0	T|0.968;G|0.032	0.032	strong	.	HTT	221	.	NM_002111	exon25	c.T3273G	p.I1091M	TTTGATTTTGGCC	.	PASS	Atlas-SNP
ADRB2	154	hgsc.bcm.edu	37	5	148206646	148206646	+	Silent	SNP	G	G	A	rs113509650	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	93	170	0	0.522472	0	G|0.772;A|0.228	0.228	strong	.	ADRB2	42	.	NM_000024	exon1	c.G252A	p.L84L	GGGCCTGGCAGTG	.	PASS	Atlas-SNP
NREP	9315	hgsc.bcm.edu	37	5	111066697	111066697	+	Missense_Mutation	SNP	T	T	C	rs11559	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	38	109	0	0.452381	0	T|0.940;C|0.060	0.060	strong	C5orf13_ENST00000395634,brain,glioma,0,2	.	.	2	NM_001142475	exon4	c.A260G	p.E87G	TTTGTCTCATCGT	.	PASS	Atlas-SNP
TFG	10342	hgsc.bcm.edu	37	3	100467018	100467018	+	Silent	SNP	T	T	C	rs11353	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	304	139	277	0	0.457237	0	T|0.339;C|0.661	0.661	strong	.	TFG	42	.	NM_006070	exon8	c.T846C	p.P282P	TGGACCTCAACAA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412363	105412363	+	Missense_Mutation	SNP	T	T	C	rs201377363	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	13	238	1	0.448276	0.00420168	T|0.760;C|0.240	0.240	strong	AHNAK2_ENST00000333244,NS,NS,0,1	AHNAK2	719	1	NM_138420	exon7	c.A9425G	p.K3142R	TTGAACTTGCTGT	.	scavenged	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	37	5	149457678	149457678	+	Silent	SNP	G	G	A	rs2228422	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	80	188	1	0.410256	0.00531915	G|0.561;A|0.439	0.439	strong	CSF1R_ENST00000286301,NS,carcinoma,0,1	CSF1R	250	1	NM_005211	exon5	c.C726T	p.T242T	GACCTTGGTGTTG	.	scavenged	Atlas-SNP
FAM178B	51252	hgsc.bcm.edu	37	2	97638311	97638311	+	Missense_Mutation	SNP	G	G	A	rs146972264	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	20	37	0	0.357143	0	G|0.983;A|0.017	0.017	strong	.	FAM178B	35	.	NM_001122646	exon2	c.C106T	p.P36S	CCTGGGGCCCAGC	.	PASS	Atlas-SNP
CLSTN3	9746	hgsc.bcm.edu	37	12	7287956	7287956	+	Silent	SNP	C	C	T	rs34933247	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	251	132	242	0	0.525896	0	C|0.917;T|0.083	0.083	strong	.	CLSTN3	84	.	NM_014718	exon4	c.C417T	p.N139N	TGTGAACGAGTTT	.	PASS	Atlas-SNP
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197173	39197173	+	Silent	SNP	A	A	G	rs144980478	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	96	177	0	0.533333	0	A|0.996;G|0.004	0.004	strong	.	KRTAP1-1	23	.	NM_030967	exon1	c.T477C	p.C159C	CTGTCCACAGTAG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152283975	152283975	+	Silent	SNP	A	A	G	rs77811823		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	314	137	319	0	0.436306	0	.	.	weak	.	FLG	900	.	NM_002016	exon3	c.T3387C	p.S1129S	ATGGGCAGACTCA	.	PASS	Atlas-SNP
MAGEA1	4100	hgsc.bcm.edu	37	X	152482198	152482198	+	Silent	SNP	G	G	A	rs2233045	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	175	139	0	1	0	G|0.660;T|0.028	.	strong	.	MAGEA1	57	.	NM_004988	exon3	c.C813T	p.L271L	TTCAGCGAGGGCC	.	PASS	Atlas-SNP
BAAT	570	hgsc.bcm.edu	37	9	104133278	104133278	+	Missense_Mutation	SNP	C	C	T	rs144591246	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	59	131	0	0.44697	0	C|0.998;T|0.002	0.002	strong	.	BAAT	52	.	NM_001127610	exon2	c.G409A	p.V137I	GTGTGACACCAGG	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46909426	46909426	+	Silent	SNP	G	G	A	rs61731167	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	76	114	0	0.531469	0	G|0.956;A|0.044	0.044	strong	.	COL18A1	129	.	NM_030582	exon18	c.G2490A	p.P830P	GCTGCCGGGGGCG	.	PASS	Atlas-SNP
TRIM21	6737	hgsc.bcm.edu	37	11	4411241	4411241	+	Silent	SNP	C	C	T	rs926101	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	34	104	0	0.453333	0	C|0.811;T|0.189	0.189	strong	.	TRIM21	45	.	NM_003141	exon2	c.G399A	p.Q133Q	GTACTCCTGTGCA	.	PASS	Atlas-SNP
TACC1	6867	hgsc.bcm.edu	37	8	38677932	38677932	+	Silent	SNP	A	A	G	rs2013586	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	77	124	0	0.509934	0	A|0.696;G|0.304	0.304	strong	TACC1_ENST00000317827,NS,carcinoma,0,1	TACC1	98	1	NM_006283	exon3	c.A1170G	p.E390E	GTGGGAAAGCCCC	.	PASS	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	37	19	53056953	53056953	+	Missense_Mutation	SNP	G	G	A	rs329965	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	68	154	0	0.43871	0	G|0.792;A|0.208	0.208	strong	.	ZNF808	81	.	NM_001039886	exon5	c.G784A	p.D262N	AAATGTGATGTAT	.	PASS	Atlas-SNP
DENND1A	57706	hgsc.bcm.edu	37	9	126144441	126144441	+	Missense_Mutation	SNP	G	G	A	rs200503663	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	15	34	0	0.535714	0	.	.	weak	DENND1A,colon,carcinoma,-1,1	DENND1A	112	1	NM_020946	exon22	c.C2300T	p.P767L	CTGAGCGGCTGGA	.	PASS	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130129322	130129322	+	Missense_Mutation	SNP	G	G	C	rs35886424	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	100	112	0	0.990099	0	G|0.888;C|0.112	0.112	strong	.	COL6A5	205	.	NM_153264	exon20	c.G4616C	p.S1539T	GTAGAAGTGGACA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506014	195506014	+	Missense_Mutation	SNP	G	G	A	rs200152370		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	19	154	0	0.140741	0	.	.	weak	.	MUC4	1505	.	NM_018406	exon2	c.C12437T	p.P4146L	GTGACAGGAAGAG	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32134207	32134207	+	Missense_Mutation	SNP	C	C	A	rs2388981	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	65	133	0	0.448276	0	C|0.850;A|0.150	0.150	strong	.	.	.	.	NM_018169	exon4	c.C318A	p.H106Q	AACTCACAATTTG	.	PASS	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	37	12	71977787	71977787	+	Missense_Mutation	SNP	T	T	C	rs17109924	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	86	148	0	0.502924	0	T|0.922;C|0.078	0.078	strong	LGR5,bladder,carcinoma,-1,1	LGR5	103	1	NM_003667	exon18	c.T1997C	p.V666A	TCTCTGTGAAATA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506482	195506482	+	Missense_Mutation	SNP	G	G	T	rs113936020	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	4	12	4	0.210526	0.333333	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,-1,1	MUC4	1505	1	NM_018406	exon2	c.C11969A	p.T3990N	GAGGAAGTGTCGG	.	scavenged	Atlas-SNP
PADI3	51702	hgsc.bcm.edu	37	1	17601165	17601165	+	Silent	SNP	C	C	T	rs11585357	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	51	108	0	0.586207	0	C|0.902;T|0.098	0.098	strong	PADI3,colon,carcinoma,+2,1	PADI3	81	1	NM_016233	exon11	c.C1191T	p.R397R	ACCACGCGACAGG	.	PASS	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	37	3	194387300	194387300	+	Silent	SNP	C	C	T	rs1675943	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	46	79	0	0.547619	0	C|0.573;T|0.427	0.427	strong	.	LSG1	38	.	NM_018385	exon3	c.G228A	p.E76E	AAGTTTCTCTGTT	.	PASS	Atlas-SNP
TUBG2	27175	hgsc.bcm.edu	37	17	40818353	40818353	+	Silent	SNP	C	C	T	rs523338	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	347	41	247	0	0.118156	0	C|0.801;T|0.199	0.199	strong	TUBG2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	TUBG2	43	1	NM_016437	exon10	c.C1009T	p.L337L	AAGAGCCTGCAGA	.	scavenged	Atlas-SNP
SDHAF1	644096	hgsc.bcm.edu	37	19	36486509	36486509	+	Silent	SNP	C	C	G	rs76336581	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	7	15	0	0.466667	0	C|0.958;G|0.042	0.042	strong	.	.	.	.	NM_001042631	exon1	c.C333G	p.R111R	GACCCGCCCCGAC	.	PASS	Atlas-SNP
STARD3	10948	hgsc.bcm.edu	37	17	37818561	37818561	+	Silent	SNP	T	T	C	rs2941513	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	62	153	0	0.455882	0	T|0.953;C|0.047	0.047	strong	.	STARD3	33	.	NM_006804	exon14	c.T1197C	p.V399V	CCGTGTTTGCACC	.	PASS	Atlas-SNP
ZNF789	285989	hgsc.bcm.edu	37	7	99081730	99081730	+	Missense_Mutation	SNP	A	A	G	rs6962772	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	71	106	0	0.482993	0	A|0.607;G|0.393	0.393	strong	.	ZNF789	33	.	NM_213603	exon4	c.A229G	p.T77A	CCGAGAACTGGGA	.	PASS	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49998824	49998824	+	Silent	SNP	C	C	T	rs10857644	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	75	180	0	0.443787	0	C|0.834;T|0.166	0.166	strong	WDFY4,colon,carcinoma,0,1	WDFY4	205	1	NM_020945	exon23	c.C4119T	p.G1373G	CATTGGCGGGCCT	.	PASS	Atlas-SNP
CCDC114	93233	hgsc.bcm.edu	37	19	48806015	48806015	+	Silent	SNP	C	C	T	rs34540645	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	63	112	0	0.512195	0	C|0.935;T|0.065	0.065	strong	.	CCDC114	100	.	NM_144577	exon10	c.G1065A	p.S355S	AGCCTCCGAGTGC	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12409535	12409535	+	Silent	SNP	A	A	G	rs3801366	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	75	160	0	0.524476	0	A|0.851;G|0.149	0.149	strong	.	VWDE	123	.	NM_001135924	exon12	c.T2397C	p.S799S	GAGGCCAGAGGGA	.	PASS	Atlas-SNP
WHAMM	123720	hgsc.bcm.edu	37	15	83502066	83502066	+	Missense_Mutation	SNP	C	C	G	rs11259954	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	41	64	0	0.569444	0	C|0.877;G|0.123	0.123	strong	.	WHAMM	63	.	NM_001080435	exon10	c.C2208G	p.H736Q	TCCCCACGCCTCA	.	PASS	Atlas-SNP
PRX	57716	hgsc.bcm.edu	37	19	40901496	40901496	+	Missense_Mutation	SNP	T	T	C	rs268673	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	49	111	0	0.515789	0	T|0.669;C|0.331	0.331	strong	.	PRX	151	.	NM_181882	exon7	c.A2763G	p.I921M	TGTCTCTATCATC	.	PASS	Atlas-SNP
CD200	4345	hgsc.bcm.edu	37	3	112066562	112066562	+	Silent	SNP	G	G	A	rs1050572	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	34	54	0	0.419753	0	G|0.836;A|0.164	0.164	strong	CD200,NS,carcinoma,0,1	CD200	33	1	NM_001004196	exon5	c.G654A	p.T218T	GACCACGTCTGTT	.	PASS	Atlas-SNP
PCED1B	91523	hgsc.bcm.edu	37	12	47629368	47629368	+	Silent	SNP	G	G	T	rs2244818	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	17	25	0	0.435897	0	G|0.835;T|0.165	0.165	strong	.	.	.	.	NM_138371	exon2	c.G522T	p.G174G	CACCGGGGGTTTT	.	PASS	Atlas-SNP
PIK3IP1	113791	hgsc.bcm.edu	37	22	31679110	31679110	+	Missense_Mutation	SNP	G	G	C	rs2040533	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	41	81	0	0.427083	0	G|0.183;C|0.817	0.817	strong	.	PIK3IP1	20	.	NM_052880	exon6	c.C752G	p.T251S	GGGGTGGTGCCCT	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79325297	79325297	+	Silent	SNP	T	T	G	rs11145018	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	279	135	250	0	0.483871	0	T|0.748;G|0.252	0.252	strong	.	PRUNE2	331	.	NM_015225	exon8	c.A1893C	p.T631T	ATCTTCTGTATAG	.	PASS	Atlas-SNP
CATSPER4	378807	hgsc.bcm.edu	37	1	26524520	26524520	+	Silent	SNP	G	G	A	rs61776651	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	72	168	0	0.486486	0	G|0.917;A|0.083	0.083	strong	.	CATSPER4	59	.	NM_198137	exon5	c.G630A	p.S210S	GCAGTCGGTGCCT	.	PASS	Atlas-SNP
TMEM136	219902	hgsc.bcm.edu	37	11	120198093	120198093	+	Silent	SNP	G	G	A	rs1893261	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	92	212	0	0.444444	0	G|0.611;A|0.389	0.389	strong	.	TMEM136	35	.	NM_001198670	exon2	c.G9A	p.Q3Q	GACCCAGTGCTGT	.	PASS	Atlas-SNP
FCGR3B	2215	hgsc.bcm.edu	37	1	161599571	161599571	+	Missense_Mutation	SNP	T	T	C	rs2290834	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	54	325	0	0.23176	0	.	.	weak	FCGR3B,NS,carcinoma,+2,1	FCGR3B	35	1	NM_001244753	exon3	c.A424G	p.I142V	CACCGATATGGAC	.	scavenged	Atlas-SNP
MTRR	4552	hgsc.bcm.edu	37	5	7892933	7892933	+	Silent	SNP	A	A	G	rs35890938	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	72	131	0	0.455696	0	A|0.981;G|0.019	0.019	strong	.	MTRR	74	.	NM_024010	exon11	c.A1545G	p.V515V	GGGAGTATGTACA	.	PASS	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	37	2	171242761	171242761	+	Silent	SNP	G	G	A	rs17497636	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	116	232	0	0.493617	0	G|0.891;A|0.109	0.109	strong	.	MYO3B	320	.	NM_001083615	exon13	c.G1353A	p.Q451Q	TGTTCAGCATTTG	.	PASS	Atlas-SNP
ALDH16A1	126133	hgsc.bcm.edu	37	19	49967680	49967680	+	Silent	SNP	G	G	A	rs2293009	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	40	80	0	0.380952	0	G|0.712;A|0.288	0.288	strong	.	ALDH16A1	54	.	NM_153329	exon11	c.G1338A	p.Q446Q	GCTCCAGGTGGGC	.	PASS	Atlas-SNP
KIR2DL3	3804	hgsc.bcm.edu	37	19	55263898	55263898	+	Missense_Mutation	SNP	G	G	A	rs78177475		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	123	210	1	0.960938	0.0047619	.	.	weak	KIR2DL3,NS,carcinoma,0,2	KIR2DL3	68	2	NM_015868	exon8	c.G953A	p.R318H	TCACTCGCCCTTC	.	PASS	Atlas-SNP
TKT	7086	hgsc.bcm.edu	37	3	53264485	53264485	+	Silent	SNP	A	A	G	rs1131728	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	76	148	0	0.444444	0	T|0.159;G|0.140;C|0.026;A|0.674	0.140	strong	.	TKT	38	.	NM_001258028	exon9	c.T1119C	p.A373A	CTGCTCAGCAATG	.	PASS	Atlas-SNP
C5orf58	133874	hgsc.bcm.edu	37	5	169661994	169661994	+	Missense_Mutation	SNP	G	G	C	rs957998	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	70	143	0	0.421687	0	G|0.480;C|0.520	0.520	strong	.	C5orf58	13	.	NM_001102609	exon3	c.G77C	p.R26P	AGAAGCGTGTTAC	.	PASS	Atlas-SNP
HAUS6	54801	hgsc.bcm.edu	37	9	19063108	19063108	+	Silent	SNP	T	T	C	rs61740790	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	81	187	0	0.465517	0	T|0.703;C|0.297	0.297	strong	.	HAUS6	66	.	NM_017645	exon14	c.A1527G	p.L509L	ATCTGATAATGGA	.	PASS	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	37	6	56033094	56033094	+	Missense_Mutation	SNP	G	G	A	rs35471617	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	33	39	0	0.673469	0	G|0.927;A|0.073	0.073	strong	COL21A1_ENST00000244728,caecum,carcinoma,+1,2	COL21A1	201	2	NM_030820	exon6	c.C1028T	p.T343M	AACAACGTCTACA	.	PASS	Atlas-SNP
CPA4	51200	hgsc.bcm.edu	37	7	129938598	129938598	+	Missense_Mutation	SNP	G	G	T	rs34587586	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	101	218	0	0.480952	0	G|0.630;T|0.370	0.370	strong	.	CPA4	47	.	NM_016352	exon2	c.G81T	p.L27F	AGTTTTGAGGATT	.	PASS	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	37	8	124987478	124987478	+	Silent	SNP	T	T	C	rs7465584	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	194	199	0	0.994872	0	C|0.427;N|0.000	0.427	strong	.	FER1L6	268	.	NM_001039112	exon8	c.T615C	p.S205S	CATCAGTGTCATG	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	613898	613898	+	Silent	SNP	T	T	C	rs1054786	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	18	43	0	0.418605	0	T|0.274;C|0.726	0.726	strong	.	HCN2	36	.	NM_001194	exon7	c.T1872C	p.A624A	GCGGGCTGACACC	.	PASS	Atlas-SNP
PKP1	5317	hgsc.bcm.edu	37	1	201252866	201252866	+	Silent	SNP	C	C	T	rs2268147	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	60	89	0	0.540541	0	C|0.839;T|0.161	0.161	strong	.	PKP1	127	.	NM_001005337	exon1	c.C36T	p.Y12Y	GGCGTACGAATGC	.	PASS	Atlas-SNP
HEXB	3074	hgsc.bcm.edu	37	5	73985215	73985215	+	Missense_Mutation	SNP	A	A	G	rs11556045	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	79	169	0	0.564286	0	A|0.792;G|0.208	0.208	strong	HEXB,NS,carcinoma,0,1	HEXB	34	1	NM_000521	exon2	c.A362G	p.K121R	AGGCTAAAACCCA	.	PASS	Atlas-SNP
TUBGCP6	85378	hgsc.bcm.edu	37	22	50660137	50660137	+	Missense_Mutation	SNP	G	G	A	rs34455105	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	86	195	0	0.457447	0	G|0.956;A|0.044	0.044	strong	.	TUBGCP6	132	.	NM_020461	exon16	c.C2651T	p.A884V	CCCTCCGCCTGCT	.	PASS	Atlas-SNP
BFSP1	631	hgsc.bcm.edu	37	20	17474791	17474791	+	Silent	SNP	G	G	A	rs6080717	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	114	205	0	0.481013	0	G|0.761;A|0.239	0.239	strong	BFSP1,NS,carcinoma,0,1	BFSP1	55	1	NM_001195	exon8	c.C1926T	p.T642T	CACAGCGGTTTCT	.	PASS	Atlas-SNP
SPATA31A6	389730	hgsc.bcm.edu	37	9	43626820	43626820	+	Missense_Mutation	SNP	G	G	C	rs138779714	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	34	12	0	0.666667	0	G|0.760;C|0.240	0.240	strong	FAM75A6,NS,carcinoma,0,2	.	.	2	NM_001145196	exon4	c.C1867G	p.R623G	CGTCCCGAAGCTG	.	scavenged	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	37	17	5284698	5284698	+	Silent	SNP	A	A	G	rs1143206	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	34	63	0	0.409639	0	A|0.519;G|0.481	0.481	strong	.	RABEP1	59	.	NM_004703	exon17	c.A2385G	p.Q795Q	TGAACAACTAATG	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254037	39254037	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	20	52	0	0.229885	0	.	.	none	KRTAP4-8,NS,carcinoma,0,1	KRTAP4-8	57	1	NM_031960	exon1	c.C300T	p.C100C	GGGGCGGCAGCAG	.	scavenged	Atlas-SNP
SH3BGR	6450	hgsc.bcm.edu	37	21	40871810	40871810	+	Missense_Mutation	SNP	T	T	C	rs9974333	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	83	71	0	0.976471	0	T|0.476;C|0.524	0.524	strong	SH3BGR,NS,carcinoma,-1,2	SH3BGR	29	2	NM_007341	exon4	c.T563C	p.V188A	AAGATGTGGGCAA	.	PASS	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	37	1	10725498	10725498	+	Silent	SNP	G	G	A	rs284322	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	14	29	0	0.5	0	G|0.817;A|0.183	0.183	strong	.	CASZ1	150	.	NM_001079843	exon5	c.C147T	p.D49D	GCCGGCGTCAGCT	.	PASS	Atlas-SNP
RCN2	5955	hgsc.bcm.edu	37	15	77241542	77241542	+	Silent	SNP	T	T	C	rs15939	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	25	46	0	0.431034	0	T|0.927;C|0.073	0.073	strong	.	RCN2	16	.	NM_001271837	exon8	c.T987C	p.Y329Y	TGACTATTTCTAT	.	PASS	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	37	4	154553973	154553973	+	Silent	SNP	G	G	A	rs35897141	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	119	252	0	0.52193	0	G|0.960;A|0.040	0.040	strong	.	KIAA0922	214	.	NM_001131007	exon32	c.G4311A	p.S1437S	GGAGTCGGCCCCG	.	PASS	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	37	7	87138645	87138645	+	Silent	SNP	A	A	G	rs1045642	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	58	126	0	0.508772	0	T|0.007;G|0.591;C|0.006;A|0.396	0.591	strong	.	ABCB1	263	.	NM_000927	exon27	c.T3435C	p.I1145I	CCTCACAATCTCT	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537294	88537294	+	Silent	SNP	T	T	C	rs372422242		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	17	216	0	0.0960452	0	.	.	weak	.	DSPP	174	.	NM_014208	exon5	c.T3480C	p.S1160S	CAGCAGTGACAGC	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189125	11189125	+	Silent	SNP	C	C	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	14	162	0	0.0843373	0	.	.	none	AMAC1L2,NS,carcinoma,+1,1	.	.	1	NM_054028	exon1	c.C510A	p.I170I	ACTAATCATCATT	.	PASS	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2266812	2266812	+	Silent	SNP	T	T	C	rs2003968	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	117	111	1	0.991525	0.00900901	C|0.502;T|0.498	0.502	strong	SGSM2,rectum,carcinoma,0,1	SGSM2	60	1	NM_001098509	exon7	c.T726C	p.C242C	TGCCTGTGCCCGC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	rs10438246	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	207	189	1	0.995192	0.00529101	T|0.456;C|0.544	0.544	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A11605G	p.M3869V	GTTTCATGTCCAC	.	PASS	Atlas-SNP
TNIK	23043	hgsc.bcm.edu	37	3	170802910	170802910	+	Missense_Mutation	SNP	C	C	T	rs17857452	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	56	98	0	0.54902	0	C|0.934;G|0.013;T|0.052	0.052	strong	.	TNIK	313	.	NM_015028	exon25	c.G2995A	p.A999T	TACCTGCGGCTGA	.	PASS	Atlas-SNP
TOP2B	7155	hgsc.bcm.edu	37	3	25679738	25679738	+	Silent	SNP	T	T	C	rs60422476	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	82	218	1	0.476744	0.00458716	T|0.700;C|0.300	0.300	strong	.	TOP2B	98	.	NM_001068	exon5	c.A444G	p.V148V	TTTCTCTACCTTG	.	PASS	Atlas-SNP
STRC	161497	hgsc.bcm.edu	37	15	43900153	43900153	+	Silent	SNP	C	C	T	rs62018890		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	516	239	480	2	0.463178	0.00416667	C|0.500;T|0.500	0.500	weak	.	STRC	58	.	NM_153700	exon18	c.G3702A	p.E1234E	CTGTAGCTCTGCC	.	PASS	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279710	1279710	+	Silent	SNP	G	G	A	rs200630968	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	58	114	0	0.674419	0	G|0.872;A|0.128	0.128	strong	.	TPSB2	8	.	NM_024164	exon3	c.C90T	p.G30G	AACGATGCCCACT	.	PASS	Atlas-SNP
SP9	100131390	hgsc.bcm.edu	37	2	175201299	175201299	+	Silent	SNP	C	C	G	rs62174227	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	9	16	0	0.6	0	C|0.661;G|0.339	0.339	strong	.	SP9	15	.	NM_001145250	exon2	c.C486G	p.G162G	GTCGGGCTTCCAT	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197070707	197070707	+	Silent	SNP	G	G	A	rs41308365	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	35	55	0	0.59322	0	A|0.300;G|0.700;T|0.000	0.300	strong	.	ASPM	444	.	NM_018136	exon18	c.C7674T	p.I2558I	TATTACGATAGAA	.	PASS	Atlas-SNP
SCAF4	57466	hgsc.bcm.edu	37	21	33074608	33074608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	297	3	228	0	0.010101	0	.	.	none	SCAF4,NS,carcinoma,+2,1	SCAF4	142	1	NM_020706	exon5	c.G406A	p.A136T	TTCCCGCTGCCAT	.	scavenged	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17084078	17084078	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1404	117	1222	1	0.0833333	0.000818331	.	.	none	Q13209_HUMAN,NS,haematopoietic_neoplasm,0,1	.	.	1	NM_001271733	exon14	c.C1843T	p.R615X	GTCCTCGGTGCTT	.	scavenged	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43522349	43522349	+	Silent	SNP	T	T	C	rs220109	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	42	99	0	0.446809	0	T|0.458;C|0.542	0.542	strong	.	UMODL1	186	.	NM_173568	exon8	c.T1260C	p.S420S	CAGCAGTGTGGAG	.	PASS	Atlas-SNP
AFG3L2	10939	hgsc.bcm.edu	37	18	12348285	12348285	+	Silent	SNP	T	T	C	rs11553521	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	117	133	1	1	0.0075188	T|0.239;C|0.761	0.761	strong	AFG3L2,NS,carcinoma,0,1	AFG3L2	60	1	NM_006796	exon13	c.A1650G	p.E550E	CACTCGTTCAATT	.	PASS	Atlas-SNP
CINP	51550	hgsc.bcm.edu	37	14	102814945	102814945	+	Silent	SNP	G	G	A	rs7012	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	56	107	0	0.509091	0	G|0.737;A|0.263	0.263	strong	.	CINP	17	.	NM_001177611	exon5	c.C633T	p.S211S	CAGCCTGCTGTCG	.	PASS	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	37	22	43618695	43618695	+	Missense_Mutation	SNP	C	C	A	rs148458324	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	49	71	0	0.597561	0	C|0.994;A|0.006	0.006	strong	.	SCUBE1	105	.	NM_173050	exon12	c.G1381T	p.A461S	GCAGCGCCTTGCC	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1272039	1272039	+	Silent	SNP	G	G	A	rs2943513	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	480	219	382	0	0.45625	0	G|0.925;A|0.075	0.075	strong	.	MUC5B	473	.	NM_002458	exon31	c.G13929A	p.P4643P	CATCCCGGGGACC	.	PASS	Atlas-SNP
FICD	11153	hgsc.bcm.edu	37	12	108912621	108912621	+	Missense_Mutation	SNP	C	C	A	rs146316463	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	76	106	0	0.567164	0	C|0.999;A|0.001	0.001	strong	.	FICD	35	.	NM_007076	exon3	c.C746A	p.T249N	TGGAGACCCGCTA	.	PASS	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	37	3	126137558	126137558	+	Silent	SNP	C	C	T	rs4679242	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	42	65	0	0.525	0	C|0.760;T|0.240	0.240	strong	.	CCDC37	69	.	NM_182628	exon7	c.C591T	p.A197A	GGACGCCGCCTTG	.	PASS	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	37	6	168352105	168352105	+	Silent	SNP	G	G	A	rs2076664	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	30	54	0	0.365854	0	G|0.852;A|0.148	0.148	strong	MLLT4,NS,carcinoma,+1,1	MLLT4	351	1	NM_001040000	exon29	c.G4050A	p.P1350P	CATACCGGCCACC	.	PASS	Atlas-SNP
GALC	2581	hgsc.bcm.edu	37	14	88414211	88414211	+	Silent	SNP	G	G	A	rs398076	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	38	91	0	0.452381	0	G|0.650;A|0.350	0.350	strong	.	GALC	48	.	NM_000153	exon13	c.C1350T	p.S450S	GCCATCGCTGTCA	.	PASS	Atlas-SNP
PIGZ	80235	hgsc.bcm.edu	37	3	196674518	196674518	+	Missense_Mutation	SNP	A	A	G	rs1147238	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	39	95	0	0.386139	0	A|0.789;G|0.211	0.211	strong	.	PIGZ	34	.	NM_025163	exon3	c.T1250C	p.V417A	AAGAGGACCACAG	.	PASS	Atlas-SNP
LY6G6F	259215	hgsc.bcm.edu	37	6	31675501	31675501	+	Missense_Mutation	SNP	G	G	A	rs9267547	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	181	144	0	1	0	G|0.854;A|0.146	0.146	strong	LY6G6F,NS,lymphoid_neoplasm,0,1	LY6G6F	23	1	NM_001003693	exon2	c.G319A	p.A107T	TGGTGCGCTGTGC	.	PASS	Atlas-SNP
RHBG	57127	hgsc.bcm.edu	37	1	156347834	156347834	+	Missense_Mutation	SNP	T	T	A	rs11586833	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	95	168	2	0.542857	0.0119048	T|0.733;A|0.267	0.267	strong	RHBG,NS,carcinoma,0,1	RHBG	133	1	NM_020407	exon3	c.T428A	p.V143D	GTGCCGTCCTGGG	.	scavenged	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	37	5	137708434	137708434	+	Silent	SNP	C	C	T	rs4835678	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	76	215	0	0.45509	0	C|0.379;T|0.621	0.621	strong	.	KDM3B	177	.	NM_016604	exon2	c.C264T	p.I88I	AGTTATCGTGCTT	.	PASS	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	37	20	44578961	44578961	+	Silent	SNP	A	A	G	rs3746503	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	77	167	0	0.425414	0	A|0.879;G|0.121	0.121	strong	.	ZNF335	115	.	NM_022095	exon22	c.T3384C	p.P1128P	CCCATCAGGACTG	.	PASS	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	37	1	26608866	26608866	+	Missense_Mutation	SNP	C	C	G	rs188535926	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	8	25	0	0.228571	0	C|0.991;G|0.009	0.009	strong	UBXN11,colon,carcinoma,-1,2	UBXN11	54	2	NM_183008	exon16	c.G1487C	p.G496A	CCGGGACCGGGAC	.	PASS	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	37	12	667726	667726	+	Missense_Mutation	SNP	G	G	C	rs61730392	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	71	131	0	0.47973	0	G|0.996;C|0.004	0.004	strong	.	B4GALNT3	64	.	NM_173593	exon18	c.G2660C	p.G887A	CAGCTGGAGTCAT	.	PASS	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40363926	40363926	+	Missense_Mutation	SNP	C	C	G	rs3746013	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	133	139	1	0.992537	0.00719424	C|0.746;G|0.254	0.254	strong	FCGBP,NS,carcinoma,0,1	FCGBP	416	1	NM_003890	exon31	c.G14716C	p.D4906H	GGAGATCTCCAGC	.	PASS	Atlas-SNP
NRIP1	8204	hgsc.bcm.edu	37	21	16339172	16339172	+	Missense_Mutation	SNP	G	G	C	rs2229742	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	310	150	261	1	0.483871	0.00383142	G|0.929;C|0.071	0.071	strong	NRIP1,NS,carcinoma,+1,1	NRIP1	103	1	NM_003489	exon4	c.C1342G	p.R448G	CAGTTCGGTGTTT	.	PASS	Atlas-SNP
IQCF6	440956	hgsc.bcm.edu	37	3	51812952	51812952	+	Missense_Mutation	SNP	C	C	T	rs11130296	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	52	90	0	0.477064	0	C|0.837;T|0.163	0.163	strong	.	IQCF6	2	.	NM_001143833	exon2	c.G11A	p.R4Q	AACGTCCGGCGCA	.	PASS	Atlas-SNP
NDUFA7	4701	hgsc.bcm.edu	37	19	8376431	8376431	+	Silent	SNP	G	G	A	rs561	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	56	122	0	0.5	0	G|0.844;A|0.156	0.156	strong	.	NDUFA7	11	.	NM_005001	exon4	c.C300T	p.P100P	CTTTATGGGAGGA	.	PASS	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	37	11	5020832	5020832	+	Missense_Mutation	SNP	C	C	T	rs10768450	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	344	134	315	1	0.389535	0.0031746	C|0.721;T|0.279	0.279	strong	.	OR51L1	60	.	NM_001004755	exon1	c.C620T	p.A207V	TCATTGCCACACT	.	PASS	Atlas-SNP
RIC3	79608	hgsc.bcm.edu	37	11	8159857	8159857	+	Missense_Mutation	SNP	C	C	T	rs55990541	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	51	122	0	0.41129	0	C|0.934;T|0.066	0.066	strong	.	RIC3	42	.	NM_001206672	exon3	c.G389A	p.C130Y	GTATAGCATTTCC	.	PASS	Atlas-SNP
ENOSF1	55556	hgsc.bcm.edu	37	18	691266	691266	+	Missense_Mutation	SNP	A	A	G	rs2612086	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	68	172	0	0.519084	0	T|0.005;G|0.301	0.301	strong	.	ENOSF1	44	.	NM_202758	exon6	c.T497C	p.M166T	ACCAGCATCCTGG	.	PASS	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65245962	65245962	+	Silent	SNP	A	A	G	rs1741487	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	104	115	1	0.990476	0.00869565	A|0.635;G|0.365	0.365	strong	.	SPTB	378	.	NM_001024858	exon21	c.T4476C	p.L1492L	CACCCAAAGCTGC	.	PASS	Atlas-SNP
ZNF746	155061	hgsc.bcm.edu	37	7	149190046	149190046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	10	137	0	0.0568182	0	.	.	none	ZNF746,NS,neuroblastoma,0,1	ZNF746	68	1	NM_001163474	exon4	c.C424T	p.P142S	CCTCGGGCTTGGA	.	scavenged	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56386732	56386732	+	Missense_Mutation	SNP	C	C	T	rs61741210	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	17	36	0	0.425	0	C|0.982;T|0.018	0.018	strong	.	BZRAP1	287	.	NM_004758	exon22	c.G3901A	p.D1301N	AGGGGTCGGGCTG	.	PASS	Atlas-SNP
C11orf49	79096	hgsc.bcm.edu	37	11	47185680	47185680	+	Silent	SNP	G	G	A	rs11039114	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	64	115	0	0.470588	0	G|0.847;A|0.153	0.153	strong	.	C11orf49	41	.	NM_001003678	exon9	c.G858A	p.Q286Q	ACGGCAGCACAGA	.	PASS	Atlas-SNP
XAGE3	170626	hgsc.bcm.edu	37	X	52891653	52891653	+	Silent	SNP	C	C	T	rs73206488	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	96	97	0	0.45933	0	C|0.500;T|0.500	0.500	strong	.	XAGE3	8	.	NM_133179	exon5	c.G330A	p.Q110Q	TTAAACCTGTGGT	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134351343	134351343	+	Missense_Mutation	SNP	C	C	T	rs11243403	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	32	59	0	0.571429	0	C|0.636;T|0.364	0.364	strong	.	PRRC2B	266	.	NM_013318	exon15	c.C3827T	p.A1276V	GCCGCGCGGAGGA	.	PASS	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	37	12	118520170	118520170	+	Silent	SNP	G	G	A	rs7488309	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	132	119	0	1	0	G|0.506;A|0.494	0.494	strong	VSIG10,colon,carcinoma,0,1	VSIG10	41	1	NM_019086	exon3	c.C426T	p.Y142Y	GGCTGCGTAGAGG	.	PASS	Atlas-SNP
MRPS24	64951	hgsc.bcm.edu	37	7	43906513	43906513	+	Missense_Mutation	SNP	A	A	G	rs670573	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	27	66	0	0.5	0	T|0.000;G|0.102;N|0.000;A|0.898	0.102	strong	.	MRPS24	9	.	NM_032014	exon4	c.T289C	p.W97R	TACCCCACATGAA	.	PASS	Atlas-SNP
CD300A	11314	hgsc.bcm.edu	37	17	72469958	72469958	+	Silent	SNP	A	A	G	rs1127737	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	259	259	255	0	1	0	A|0.418;G|0.582	0.582	strong	.	CD300A	40	.	NM_007261	exon2	c.A324G	p.P108P	TACACCATGGCTC	.	PASS	Atlas-SNP
IQCB1	9657	hgsc.bcm.edu	37	3	121500699	121500699	+	Missense_Mutation	SNP	C	C	T	rs17849995	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	14	60	0	0.35	0	C|0.759;T|0.241	0.241	strong	.	IQCB1	50	.	NM_001023570	exon13	c.G1301A	p.C434Y	TTACGGCACTTCG	.	PASS	Atlas-SNP
MRPL11	65003	hgsc.bcm.edu	37	11	66206169	66206169	+	Silent	SNP	C	C	T	rs11110	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	20	41	0	0.5	0	C|0.735;T|0.265	0.265	strong	.	MRPL11	25	.	NM_170739	exon1	c.G57A	p.V19V	CCGGATCACACCG	.	PASS	Atlas-SNP
GIMAP1-GIMAP5	0	hgsc.bcm.edu	37	7	150439500	150439500	+	Silent	SNP	C	C	T	rs759011	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	36	81	1	0.5	0.0123457	T|0.385;G|0.004	0.385	strong	GIMAP5,NS,carcinoma,0,1	.	.	1	NM_001199577	exon6	c.C885T	p.A295A	ACAGGCCGATACC	.	scavenged	Atlas-SNP
PSMD8	5714	hgsc.bcm.edu	37	19	38872778	38872778	+	Silent	SNP	C	C	T	rs1131182	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	19	47	0	0.404255	0	C|0.918;T|0.082	0.082	strong	.	PSMD8	31	.	NM_002812	exon6	c.C825T	p.I275I	GTGCATCGAGAAG	.	PASS	Atlas-SNP
PSIP1	11168	hgsc.bcm.edu	37	9	15486870	15486870	+	Silent	SNP	A	A	G	rs2821529	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	54	156	0	0.406015	0	T|0.000;G|0.078;A|0.922	0.078	strong	.	PSIP1	93	.	NM_021144	exon4	c.T348C	p.S116S	TGAAACACTAGTT	.	PASS	Atlas-SNP
ABHD16A	7920	hgsc.bcm.edu	37	6	31655438	31655438	+	Silent	SNP	G	G	A	rs10573	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	109	0	1	0	G|0.901;A|0.099	0.099	strong	.	ABHD16A	34	.	NM_021160	exon18	c.C1527T	p.P509P	GAAGTCGGGCCCG	.	PASS	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46115731	46115731	+	Missense_Mutation	SNP	C	C	A	rs1536207	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	201	174	0	1	0	C|0.626;A|0.374	0.374	strong	.	FAM194B	42	.	NM_182542	exon15	c.G1957T	p.V653F	GAAGGACCCGGAT	.	PASS	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	37	1	171526910	171526910	+	Missense_Mutation	SNP	G	G	A	rs12025905	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	251	197	1	0.965385	0.00507614	G|0.862;A|0.138	0.138	strong	.	.	.	.	NM_015172	exon19	c.G5653A	p.A1885T	CCAGCTGCCCCAG	.	PASS	Atlas-SNP
CDKN2B	1030	hgsc.bcm.edu	37	9	22006147	22006147	+	Missense_Mutation	SNP	C	C	T	rs148421170	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	27	52	0	0.586957	0	C|0.998;T|0.002	0.002	strong	.	CDKN2B	12	.	NM_004936	exon2	c.G256A	p.D86N	CAGCATCATGCAC	.	PASS	Atlas-SNP
AMELX	265	hgsc.bcm.edu	37	X	11316742	11316742	+	Silent	SNP	C	C	T	rs2106416	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	69	54	0	0.985714	0	C|0.765;T|0.235	0.235	strong	.	AMELX	31	.	NM_182680	exon6	c.C261T	p.H87H	ACAGCACCCCCCG	.	PASS	Atlas-SNP
ETFDH	2110	hgsc.bcm.edu	37	4	159629589	159629589	+	Silent	SNP	T	T	C	rs141180629	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	41	84	0	0.482353	0	T|1.000;C|0.000	0.000	strong	.	ETFDH	57	.	NM_004453	exon13	c.T1764C	p.H588H	TGTACATTGTAAA	.	PASS	Atlas-SNP
USP6	9098	hgsc.bcm.edu	37	17	5044794	5044794	+	Missense_Mutation	SNP	G	G	A	rs2304449	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	111	232	0	0.45679	0	G|0.940;A|0.060	0.060	strong	.	USP6	213	.	NM_004505	exon15	c.G1573A	p.V525I	CAAAAGGGTAAGT	.	PASS	Atlas-SNP
ELMO3	79767	hgsc.bcm.edu	37	16	67234197	67234197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	5	119	0	0.0413223	0	.	.	none	.	ELMO3	41	.	NM_024712	exon5	c.T505C	p.F169L	ATGATCTTTGCCA	.	PASS	Atlas-SNP
KLF14	136259	hgsc.bcm.edu	37	7	130418525	130418525	+	Silent	SNP	G	G	A	rs76603546	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	10	5	0	0.833333	0	G|0.582;A|0.418	0.418	strong	.	KLF14	15	.	NM_138693	exon1	c.C336T	p.S112S	GAAGCCGGACGAG	.	PASS	Atlas-SNP
F11	2160	hgsc.bcm.edu	37	4	187201211	187201211	+	Silent	SNP	A	A	G	rs5974	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	74	70	0	1	0	A|0.837;G|0.163	0.163	strong	F11,colon,carcinoma,+1,1	F11	65	1	NM_000128	exon8	c.A801G	p.T267T	CAGTACACGCATT	.	PASS	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	37	9	96407953	96407953	+	Silent	SNP	G	G	A	rs35505758	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	34	42	0	0.492754	0	G|0.980;A|0.020	0.020	strong	.	PHF2	113	.	NM_005392	exon4	c.G342A	p.T114T	GCTCACGCTGGGC	.	PASS	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	37	19	1811603	1811603	+	Missense_Mutation	SNP	C	C	T	rs7250872	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	24	66	0	0.55814	0	C|0.614;T|0.386	0.386	strong	.	ATP8B3	108	.	NM_138813	exon2	c.G133A	p.G45R	CACCTCCGCGGAT	.	PASS	Atlas-SNP
ACAA2	10449	hgsc.bcm.edu	37	18	47318626	47318626	+	Missense_Mutation	SNP	T	T	C	rs11549285	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	93	147	0	0.547059	0	T|0.970;C|0.030	0.030	strong	.	ACAA2	29	.	NM_006111	exon6	c.A649G	p.M217V	CCTGCATTGTCTG	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123780005	123780005	+	Silent	SNP	G	G	A	rs25681	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	44	95	0	0.435644	0	G|0.644;A|0.356	0.356	strong	C5,colon,carcinoma,0,1	C5	124	1	NM_001735	exon13	c.C1632T	p.Y544Y	GACGATGTAATAG	.	PASS	Atlas-SNP
NEK2	4751	hgsc.bcm.edu	37	1	211846876	211846876	+	Silent	SNP	A	A	G	rs701929	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	76	227	0	0.422222	0	A|0.463;G|0.537	0.537	strong	.	NEK2	49	.	NM_002497	exon3	c.T504C	p.H168H	CGTGTCATGGTTT	.	PASS	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	37	1	18807781	18807781	+	Silent	SNP	C	C	T	rs35013594	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	68	120	0	0.515152	0	C|0.899;T|0.101	0.101	strong	.	KLHDC7A	60	.	NM_152375	exon1	c.C306T	p.G102G	AAGAGGCCCCTAT	.	PASS	Atlas-SNP
MFF	56947	hgsc.bcm.edu	37	2	228197238	228197238	+	Silent	SNP	G	G	A	rs11557342	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	99	226	1	0.44	0.00442478	G|0.922;A|0.078	0.078	strong	MFF,NS,carcinoma,0,1	MFF	48	1	NM_020194	exon5	c.G363A	p.T121T	ACTTACGCTGAGT	.	scavenged	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279584	1279584	+	Silent	SNP	T	T	C	rs71384641		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	67	120	1	0.957143	0.00833333	C|1.000;|0.000	1.000	weak	.	TPSB2	8	.	NM_024164	exon3	c.A216G	p.A72A	GTGCGCTGCGGTC	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	37	2	228131752	228131752	+	Silent	SNP	G	G	A	rs34019152	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	24	81	0	0.413793	0	G|0.905;A|0.095	0.095	strong	.	COL4A3	293	.	NM_000091	exon23	c.G1452A	p.G484G	CCCAGGGCCTCCC	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364476	5364476	+	Silent	SNP	C	C	T	rs61738485	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	25	35	0	0.490196	0	C|0.885;T|0.115	0.115	strong	OR51B5,NS,carcinoma,-1,1	OR51B5	60	1	NM_001005567	exon5	c.G279A	p.A93A	GCAGGCCGCACTT	.	PASS	Atlas-SNP
OLFML1	283298	hgsc.bcm.edu	37	11	7507182	7507182	+	Missense_Mutation	SNP	A	A	G	rs118163706	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	132	223	1	0.643902	0.00448431	A|0.959;G|0.041	0.041	strong	.	OLFML1	54	.	NM_198474	exon1	c.A76G	p.T26A	CAGTGTACCCAGG	.	PASS	Atlas-SNP
C4orf40	401137	hgsc.bcm.edu	37	4	71024466	71024466	+	Missense_Mutation	SNP	C	C	T	rs201012961	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	26	139	0	0.230089	0	C|0.999;T|0.001	0.001	weak	.	C4orf40	19	.	NM_214711	exon3	c.C497T	p.A166V	TTGGAGCTGAGCC	.	PASS	Atlas-SNP
OXER1	165140	hgsc.bcm.edu	37	2	42990101	42990101	+	Missense_Mutation	SNP	G	G	C	rs2278586	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	49	100	0	0.471154	0	G|0.738;C|0.261	0.261	strong	OXER1,brain,glioma,0,1	OXER1	33	1	NM_148962	exon1	c.C1219G	p.L407V	CTTTCAGCTTCCC	.	PASS	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23527724	23527724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	6	145	5	0.0359281	0.0344828	.	.	none	PRDM9,trunk,malignant_melanoma,0,2	PRDM9	344	2	NM_020227	exon11	c.A2527G	p.N843D	TTTCGCAATAAGT	.	scavenged	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150908813	150908813	+	Missense_Mutation	SNP	G	G	A	rs2304024	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	57	126	0	0.542857	0	G|0.858;N|0.001	.	strong	.	FAT2	465	.	NM_001447	exon14	c.C9952T	p.R3318W	GGGGCCGGTGTTC	.	PASS	Atlas-SNP
RRP7A	27341	hgsc.bcm.edu	37	22	42912097	42912097	+	Missense_Mutation	SNP	C	C	T	rs11553441	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	47	77	0	0.522222	0	C|0.893;T|0.107	0.107	strong	.	RRP7A	25	.	NM_015703	exon3	c.G262A	p.V88I	ACTCTACAGACTG	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139164192	139164192	+	Silent	SNP	G	G	A	rs3750306	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	34	81	0	0.377778	0	G|0.665;A|0.335	0.335	strong	.	FAM135B	423	.	NM_015912	exon13	c.C2526T	p.P842P	GTATCCGGGGCCC	.	PASS	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	37	13	53608632	53608632	+	Silent	SNP	C	C	T	rs2298231	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	52	90	0	0.509804	0	C|0.494;T|0.506	0.506	strong	.	OLFM4	94	.	NM_006418	exon2	c.C354T	p.S118S	ACTTTCCAAAGTA	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	6	78	2	0.0645161	0.025641	.	.	weak	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	614	2	NM_002457	exon30	c.G5212A	p.G1738S	CCCACCGGCACAC	.	scavenged	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17083778	17083778	+	Silent	SNP	C	C	T	rs78612194	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	318	121	356	8	0.380503	0.0224719	C|0.312;T|0.688	0.688	strong	Q13209_HUMAN,NS,carcinoma,0,1	.	.	1	NM_001271733	exon15	c.G2019A	p.T673T	GACACGCGTGAAG	.	scavenged	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	37	17	648186	648186	+	Missense_Mutation	SNP	G	G	A	rs7813	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	81	0	1	0	G|0.315;A|0.685	0.685	strong	.	GEMIN4	116	.	NM_015721	exon2	c.C3097T	p.R1033C	AGAAGCGCTGCTC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036505	33036505	+	Silent	SNP	G	G	C	rs1042434	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	64	187	0	0.323232	0	G|0.663;C|0.337	0.337	strong	.	HLA-DPA1	20	.	NM_033554	exon4	c.C705G	p.V235V	GATGCCGACTAGG	.	PASS	Atlas-SNP
IGFLR1	79713	hgsc.bcm.edu	37	19	36230767	36230767	+	Missense_Mutation	SNP	A	A	G	rs34562867	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	29	67	0	0.460317	0	T|0.000;G|0.091;A|0.909	0.091	strong	.	IGFLR1	28	.	NM_024660	exon4	c.T565C	p.W189R	TGGGCCAGCAGAG	.	PASS	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	50183042	50183042	+	Missense_Mutation	SNP	G	G	A	rs61733240	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	66	151	0	0.44898	0	G|0.901;A|0.099	0.099	strong	.	WDFY4	205	.	NM_020945	exon58	c.G9064A	p.A3022T	CTGCCCGCCCATC	.	PASS	Atlas-SNP
KLK2	3817	hgsc.bcm.edu	37	19	51381777	51381777	+	Missense_Mutation	SNP	C	C	T	rs198977	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	67	153	0	0.478571	0	C|0.708;T|0.292	0.292	strong	.	KLK2	66	.	NM_005551	exon5	c.C748T	p.R250W	CATTACCGGAAGT	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1266561	1266561	+	Silent	SNP	G	G	A	rs200970694	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	277	32	423	1	0.115523	0.00236407	G|0.989;A|0.011	0.011	strong	MUC5B,NS,carcinoma,0,2	MUC5B	473	2	NM_002458	exon31	c.G8451A	p.R2817R	CAGCAGGACCACC	.	scavenged	Atlas-SNP
ANKLE2	23141	hgsc.bcm.edu	37	12	133331537	133331537	+	Missense_Mutation	SNP	G	G	A	rs1132375	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	89	93	0	0.988889	0	G|0.716;A|0.284	0.284	strong	.	ANKLE2	76	.	NM_015114	exon2	c.C364T	p.H122Y	CATGGTGGTAGAA	.	PASS	Atlas-SNP
CTU2	348180	hgsc.bcm.edu	37	16	88779739	88779739	+	Missense_Mutation	SNP	A	A	G	rs11549837	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	56	82	0	0.523364	0	A|0.607;G|0.393	0.393	strong	.	CTU2	66	.	NM_001012759	exon8	c.A757G	p.M253V	CTCCACATGGCCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105405942	105405942	+	Silent	SNP	G	G	A	rs28454709	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	72	0	1	0	G|0.467;A|0.533	0.533	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C15846T	p.L5282L	AGTGGAGAGGTGC	.	PASS	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167096931	167096931	+	Missense_Mutation	SNP	A	A	C	rs267746	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	45	68	0	0.523256	0	A|0.780;C|0.220	0.220	strong	.	DUSP27	235	.	NM_001080426	exon5	c.A2563C	p.K855Q	GAGTACAAAATGG	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44159849	44159849	+	Silent	SNP	T	T	C	rs17576165	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	183	160	1	0.994565	0.00625	T|0.854;C|0.146	0.146	strong	.	.	.	.	NM_001193466	exon4	c.A1491G	p.P497P	ACTAAGTGGAAGA	.	PASS	Atlas-SNP
RBM33	155435	hgsc.bcm.edu	37	7	155531080	155531080	+	Missense_Mutation	SNP	A	A	G	rs3735576	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	38	73	0	0.520548	0	A|0.633;G|0.367	0.367	strong	.	RBM33	157	.	NM_053043	exon11	c.A1720G	p.T574A	ACACACACACAGC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037579	33037579	+	Missense_Mutation	SNP	A	A	T	rs36013091	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	48	167	0	0.358209	0	.	.	alt	.	HLA-DPA1	20	.	NM_033554	exon2	c.T185A	p.M62K	TAGAACATCTCAT	.	PASS	Atlas-SNP
CCDC38	120935	hgsc.bcm.edu	37	12	96312686	96312686	+	Missense_Mutation	SNP	C	C	A	rs12368787	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	55	129	0	0.410448	0	C|0.915;A|0.085	0.085	strong	.	CCDC38	45	.	NM_182496	exon3	c.G106T	p.V36F	CTTTGACAAGAAA	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	37	18	74672741	74672741	+	Silent	SNP	C	C	T	rs72987221	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	39	74	0	0.565217	0	C|0.955;T|0.045	0.045	strong	.	ZNF236	325	.	NM_007345	exon30	c.C5343T	p.A1781A	GTGTGCCTACTGC	.	PASS	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	37	7	34085921	34085921	+	Missense_Mutation	SNP	G	G	A	rs74734392	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	60	79	0	0.588235	0	G|0.987;A|0.013	0.013	strong	.	BMPER	131	.	NM_133468	exon8	c.G580A	p.G194S	TAGGGAGGCAGGA	.	PASS	Atlas-SNP
EIF4E	1977	hgsc.bcm.edu	37	4	99808254	99808254	+	Silent	SNP	G	G	A	rs62323192	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	120	256	1	0.454545	0.00390625	G|0.819;A|0.181	0.181	strong	EIF4E,NS,carcinoma,0,1	EIF4E	18	1	NM_001130678	exon5	c.C435T	p.D145D	ATCGAGGTCACTT	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13867949	13867949	+	Silent	SNP	T	T	C	rs146191243	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	96	158	0	0.551724	0	T|0.990;C|0.010	0.010	strong	.	DNAH5	868	.	NM_001369	exon25	c.A3987G	p.K1329K	AAGCTCTTTCTTG	.	PASS	Atlas-SNP
FUK	197258	hgsc.bcm.edu	37	16	70506907	70506907	+	Silent	SNP	T	T	C	rs7192865	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	112	83	0	0.99115	0	T|0.402;C|0.598	0.598	strong	FUK,NS,carcinoma,0,1	FUK	72	1	NM_145059	exon15	c.T1428C	p.P476P	GGACCCTGAGACG	.	PASS	Atlas-SNP
MRPL23	6150	hgsc.bcm.edu	37	11	1977552	1977552	+	Missense_Mutation	SNP	G	G	A	rs12812	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	20	39	0	0.434783	0	G|0.874;A|0.126	0.126	strong	MRPL23,NS,carcinoma,0,1	MRPL23	14	1	NM_021134	exon5	c.G364A	p.A122T	GGCAGCGCTGCCG	.	PASS	Atlas-SNP
GNAZ	2781	hgsc.bcm.edu	37	22	23438191	23438191	+	Silent	SNP	C	C	T	rs1805058	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	27	35	0	0.72973	0	C|0.762;T|0.238	0.238	strong	GNAZ,NS,carcinoma,0,2	GNAZ	45	2	NM_002073	exon2	c.C309T	p.D103D	CTACGACGCTGTG	.	PASS	Atlas-SNP
TTLL6	284076	hgsc.bcm.edu	37	17	46878625	46878625	+	Silent	SNP	A	A	G	rs17634167	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	48	119	0	0.436364	0	A|0.923;G|0.077	0.077	strong	.	TTLL6	113	.	NM_001130918	exon5	c.T603C	p.L201L	AGCAGGAAGACAC	.	PASS	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	37	3	172835290	172835290	+	Missense_Mutation	SNP	C	C	T	rs1515441	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	283	142	301	0	0.501767	0	C|0.831;T|0.169	0.169	strong	SPATA16,NS,carcinoma,+2,1	SPATA16	111	1	NM_031955	exon2	c.G232A	p.E78K	CTTTCTCTAAATC	.	PASS	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	37	1	66036441	66036441	+	Missense_Mutation	SNP	A	A	G	rs1137100	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	34	81	0	0.419753	0	A|0.705;G|0.295	0.295	strong	.	LEPR	284	.	NM_001003680	exon4	c.A326G	p.K109R	AAGGAAAGACATT	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39465389	39465389	+	Silent	SNP	T	T	A	rs12451604	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	46	106	0	0.484211	0	T|0.764;A|0.236	0.236	strong	.	KRTAP16-1	12	.	NM_001146182	exon1	c.A117T	p.T39T	CTGCCATGTCTGG	.	PASS	Atlas-SNP
LRBA	987	hgsc.bcm.edu	37	4	151388906	151388906	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	241	101	226	0	0.419087	0	.	.	none	.	LRBA	253	.	NM_006726	exon45	c.A6732G	p.P2244P	AAACACTGGATAC	.	PASS	Atlas-SNP
EGLN1	54583	hgsc.bcm.edu	37	1	231557164	231557164	+	Missense_Mutation	SNP	C	C	G	rs61750991	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	13	11	17	0	0.846154	0	C|0.988;G|0.012	0.012	strong	.	EGLN1	38	.	NM_022051	exon1	c.G471C	p.Q157H	CTTCTCCTGGAAC	.	PASS	Atlas-SNP
POU2F3	25833	hgsc.bcm.edu	37	11	120175749	120175749	+	Missense_Mutation	SNP	A	A	G	rs7110845	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	125	145	0	0.968992	0	A|0.260;G|0.740	0.740	strong	POU2F3,NS,carcinoma,+1,1	POU2F3	44	1	NM_001244682	exon7	c.A461G	p.H154R	TTGGGCACCCTGG	.	PASS	Atlas-SNP
TAS2R14	50840	hgsc.bcm.edu	37	12	11091693	11091693	+	Silent	SNP	T	T	A	rs7138535	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	46	90	0	0.647887	0	T|0.766;A|0.234	0.234	strong	.	TAS2R14	26	.	NM_023922	exon1	c.A114T	p.G38G	CTTTCTTCCCTTG	.	PASS	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	37	7	20421490	20421490	+	Silent	SNP	T	T	C	rs2230398	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	45	58	0	0.555556	0	A|0.000;C|0.395;G|0.000;T|0.605	0.395	strong	ITGB8_ENST00000222573,NS,carcinoma,0,1	ITGB8	159	1	NM_002214	exon6	c.T942C	p.Y314Y	CGTCTATGTCAAA	.	PASS	Atlas-SNP
TTYH2	94015	hgsc.bcm.edu	37	17	72233559	72233559	+	Missense_Mutation	SNP	G	G	A	rs62621376	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	37	100	0	0.352381	0	G|0.751;A|0.249	0.249	strong	.	TTYH2	63	.	NM_032646	exon4	c.G541A	p.V181I	GGCAGCGTTGTTG	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	182993025	182993025	+	Silent	SNP	C	C	T	rs10911194	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	50	124	0	0.458716	0	C|0.512;T|0.488	0.488	strong	.	LAMC1	176	.	NM_002293	exon1	c.C174T	p.A58A	CGCCGCCTTCAAC	.	PASS	Atlas-SNP
CD8A	925	hgsc.bcm.edu	37	2	87017662	87017662	+	Silent	SNP	G	G	T	rs2229239	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	21	41	0	0.617647	0	G|0.932;T|0.068	0.068	strong	.	CD8A	28	.	NM_001145873	exon5	c.C192A	p.A64A	ACTGGCGGCGGCG	.	PASS	Atlas-SNP
CD22	933	hgsc.bcm.edu	37	19	35836530	35836530	+	Missense_Mutation	SNP	G	G	A	rs10406069	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	38	69	0	0.558824	0	G|0.855;A|0.145	0.145	strong	.	CD22	129	.	NM_001771	exon12	c.G2234A	p.G745D	CTGAAGGCCCCCA	.	PASS	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	37	19	2138654	2138654	+	Silent	SNP	T	T	G	rs25672	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	70	78	0	1	0	T|0.695;G|0.304;N|0.000;A|0.000	0.304	strong	.	AP3D1	81	.	NM_001261826	exon2	c.A156C	p.I52I	CACCGCTATGTTG	.	PASS	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	37	12	53086645	53086645	+	Missense_Mutation	SNP	G	G	A	rs3782489	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	209	192	0	1	0	G|0.631;A|0.369	0.369	strong	.	KRT77	58	.	NM_175078	exon6	c.C1100T	p.T367M	CCTGCCGTGATCT	.	PASS	Atlas-SNP
TGFBR3	7049	hgsc.bcm.edu	37	1	92185657	92185657	+	Silent	SNP	C	C	T	rs1805112	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	79	60	0	1	0	C|0.620;T|0.380	0.380	strong	TGFBR3,bladder,carcinoma,-1,1	TGFBR3	103	1	NM_003243	exon9	c.G1206A	p.P402P	AGGAAACGGAAGG	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72344553	72344553	+	Silent	SNP	G	G	A	rs7227391	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	58	117	0	0.5	0	G|0.907;A|0.093	0.093	strong	.	ZNF407	231	.	NM_001146190	exon1	c.G1578A	p.T526T	TCAGACGTTGTGT	.	PASS	Atlas-SNP
TPSG1	25823	hgsc.bcm.edu	37	16	1272655	1272655	+	Missense_Mutation	SNP	C	C	T	rs117769620	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	53	130	0	0.481818	0	C|0.995;T|0.005	0.005	strong	.	TPSG1	19	.	NM_012467	exon4	c.G508A	p.G170R	CACCTCCCTCCCG	.	PASS	Atlas-SNP
NDUFS2	4720	hgsc.bcm.edu	37	1	161183516	161183516	+	Silent	SNP	C	C	T	rs1136207	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	74	119	0	0.468354	0	C|0.862;T|0.138	0.138	strong	.	NDUFS2	33	.	NM_001166159	exon12	c.C1290T	p.A430A	TTTTGCCCATCTG	.	PASS	Atlas-SNP
MPHOSPH10	10199	hgsc.bcm.edu	37	2	71360144	71360144	+	Missense_Mutation	SNP	A	A	C	rs10199088	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	92	164	0	0.538012	0	A|0.666;C|0.334	0.334	strong	.	MPHOSPH10	81	.	NM_005791	exon2	c.A206C	p.E69A	TGATAGAAAATTT	.	PASS	Atlas-SNP
ZNF658	26149	hgsc.bcm.edu	37	9	40772563	40772563	+	Silent	SNP	G	G	A	rs77619302	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	112	201	0	0.583333	0	G|0.814;A|0.186	0.186	strong	ZNF658,NS,carcinoma,-1,1	ZNF658	100	1	NM_033160	exon5	c.C2712T	p.R904R	CCCTGAGCGAGTT	.	scavenged	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	37	13	53422553	53422553	+	Missense_Mutation	SNP	A	A	G	rs3742301	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	6	14	0	0.352941	0	A|0.769;G|0.231	0.231	strong	.	PCDH8	95	.	NM_002590	exon1	c.T19C	p.W7R	TGCCCCAACGCCT	.	PASS	Atlas-SNP
CPT1C	126129	hgsc.bcm.edu	37	19	50209653	50209653	+	Silent	SNP	C	C	T	rs12978911	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	46	110	0	0.45098	0	C|0.898;T|0.102	0.102	strong	.	CPT1C	93	.	NM_001199752	exon12	c.C1326T	p.A442A	GCTGGCCGGCCGG	.	PASS	Atlas-SNP
FAM167A	83648	hgsc.bcm.edu	37	8	11301601	11301601	+	Missense_Mutation	SNP	G	G	C	rs3021512	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	87	170	0	0.414286	0	G|0.854;C|0.146	0.146	strong	.	FAM167A	21	.	NM_053279	exon2	c.C320G	p.T107S	TTGCCAGTGGACA	.	PASS	Atlas-SNP
ENOSF1	55556	hgsc.bcm.edu	37	18	712568	712568	+	Missense_Mutation	SNP	G	G	A	rs3786349	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	6	5	11	0	0.833333	0	G|0.851;A|0.149	0.149	strong	.	ENOSF1	44	.	NM_017512	exon1	c.C20T	p.S7F	AGCCGGGAGATCC	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79385719	79385719	+	Silent	SNP	G	G	A	rs6851427	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	31	66	0	0.455882	0	G|0.682;A|0.318	0.318	strong	.	FRAS1	779	.	NM_025074	exon49	c.G7011A	p.A2337A	TAAGGCGGTGGAT	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158592847	158592847	+	Missense_Mutation	SNP	G	G	A	rs78394850	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	86	206	0	0.421569	0	G|0.959;A|0.041	0.041	strong	SPTA1,colon,carcinoma,+1,3	SPTA1	720	3	NM_003126	exon43	c.C6046T	p.R2016C	CCCAGCGCTTCAG	.	PASS	Atlas-SNP
LILRB4	11006	hgsc.bcm.edu	37	19	55177358	55177358	+	Missense_Mutation	SNP	C	C	T	rs200475774	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	60	146	0	0.472441	0	C|0.999;T|0.001	0.001	weak	LILRB4,NS,carcinoma,0,2	LILRB4	86	2	NM_006847	exon7	c.C850T	p.R284C	CACTGGCGTCAGG	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	37	4	13604418	13604418	+	Missense_Mutation	SNP	G	G	C	rs17745712	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	126	201	0	0.59434	0	G|0.848;C|0.152	0.152	strong	.	.	.	.	NM_148894	exon10	c.C4106G	p.A1369G	TGGTGAGCTTCTG	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47808679	47808679	+	Missense_Mutation	SNP	C	C	T	rs7279204	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	40	86	0	0.434783	0	C|0.883;T|0.117	0.117	strong	PCNT,face,carcinoma,-1,1	PCNT	283	1	NM_006031	exon18	c.C3487T	p.R1163C	GCCCTGCGCAGGC	.	PASS	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	37	2	202264156	202264156	+	Missense_Mutation	SNP	C	C	T	rs13022344	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	71	125	0	0.529851	0	C|0.463;T|0.537	0.537	strong	.	TRAK2	62	.	NM_015049	exon5	c.G424A	p.V142I	ATAAGACATGGTT	.	PASS	Atlas-SNP
MMS19	64210	hgsc.bcm.edu	37	10	99220707	99220707	+	Missense_Mutation	SNP	C	C	T	rs3740526	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	65	125	0	0.454545	0	C|0.642;T|0.358	0.358	strong	MMS19,NS,carcinoma,0,1	MMS19	36	1	NM_022362	exon24	c.G2369A	p.G790D	CCAGAGCCCAGGC	.	PASS	Atlas-SNP
DHRS4	10901	hgsc.bcm.edu	37	14	24424367	24424367	+	Silent	SNP	G	G	A	rs12147221	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	218	129	194	0	0.591743	0	G|0.796;A|0.204	0.204	strong	.	DHRS4	22	.	NM_021004	exon2	c.G252A	p.T84T	CGTGACGGGCACC	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87484382	87484382	+	Missense_Mutation	SNP	C	C	T	rs2306265	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	17	62	0	0.386364	0	C|0.981;T|0.019	0.019	strong	GRID1,NS,carcinoma,0,1	GRID1	204	1	NM_017551	exon11	c.G1585A	p.V529I	CCACAACGCTCTC	.	PASS	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	37	16	17353202	17353202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	4	191	0	0.0152672	0	.	.	none	XYLT1,right_lower_lobe,carcinoma,0,1	XYLT1	147	1	NM_022166	exon3	c.C556T	p.P186S	TACTCGGTGGCTT	.	scavenged	Atlas-SNP
P2RY14	9934	hgsc.bcm.edu	37	3	150931811	150931811	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	3	134	0	0.0217391	0	.	.	none	P2RY14,NS,carcinoma,0,1	P2RY14	50	1	NM_014879	exon3	c.C294T	p.A98A	GAGCACGGCAGAG	.	scavenged	Atlas-SNP
KLHL2	11275	hgsc.bcm.edu	37	4	166231868	166231868	+	Silent	SNP	A	A	G	rs28678193	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	133	202	1	0.549587	0.00495049	A|0.593;G|0.407	0.407	strong	.	KLHL2	42	.	NM_001161521	exon10	c.A1215G	p.L405L	TGGATTATTATAC	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3200877	3200877	+	Silent	SNP	C	C	T	rs2161752	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	93	195	0	0.41704	0	C|0.853;T|0.147	0.147	strong	CSMD1_ENST00000537824,colon,carcinoma,0,4	CSMD1	1469	4	NM_033225	exon23	c.G3570A	p.L1190L	TAGCCACAGGTGA	.	PASS	Atlas-SNP
WDR18	57418	hgsc.bcm.edu	37	19	984554	984554	+	Silent	SNP	C	C	G	rs4806884	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	13	4	33	0	0.307692	0	C|0.614;G|0.386	0.386	strong	.	WDR18	20	.	NM_024100	exon1	c.C201G	p.L67L	GGAGCTCCAGCGG	.	PASS	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	37	19	36258842	36258842	+	Missense_Mutation	SNP	G	G	C	rs231217	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	15	33	0	0.428571	0	G|0.901;C|0.099	0.099	strong	.	C19orf55	39	.	NM_001039887	exon9	c.G1095C	p.K365N	AGTCAAGGCCTCG	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4933939	4933939	+	Missense_Mutation	SNP	G	G	C	rs2037912	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	87	161	0	0.47027	0	G|0.581;C|0.419	0.419	strong	.	PPL	168	.	NM_002705	exon22	c.C4717G	p.Q1573E	GGTTTTGCCTCTC	.	PASS	Atlas-SNP
SNRPD3	6634	hgsc.bcm.edu	37	22	24964128	24964128	+	Silent	SNP	T	T	C	rs4597	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	62	102	0	1	0	A|0.000;C|0.725;T|0.275	0.725	strong	.	SNRPD3	12	.	NM_004175	exon3	c.T303C	p.A101A	AGCTGCTATTCTC	.	PASS	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	37	1	46493460	46493460	+	Missense_Mutation	SNP	T	T	G	rs1707336	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	52	114	0	0.468468	0	G|0.474;N|0.000	0.474	strong	.	MAST2	136	.	NM_015112	exon17	c.T1977G	p.I659M	CAAAATTGGCCTC	.	PASS	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	37	12	121416622	121416622	+	Silent	SNP	C	C	G	rs1169289	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	63	169	0	0.4375	0	G|0.405;C|0.595	0.405	strong	HNF1A,NS,carcinoma,0,1	HNF1A	302	1	NM_000545	exon1	c.C51G	p.L17L	CCTGCTCGAGTCA	.	PASS	Atlas-SNP
CHDH	55349	hgsc.bcm.edu	37	3	53857676	53857676	+	Silent	SNP	C	C	T	rs17053532	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	11	14	0	0.333333	0	C|0.905;T|0.095	0.095	strong	.	CHDH	34	.	NM_018397	exon3	c.G360A	p.L120L	CCAGTACAGCACG	.	PASS	Atlas-SNP
ZKSCAN4	387032	hgsc.bcm.edu	37	6	28219695	28219695	+	Missense_Mutation	SNP	G	G	A	rs62638680	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	39	65	0	0.402062	0	G|0.968;A|0.032	0.032	strong	.	ZKSCAN4	42	.	NM_019110	exon1	c.C64T	p.L22F	TCAGGAGCCCCGT	.	PASS	Atlas-SNP
DEF6	50619	hgsc.bcm.edu	37	6	35280252	35280252	+	Silent	SNP	G	G	A	rs142511424		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	3	137	0	0.0241935	0	G|1.000;A|0.000	0.000	weak	DEF6,right_lower_lobe,carcinoma,+2,1	DEF6	36	1	NM_022047	exon4	c.G597A	p.R199R	GGGCCGGGACACC	.	scavenged	Atlas-SNP
ZNF780A	284323	hgsc.bcm.edu	37	19	40580426	40580426	+	Silent	SNP	A	A	G	rs399405	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	90	190	0	0.452261	0	A|0.899;G|0.101	0.101	strong	.	ZNF780A	156	.	NM_001142577	exon6	c.T1926C	p.S642S	CATTCAAGATGCC	.	PASS	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106967185	106967185	+	Missense_Mutation	SNP	A	A	C	rs1159148	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	24	56	0	0.393443	0	A|0.787;C|0.213	0.213	strong	.	AIM1	161	.	NM_001624	exon2	c.A878C	p.Q293P	GAGGCCAAAGGAA	.	PASS	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	37	8	133192449	133192449	+	Silent	SNP	A	A	G	rs41272387	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	33	73	0	0.52381	0	A|0.951;G|0.049	0.049	strong	.	KCNQ3	164	.	NM_004519	exon4	c.T732C	p.G244G	GGTGCCACCTCTC	.	PASS	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	37	11	129754668	129754668	+	Silent	SNP	T	T	C	rs2303662	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	36	96	0	0.433735	0	T|0.849;C|0.151	0.151	strong	.	NFRKB	101	.	NM_006165	exon5	c.A789G	p.T263T	TGAAAGTGTGGGC	.	PASS	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	37	16	49672520	49672520	+	Silent	SNP	A	A	G	rs3803665	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	57	96	0	0.53271	0	A|0.440;G|0.560	0.560	strong	.	ZNF423	463	.	NM_015069	exon4	c.T543C	p.R181R	CCGGTCACGGCTC	.	PASS	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	37	17	26919894	26919894	+	Missense_Mutation	SNP	C	C	T	rs34977204	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	55	144	0	0.458333	0	C|0.994;T|0.006	0.006	strong	.	SPAG5	92	.	NM_006461	exon3	c.G368A	p.G123D	TAATTGCCCAGTG	.	PASS	Atlas-SNP
LCP2	3937	hgsc.bcm.edu	37	5	169685163	169685163	+	Silent	SNP	C	C	T	rs315717	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	60	123	0	0.540541	0	C|0.429;T|0.571	0.571	strong	.	LCP2	133	.	NM_005565	exon16	c.G978A	p.Q326Q	AGGTCTCTGATGC	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64580061	64580061	+	Silent	SNP	C	C	T	rs114604397	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	20	58	0	0.37037	0	C|0.993;T|0.007	0.007	strong	.	SYNE2	577	.	NM_182914	exon66	c.C12612T	p.G4204G	TTAGGGCACCACA	.	PASS	Atlas-SNP
OR51G2	81282	hgsc.bcm.edu	37	11	4936613	4936613	+	Missense_Mutation	SNP	G	G	T	rs16907312	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	46	64	0	0.528736	0	G|0.831;T|0.169	0.169	strong	OR51G2,NS,carcinoma,0,1	OR51G2	70	1	NM_001005238	exon1	c.C281A	p.A94E	TCTCGTGCTCCAA	.	PASS	Atlas-SNP
ABHD8	79575	hgsc.bcm.edu	37	19	17412366	17412366	+	Silent	SNP	G	G	A	rs11086066	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	63	49	0	0.984375	0	G|0.784;A|0.216	0.216	strong	.	ABHD8	26	.	NM_024527	exon2	c.C60T	p.A20A	CCCCACGGCGTTG	.	PASS	Atlas-SNP
FES	2242	hgsc.bcm.edu	37	15	91428290	91428290	+	Silent	SNP	C	C	T	rs11539637	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	13	33	0	0.464286	0	C|0.473;T|0.527	0.527	strong	.	FES	102	.	NM_001143783	exon1	c.C15T	p.S5S	CTCTTCCGAGCTG	.	PASS	Atlas-SNP
CHST13	166012	hgsc.bcm.edu	37	3	126261345	126261345	+	Missense_Mutation	SNP	G	G	A	rs1056522	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	57	103	0	0.463415	0	G|0.655;A|0.345	0.345	strong	.	CHST13	21	.	NM_152889	exon3	c.G950A	p.R317Q	ACCAGCGGCGCCT	.	PASS	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	37	17	43552717	43552717	+	Silent	SNP	G	G	C	rs147243132	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	276	259	309	0	0.938406	0	G|0.873;C|0.127	0.127	strong	PLEKHM1,caecum,carcinoma,-1,1	PLEKHM1	69	1	NM_014798	exon4	c.C672G	p.S224S	AGAATGGGAAATG	.	PASS	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	37	6	102503317	102503317	+	Silent	SNP	G	G	A	rs2227283	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	41	73	0	0.569444	0	A|0.381;C|0.006	0.381	strong	.	GRIK2	487	.	NM_021956	exon15	c.G2424A	p.E808E	AGAGGAGAGCAAA	.	PASS	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	37	1	15616139	15616139	+	Missense_Mutation	SNP	G	G	A	rs486557	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	35	69	0	0.507246	0	G|0.777;A|0.223	0.223	strong	.	FHAD1	78	.	NM_052929	exon4	c.G545A	p.R182H	ACGCCCGCAAGCC	.	PASS	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	37	22	19197896	19197896	+	Silent	SNP	T	T	C	rs698423	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	60	125	0	0.46875	0	T|0.225;C|0.775	0.775	strong	.	CLTCL1	115	.	NM_001835	exon20	c.A3189G	p.A1063A	ATACAGTGCGCTG	.	PASS	Atlas-SNP
NLRP13	126204	hgsc.bcm.edu	37	19	56416409	56416409	+	Silent	SNP	G	G	A	rs28506091	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	75	139	0	0.539568	0	G|0.922;A|0.078	0.078	strong	.	NLRP13	220	.	NM_176810	exon8	c.C2517T	p.H839H	AGTTACGTGTTGG	.	PASS	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93641199	93641199	+	Silent	SNP	T	T	C	rs2306040	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	50	88	0	0.458716	0	T|0.908;C|0.092	0.092	strong	.	SYK	132	.	NM_003177	exon11	c.T1545C	p.L515L	CGGACTTTCCAAA	.	PASS	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	37	21	47703649	47703649	+	Silent	SNP	G	G	A	rs11702450	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	45	128	0	0.412844	0	G|0.699;A|0.301	0.301	strong	.	MCM3AP	146	.	NM_003906	exon2	c.C1323T	p.N441N	AGGGATGTTCTTG	.	PASS	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	37	11	17531146	17531146	+	Silent	SNP	G	G	A	rs17776775	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	18	39	0	0.486486	0	A|0.048;G|0.952	0.048	strong	.	USH1C	157	.	NM_153676	exon18	c.C1770T	p.A590A	GGATGAGGCGCTC	.	PASS	Atlas-SNP
NOLC1	9221	hgsc.bcm.edu	37	10	103920475	103920475	+	Missense_Mutation	SNP	T	T	C	rs1049455	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	56	111	0	0.448	0	T|0.797;C|0.203	0.203	strong	.	NOLC1	61	.	NM_004741	exon10	c.T1366C	p.S456P	GCTCTATCTCTGC	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2422177	2422177	+	Missense_Mutation	SNP	G	G	A	rs735911	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	33	90	0	0.402439	0	G|0.896;A|0.104	0.104	strong	.	TMPRSS9	79	.	NM_182973	exon13	c.G2378A	p.S793N	CCGTGAGCACCAC	.	PASS	Atlas-SNP
MAN1B1	11253	hgsc.bcm.edu	37	9	140002995	140002995	+	Silent	SNP	C	C	T	rs118117962	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	71	155	0	0.455128	0	C|0.968;T|0.032	0.032	strong	MAN1B1,NS,carcinoma,0,1	MAN1B1	40	1	NM_016219	exon13	c.C2052T	p.Y684Y	TGCCTACGTGTTC	.	PASS	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	37	5	80382675	80382675	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	25	75	0	0.423729	0	.	.	none	.	RASGRF2	165	.	NM_006909	exon9	c.C1293T	p.S431S	AGTCAGCGACACT	.	PASS	Atlas-SNP
SHROOM2	357	hgsc.bcm.edu	37	X	9914947	9914947	+	Missense_Mutation	SNP	G	G	C	rs2073942	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	35	54	0	1	0	0|0.003;C|0.476	0.476	strong	.	SHROOM2	139	.	NM_001649	exon10	c.G4821C	p.L1607F	CTTATTGGACAGC	.	PASS	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	37	14	44974189	44974189	+	Missense_Mutation	SNP	C	C	A	rs11621923	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	50	60	0	0.78125	0	C|0.624;A|0.376	0.376	strong	FSCB,NS,carcinoma,0,1	FSCB	173	1	NM_032135	exon1	c.G2002T	p.A668S	CTTCAGCGGGGGC	.	PASS	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	37	5	52229745	52229745	+	Missense_Mutation	SNP	T	T	G	rs12520591	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	83	133	0	0.479769	0	T|0.931;G|0.069	0.069	strong	.	ITGA1	112	.	NM_181501	exon23	c.T2883G	p.I961M	CCACATTTCAATT	.	PASS	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	37	22	28378688	28378688	+	Missense_Mutation	SNP	C	C	G	rs9613558	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	78	133	0	0.478528	0	C|0.927;G|0.073	0.073	strong	.	TTC28	84	.	NM_001145418	exon23	c.G6967C	p.A2323P	AGAGAGCTGGGGA	.	PASS	Atlas-SNP
SRPK1	6732	hgsc.bcm.edu	37	6	35803103	35803103	+	Missense_Mutation	SNP	C	C	T	rs35124200	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	65	110	0	0.541667	0	C|0.996;T|0.004	0.004	strong	.	SRPK1	61	.	NM_003137	exon16	c.G1946A	p.R649Q	GGGTGCCGGAGAC	.	PASS	Atlas-SNP
MS4A14	84689	hgsc.bcm.edu	37	11	60182970	60182970	+	Missense_Mutation	SNP	A	A	T	rs7131283	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	82	214	0	0.463277	0	A|0.376;T|0.624	0.624	strong	.	MS4A14	120	.	NM_001261828	exon6	c.A628T	p.N210Y	GAAGAAAATGATC	.	PASS	Atlas-SNP
PSMB9	5698	hgsc.bcm.edu	37	6	32826233	32826233	+	Silent	SNP	A	A	G	rs20547	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	60	0	1	0	A|0.938;G|0.062	0.062	strong	PSMB9_ENST00000453265,NS,carcinoma,+2,2	PSMB9	16	2	NM_002800	exon5	c.A483G	p.A161A	TGCAGCATATAAG	.	PASS	Atlas-SNP
DPYSL2	1808	hgsc.bcm.edu	37	8	26441477	26441477	+	Silent	SNP	G	G	A	rs11786691	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	56	102	0	0.57732	0	G|0.903;A|0.097	0.097	strong	.	DPYSL2	49	.	NM_001197293	exon3	c.G606A	p.L202L	GGCCCTGGCTGGG	.	PASS	Atlas-SNP
HOXB13	10481	hgsc.bcm.edu	37	17	46805443	46805443	+	Silent	SNP	A	A	G	rs9900627	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	53	85	0	0.546392	0	A|0.892;G|0.108	0.108	strong	.	HOXB13	28	.	NM_006361	exon1	c.T513C	p.S171S	AGCCCAAGACTGG	.	PASS	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31770477	31770477	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	2	112	0	0.0149254	0	.	.	none	TSHZ3_ENST00000240587,colon,carcinoma,0,1	TSHZ3	549	1	NM_020856	exon2	c.C222T	p.S74S	TGACTCGCTGTCC	.	scavenged	Atlas-SNP
ERMP1	79956	hgsc.bcm.edu	37	9	5805741	5805741	+	Silent	SNP	C	C	T	rs35643913	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	45	74	0	0.424528	0	C|0.995;T|0.005	0.005	strong	.	ERMP1	63	.	NM_024896	exon9	c.G1593A	p.S531S	AAACAGCGAAATG	.	PASS	Atlas-SNP
FPR1	2357	hgsc.bcm.edu	37	19	52249947	52249947	+	Missense_Mutation	SNP	C	C	G	rs2070745	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	74	103	1	0.5	0.00970874	C|0.644;G|0.356	0.356	strong	FPR1,colon,carcinoma,0,2	FPR1	64	2	NM_001193306	exon3	c.G301C	p.V101L	TAAAGACGAATTT	.	scavenged	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241828012	241828012	+	Silent	SNP	T	T	C	rs6708304	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	42	87	0	0.451613	0	T|0.464;C|0.536	0.536	strong	C2orf54,colon,carcinoma,0,1	C2orf54	14	1	NM_001085437	exon4	c.A948G	p.E316E	CTGCAGTTCTGCC	.	PASS	Atlas-SNP
CES1	1066	hgsc.bcm.edu	37	16	55862712	55862712	+	Missense_Mutation	SNP	C	C	T	rs2307240	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	36	92	0	0.288	0	C|0.956;T|0.044	0.044	strong	.	CES1	78	.	NM_001025195	exon2	c.G227A	p.S76N	ACAAAGCTCCATG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152277345	152277345	+	Silent	SNP	C	C	T	rs2065956	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	110	212	0	0.491071	0	C|0.843;T|0.157	0.157	strong	.	FLG	900	.	NM_002016	exon3	c.G10017A	p.Q3339Q	ACTGGCCTGACTA	.	PASS	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	37	6	17688798	17688798	+	Silent	SNP	G	G	A	rs1065057	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	64	109	0	0.547009	0	G|0.720;C|0.000;N|0.000;A|0.279	0.279	strong	.	NUP153	116	.	NM_005124	exon2	c.C163T	p.L55L	TTTGTAGCCACCC	.	PASS	Atlas-SNP
KRT23	25984	hgsc.bcm.edu	37	17	39084504	39084504	+	Missense_Mutation	SNP	T	T	C	rs9257	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	79	135	0	0.475904	0	T|0.485;C|0.515	0.515	strong	.	KRT23	59	.	NM_015515	exon6	c.A907G	p.T303A	ACTGTGTCTGCAG	.	PASS	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	37	9	111660851	111660851	+	Missense_Mutation	SNP	C	C	T	rs2230792	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	29	67	0	0.537037	0	T|0.207;G|0.122;C|0.615;A|0.056	0.207	strong	.	IKBKAP	122	.	NM_003640	exon22	c.G2294A	p.G765E	ACATTTCCAAGAA	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1252369	1252369	+	Missense_Mutation	SNP	C	C	T	rs61734410	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	17	40	0	0.435897	0	C|0.556;T|0.444	0.444	strong	CACNA1H_ENST00000358590,bladder,carcinoma,-1,2	CACNA1H	317	2	NM_021098	exon9	c.C1919T	p.P640L	GTGGACCGCCAGG	.	PASS	Atlas-SNP
ZNF230	7773	hgsc.bcm.edu	37	19	44515514	44515514	+	Missense_Mutation	SNP	C	C	A	rs12753	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	41	82	0	0.518987	0	C|0.807;A|0.193	0.193	strong	ZNF230,NS,carcinoma,0,2	ZNF230	44	2	NM_006300	exon5	c.C1323A	p.D441E	AGGAGACCACAAT	.	PASS	Atlas-SNP
TMCO6	55374	hgsc.bcm.edu	37	5	140021482	140021482	+	Silent	SNP	C	C	T	rs11554680	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	69	148	0	0.552	0	C|0.757;T|0.243	0.243	strong	TMCO6,NS,carcinoma,+1,1	TMCO6	30	1	NM_018502	exon4	c.C342T	p.V114V	CCTGGTCGGGCTC	.	PASS	Atlas-SNP
PRDM2	7799	hgsc.bcm.edu	37	1	14105298	14105298	+	Silent	SNP	G	G	A	rs1203678	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	57	146	0	0.483051	0	G|0.681;N|0.000	.	strong	.	PRDM2	147	.	NM_015866	exon8	c.G1008A	p.E336E	CTCAGAGGTAACA	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	37	15	56207983	56207983	+	Silent	SNP	C	C	T	rs7174459	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	30	44	0	0.461538	0	C|0.791;T|0.209	0.209	strong	.	NEDD4	167	.	NM_198400	exon1	c.G1047A	p.S349S	CTGTAACGAGCCC	.	PASS	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	37	13	111082772	111082772	+	Missense_Mutation	SNP	G	G	T	rs62621885	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	45	91	0	0.428571	0	G|0.991;T|0.009	0.009	strong	.	COL4A2	178	.	NM_001846	exon9	c.G574T	p.V192F	GGATTGGTCGGTT	.	PASS	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	37	7	7514235	7514235	+	Missense_Mutation	SNP	C	C	G	rs6952195	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	33	100	0	0.434211	0	C|0.712;G|0.288	0.288	strong	COL28A1,NS,carcinoma,0,1	COL28A1	113	1	NM_001037763	exon15	c.G1299C	p.E433D	TACCTTCTCCCCT	.	PASS	Atlas-SNP
HOXA1	3198	hgsc.bcm.edu	37	7	27135319	27135319	+	Silent	SNP	G	G	A	rs2074398		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	36	42	0	0.62069	0	.	.	weak	.	HOXA1	64	.	NM_153620	exon1	c.C213T	p.H71H	GCGATGGTGGTGG	.	PASS	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	37	12	53091566	53091566	+	Missense_Mutation	SNP	C	C	A	rs1567759	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	186	178	0	0.994652	0	C|0.593;A|0.407	0.407	strong	KRT77,colon,carcinoma,0,1	KRT77	58	1	NM_175078	exon2	c.G658T	p.G220C	GGTCACCGATGTA	.	PASS	Atlas-SNP
NCOA7	135112	hgsc.bcm.edu	37	6	126210395	126210395	+	Missense_Mutation	SNP	T	T	G	rs6919947	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	40	35	0	1	0	T|0.507;G|0.493	0.493	strong	.	NCOA7	92	.	NM_001199619	exon10	c.T1195G	p.S399A	ACTTCTTCTGCAT	.	PASS	Atlas-SNP
GXYLT1	283464	hgsc.bcm.edu	37	12	42491379	42491379	+	Silent	SNP	T	T	A	rs139072942	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	36	70	0	0.444444	0	T|0.994;A|0.006	0.006	strong	Q8IXV1_HUMAN,NS,carcinoma,-1,2	GXYLT1	47	2	NM_173601	exon7	c.A1026T	p.R342R	ATCTGGTCGATAA	.	PASS	Atlas-SNP
HLA-DQB2	3120	hgsc.bcm.edu	37	6	32726772	32726772	+	Silent	SNP	G	G	A	rs200147031		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	33	179	0	0.169231	0	.	.	weak	HLA-DQB2,NS,carcinoma,-2,4	HLA-DQB2	22	4	NM_001198858	exon3	c.C501T	p.A167A	AACACCGGCTGTC	.	PASS	Atlas-SNP
DDX19A	55308	hgsc.bcm.edu	37	16	70395387	70395387	+	Silent	SNP	C	C	T	rs1134074	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	20	51	0	0.363636	0	C|0.732;T|0.268	0.268	strong	.	DDX19A	39	.	NM_018332	exon5	c.C360T	p.N120N	AGAGAACGCATTA	.	PASS	Atlas-SNP
MVB12B	89853	hgsc.bcm.edu	37	9	129143435	129143435	+	Silent	SNP	A	A	G	rs2286889	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	18	38	0	0.580645	0	A|0.895;G|0.105	0.105	strong	.	.	.	.	NM_001011703	exon3	c.A297G	p.S99S	AAGATCATTTTCC	.	PASS	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	37	9	78938043	78938043	+	Missense_Mutation	SNP	G	G	A	rs2495207	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	37	107	0	0.393617	0	G|0.668;A|0.332	0.332	strong	.	PCSK5	329	.	NM_001190482	exon31	c.G4097A	p.R1366H	ACTCGCGCCACTG	.	PASS	Atlas-SNP
NDNF	79625	hgsc.bcm.edu	37	4	121958691	121958691	+	Silent	SNP	T	T	C	rs3733559	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	65	97	0	0.53719	0	T|0.796;C|0.204	0.204	strong	NDNF,colon,carcinoma,-2,1	NDNF	72	1	NM_024574	exon4	c.A435G	p.L145L	CTGATATAAACCG	.	PASS	Atlas-SNP
C1orf177	163747	hgsc.bcm.edu	37	1	55307501	55307501	+	Silent	SNP	A	A	G	rs41297871	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	44	75	0	0.571429	0	A|0.737;G|0.263	0.263	strong	.	C1orf177	36	.	NM_001110533	exon10	c.A1212G	p.G404G	TAAGGGAAAGTGC	.	PASS	Atlas-SNP
NCOA4	8031	hgsc.bcm.edu	37	10	51582894	51582894	+	Silent	SNP	C	C	T	rs41306524	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	35	75	0	0.460526	0	C|0.904;T|0.096	0.096	strong	.	NCOA4	58	.	NM_001145261	exon8	c.C717T	p.D239D	CACCGACCCCCAG	.	PASS	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	37	20	62591460	62591460	+	Silent	SNP	G	G	A	rs45570933	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	29	83	0	0.446154	0	G|0.955;A|0.045	0.045	strong	.	ZNF512B	72	.	NM_020713	exon17	c.C2460T	p.P820P	GTGTTTGGGAGGT	.	PASS	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	37	19	15298031	15298031	+	Silent	SNP	C	C	T	rs79926127	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	88	167	0	0.470588	0	T|0.007;C|0.993	0.007	strong	.	NOTCH3	340	.	NM_000435	exon11	c.G1725A	p.T575T	TGTGCCCGTGTAG	.	PASS	Atlas-SNP
GTF2H4	2968	hgsc.bcm.edu	37	6	30881103	30881103	+	Silent	SNP	C	C	A	rs1132408	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	218	200	1	0.990909	0.005	C|0.980;A|0.020	0.020	strong	.	GTF2H4	38	.	NM_001517	exon13	c.C1155A	p.P385P	GCCCCCCACCATC	.	PASS	Atlas-SNP
ZNF215	7762	hgsc.bcm.edu	37	11	6953858	6953858	+	Missense_Mutation	SNP	A	A	G	rs11041108	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	54	71	0	0.509434	0	A|0.721;G|0.279	0.279	strong	.	ZNF215	72	.	NM_013250	exon3	c.A355G	p.M119V	AAAGATATGGTGA	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73072354	73072354	+	Missense_Mutation	SNP	T	T	C	rs7714670	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	78	131	0	0.506494	0	C|0.364;N|0.001	0.364	strong	NP_001073948_1,NS,carcinoma,0,2	.	.	2	NM_001080479	exon6	c.T673C	p.W225R	GGCAGATGGTCCC	.	PASS	Atlas-SNP
GALNT9	50614	hgsc.bcm.edu	37	12	132688115	132688115	+	Missense_Mutation	SNP	C	C	T	rs11246991	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	63	110	0	0.520661	0	C|0.918;T|0.082	0.082	strong	GALNT9_ENST00000535228,NS,carcinoma,+2,3	GALNT9	74	3	NM_001122636	exon7	c.G1198A	p.A400T	CGGCGGCGCGCAG	.	PASS	Atlas-SNP
TMEM161A	54929	hgsc.bcm.edu	37	19	19230868	19230868	+	Silent	SNP	A	A	G	rs756791	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	79	148	0	0.446328	0	A|0.145;G|0.855	0.855	strong	.	TMEM161A	37	.	NM_017814	exon12	c.T1311C	p.A437A	ACCCAGAGCCCCG	.	PASS	Atlas-SNP
CEP63	80254	hgsc.bcm.edu	37	3	134225969	134225969	+	Silent	SNP	T	T	C	rs9827878	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	57	113	0	0.57	0	T|0.841;C|0.159	0.159	strong	.	CEP63	56	.	NM_001042383	exon3	c.T63C	p.C21C	ATCTTGTGAAGCA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418275	105418275	+	Silent	SNP	T	T	C	rs2819441	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	57	224	0	0.387755	0	C|0.267;T|0.733	0.267	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A3513G	p.P1171P	GAACGATGGCATC	.	PASS	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	37	12	63954300	63954300	+	Missense_Mutation	SNP	C	C	T	rs12314553	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	68	142	0	0.435897	0	C|0.836;T|0.164	0.164	strong	.	DPY19L2	97	.	NM_173812	exon22	c.G2269A	p.V757I	AGTTAACCTTTAA	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536886	88536886	+	Silent	SNP	C	C	T	rs370521615		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	22	180	0	0.147651	0	.	.	weak	DSPP,NS,carcinoma,0,3	DSPP	174	3	NM_014208	exon5	c.C3072T	p.S1024S	CAATAGCAGTGAC	.	PASS	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	37	1	145533175	145533175	+	Silent	SNP	T	T	C	rs11590105	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	76	0	1	0	T|0.762;C|0.238	0.238	strong	.	ITGA10	131	.	NM_003637	exon11	c.T1270C	p.L424L	CCTGCATTGCAGA	.	PASS	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	37	15	81212521	81212521	+	Silent	SNP	T	T	C	rs2271160	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	57	110	0	0.513514	0	T|0.844;C|0.156	0.156	strong	KIAA1199,NS,carcinoma,0,1	KIAA1199	118	1	NM_018689	exon14	c.T1884C	p.C628C	CCACTGTCTTGGC	.	PASS	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	37	2	107423395	107423395	+	Silent	SNP	T	T	G	rs1470590	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	32	56	0	0.516129	0	T|0.514;G|0.486	0.486	strong	.	ST6GAL2	159	.	NM_032528	exon6	c.A1329C	p.I443I	CATCATTATGAGG	.	PASS	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	37	12	56718422	56718422	+	Silent	SNP	T	T	C	rs11171803	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	100	141	0	0.531915	0	T|0.960;C|0.040	0.040	strong	.	PAN2	107	.	NM_014871	exon11	c.A1671G	p.A557A	CTCACATGCCAGA	.	PASS	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	37	2	102791086	102791086	+	Missense_Mutation	SNP	C	C	T	rs28362304	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	34	112	0	0.369565	0	C|0.985;T|0.015	0.015	strong	.	IL1R1	52	.	NM_000877	exon9	c.C1031T	p.T344M	GTGTCACGTTGAC	.	PASS	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	37	17	78936339	78936339	+	Silent	SNP	G	G	A	rs17848671	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	62	105	0	0.455882	0	G|0.999;A|0.001	0.001	strong	.	RPTOR	122	.	NM_020761	exon32	c.G3771A	p.T1257T	GCTGACGGCCCTG	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	37	6	38980081	38980081	+	Missense_Mutation	SNP	A	A	G	rs10484847	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	41	108	0	0.418367	0	A|0.890;G|0.110	0.110	strong	DNAH8_ENST00000359357,NS,carcinoma,-1,2	DNAH8	1239	2	NM_001206927	exon90	c.A13462G	p.I4488V	ATTTCAATACTCC	.	PASS	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	37	3	49831032	49831032	+	Missense_Mutation	SNP	A	A	G	rs115485248	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	44	127	0	0.44	0	A|0.999;G|0.001	0.001	strong	.	CDHR4	37	.	NM_001007540	exon12	c.T1607C	p.I536T	ATGGTAATGGTAC	.	PASS	Atlas-SNP
RBM4B	83759	hgsc.bcm.edu	37	11	66436255	66436255	+	Missense_Mutation	SNP	C	C	T	rs149014922	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	3	100	0	0.0234375	0	C|1.000;T|0.000	0.000	strong	RBM4B,NS,carcinoma,-1,1	RBM4B	27	1	NM_031492	exon3	c.G920A	p.R307H	GCACGACGCAGTG	.	scavenged	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49445028	49445028	+	Missense_Mutation	SNP	G	G	A	rs75226229	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	50	116	0	0.480769	0	G|0.971;A|0.029	0.029	strong	.	MLL2	1173	.	NM_003482	exon10	c.C2438T	p.P813L	AGGTGCGGCTCCT	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32137447	32137447	+	Silent	SNP	C	C	T	rs3759300	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	71	149	0	0.572581	0	C|0.883;T|0.117	0.117	strong	.	.	.	.	NM_018169	exon4	c.C3558T	p.P1186P	AGTACCCCAGTGT	.	PASS	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	37	4	38775040	38775040	+	Silent	SNP	A	A	G	rs10776483	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	44	86	0	0.578947	0	A|0.738;G|0.262	0.262	strong	.	TLR10	87	.	NM_001017388	exon2	c.T2172C	p.H724H	AATTATATGATCA	.	PASS	Atlas-SNP
TH	7054	hgsc.bcm.edu	37	11	2190951	2190951	+	Missense_Mutation	SNP	C	C	T	rs6356	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	160	133	0	0.993789	0	C|0.652;T|0.348	0.348	strong	.	TH	43	.	NM_199292	exon3	c.G334A	p.V112M	TTAGCACGGCCTT	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39264690	39264690	+	Missense_Mutation	SNP	T	T	C	rs2496425	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	43	96	1	0.494253	0.0104167	T|0.546;C|0.454	0.454	strong	FREM2,colon,carcinoma,0,1	FREM2	385	1	NM_207361	exon1	c.T3209C	p.F1070S	AAATCTTTGTAGG	.	scavenged	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	37	11	55563602	55563602	+	Missense_Mutation	SNP	G	G	A	rs68042892	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	258	129	294	0	0.5	0	G|0.896;A|0.104	0.104	strong	OR5D14,NS,carcinoma,0,1	OR5D14	116	1	NM_001004735	exon1	c.G571A	p.G191S	GTGTCTGGCTCTG	.	PASS	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	6	25	4	0.142857	0.16	.	.	none	KCNN3,NS,carcinoma,+1,3	KCNN3	141	3	NM_001204087	exon1	c.T197A	p.L66H	TGCTGAAGCTGCG	.	scavenged	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	37	18	59810563	59810563	+	Silent	SNP	A	A	G	rs34227891	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	112	205	0	0.546341	0	A|0.789;G|0.211	0.211	strong	PIGN,NS,carcinoma,0,1	PIGN	62	1	NM_176787	exon11	c.T939C	p.N313N	CTTCCAATTCTCC	.	PASS	Atlas-SNP
RSPO3	84870	hgsc.bcm.edu	37	6	127476516	127476516	+	Silent	SNP	G	G	A	rs1892172	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	81	152	0	0.496933	0	G|0.455;A|0.545	0.545	strong	RSPO3,rectum,carcinoma,0,1	RSPO3	32	1	NM_032784	exon4	c.G567A	p.L189L	TAACCTGTGTCCC	.	PASS	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	37	1	86965419	86965419	+	Silent	SNP	T	T	C	rs1882753	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	33	90	0	0.492537	0	T|0.690;C|0.310	0.310	strong	.	CLCA1	109	.	NM_001285	exon14	c.T2436C	p.T812T	TACTACTGCTCTC	.	PASS	Atlas-SNP
PTGS1	5742	hgsc.bcm.edu	37	9	125143792	125143792	+	Silent	SNP	C	C	A	rs5788	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	88	218	0	0.465608	0	C|0.722;A|0.278	0.278	strong	PTGS1,NS,carcinoma,0,1	PTGS1	84	1	NM_000962	exon6	c.C639A	p.G213G	TTCTGGCAAGATG	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39253956	39253956	+	Silent	SNP	G	G	A	rs76327324	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	18	77	0	0.276923	0	G|0.500;A|0.500	0.500	strong	KRTAP4-8,NS,carcinoma,0,1	KRTAP4-8	57	1	NM_031960	exon1	c.C381T	p.P127P	GCAGCTGGGGCGG	.	scavenged	Atlas-SNP
PNO1	56902	hgsc.bcm.edu	37	2	68388823	68388823	+	Silent	SNP	A	A	G	rs1137930	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	60	118	0	0.508475	0	A|0.731;G|0.269	0.269	strong	.	PNO1	17	.	NM_020143	exon3	c.A366G	p.K122K	TTGTAAAGAAACC	.	PASS	Atlas-SNP
SP2	6668	hgsc.bcm.edu	37	17	45994154	45994154	+	Silent	SNP	G	G	A	rs2229358	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	23	79	0	0.38983	0	G|0.545;A|0.455	0.455	strong	.	SP2	38	.	NM_003110	exon3	c.G717A	p.P239P	AACCCCGCTGTCT	.	PASS	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43269699	43269699	+	Missense_Mutation	SNP	C	C	T	rs7260508	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	16	22	0	0.390244	0	C|0.620;T|0.380	0.380	strong	PSG8_ENST00000404209,NS,carcinoma,-1,2	PSG8	101	2	NM_001130168	exon1	c.G35A	p.R12H	GTGATGCGCTGTG	.	PASS	Atlas-SNP
APOL5	80831	hgsc.bcm.edu	37	22	36122380	36122380	+	Missense_Mutation	SNP	T	T	A	rs41283201	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	36	94	0	0.36	0	T|0.964;A|0.036	0.036	strong	.	APOL5	45	.	NM_030642	exon3	c.T265A	p.S89T	AAAGATTCCATGC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214820299	214820299	+	Silent	SNP	A	A	G	rs3748698	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	43	96	0	0.434343	0	A|0.916;G|0.084	0.084	strong	.	CENPF	321	.	NM_016343	exon13	c.A7386G	p.E2462E	CCAAGAAGCCTGT	.	PASS	Atlas-SNP
GSTO1	9446	hgsc.bcm.edu	37	10	106022789	106022789	+	Missense_Mutation	SNP	C	C	A	rs4925	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	61	67	0	1	0	C|0.778;A|0.222	0.222	strong	GSTO1,NS,carcinoma,0,1	GSTO1	14	1	NM_004832	exon4	c.C419A	p.A140D	ACTATGCTGGCCT	.	PASS	Atlas-SNP
CENPO	79172	hgsc.bcm.edu	37	2	25022598	25022598	+	Missense_Mutation	SNP	A	A	G	rs1550116	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	46	100	0	0.541176	0	A|0.859;G|0.141	0.141	strong	.	CENPO	18	.	NM_024322	exon3	c.A101G	p.Q34R	GTAAACAGTCTGA	.	PASS	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	37	11	2439767	2439767	+	Missense_Mutation	SNP	T	T	C	rs886277	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	102	158	0	0.453333	0	T|0.506;C|0.494	0.494	strong	.	TRPM5	86	.	NM_014555	exon5	c.A704G	p.N235S	AAGGTGTTGGGAT	.	PASS	Atlas-SNP
SERTAD1	29950	hgsc.bcm.edu	37	19	40929363	40929363	+	Missense_Mutation	SNP	T	T	C	rs268687	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	32	102	0	0.351648	0	T|0.444;C|0.556	0.556	strong	.	SERTAD1	18	.	NM_013376	exon2	c.A91G	p.T31A	CCGCTGTGTGGCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412005	105412005	+	Silent	SNP	A	A	G	rs28564728	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	166	0	1	0	A|0.449;G|0.551	0.551	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T9783C	p.D3261D	CGTCACATCCATC	.	PASS	Atlas-SNP
HJURP	55355	hgsc.bcm.edu	37	2	234749354	234749354	+	Missense_Mutation	SNP	G	G	A	rs12582	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	52	79	0	0.525253	0	G|0.846;A|0.154	0.154	strong	.	HJURP	72	.	NM_018410	exon8	c.C2072T	p.S691F	CGTCCGGAGCCCT	.	PASS	Atlas-SNP
GPN2	54707	hgsc.bcm.edu	37	1	27210721	27210721	+	Missense_Mutation	SNP	T	T	C	rs3170660	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	110	120	0	1	0	T|0.213;C|0.787	0.787	strong	.	GPN2	18	.	NM_018066	exon4	c.A790G	p.R264G	GGGCTCTGAAACA	.	PASS	Atlas-SNP
TICAM1	148022	hgsc.bcm.edu	37	19	4816719	4816719	+	Silent	SNP	G	G	A	rs2292151	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	39	53	0	0.6	0	G|0.743;A|0.257	0.257	strong	.	TICAM1	69	.	NM_182919	exon2	c.C1671T	p.D557D	CTCACCGTCCAGG	.	PASS	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	37	7	45009325	45009325	+	Silent	SNP	G	G	A	rs3735484	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	127	1	1	0.00787402	G|0.608;A|0.392	0.392	strong	.	MYO1G	86	.	NM_033054	exon11	c.C1482T	p.H494H	GTGTAGGTGATGG	.	PASS	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105193709	105193709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	110	100	1	1	0.01	.	.	none	.	NRK	321	.	NM_198465	exon27	c.A4496G	p.D1499G	GGAAAGACATACC	.	PASS	Atlas-SNP
WHAMM	123720	hgsc.bcm.edu	37	15	83502065	83502065	+	Missense_Mutation	SNP	A	A	C	rs11259953	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	39	63	0	0.557143	0	A|0.879;C|0.121	0.121	strong	.	WHAMM	63	.	NM_001080435	exon10	c.A2207C	p.H736P	CTCCCCACGCCTC	.	PASS	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	37	X	150349871	150349871	+	Missense_Mutation	SNP	A	A	G	rs13440581	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	20	20	0	1	0	A|0.687;G|0.313	0.313	strong	.	GPR50	195	.	NM_004224	exon2	c.A1816G	p.I606V	GTGGTTATTGATG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179558366	179558366	+	Missense_Mutation	SNP	T	T	C	rs2042995	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	302	136	311	0	0.450331	0	T|0.582;C|0.418	0.418	strong	.	TTN	18412	.	NM_001267550	exon119	c.A31564G	p.I10522V	TGGAAATGGCAAC	.	PASS	Atlas-SNP
OVOL2	58495	hgsc.bcm.edu	37	20	18022362	18022362	+	Silent	SNP	G	G	T	rs6111803	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	27	56	0	0.54	0	G|0.945;T|0.055	0.055	strong	.	OVOL2	18	.	NM_021220	exon3	c.C327A	p.T109T	GCCTGTGGTGAAC	.	PASS	Atlas-SNP
MTRR	4552	hgsc.bcm.edu	37	5	7897061	7897061	+	Silent	SNP	T	T	C	rs6874544	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	292	132	319	0	0.452055	0	T|0.981;C|0.019	0.019	strong	.	MTRR	74	.	NM_024010	exon13	c.T1842C	p.Y614Y	GGATTATCTATTC	.	PASS	Atlas-SNP
DHX29	54505	hgsc.bcm.edu	37	5	54557283	54557283	+	Silent	SNP	G	G	A	rs1052132	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	72	124	0	0.549618	0	G|0.965;A|0.035	0.035	strong	.	DHX29	116	.	NM_019030	exon25	c.C3873T	p.T1291T	AAAAGGGGTTATT	.	PASS	Atlas-SNP
UBN2	254048	hgsc.bcm.edu	37	7	138946316	138946316	+	Silent	SNP	C	C	T	rs377072849		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	2	81	0	0.0190476	0	.	.	weak	UBN2,NS,carcinoma,0,2	UBN2	90	2	NM_173569	exon6	c.C1224T	p.F408F	TGACTTCGACAGA	.	scavenged	Atlas-SNP
PPOX	5498	hgsc.bcm.edu	37	1	161138933	161138933	+	Missense_Mutation	SNP	C	C	G	rs12735723	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	36	57	0	0.493151	0	C|0.994;G|0.006	0.006	strong	.	PPOX	34	.	NM_000309	exon7	c.C767G	p.P256R	GCCAGCCGGTCTG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179451420	179451420	+	Missense_Mutation	SNP	G	G	A	rs2042996	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	84	225	0	0.48	0	G|0.553;N|0.000	.	strong	.	TTN	18412	.	NM_001267550	exon308	c.C64208T	p.T21403I	TAACTAGTGATGT	.	PASS	Atlas-SNP
SKA3	221150	hgsc.bcm.edu	37	13	21735998	21735998	+	Missense_Mutation	SNP	T	T	C	rs17345690	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	68	130	0	0.552846	0	T|0.886;C|0.114	0.114	strong	SKA3,NS,carcinoma,0,1	SKA3	76	1	NM_145061	exon5	c.A760G	p.T254A	ATTCTGTATCTAT	.	PASS	Atlas-SNP
COLEC11	78989	hgsc.bcm.edu	37	2	3685163	3685163	+	Silent	SNP	T	T	C	rs34347618	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	60	155	0	0.413793	0	T|0.961;C|0.039	0.039	strong	COLEC11_ENST00000418971,colon,carcinoma,+1,4	COLEC11	93	4	NM_001255985	exon5	c.T285C	p.R95R	GGGTCGTCATGGA	.	PASS	Atlas-SNP
MTRR	4552	hgsc.bcm.edu	37	5	7878179	7878179	+	Missense_Mutation	SNP	C	C	T	rs1532268	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	50	77	0	0.588235	0	C|0.704;T|0.296	0.296	strong	.	MTRR	74	.	NM_024010	exon5	c.C605T	p.S202L	CATCCTCGAGGAC	.	PASS	Atlas-SNP
ANO8	57719	hgsc.bcm.edu	37	19	17435887	17435887	+	Silent	SNP	C	C	T	rs56286266	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	151	166	0	1	0	C|0.746;T|0.254	0.254	strong	.	ANO8	67	.	NM_020959	exon17	c.G2970A	p.S990S	CCCTGACGAGAGG	.	PASS	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	37	4	23815662	23815662	+	Missense_Mutation	SNP	C	C	T	rs8192678	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	136	124	0	1	0	C|0.724;T|0.276	0.276	strong	.	PPARGC1A	129	.	NM_013261	exon8	c.G1444A	p.G482S	GTTCACCGGTCTT	.	PASS	Atlas-SNP
TRAF4	9618	hgsc.bcm.edu	37	17	27075423	27075423	+	Silent	SNP	C	C	T	rs2070265	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	45	89	0	0.523256	0	C|0.813;T|0.187	0.187	strong	.	TRAF4	20	.	NM_004295	exon5	c.C606T	p.F202F	GGAGTTCGTCTTT	.	PASS	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	37	19	53116949	53116949	+	Missense_Mutation	SNP	T	T	C	rs113015820	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	16	92	0	0.258065	0	T|0.882;C|0.118	0.118	strong	ZNF83,NS,carcinoma,0,1	ZNF83	73	1	NM_018300	exon3	c.A869G	p.K290R	TTACATTTGTAAG	.	PASS	Atlas-SNP
ASB6	140459	hgsc.bcm.edu	37	9	132400480	132400480	+	Silent	SNP	G	G	A	rs3739851	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	46	37	0	1	0	G|0.503;A|0.497	0.497	strong	.	ASB6	31	.	NM_017873	exon6	c.C855T	p.A285A	GTAGGCGGCTCCG	.	PASS	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	37	7	81667468	81667468	+	Silent	SNP	C	C	T	rs2229952	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	55	115	0	0.509259	0	C|0.968;T|0.032	0.032	strong	CACNA2D1,colon,carcinoma,-1,1	CACNA2D1	191	1	NM_000722	exon11	c.G963A	p.A321A	ATTCACCGCGTCT	.	PASS	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	37	2	80529956	80529956	+	Missense_Mutation	SNP	T	T	C	rs6733871	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	177	184	0	1	0	C|0.316;N|0.000	0.316	strong	.	LRRTM1	251	.	NM_178839	exon2	c.A989G	p.N330S	AAGTTGTTGAGCC	.	PASS	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	37	6	40400288	40400288	+	Missense_Mutation	SNP	C	C	T	rs61731040	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	53	108	0	0.427419	0	C|0.890;T|0.110	0.110	strong	.	LRFN2	133	.	NM_020737	exon2	c.G565A	p.A189T	CCTCGGCGATGTG	.	PASS	Atlas-SNP
BMP1	649	hgsc.bcm.edu	37	8	22067022	22067022	+	Silent	SNP	C	C	A	rs77242743	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	62	124	0	0.469697	0	C|0.929;A|0.071	0.071	strong	.	BMP1	131	.	NM_006129	exon19	c.C2640A	p.G880G	GTTTGGCGACAAC	.	PASS	Atlas-SNP
KRT76	51350	hgsc.bcm.edu	37	12	53171001	53171001	+	Silent	SNP	G	G	A	rs11170272	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	34	80	0	0.419753	0	G|0.916;A|0.084	0.084	strong	.	KRT76	72	.	NM_015848	exon1	c.C75T	p.S25S	GCTGCCGGAGACC	.	PASS	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	37	1	91859801	91859801	+	Missense_Mutation	SNP	A	A	G	rs11165778	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	99	253	1	0.428571	0.00395257	A|0.808;G|0.192	0.192	strong	.	HFM1	188	.	NM_001017975	exon4	c.T343C	p.S115P	TATGTGATAAGTC	.	PASS	Atlas-SNP
DSC3	1825	hgsc.bcm.edu	37	18	28611061	28611061	+	Missense_Mutation	SNP	A	A	T	rs276937	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	81	110	0	0.987805	0	A|0.626;T|0.374	0.374	strong	.	DSC3	225	.	NM_024423	exon3	c.T232A	p.S78T	ACACTGACCCATC	.	PASS	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	37	10	69926325	69926325	+	Silent	SNP	C	C	T	rs2673793	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	76	100	0	0.580153	0	C|0.825;T|0.175	0.175	strong	.	MYPN	189	.	NM_032578	exon10	c.C1875T	p.P625P	CAGGCCCGATTCT	.	PASS	Atlas-SNP
SLC22A8	9376	hgsc.bcm.edu	37	11	62766431	62766431	+	Silent	SNP	A	A	T	rs2276299	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	52	57	0	0.468468	0	A|0.839;T|0.161	0.161	strong	.	SLC22A8	60	.	NM_001184732	exon5	c.T723A	p.T241T	GGACACAGTTAAC	.	PASS	Atlas-SNP
ABCB8	11194	hgsc.bcm.edu	37	7	150742408	150742408	+	Missense_Mutation	SNP	G	G	T	rs59397762	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	42	67	0	0.466667	0	G|0.963;T|0.037	0.037	strong	.	ABCB8	65	.	NM_007188	exon16	c.G2129T	p.G710V	CAGAAGGCCCCAG	.	PASS	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	37	1	102296279	102296279	+	Silent	SNP	T	T	C	rs10493973	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	79	158	0	0.484663	0	T|0.824;C|0.176	0.176	strong	.	OLFM3	178	.	NM_058170	exon3	c.A321G	p.K107K	CCGAAATTTTGCC	.	PASS	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	37	19	5456450	5456450	+	Silent	SNP	T	T	C	rs8111108	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	84	86	0	1	0	T|0.315;C|0.685	0.685	strong	.	ZNRF4	59	.	NM_181710	exon1	c.T948C	p.Y316Y	TGAGTATGAGGAG	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189601	11189601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	9	132	0	0.0542169	0	.	.	none	AMAC1L2,NS,carcinoma,-1,1	.	.	1	NM_054028	exon1	c.G986T	p.S329I	ACCTCAGCTGTGA	.	scavenged	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	37	10	134997480	134997480	+	Silent	SNP	C	C	T	rs57510763	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	92	0	0.457143	0	C|0.611;T|0.389	0.389	strong	.	KNDC1	155	.	NM_152643	exon5	c.C612T	p.F204F	GTCCTTCGGAGCG	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10363410	10363410	+	Silent	SNP	A	A	G	rs3744561	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	93	213	0	0.438679	0	A|0.575;G|0.425	0.425	strong	.	MYH4	349	.	NM_017533	exon14	c.T1275C	p.N425N	CACTGCATTGTAC	.	PASS	Atlas-SNP
GPR146	115330	hgsc.bcm.edu	37	7	1097895	1097895	+	Silent	SNP	A	A	G	rs61910751	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	19	23	0	0.633333	0	A|0.893;G|0.106;T|0.000	0.106	strong	.	GPR146	20	.	NM_138445	exon1	c.A744G	p.P248P	GACGCCACACTAT	.	PASS	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	37	7	4874420	4874420	+	Missense_Mutation	SNP	G	G	C	rs2292498	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	73	52	0	1	0	G|0.754;C|0.246	0.246	strong	.	RADIL	110	.	NM_018059	exon4	c.C1234G	p.H412D	CCAGGTGGGGCTC	.	PASS	Atlas-SNP
FCRLA	84824	hgsc.bcm.edu	37	1	161680617	161680617	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	33	90	0	0.428571	0	.	.	none	.	FCRLA	101	.	NM_001184866	exon3	c.G216A	p.E72E	CACGGAGGATGAC	.	PASS	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	37	19	50097784	50097784	+	Silent	SNP	T	T	C	rs10414643	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	31	71	0	0.455882	0	T|0.712;C|0.288	0.288	strong	PRR12_ENST00000418929,NS,carcinoma,0,1	PRR12	157	1	NM_020719	exon3	c.T273C	p.L91L	GAACCTTATCTCG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152282267	152282267	+	Missense_Mutation	SNP	G	G	A	rs12405278	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	100	198	0	0.471698	0	G|0.811;A|0.189	0.189	strong	FLG,colon,carcinoma,+1,1	FLG	900	1	NM_002016	exon3	c.C5095T	p.R1699C	GTCTGCGCCCAGT	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9047305	9047305	+	Silent	SNP	G	G	A	rs10415818	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	44	100	0	0.463158	0	G|0.797;A|0.203	0.203	strong	.	MUC16	4315	.	NM_024690	exon5	c.C34326T	p.H11442H	ACTTGTGTGTGTC	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55595017	55595017	+	Missense_Mutation	SNP	G	G	T	rs117277709		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	29	130	0	0.243697	0	.	.	weak	OR5L2,NS,carcinoma,-1,2	OR5L2	135	2	NM_001004739	exon1	c.G323T	p.G108V	CATGTGGAGTCAC	.	PASS	Atlas-SNP
PJA2	9867	hgsc.bcm.edu	37	5	108713982	108713982	+	Silent	SNP	T	T	C	rs12523186	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	244	232	0	0.99187	0	T|0.606;C|0.394	0.394	strong	.	PJA2	53	.	NM_014819	exon4	c.A1206G	p.A402A	CCTTCCTGCTGTG	.	PASS	Atlas-SNP
LDLR	3949	hgsc.bcm.edu	37	19	11222300	11222300	+	Missense_Mutation	SNP	G	G	A	rs11669576	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	21	27	0	0.525	0	G|0.916;A|0.084	0.084	strong	.	LDLR	72	.	NM_001195798	exon8	c.G1171A	p.A391T	ACGAAGGCCTGCA	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790857	4790857	+	Silent	SNP	A	A	G	rs11033797	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	49	85	0	0.462264	0	A|0.713;G|0.287	0.287	strong	.	OR51F1	60	.	NM_001004752	exon1	c.T291C	p.Y97Y	GCAGCTATATAGA	.	PASS	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	37	2	86352925	86352925	+	Silent	SNP	A	A	G	rs139474497	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	55	93	0	0.544554	0	A|0.991;G|0.009	0.009	strong	.	PTCD3	51	.	NM_017952	exon12	c.A873G	p.V291V	TGATGTATACACA	.	PASS	Atlas-SNP
BOK	666	hgsc.bcm.edu	37	2	242501765	242501765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	26	56	0	0.5	0	.	.	none	.	BOK	16	.	NM_032515	exon3	c.G223A	p.D75N	ACAGGCGATGAGC	.	PASS	Atlas-SNP
UGT2B28	54490	hgsc.bcm.edu	37	4	70146804	70146804	+	Missense_Mutation	SNP	G	G	C	rs72551402		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	112	107	0	0.484848	0	.	.	weak	UGT2B28,NS,carcinoma,0,1	UGT2B28	101	1	NM_053039	exon1	c.G586C	p.V196L	ATACCTGTTGTTA	.	PASS	Atlas-SNP
FBXO34	55030	hgsc.bcm.edu	37	14	55818275	55818275	+	Silent	SNP	A	A	G	rs35342573	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	90	172	0	0.566038	0	A|0.987;G|0.013	0.013	strong	.	FBXO34	61	.	NM_017943	exon2	c.A1167G	p.L389L	AGAGTTAGAGCCG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092624	1092624	+	Silent	SNP	C	C	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	19	251	4	0.0808511	0.0159363	.	.	none	MUC2_ENST00000441003,extremity,malignant_melanoma,+2,2	MUC2	614	2	NM_002457	exon30	c.C4443A	p.T1481T	TCCAACCACCACT	.	scavenged	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	37	16	4164364	4164364	+	Silent	SNP	C	C	T	rs2230738	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	45	132	0	0.405405	0	C|0.761;T|0.239	0.239	strong	.	ADCY9	151	.	NM_001116	exon2	c.G1080A	p.R360R	GGCATGCCTCTTG	.	PASS	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234529552	234529552	+	Silent	SNP	C	C	T	rs2175594	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	53	177	0	0.348684	0	C|0.508;T|0.492	0.492	strong	.	TARBP1	111	.	NM_005646	exon27	c.G4275A	p.A1425A	CCACTCCGCTTGG	.	PASS	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	37	13	111121620	111121620	+	Missense_Mutation	SNP	C	C	T	rs9583500	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	58	192	0	0.376623	0	C|0.812;T|0.188	0.188	strong	.	COL4A2	178	.	NM_001846	exon28	c.C2152T	p.P718S	CCAGGGCCCAGGG	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123150286	123150286	+	Missense_Mutation	SNP	T	T	C	rs6848868	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	70	168	0	0.482759	0	T|0.937;C|0.063	0.063	strong	.	KIAA1109	424	.	NM_015312	exon23	c.T2933C	p.I978T	GTTGTATTCCTGG	.	PASS	Atlas-SNP
MOXD1	26002	hgsc.bcm.edu	37	6	132722527	132722527	+	Silent	SNP	G	G	A	rs77906164	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	6	6	9	0	1	0	G|0.888;A|0.112	0.112	strong	.	MOXD1	136	.	NM_015529	exon1	c.C39T	p.L13L	CCCGGGGAGCAGC	.	PASS	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	37	10	125528048	125528048	+	Silent	SNP	G	G	A	rs1219725	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	17	18	0	0.459459	0	G|0.654;A|0.346	0.346	strong	.	CPXM2	120	.	NM_198148	exon9	c.C1293T	p.Y431Y	CCCTTCGTAGGCC	.	PASS	Atlas-SNP
STAP1	26228	hgsc.bcm.edu	37	4	68447040	68447040	+	Silent	SNP	C	C	T	rs11556615	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	80	0	1	0	T|0.162;G|0.138;C|0.673;A|0.027	0.162	strong	.	STAP1	46	.	NM_012108	exon5	c.C381T	p.N127N	CCAAAACGTGTCA	.	PASS	Atlas-SNP
PSMG4	389362	hgsc.bcm.edu	37	6	3264487	3264487	+	Missense_Mutation	SNP	T	T	C	rs4959786	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	124	137	1	1	0.00729927	A|0.000;C|0.620;T|0.380	0.620	strong	.	PSMG4	23	.	NM_001128592	exon3	c.T295C	p.W99R	GTAGAGTGGGGAT	.	PASS	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	37	17	3848013	3848013	+	Silent	SNP	A	A	C	rs1800911	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	107	129	0	1	0	A|0.610;C|0.390	0.390	strong	.	ATP2A3	148	.	NM_174956	exon10	c.T1272G	p.A424A	GTCCAGAGCCGAG	.	PASS	Atlas-SNP
LLGL2	3993	hgsc.bcm.edu	37	17	73569211	73569211	+	Silent	SNP	C	C	T	rs376055189		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	81	188	0	0.452514	0	.	.	weak	.	LLGL2	155	.	NM_004524	exon20	c.C2577T	p.Y859Y	GGACTACGGGGAG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1087972	1087972	+	Silent	SNP	C	C	T	rs10902088	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	75	130	0	0.46875	0	C|0.712;T|0.288	0.288	strong	.	MUC2	614	.	NM_002457	exon25	c.C3447T	p.N1149N	CATCAACGGCATC	.	PASS	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	37	12	52981442	52981442	+	Missense_Mutation	SNP	C	C	A	rs11170183	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	64	145	0	0.470588	0	C|0.804;A|0.196	0.196	strong	KRT72,caecum,carcinoma,0,2	KRT72	70	2	NM_001146225	exon7	c.G1283T	p.R428L	AGCTTGCGGTAGG	.	PASS	Atlas-SNP
ARPC1B	10095	hgsc.bcm.edu	37	7	98984399	98984399	+	Silent	SNP	C	C	T	rs4765	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	21	56	0	0.318182	0	C|0.757;T|0.243	0.243	strong	.	ARPC1B	41	.	NM_005720	exon3	c.C156T	p.N52N	GCACAACGGGCAG	.	PASS	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	37	1	19610598	19610598	+	Silent	SNP	A	A	G	rs116050237	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	35	74	0	0.432099	0	A|0.973;G|0.027	0.027	strong	.	AKR7A3	30	.	NM_012067	exon6	c.T726C	p.F242F	GCCCTCAAAGTGG	.	PASS	Atlas-SNP
ZBTB42	100128927	hgsc.bcm.edu	37	14	105268104	105268104	+	Silent	SNP	G	G	A	rs10141867	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	59	126	0	0.517544	0	G|0.771;A|0.229	0.229	strong	ZBTB42_ENST00000342537,NS,carcinoma,0,2	ZBTB42	10	2	NM_001137601	exon2	c.G570A	p.L190L	GGACCTGTCGTTG	.	PASS	Atlas-SNP
NEIL3	55247	hgsc.bcm.edu	37	4	178231152	178231152	+	Silent	SNP	C	C	A	rs10013040	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	56	119	0	0.5	0	C|0.815;A|0.184	0.184	strong	.	NEIL3	89	.	NM_018248	exon1	c.C45A	p.R15R	GATTCGCGCGCGG	.	PASS	Atlas-SNP
EFR3A	23167	hgsc.bcm.edu	37	8	132999936	132999936	+	Silent	SNP	A	A	G	rs2270875	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	44	126	0	0.396396	0	A|0.899;G|0.101	0.101	strong	EFR3A,rectum,carcinoma,0,2	EFR3A	96	2	NM_015137	exon18	c.A2052G	p.V684V	GTATGTACCACAA	.	PASS	Atlas-SNP
BCL10	8915	hgsc.bcm.edu	37	1	85733328	85733328	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	4	63	0	0.0597015	0	.	.	none	.	BCL10	39	.	NM_003921	exon3	c.T684C	p.R228R	AACAGTACGTGAT	.	PASS	Atlas-SNP
CDC25B	994	hgsc.bcm.edu	37	20	3783764	3783764	+	Silent	SNP	C	C	T	rs2228464	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	60	108	0	0.48	0	C|0.955;T|0.045	0.045	strong	.	CDC25B	76	.	NM_021873	exon13	c.C1267T	p.L423L	GTGGCCCTATTGA	.	PASS	Atlas-SNP
DOC2B	8447	hgsc.bcm.edu	37	17	6115	6115	+	Silent	SNP	G	G	C	rs61739713	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	98	124	0	1	0	T|0.000;G|0.259;C|0.741	0.741	strong	.	DOC2B	6	.	NM_003585	exon6	c.C819G	p.S273S	CTTGAGGGAGATG	.	PASS	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	37	19	55710074	55710074	+	Missense_Mutation	SNP	G	G	A	rs16986309	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	50	108	0	0.458716	0	G|0.884;A|0.116	0.116	strong	.	PTPRH	139	.	NM_002842	exon8	c.C1627T	p.L543F	CGGTGAGGTGGTA	.	PASS	Atlas-SNP
PSKH2	85481	hgsc.bcm.edu	37	8	87076520	87076520	+	Missense_Mutation	SNP	C	C	A	rs6998760	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	32	68	0	0.542373	0	C|0.705;A|0.295	0.295	strong	PSKH2,NS,carcinoma,0,1	PSKH2	79	1	NM_033126	exon2	c.G526T	p.A176S	GCAGCGCATGCAA	.	PASS	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	37	3	148863151	148863151	+	Silent	SNP	A	A	G	rs11718908	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	53	109	0	0.495327	0	A|0.725;G|0.275	0.275	strong	HPS3,NS,carcinoma,+1,1	HPS3	104	1	NM_032383	exon5	c.A981G	p.T327T	TCTTACATCTGAT	.	PASS	Atlas-SNP
NBPF9	400818	hgsc.bcm.edu	37	1	144619346	144619346	+	Splice_Site	SNP	G	G	A	rs4649563	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	13	47	0	0.325	0	G|0.580;A|0.420	0.420	strong	.	NBPF9	88	.	NM_001037675	exon5	c.492-1G>A	.	TTTATAGAAAATG	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370934	240370934	+	Missense_Mutation	SNP	G	G	C	rs4997328	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	28	161	0	0.197183	0	G|0.781;C|0.219	0.219	strong	FMN2,NS,carcinoma,0,3	FMN2	451	3	NM_020066	exon5	c.G2822C	p.G941A	GAGCGGGAATACC	.	PASS	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53848779	53848779	+	Silent	SNP	T	T	C	rs75887836	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	32	61	0	0.5	0	T|0.880;C|0.120	0.120	strong	.	ZNF845	101	.	NM_138374	exon3	c.T36C	p.D12D	CAGGGATGTGGCC	.	PASS	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	37	4	89300241	89300241	+	Silent	SNP	C	C	A	rs61978650	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	17	33	0	0.708333	0	C|0.875;A|0.125	0.125	strong	.	HERC6	104	.	NM_017912	exon1	c.C168A	p.G56G	GCTGGGCCGCAGG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1081074	1081074	+	Missense_Mutation	SNP	T	T	C	rs41411848	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	60	136	0	0.491803	0	T|0.714;C|0.286	0.286	strong	.	MUC2	614	.	NM_002457	exon11	c.T1370C	p.V457A	TGCAGGTGGTGGT	.	PASS	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109689752	109689752	+	Missense_Mutation	SNP	C	C	T	rs3814541	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	44	106	0	0.483516	0	C|0.898;T|0.102	0.102	strong	.	ZNF462	322	.	NM_021224	exon3	c.C3559T	p.P1187S	GGCCCTCCTGTGG	.	PASS	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35847032	35847032	+	Missense_Mutation	SNP	G	G	A	rs34924462	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	66	164	0	0.515625	0	G|0.979;A|0.021	0.021	strong	.	ZMYM4	143	.	NM_005095	exon8	c.G1354A	p.V452I	AATGCTGTTGTAA	.	PASS	Atlas-SNP
ZADH2	284273	hgsc.bcm.edu	37	18	72914280	72914280	+	Silent	SNP	G	G	A	rs7230037	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	49	61	0	0.462264	0	G|0.687;A|0.313	0.313	strong	.	ZADH2	25	.	NM_175907	exon2	c.C225T	p.N75N	AGATGCGTTAACA	.	PASS	Atlas-SNP
TIGD2	166815	hgsc.bcm.edu	37	4	90035549	90035549	+	Missense_Mutation	SNP	A	A	G	rs2280099	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	76	103	0	0.575758	0	G|0.132;N|0.000	0.132	strong	.	TIGD2	36	.	NM_145715	exon1	c.A1424G	p.H475R	AGAAGCATATTAG	.	PASS	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	37	5	38953634	38953634	+	Missense_Mutation	SNP	G	G	A	rs146765449	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	49	118	0	0.471154	0	G|0.997;A|0.003	0.003	strong	.	RICTOR	182	.	NM_152756	exon28	c.C2719T	p.R907C	CATTACGACAGAG	.	PASS	Atlas-SNP
FCGR1B	2210	hgsc.bcm.edu	37	1	120930088	120930088	+	Missense_Mutation	SNP	C	C	T	rs148290064	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	827	378	812	0	0.457074	0	C|0.994;T|0.006	0.006	strong	.	FCGR1B	14	.	NM_001017986	exon4	c.G513A	p.M171I	CTTTCCCATGCCT	.	PASS	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	37	11	33604885	33604885	+	Silent	SNP	C	C	T	rs2273117	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	29	32	0	0.527273	0	C|0.789;T|0.211	0.211	strong	.	.	.	.	NM_012194	exon10	c.C3513T	p.P1171P	CACAGCCGTGGTG	.	PASS	Atlas-SNP
SAP30BP	29115	hgsc.bcm.edu	37	17	73702135	73702135	+	Silent	SNP	G	G	A	rs56144802	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	8	17	0	0.32	0	G|0.972;A|0.028	0.028	strong	.	SAP30BP	30	.	NM_013260	exon10	c.G708A	p.T236T	CGCCACGTCCACC	.	PASS	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	37	19	23158720	23158720	+	Silent	SNP	A	A	T	rs1836017	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	9	9	0	0.6	0	A|0.887;T|0.113	0.113	strong	.	.	.	.	NM_001267716	exon4	c.T1419A	p.I473I	AGCATGAATTGCC	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114476748	114476748	+	Missense_Mutation	SNP	T	T	A	rs11791445	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	111	258	1	0.484716	0.00387597	T|0.809;A|0.191	0.191	strong	C9orf84_ENST00000374287,NS,adenoma,0,2	C9orf84	207	2	NM_173521	exon15	c.A2200T	p.M734L	TTTGCATCCAACT	.	PASS	Atlas-SNP
MAP3K11	4296	hgsc.bcm.edu	37	11	65373249	65373249	+	Missense_Mutation	SNP	G	G	T	rs145297254	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	41	81	0	0.546667	0	G|0.999;T|0.001	0.001	strong	.	MAP3K11	67	.	NM_002419	exon8	c.C1814A	p.T605K	GGGGGTGTGGAAG	.	PASS	Atlas-SNP
ZNF276	92822	hgsc.bcm.edu	37	16	89799950	89799950	+	Silent	SNP	C	C	T	rs17177891	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	88	163	0	0.423077	0	C|0.932;T|0.068	0.068	strong	ZNF276_ENST00000443381,colon,carcinoma,0,2	ZNF276	70	2	NM_001113525	exon8	c.C1341T	p.G447G	CCGAGGCGCTGAC	.	PASS	Atlas-SNP
EXOC2	55770	hgsc.bcm.edu	37	6	592566	592566	+	Silent	SNP	C	C	T	rs62385137	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	47	72	0	0.494737	0	C|1.000;T|0.000	0.000	weak	EXOC2,colon,carcinoma,-1,1	EXOC2	81	1	NM_018303	exon11	c.G1095A	p.A365A	ACCAGACGCATGA	.	PASS	Atlas-SNP
WDR83OS	51398	hgsc.bcm.edu	37	19	12780179	12780179	+	Silent	SNP	G	G	A	rs62108388	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	35	66	0	0.486111	0	G|0.956;A|0.044	0.044	strong	.	.	.	.	NM_016145	exon1	c.C39T	p.N13N	CACTTTGTTCGGC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511316	195511316	+	Missense_Mutation	SNP	A	A	T	rs79528160		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	329	21	315	3	0.0638298	0.00952381	A|0.500;T|0.500	0.500	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.T7135A	p.S2379T	GACCTGAGGATGC	.	scavenged	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56386118	56386118	+	Silent	SNP	A	A	G	rs2680689	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	54	97	1	0.54	0.0103093	A|0.709;G|0.291	0.291	strong	BZRAP1_ENST00000355701,NS,carcinoma,0,4	BZRAP1	287	4	NM_004758	exon22	c.T4515C	p.D1505D	CTGCTCATCCTCC	.	scavenged	Atlas-SNP
SLC7A9	11136	hgsc.bcm.edu	37	19	33355055	33355055	+	Missense_Mutation	SNP	A	A	G	rs12150889	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	63	109	0	0.504	0	A|0.667;G|0.333	0.333	strong	.	SLC7A9	78	.	NM_001243036	exon4	c.T425C	p.V142A	CAGCCCACATAGA	.	PASS	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	37	22	40417820	40417820	+	Missense_Mutation	SNP	A	A	G	rs5995794	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	17	40	0	0.53125	0	A|0.766;G|0.234	0.234	strong	FAM83F,NS,carcinoma,0,1	FAM83F	29	1	NM_138435	exon4	c.A1306G	p.R436G	CCCGCCAGGCGCT	.	PASS	Atlas-SNP
CASP2	835	hgsc.bcm.edu	37	7	142988726	142988726	+	Silent	SNP	G	G	A	rs4647288	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	47	96	0	0.412281	0	G|0.981;A|0.019	0.019	strong	.	CASP2	55	.	NM_032982	exon2	c.G168A	p.L56L	CGAATTGTTAGAA	.	PASS	Atlas-SNP
EFCAB2	84288	hgsc.bcm.edu	37	1	245245402	245245402	+	Silent	SNP	C	C	T	rs10927387	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	19	70	0	0.395833	0	C|0.661;T|0.339	0.339	strong	EFCAB2,NS,carcinoma,0,1	EFCAB2	19	1	NM_001143943	exon4	c.C201T	p.P67P	AGAACCCACTGGA	.	PASS	Atlas-SNP
GAS7	8522	hgsc.bcm.edu	37	17	9846521	9846521	+	Silent	SNP	G	G	C	rs17339499	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	38	93	0	0.475	0	G|0.811;C|0.189	0.189	strong	.	GAS7	113	.	NM_201433	exon7	c.C648G	p.T216T	AGCCACGGTGCCG	.	PASS	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	37	9	312134	312134	+	Missense_Mutation	SNP	G	G	A	rs11789099	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	69	96	0	0.539062	0	G|0.978;A|0.022	0.022	strong	.	DOCK8	401	.	NM_203447	exon6	c.G709A	p.E237K	CAGGCCGAGCTCT	.	PASS	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	37	6	42995211	42995211	+	Silent	SNP	A	A	G	rs1138141	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	83	173	0	0.525316	0	A|0.725;G|0.275	0.275	strong	.	RRP36	20	.	NM_033112	exon6	c.A639G	p.K213K	CCTGAAAAAATGT	.	PASS	Atlas-SNP
ARSG	22901	hgsc.bcm.edu	37	17	66364749	66364749	+	Silent	SNP	T	T	C	rs1558877	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	58	77	0	0.508772	0	T|0.481;C|0.519	0.519	strong	.	ARSG	55	.	NM_001267727	exon7	c.T765C	p.P255P	CTTACCTGTGACT	.	PASS	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	37	2	210557380	210557380	+	Silent	SNP	C	C	T	rs6720659	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	31	70	0	0.430556	0	C|0.852;T|0.148	0.148	strong	.	MAP2	372	.	NM_002374	exon7	c.C486T	p.H162H	GTTCCACGATCAA	.	PASS	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	37	5	5239921	5239921	+	Silent	SNP	C	C	T	rs11742341	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	40	121	0	0.45977	0	C|0.865;T|0.135	0.135	strong	.	ADAMTS16	543	.	NM_139056	exon16	c.C2406T	p.T802T	CTGGACCGTGGAC	.	PASS	Atlas-SNP
KLK11	11012	hgsc.bcm.edu	37	19	51527364	51527364	+	Missense_Mutation	SNP	G	G	A	rs1048328	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	70	124	0	0.522388	0	G|0.951;A|0.049	0.049	strong	.	KLK11	28	.	NM_144947	exon4	c.C496T	p.R166C	CACAGCGTGAGGA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513590	195513590	+	Missense_Mutation	SNP	C	C	T	rs74192533	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	574	25	539	15	0.043554	0.0278293	CGGTGACAG|0.500;TGGTGACAA|0.500	.	alt	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.G4861A	p.D1621N	AAGTGTCGGTGAC	.	scavenged	Atlas-SNP
CUTA	51596	hgsc.bcm.edu	37	6	33385953	33385953	+	Missense_Mutation	SNP	A	A	G	rs1705003	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	27	44	0	0.55102	0	A|0.825;G|0.175	0.175	strong	CUTA_ENST00000374500,colon,carcinoma,0,1	CUTA	5	1	NM_001014433	exon1	c.T10C	p.S4P	ATCCCGACCCTAT	.	PASS	Atlas-SNP
PVRIG	79037	hgsc.bcm.edu	37	7	99817878	99817878	+	Missense_Mutation	SNP	C	C	T	rs141119008	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	49	58	0	0.556818	0	C|0.995;T|0.005	0.005	strong	.	PVRIG	20	.	NM_024070	exon3	c.C260T	p.T87M	GGACCACGCTGGC	.	PASS	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	37	15	90245174	90245174	+	Missense_Mutation	SNP	T	T	A	rs4287542	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	131	127	0	0.992424	0	T|0.574;A|0.426	0.426	strong	.	WDR93	63	.	NM_020212	exon2	c.T197A	p.L66H	TGAACCTTCTGTT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276772	152276772	+	Missense_Mutation	SNP	C	C	A	rs72697000	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	340	158	320	0	0.464706	0	C|0.842;A|0.158	0.158	strong	.	FLG	900	.	NM_002016	exon3	c.G10590T	p.R3530S	GCTTGTCCTGGGC	.	PASS	Atlas-SNP
ENC1	8507	hgsc.bcm.edu	37	5	73930751	73930751	+	Silent	SNP	C	C	T	rs300239	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	98	117	0	0.989899	0	C|0.367;G|0.000;T|0.633	0.633	strong	.	ENC1	56	.	NM_003633	exon2	c.G1560A	p.K520K	TCCCACCTTGGTC	.	PASS	Atlas-SNP
PRSS58	136541	hgsc.bcm.edu	37	7	141952110	141952110	+	Silent	SNP	G	G	A	rs1052406	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	47	89	0	0.573171	0	G|0.709;A|0.291	0.291	strong	.	PRSS58	41	.	NM_001001317	exon6	c.C657T	p.A219A	AACATCGGCTCTC	.	PASS	Atlas-SNP
C1QTNF2	114898	hgsc.bcm.edu	37	5	159776637	159776637	+	Silent	SNP	C	C	T	rs10053189	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	31	77	0	0.424658	0	C|0.626;T|0.374	0.374	strong	.	C1QTNF2	33	.	NM_031908	exon3	c.G531A	p.K177K	CTCCCCCTTCTTG	.	PASS	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	37	22	28378384	28378384	+	Missense_Mutation	SNP	G	G	C	rs41278845	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	40	59	0	0.512821	0	G|0.947;C|0.053	0.053	strong	.	TTC28	84	.	NM_001145418	exon23	c.C7271G	p.A2424G	GGTGGAGCTCCGT	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241713646	241713646	+	Silent	SNP	A	A	G	rs1063353	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	116	139	0	0.571429	0	A|0.528;G|0.472	0.472	strong	.	KIF1A	152	.	NM_001244008	exon12	c.T991C	p.L331L	GACTCAAGGCTGC	.	PASS	Atlas-SNP
LSP1	4046	hgsc.bcm.edu	37	11	1874404	1874404	+	Silent	SNP	C	C	T	rs2089910	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	32	62	0	0.438356	0	C|0.721;T|0.279	0.279	strong	LSP1_ENST00000311604,rectum,carcinoma,0,1	LSP1	59	1	NM_002339	exon1	c.C30T	p.A10A	GGGTGCCGAGGAG	.	PASS	Atlas-SNP
RPL27A	6157	hgsc.bcm.edu	37	11	8706406	8706406	+	Silent	SNP	T	T	G	rs4670	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	74	210	0	0.43787	0	T|0.877;G|0.123	0.123	strong	.	RPL27A	5	.	NM_000990	exon4	c.T285G	p.T95T	CAAGACTGGGGCT	.	PASS	Atlas-SNP
C17orf82	388407	hgsc.bcm.edu	37	17	59489893	59489893	+	Missense_Mutation	SNP	T	T	C	rs9907379	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	3	3	4	0	1	0	T|0.261;C|0.739	0.739	strong	C17orf82_ENST00000335108,NS,carcinoma,0,2	C17orf82	16	2	NM_203425	exon1	c.T557C	p.L186P	AACTCCTCACAGG	.	scavenged	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	37	5	96315320	96315320	+	Missense_Mutation	SNP	C	C	G	rs61752351	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	58	118	0	0.508772	0	C|0.986;G|0.014	0.014	strong	.	LNPEP	80	.	NM_005575	exon2	c.C498G	p.I166M	ACAGATCAGGCTT	.	PASS	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	37	19	12958697	12958697	+	Silent	SNP	T	T	C	rs2290688	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	45	95	0	0.46875	0	T|0.575;C|0.425	0.425	strong	MAST1_ENST00000251472,NS,carcinoma,0,2	MAST1	214	2	NM_014975	exon7	c.T600C	p.F200F	CGACTTTACCCGC	.	PASS	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	37	1	203743653	203743653	+	Silent	SNP	C	C	T	rs3766748	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	83	213	1	0.494048	0.00469484	C|0.699;T|0.301	0.301	strong	.	LAX1	48	.	NM_017773	exon5	c.C1041T	p.D347D	TGCAGACTTTCAG	.	PASS	Atlas-SNP
OR2W5	441932	hgsc.bcm.edu	37	1	247654498	247654498	+	Silent	SNP	G	G	A	rs61070846	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	124	197	0	0.469697	0	G|0.820;A|0.180	0.180	strong	.	OR2W5	97	.	NM_001004698	exon1	c.G69A	p.L23L	TGGACTGGAGAAA	.	PASS	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	37	9	140079522	140079522	+	Silent	SNP	G	G	A	rs11549106	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	61	94	0	0.54955	0	G|0.814;A|0.186	0.186	strong	.	ANAPC2	57	.	NM_013366	exon4	c.C891T	p.V297V	CCAGCCGACCACC	.	PASS	Atlas-SNP
GABPB2	126626	hgsc.bcm.edu	37	1	151062957	151062957	+	Missense_Mutation	SNP	G	G	A	rs11204774	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	57	130	0	0.478992	0	G|0.910;A|0.090	0.090	strong	.	GABPB2	41	.	NM_144618	exon3	c.G184A	p.V62I	GCAGGTGTTAGCA	.	PASS	Atlas-SNP
SOWAHC	65124	hgsc.bcm.edu	37	2	110373197	110373197	+	Silent	SNP	G	G	A	rs1560884	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	31	64	0	0.476923	0	G|0.728;A|0.272	0.272	strong	.	.	.	.	NM_023016	exon1	c.G1131A	p.K377K	GAAAAAGGCCTCC	.	PASS	Atlas-SNP
CYP2A7	1549	hgsc.bcm.edu	37	19	41383215	41383215	+	Silent	SNP	G	G	C	rs2302986	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	319	148	253	0	0.46395	0	G|0.904;C|0.096	0.096	strong	.	CYP2A7	71	.	NM_000764	exon7	c.C1041G	p.T347T	CATCTTGGTCCGG	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	37	6	168377094	168377094	+	Missense_Mutation	SNP	G	G	A	rs9364375	bycluster;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	25	144	0	0.125	0	G|0.500;A|0.500	0.500	weak	.	.	.	.	NM_001129895	exon1	c.C239T	p.P80L	GTGTGGGGGGAGG	.	PASS	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52540773	52540773	+	Silent	SNP	T	T	C	rs1010553	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	137	147	2	1	0.0136054	T|0.407;C|0.593	0.593	strong	STAB1,trunk,malignant_melanoma,+1,1	STAB1	178	1	NM_015136	exon18	c.T1896C	p.G632G	CAATGGTGTGATC	.	scavenged	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	37	7	83634713	83634713	+	Silent	SNP	A	A	G	rs7804122	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	45	103	0	0.424528	0	A|0.771;G|0.229	0.229	strong	SEMA3A,colon,carcinoma,0,1	SEMA3A	121	1	NM_006080	exon11	c.T1302C	p.I434I	TACGACAATTTGT	.	PASS	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	37	17	16005030	16005030	+	Missense_Mutation	SNP	T	T	C	rs150909544		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	41	93	0	0.427083	0	T|1.000;C|0.000	0.000	weak	.	NCOR1	240	.	NM_001190440	exon19	c.A2272G	p.T758A	GAGAAGTAGCATT	.	PASS	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	37	12	114395651	114395651	+	Missense_Mutation	SNP	T	T	C	rs10850256	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	59	149	0	0.415493	0	T|0.808;C|0.192	0.192	strong	.	RBM19	117	.	NM_001146699	exon6	c.A776G	p.K259R	GCACCCTTGCTGT	.	PASS	Atlas-SNP
PHLDB2	90102	hgsc.bcm.edu	37	3	111688578	111688578	+	Silent	SNP	C	C	T	rs774854	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	35	69	0	0.411765	0	C|0.808;T|0.192	0.192	strong	.	PHLDB2	449	.	NM_001134439	exon16	c.C3357T	p.D1119D	GGAAGACTTTGAT	.	PASS	Atlas-SNP
CER1	9350	hgsc.bcm.edu	37	9	14722616	14722616	+	Missense_Mutation	SNP	G	G	A	rs10115703	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	35	60	0	0.522388	0	G|0.912;A|0.088	0.088	strong	CER1,NS,carcinoma,+2,1	CER1	41	1	NM_005454	exon1	c.C55T	p.R19W	GGTGCCGTGTGGT	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228467072	228467072	+	Silent	SNP	C	C	G	rs185248802	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	49	95	0	0.433628	0	C|0.989;G|0.011	0.011	strong	.	OBSCN	2142	.	NM_001271223	exon32	c.C8610G	p.T2870T	GCGGACCTGCTCC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9005674	9005674	+	Silent	SNP	G	G	A	rs4804091	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	198	190	1	1	0.00526316	G|0.754;A|0.246	0.246	strong	.	MUC16	4315	.	NM_024690	exon46	c.C39732T	p.D13244D	TTTGGGGTCAGGG	.	PASS	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	37	19	50100484	50100484	+	Silent	SNP	G	G	A	rs77535345	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	10	31	0	0.30303	0	G|0.963;A|0.037	0.037	strong	.	PRR12	157	.	NM_020719	exon4	c.G2892A	p.K964K	CGGCAAGGCCGGG	.	PASS	Atlas-SNP
NEK4	6787	hgsc.bcm.edu	37	3	52780205	52780205	+	Missense_Mutation	SNP	A	A	G	rs34986855	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	38	79	0	0.452381	0	A|0.975;G|0.025	0.025	strong	.	NEK4	51	.	NM_003157	exon10	c.T1699C	p.F567L	GCAAAAATCGAGG	.	PASS	Atlas-SNP
ZIM2	23619	hgsc.bcm.edu	37	19	57286688	57286688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	310	149	268	0	0.480645	0	.	.	none	ZIM2,NS,malignant_melanoma,+1,1	ZIM2	511	1	NM_015363	exon11	c.C952T	p.P318S	ACTGGGGACTCGT	.	PASS	Atlas-SNP
PACS2	23241	hgsc.bcm.edu	37	14	105858022	105858022	+	Missense_Mutation	SNP	C	C	T	rs147461490	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	35	51	0	0.660377	0	C|0.965;T|0.035	0.035	strong	PACS2,caecum,carcinoma,-1,4	PACS2	75	4	NM_001100913	exon22	c.C2174T	p.P725L	CCCCGCCGTCCGC	.	PASS	Atlas-SNP
GPR56	9289	hgsc.bcm.edu	37	16	57689385	57689385	+	Missense_Mutation	SNP	C	C	G	rs1801257	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	42	48	1	1	0.0208333	C|0.364;G|0.636;T|0.000	0.636	strong	GPR56,NS,carcinoma,0,1	GPR56	44	1	NM_001145773	exon6	c.C858G	p.S286R	CCGGAGCGGGGAG	.	scavenged	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	37	20	50408377	50408377	+	Silent	SNP	G	G	C	rs61737139	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	28	55	0	0.411765	0	G|0.974;C|0.026	0.026	strong	.	SALL4	168	.	NM_020436	exon2	c.C645G	p.L215L	CTGCTCGAGGACC	.	PASS	Atlas-SNP
C3orf22	152065	hgsc.bcm.edu	37	3	126268918	126268918	+	Silent	SNP	G	G	A	rs869463	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	59	121	0	0.508621	0	G|0.805;A|0.195	0.195	strong	.	C3orf22	17	.	NM_152533	exon4	c.C219T	p.L73L	AGCCCCGAGCCTA	.	PASS	Atlas-SNP
TTI1	9675	hgsc.bcm.edu	37	20	36641522	36641522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	5	122	0	0.0364963	0	.	.	none	TTI1,rectum,carcinoma,0,1	TTI1	104	1	NM_014657	exon3	c.G697A	p.V233I	AAGATACGACAAT	.	scavenged	Atlas-SNP
STON1	11037	hgsc.bcm.edu	37	2	48808152	48808152	+	Missense_Mutation	SNP	G	G	C	rs940389	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	64	159	0	0.474074	0	G|0.659;C|0.341	0.341	strong	.	STON1	100	.	NM_001198595	exon3	c.G380C	p.R127T	CTACCAGACCAAC	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7817852	7817852	+	Missense_Mutation	SNP	C	C	G	rs76615008	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	165	184	0	1	0	C|0.738;G|0.262	0.262	strong	.	OR5P2	68	.	NM_153444	exon1	c.G638C	p.C213S	ATGTAGCAGACGG	.	PASS	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	37	11	56467945	56467945	+	Missense_Mutation	SNP	G	G	T	rs36184181	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	38	168	0	0.206522	0	G|0.646;T|0.354	0.354	strong	.	.	.	.	NM_001013358	exon1	c.G82T	p.V28L	CTCTTCGTGGTGT	.	PASS	Atlas-SNP
TMEM37	140738	hgsc.bcm.edu	37	2	120194680	120194680	+	Silent	SNP	C	C	G	rs72833259	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	27	35	0	0.642857	0	C|0.983;G|0.017	0.017	strong	.	TMEM37	40	.	NM_183240	exon2	c.C237G	p.A79A	CCAGGCCCATGTG	.	PASS	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	37	1	98157291	98157291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	3	134	0	0.02	0	.	.	none	DPYD,NS,carcinoma,-1,1	DPYD	219	1	NM_000110	exon7	c.G744A	p.M248I	GTCCTTCATTAGC	.	scavenged	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61528271	61528271	+	Missense_Mutation	SNP	C	C	T	rs1883847	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	71	152	0	0.440994	0	C|0.752;T|0.248	0.248	strong	DIDO1,NS,carcinoma,0,1	DIDO1	321	1	NM_080797	exon7	c.G1666A	p.A556T	CCACCGCGGAGCC	.	PASS	Atlas-SNP
PTGR1	22949	hgsc.bcm.edu	37	9	114359624	114359624	+	Missense_Mutation	SNP	C	C	A	rs1053959	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	70	0	1	0	C|0.410;A|0.590	0.590	strong	.	PTGR1	23	.	NM_001146108	exon2	c.G79T	p.A27S	GCTCAGCTGTCTT	.	PASS	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	37	10	25888180	25888180	+	Missense_Mutation	SNP	A	A	G	rs10828833	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	27	58	0	0.6	0	A|0.388;G|0.612	0.612	strong	GPR158,right_upper_lobe,carcinoma,-2,1	GPR158	255	1	NM_020752	exon11	c.A3625G	p.I1209V	GAAGAGATCTGGG	.	PASS	Atlas-SNP
EML2	24139	hgsc.bcm.edu	37	19	46133256	46133256	+	Missense_Mutation	SNP	G	G	A	rs7252175	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	52	97	0	0.452174	0	G|0.857;A|0.143	0.143	strong	EML2,colon,carcinoma,+2,1	EML2	64	1	NM_001193268	exon10	c.C1162T	p.L388F	CCGAGAGCATGTG	.	PASS	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	37	10	70549579	70549579	+	Silent	SNP	G	G	A	rs11594683	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	95	182	0	0.463415	0	G|0.947;A|0.053	0.053	strong	.	CCAR1	118	.	NM_018237	exon24	c.G3300A	p.S1100S	GATTTCGGAAAAC	.	PASS	Atlas-SNP
TMEM120B	144404	hgsc.bcm.edu	37	12	122209423	122209423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	3	187	0	0.0133929	0	.	.	none	TMEM120B_ENST00000449592,NS,carcinoma,+1,2	TMEM120B	43	2	NM_001080825	exon8	c.G647A	p.R216H	AGTTTCGCAACCA	.	scavenged	Atlas-SNP
ZKSCAN2	342357	hgsc.bcm.edu	37	16	25255506	25255506	+	Silent	SNP	C	C	T	rs11642611	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	34	103	0	0.404762	0	C|0.698;T|0.302	0.302	strong	.	ZKSCAN2	90	.	NM_001012981	exon6	c.G1581A	p.K527K	TTTGCTCTTCCGA	.	PASS	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	37	9	96052295	96052295	+	Silent	SNP	C	C	G	rs4744216	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	32	55	0	0.571429	0	C|0.887;G|0.112	0.112	strong	.	WNK2	277	.	NM_006648	exon20	c.C4902G	p.A1634A	AGGGGCCGTGATG	.	PASS	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	37	22	26693026	26693026	+	Missense_Mutation	SNP	C	C	A	rs146559583	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	48	109	0	0.448598	0	C|1.000;A|0.000	0.000	strong	.	SEZ6L	174	.	NM_001184777	exon4	c.C1142A	p.T381N	TTGGGACCTTCCA	.	PASS	Atlas-SNP
CSE1L	1434	hgsc.bcm.edu	37	20	47685320	47685320	+	Silent	SNP	G	G	C	rs2227946	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	136	223	0	0.505576	0	G|0.784;C|0.216	0.216	strong	.	CSE1L	83	.	NM_001256135	exon7	c.G636C	p.L212L	TTCCCTGATCCTG	.	PASS	Atlas-SNP
SIAE	54414	hgsc.bcm.edu	37	11	124506967	124506967	+	Silent	SNP	C	C	T	rs7941327	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	84	171	0	0.474576	0	C|0.852;T|0.148	0.148	strong	.	SIAE	37	.	NM_170601	exon10	c.G1452A	p.T484T	AGGCCACGTGGTC	.	PASS	Atlas-SNP
GPR39	2863	hgsc.bcm.edu	37	2	133174999	133174999	+	Silent	SNP	A	A	G	rs2241763	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	73	192	0	0.412429	0	A|0.608;G|0.392	0.392	strong	.	GPR39	60	.	NM_001508	exon1	c.A384G	p.T128T	GCTGACACTCAGC	.	PASS	Atlas-SNP
FMR1NB	158521	hgsc.bcm.edu	37	X	147088249	147088249	+	Missense_Mutation	SNP	C	C	T	rs764631	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	47	38	0	0.959184	0	C|0.582;0|0.015	.	strong	.	FMR1NB	51	.	NM_152578	exon3	c.C425T	p.A142V	AGGTGGCAAAGCC	.	PASS	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	37	14	101349764	101349764	+	Silent	SNP	C	C	T	rs34163305	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	106	98	0	1	0	C|0.883;T|0.117	0.117	strong	.	RTL1	120	.	NM_001134888	exon1	c.G1362A	p.P454P	TGGGTACGGCTTC	.	PASS	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	37	7	34125420	34125420	+	Silent	SNP	G	G	T	rs77064045	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	92	189	0	0.476684	0	G|0.769;T|0.231	0.231	strong	BMPER,left_upper_lobe,carcinoma,+2,1	BMPER	131	1	NM_133468	exon14	c.G1461T	p.P487P	TGCGCCGCATCTC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1101649	1101649	+	Silent	SNP	T	T	C	rs7480563	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	71	0	1	0	T|0.346;C|0.654	0.654	strong	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2	614	1	NM_002457	exon43	c.T7650C	p.P2550P	CTGTCCTTTCTAC	.	PASS	Atlas-SNP
LRRC19	64922	hgsc.bcm.edu	37	9	26995787	26995787	+	Missense_Mutation	SNP	G	G	A	rs41272237	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	30	69	0	0.483871	0	G|0.949;A|0.051	0.051	strong	.	LRRC19	24	.	NM_022901	exon5	c.C845T	p.T282M	GAAGTCGTCAGTA	.	PASS	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	37	19	53117017	53117017	+	Silent	SNP	T	T	G	rs7248435	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	11	58	0	0.25	0	T|0.881;G|0.119	0.119	strong	.	ZNF83	73	.	NM_018300	exon3	c.A801C	p.G267G	GACCTTTCCACAT	.	PASS	Atlas-SNP
TCEB3	6924	hgsc.bcm.edu	37	1	24077451	24077451	+	Missense_Mutation	SNP	C	C	T	rs2235541	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	34	67	1	0.425	0.0149254	C|0.932;T|0.068	0.068	strong	TCEB3,NS,carcinoma,-1,1	TCEB3	61	1	NM_003198	exon4	c.C434T	p.T145M	AAGCCACGGGGAG	.	scavenged	Atlas-SNP
ATP1A1	476	hgsc.bcm.edu	37	1	116937809	116937809	+	Missense_Mutation	SNP	A	A	G	rs77217304	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	84	185	0	0.444444	0	A|0.977;G|0.023	0.023	strong	.	ATP1A1	87	.	NM_001160233	exon13	c.A1738G	p.I580V	TTCCCTATCGATA	.	PASS	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178540975	178540975	+	Missense_Mutation	SNP	G	G	A	rs1054480	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	380	184	355	0	0.484211	0	G|0.764;N|0.000	.	strong	.	ADAMTS2	190	.	NM_014244	exon22	c.C3529T	p.P1177S	GGTTGGGTGGCTG	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	34137200	34137200	+	Silent	SNP	T	T	G	rs41279228	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	85	143	0	0.555556	0	T|0.854;G|0.146	0.146	strong	RYR3,brain,glioma,0,1	RYR3	760	1	NM_001036	exon93	c.T13434G	p.R4478R	CCTGCGTGCCCTG	.	PASS	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	37	9	139371786	139371786	+	Silent	SNP	A	A	C	rs6560632	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	61	143	0	0.432624	0	A|0.601;C|0.399	0.399	strong	.	SEC16A	249	.	NM_014866	exon3	c.T282G	p.V94V	GTGAGGAACAAGC	.	PASS	Atlas-SNP
MYCT1	80177	hgsc.bcm.edu	37	6	153043035	153043035	+	Missense_Mutation	SNP	G	G	A	rs17710008	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	105	235	0	0.546875	0	G|0.882;A|0.118	0.118	strong	.	MYCT1	48	.	NM_025107	exon2	c.G355A	p.G119S	ACCCACGGCCTCA	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133541107	133541107	+	Missense_Mutation	SNP	T	T	A	rs16841277	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	139	291	0	0.528517	0	T|0.780;A|0.220	0.220	strong	.	NCKAP5	322	.	NM_207363	exon14	c.A3277T	p.N1093Y	TATCATTCAATTG	.	PASS	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	37	14	21109385	21109385	+	Missense_Mutation	SNP	C	C	T	rs11622969	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	100	99	0	0.990099	0	C|0.498;T|0.502	0.502	strong	.	OR6S1	49	.	NM_001001968	exon1	c.G466A	p.V156I	CAGGGACGAGTCC	.	PASS	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	37	1	173839907	173839907	+	Silent	SNP	C	C	T	rs36119794	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	50	79	0	0.60241	0	C|0.948;T|0.052	0.052	strong	.	ZBTB37	38	.	NM_032522	exon3	c.C544T	p.L182L	GCTGTGCTGGATA	.	PASS	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	37	2	71650236	71650236	+	Missense_Mutation	SNP	T	T	C	rs79157966	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	59	99	0	0.584158	0	T|0.994;C|0.006	0.006	strong	.	ZNF638	179	.	NM_014497	exon22	c.T3592C	p.C1198R	GAGGAGTGTGCTT	.	PASS	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39595484	39595484	+	Nonsense_Mutation	SNP	G	G	A	rs148768443	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	21	92	0	0.190909	0	G|0.975;A|0.025	0.025	strong	KRT38,NS,carcinoma,0,7	KRT38	63	7	NM_006771	exon3	c.C703T	p.Q235X	AGAGCTGCTCCTC	.	PASS	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	37	12	52681080	52681080	+	Silent	SNP	G	G	A	rs4761784	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	113	145	0	0.991228	0	G|0.744;A|0.256	0.256	strong	.	KRT81	46	.	NM_002281	exon7	c.C1053T	p.A351A	AGACTGGGCCACC	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	37	19	10079093	10079093	+	Missense_Mutation	SNP	C	C	T	rs3815746	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	46	119	0	0.511111	0	C|0.783;T|0.216	0.216	strong	.	COL5A3	243	.	NM_015719	exon59	c.G4282A	p.V1428M	CCTGCACGCCTGG	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100679366	100679366	+	Missense_Mutation	SNP	A	A	G	rs74209688	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	116	117	1	0.991453	0.00854701	A|0.784;G|0.216	0.216	strong	MUC17,NS,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.A4669G	p.T1557A	CCTACAACTGCTG	.	PASS	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	37	15	86284342	86284342	+	Silent	SNP	C	C	T	rs16943792	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	97	213	0	0.459716	0	C|0.809;T|0.191	0.191	strong	AKAP13_ENST00000394518,NS,carcinoma,0,2	AKAP13	394	2	NM_006738	exon35	c.C7686T	p.L2562L	GGCGCTCACTCGC	.	PASS	Atlas-SNP
CERS3	204219	hgsc.bcm.edu	37	15	101042043	101042043	+	Silent	SNP	C	C	T	rs77089459	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	39	97	0	0.443182	0	C|0.959;T|0.041	0.041	strong	.	.	.	.	NM_178842	exon4	c.G12A	p.T4T	TTTAAACGTCCAA	.	PASS	Atlas-SNP
APOBEC3H	164668	hgsc.bcm.edu	37	22	39497404	39497404	+	Missense_Mutation	SNP	G	G	C	rs139297	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	41	96	0	0.460674	0	G|0.456;C|0.544	0.544	strong	.	APOBEC3H	28	.	NM_001166003	exon3	c.G313C	p.G105R	AACCTGGGCATCT	.	PASS	Atlas-SNP
ERN1	2081	hgsc.bcm.edu	37	17	62132160	62132160	+	Silent	SNP	C	C	T	rs55653398	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	21	57	0	0.512195	0	C|0.988;T|0.012	0.012	strong	.	ERN1	102	.	NM_001433	exon14	c.G1701A	p.G567G	AATTTTCCCAACT	.	PASS	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	37	3	127703085	127703085	+	Silent	SNP	G	G	A	rs13100951	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	54	171	0	0.412214	0	G|0.771;A|0.229	0.229	strong	.	KBTBD12	41	.	NM_207335	exon5	c.G1836A	p.P612P	CCCCCCGCCTTCA	.	PASS	Atlas-SNP
MTMR6	9107	hgsc.bcm.edu	37	13	25831928	25831928	+	Silent	SNP	C	C	T	rs186466011	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	23	56	0	0.547619	0	C|1.000;T|0.000	0.000	strong	.	MTMR6	75	.	NM_004685	exon8	c.G915A	p.S305S	CCATCCCGAGCTC	.	PASS	Atlas-SNP
EFHB	151651	hgsc.bcm.edu	37	3	19962044	19962044	+	Missense_Mutation	SNP	G	G	A	rs13078867	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	16	53	0	0.313726	0	G|0.804;A|0.196	0.196	strong	.	EFHB	186	.	NM_144715	exon2	c.C805T	p.P269S	CAACTGGAATAAC	.	PASS	Atlas-SNP
RALGAPA2	57186	hgsc.bcm.edu	37	20	20493222	20493222	+	Silent	SNP	G	G	A	rs35039408	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	51	121	0	0.463636	0	G|0.683;A|0.317	0.317	strong	RALGAPA2_ENST00000202677,NS,carcinoma,0,3	RALGAPA2	274	3	NM_020343	exon32	c.C4791T	p.P1597P	TCCTCGGGGCTCC	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	37	5	14498727	14498727	+	Silent	SNP	G	G	A	rs26107	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	67	127	0	0.51938	0	G|0.894;N|0.000	.	strong	.	TRIO	305	.	NM_007118	exon53	c.G8310A	p.S2770S	CTCATCGTCGGCC	.	PASS	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	37	1	248512749	248512749	+	Missense_Mutation	SNP	G	G	A	rs28377739	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	386	178	355	0	0.46114	0	G|0.502;A|0.498	0.498	strong	OR14C36,NS,adenoma,0,1	OR14C36	113	1	NM_001001918	exon1	c.G673A	p.G225R	GTGCTCGGGTTTC	.	PASS	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	37	12	48398080	48398080	+	Missense_Mutation	SNP	T	T	A	rs3803183	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	52	113	0	0.541667	0	T|0.277;A|0.723	0.723	strong	.	COL2A1	368	.	NM_033150	exon1	c.A25T	p.T9S	CCAGCGTCTGGGG	.	PASS	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	37	17	39041052	39041052	+	Missense_Mutation	SNP	C	C	T	rs7212483	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	58	131	0	0.42963	0	C|0.874;T|0.126	0.126	strong	.	KRT20	38	.	NM_019010	exon1	c.G386A	p.S129N	ACCTGACTTCGCA	.	PASS	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	37	14	45665434	45665434	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	74	131	0	0.528571	0	.	.	none	.	FANCM	225	.	NM_020937	exon21	c.A5400G	p.P1800P	AAGACCACATTTA	.	PASS	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65427124	65427124	+	Silent	SNP	A	A	G	rs809363	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	71	65	0	1	0	A|0.687;0|0.002	.	strong	.	HEPH	224	.	NM_138737	exon14	c.A2541G	p.T847T	TGGTACATTCAGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152284549	152284549	+	Missense_Mutation	SNP	G	G	C	rs141646551	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	427	28	355	1	0.0655738	0.0028169	G|0.989;C|0.011	0.011	strong	FLG,rectum,NS,0,1	FLG	900	1	NM_002016	exon3	c.C2813G	p.T938R	CTGCTTGTCCTGG	.	scavenged	Atlas-SNP
KLHL26	55295	hgsc.bcm.edu	37	19	18779113	18779113	+	Silent	SNP	C	C	T	rs17852385	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	25	30	0	0.675676	0	C|0.969;T|0.031	0.031	strong	.	KLHL26	43	.	NM_018316	exon3	c.C906T	p.T302T	GCGCACCGCCGTG	.	PASS	Atlas-SNP
SMCO2	0	hgsc.bcm.edu	37	12	27648710	27648710	+	Missense_Mutation	SNP	C	C	T	rs3751223	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	59	102	0	0.437037	0	C|0.859;T|0.141	0.141	strong	.	.	.	.	NM_001145010	exon8	c.C755T	p.T252M	TAGATACGGAAGA	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76472768	76472768	+	Silent	SNP	G	G	A	rs7405830	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	113	195	0	0.472803	0	G|0.641;A|0.359	0.359	strong	.	DNAH17	347	.	NM_173628	exon52	c.C8040T	p.L2680L	GCGGACGAGGTCC	.	PASS	Atlas-SNP
TRIM77	390231	hgsc.bcm.edu	37	11	89447375	89447375	+	Missense_Mutation	SNP	C	C	T	rs17221124	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	55	86	0	0.478261	0	C|0.957;T|0.043	0.043	strong	.	.	.	.	NM_001146162	exon3	c.C523T	p.R175W	AATTTGCGGAGCA	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23909162	23909162	+	Silent	SNP	A	A	G	rs9552929	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	85	0	0.526316	0	A|0.767;G|0.233	0.233	strong	.	SACS	871	.	NM_014363	exon10	c.T8853C	p.V2951V	CTTTACAACATGA	.	PASS	Atlas-SNP
PRSS33	260429	hgsc.bcm.edu	37	16	2834711	2834711	+	Silent	SNP	G	G	A	rs45570838	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	59	122	1	0.5	0.00819672	G|0.934;A|0.066	0.066	strong	PRSS33,NS,carcinoma,0,1	PRSS33	7	1	NM_152891	exon6	c.C777T	p.N259N	TGGACGGTTGGGC	.	scavenged	Atlas-SNP
HIST1H2BA	255626	hgsc.bcm.edu	37	6	25727334	25727334	+	Silent	SNP	C	C	T	rs4712961	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	47	114	0	0.38843	0	C|0.679;T|0.321	0.321	strong	.	HIST1H2BA	25	.	NM_170610	exon1	c.C198T	p.S66S	GAATTCCTTCGTC	.	PASS	Atlas-SNP
PCSK9	255738	hgsc.bcm.edu	37	1	55505564	55505564	+	Silent	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	57	59	0	0.678571	0	.	.	none	.	PCSK9	76	.	NM_174936	exon1	c.G54T	p.L18L	GCTGCTGCTGCTG	.	PASS	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145113241	145113241	+	Missense_Mutation	SNP	T	T	G	rs3935209	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	15	42	0	0.384615	0	T|0.812;G|0.188	0.188	strong	OPLAH,NS,carcinoma,0,1	OPLAH	78	1	NM_017570	exon7	c.A850C	p.S284R	CAGCACTGGAGCC	.	PASS	Atlas-SNP
LGMN	5641	hgsc.bcm.edu	37	14	93172903	93172903	+	Silent	SNP	C	C	T	rs143184687	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	74	85	0	0.573643	0	C|0.984;T|0.016	0.016	strong	.	LGMN	28	.	NM_005606	exon12	c.G1116A	p.P372P	CGTGAGCGGGGCT	.	PASS	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56088825	56088825	+	Missense_Mutation	SNP	T	T	A	rs74445297	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	30	209	0	0.140187	0	T|0.752;A|0.248	0.248	strong	.	PSPH	23	.	NM_004577	exon4	c.A81T	p.R27S	TTCTTCTCTGATG	.	PASS	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	37	15	94841691	94841691	+	Missense_Mutation	SNP	G	G	A	rs61737195	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	26	45	0	0.619048	0	G|0.880;A|0.120	0.120	strong	MCTP2,colon,carcinoma,+1,1	MCTP2	122	1	NM_001159643	exon1	c.G197A	p.R66Q	AGGGCCGGCCTTA	.	PASS	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	37	11	68851466	68851466	+	Silent	SNP	G	G	T	rs896973	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	302	301	326	1	0.996689	0.00306748	G|0.583;T|0.417	0.417	strong	.	TPCN2	63	.	NM_139075	exon19	c.G1743T	p.A581A	GCGTGCGTTTGGC	.	PASS	Atlas-SNP
C19orf57	79173	hgsc.bcm.edu	37	19	14000196	14000196	+	Missense_Mutation	SNP	G	G	T	rs61732721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	39	88	0	0.453488	0	G|0.996;T|0.004	0.004	strong	.	C19orf57	34	.	NM_024323	exon6	c.C1473A	p.D491E	GAGAGGGTCGTCT	.	PASS	Atlas-SNP
TNN	63923	hgsc.bcm.edu	37	1	175092674	175092674	+	Missense_Mutation	SNP	C	C	T	rs2285215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	213	175	0	1	0	C|0.379;T|0.621	0.621	strong	TNN,colon,carcinoma,0,3	TNN	297	3	NM_022093	exon12	c.C2789T	p.P930L	AGGTTCCGGTGGG	.	PASS	Atlas-SNP
LMAN1L	79748	hgsc.bcm.edu	37	15	75117912	75117912	+	Missense_Mutation	SNP	G	G	T	rs79217743	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	21	40	0	0.512195	0	G|0.903;T|0.097	0.097	strong	.	LMAN1L	43	.	NM_021819	exon14	c.G1547T	p.R516M	TTCTGAGGAGGCA	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3731985	3731985	+	Silent	SNP	G	G	A	rs1879040	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	18	35	0	0.339623	0	G|0.686;A|0.314	0.314	strong	TJP3,colon,carcinoma,0,2	TJP3	79	2	NM_001267561	exon6	c.G693A	p.S231S	AGATTCGGGCCTG	.	PASS	Atlas-SNP
ITLN2	142683	hgsc.bcm.edu	37	1	160922421	160922421	+	Missense_Mutation	SNP	T	T	G	rs145457015	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	30	67	0	0.447761	0	T|0.999;G|0.001	0.001	strong	.	ITLN2	35	.	NM_080878	exon3	c.A182C	p.H61P	GCACTATGGCAGC	.	PASS	Atlas-SNP
CLNK	116449	hgsc.bcm.edu	37	4	10586571	10586571	+	Missense_Mutation	SNP	G	G	A	rs61759824	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	20	50	0	0.444444	0	G|0.967;A|0.033	0.033	strong	.	CLNK	85	.	NM_052964	exon4	c.C92T	p.P31L	ATGCGAGGCCATG	.	PASS	Atlas-SNP
GLIPR1	11010	hgsc.bcm.edu	37	12	75884254	75884254	+	Silent	SNP	C	C	T	rs28932170	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	35	57	0	0.614035	0	T|0.059;C|0.941	0.059	strong	.	GLIPR1	33	.	NM_006851	exon3	c.C489T	p.D163D	CTTTGACGCTCTT	.	PASS	Atlas-SNP
PUS7	54517	hgsc.bcm.edu	37	7	105148683	105148683	+	Missense_Mutation	SNP	A	A	G	rs139058270	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	244	112	246	0	0.459016	0	A|0.995;G|0.005	0.005	strong	.	PUS7	59	.	NM_019042	exon2	c.T277C	p.C93R	CCTCGCACTCCTC	.	PASS	Atlas-SNP
TNC	3371	hgsc.bcm.edu	37	9	117846580	117846580	+	Missense_Mutation	SNP	T	T	C	rs1061494	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	41	84	0	0.585714	0	T|0.531;C|0.469	0.469	strong	TNC,NS,carcinoma,0,1	TNC	282	1	NM_002160	exon4	c.A2039G	p.Q680R	AGCTCCTGGATGA	.	PASS	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	37	9	712599	712599	+	Silent	SNP	C	C	T	rs11789987	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	107	80	1	1	0.0125	C|0.719;T|0.281	0.281	strong	KANK1_ENST00000382303,colon,carcinoma,0,2	KANK1	231	2	NM_001256876	exon7	c.C1833T	p.N611N	TGTGAACGACCTC	.	scavenged	Atlas-SNP
BOK	666	hgsc.bcm.edu	37	2	242501828	242501828	+	Silent	SNP	C	C	T	rs145137590	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	48	88	0	0.545455	0	C|0.995;T|0.005	0.005	strong	BOK,NS,carcinoma,0,1	BOK	16	1	NM_032515	exon3	c.C286T	p.L96L	ATCTCCCTGCAGT	.	PASS	Atlas-SNP
TDRD10	126668	hgsc.bcm.edu	37	1	154516477	154516477	+	Missense_Mutation	SNP	G	G	A	rs12750774	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	75	135	0	0.555556	0	G|0.809;A|0.191	0.191	strong	TDRD10,NS,carcinoma,+1,3	TDRD10	48	3	NM_182499	exon9	c.G542A	p.R181Q	GCTTCCGAGACCT	.	PASS	Atlas-SNP
POM121	9883	hgsc.bcm.edu	37	7	72409197	72409197	+	Silent	SNP	G	G	A	rs112174498	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	462	239	445	1	0.517316	0.00224719	G|0.977;A|0.023	0.023	strong	.	POM121	131	.	NM_172020	exon6	c.G549A	p.P183P	GACACCGGAGAGG	.	PASS	Atlas-SNP
CLGN	1047	hgsc.bcm.edu	37	4	141320081	141320081	+	Missense_Mutation	SNP	G	G	A	rs114046582	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	101	220	0	0.452915	0	G|0.981;A|0.019	0.019	strong	.	CLGN	76	.	NM_001130675	exon9	c.C808T	p.P270S	CATTGGGATCTTC	.	PASS	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	37	7	36459076	36459076	+	Silent	SNP	G	G	A	rs17213431	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	40	66	0	0.571429	0	G|0.916;A|0.084	0.084	strong	.	ANLN	101	.	NM_018685	exon10	c.G1857A	p.V619V	TGGTGTGGTAAGT	.	PASS	Atlas-SNP
COG3	83548	hgsc.bcm.edu	37	13	46099171	46099171	+	Missense_Mutation	SNP	C	C	T	rs144497765	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	66	114	0	0.515625	0	C|0.999;T|0.001	0.001	strong	.	COG3	52	.	NM_031431	exon20	c.C2215T	p.P739S	CAGCAGCCTTGGG	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	37	2	228131169	228131169	+	Missense_Mutation	SNP	A	A	G	rs11677877	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	126	230	1	0.545455	0.00434783	A|0.908;G|0.092	0.092	strong	COL4A3_ENST00000328380,caecum,carcinoma,-1,2	COL4A3	293	2	NM_000091	exon22	c.A1352G	p.H451R	GAGATCACGGACT	.	PASS	Atlas-SNP
CFHR3	10878	hgsc.bcm.edu	37	1	196757392	196757392	+	Silent	SNP	C	C	T	rs61735322	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	86	80	0	1	0	C|0.379;T|0.621	0.621	strong	CFHR3,NS,carcinoma,0,1	CFHR3	52	1	NM_021023	exon4	c.C477T	p.S159S	CATTTCCGAATCT	.	PASS	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	37	18	28934681	28934681	+	Missense_Mutation	SNP	A	A	T	rs3752095	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	102	180	0	0.474419	0	A|0.864;T|0.136	0.136	strong	.	DSG1	176	.	NM_001942	exon15	c.A2522T	p.Y841F	AGTCTTACACCAC	.	PASS	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	37	13	110827574	110827574	+	Silent	SNP	T	T	A	rs874203	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	53	142	0	0.424	0	T|0.665;A|0.335	0.335	strong	COL4A1_ENST00000375815,NS,carcinoma,-1,2	COL4A1	372	2	NM_001845	exon37	c.A3189T	p.R1063R	TTCACCTCGCAGC	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2807783	2807783	+	Silent	SNP	G	G	A	rs35043129	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	76	144	0	0.466258	0	G|0.836;A|0.164	0.164	strong	.	CSMD1	1469	.	NM_033225	exon67	c.C10284T	p.F3428F	ATTTTCGAACTTG	.	PASS	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	37	22	51153371	51153371	+	Missense_Mutation	SNP	G	G	A	rs61729471	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	33	71	0	0.485294	0	G|0.988;A|0.012	0.012	strong	.	SHANK3	96	.	NM_033517	exon19	c.G2119A	p.A707T	GCAGCCGCCGCAG	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43923934	43923934	+	Silent	SNP	T	T	C	rs11079725	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	48	54	0	1	0	T|0.854;C|0.146	0.146	strong	.	.	.	.	NM_175882	exon1	c.T1662C	p.D554D	AGCAGATGCCCAC	.	PASS	Atlas-SNP
GALNT2	2590	hgsc.bcm.edu	37	1	230415148	230415148	+	Missense_Mutation	SNP	G	G	A	rs2273970	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	67	134	0	0.51938	0	G|0.925;A|0.075	0.075	strong	.	GALNT2	83	.	NM_004481	exon16	c.G1660A	p.V554M	GTGGAGGTGTGTG	.	PASS	Atlas-SNP
KRT33A	3883	hgsc.bcm.edu	37	17	39503163	39503163	+	Missense_Mutation	SNP	G	G	A	rs57740817	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	101	179	1	0.935185	0.00558659	G|0.333;A|0.667	0.667	weak	KRT33A,colon,carcinoma,0,1	KRT33A	53	1	NM_004138	exon5	c.C809T	p.A270V	ATCTCCGCCTGGT	.	PASS	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	37	3	127413881	127413881	+	Silent	SNP	T	T	C	rs4881	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	251	111	261	0	0.442231	0	T|0.903;C|0.097	0.097	strong	.	MGLL	19	.	NM_007283	exon7	c.A753G	p.L251L	GTCACATAGGCGA	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152189038	152189038	+	Silent	SNP	A	A	G	rs145118416	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	268	30	289	1	0.11194	0.00346021	A|0.968;G|0.032	0.032	strong	HRNR,NS,carcinoma,0,1	HRNR	403	1	NM_001009931	exon3	c.T5067C	p.Y1689Y	CTGACCATAGCGG	.	scavenged	Atlas-SNP
CPVL	54504	hgsc.bcm.edu	37	7	29111950	29111950	+	Silent	SNP	A	A	G	rs62442642	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	59	124	0	0.491667	0	A|0.995;G|0.005	0.005	strong	.	CPVL	60	.	NM_019029	exon8	c.T699C	p.I233I	AATAGCAATTCCG	.	PASS	Atlas-SNP
TEKT4	150483	hgsc.bcm.edu	37	2	95537330	95537330	+	Silent	SNP	G	G	A	rs140196891	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	28	47	0	0.509091	0	G|0.995;A|0.005	0.005	strong	.	TEKT4	72	.	NM_144705	exon1	c.G6A	p.A2A	CATGGCGCAGACA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105406372	105406372	+	Missense_Mutation	SNP	C	C	T	rs61421370	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	60	55	0	0.967742	0	C|0.639;T|0.361	0.361	strong	AHNAK2_ENST00000333244,NS,carcinoma,-1,2	AHNAK2	719	2	NM_138420	exon7	c.G15416A	p.G5139E	ACATCCCCGAGCC	.	PASS	Atlas-SNP
DUSP19	142679	hgsc.bcm.edu	37	2	183951888	183951888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	34	70	0	0.539683	0	.	.	none	.	DUSP19	41	.	NM_080876	exon3	c.T394C	p.C132R	CCAGAATGTTTTG	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99116903	99116903	+	Missense_Mutation	SNP	C	C	T	rs1048445	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	49	88	0	0.457944	0	C|0.753;T|0.247	0.247	strong	.	RRP12	97	.	NM_015179	exon34	c.G3842A	p.R1281Q	CCTCGCCGGGCAG	.	PASS	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	37	1	182443014	182443014	+	Missense_Mutation	SNP	G	G	C	rs647224	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	70	144	0	0.479452	0	G|0.871;C|0.129	0.129	strong	RGSL2,NS,carcinoma,0,1	RGSL1	111	1	NM_001137669	exon6	c.G768C	p.W256C	GATGTGGCAATTG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9049396	9049396	+	Silent	SNP	C	C	G	rs10425044	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	83	181	0	0.466292	0	C|0.781;G|0.219	0.219	strong	.	MUC16	4315	.	NM_024690	exon5	c.G32235C	p.G10745G	GTCTGTCCCAGAA	.	PASS	Atlas-SNP
CACHD1	57685	hgsc.bcm.edu	37	1	65147002	65147002	+	Silent	SNP	C	C	T	rs3828064	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	87	211	0	0.483333	0	C|0.900;T|0.100	0.100	strong	.	CACHD1	125	.	NM_020925	exon25	c.C3315T	p.H1105H	CAGCCACGAAGAC	.	PASS	Atlas-SNP
CYP2D6	1565	hgsc.bcm.edu	37	22	42523636	42523636	+	Missense_Mutation	SNP	C	C	A	rs3915951	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	17	134	1	0.11039	0.00746269	C|0.500;A|0.500	0.500	weak	CYP2D6_ENST00000360608,NS,carcinoma,0,11	CYP2D6	104	11	NM_000106	exon7	c.G986T	p.R329L	ACACGGCCTGGAC	.	scavenged	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	37	11	5068431	5068431	+	Missense_Mutation	SNP	G	G	A	rs17350764	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	394	200	366	1	0.507614	0.00273224	G|0.792;A|0.208	0.208	strong	OR52J3,right_upper_lobe,carcinoma,-2,1	OR52J3	77	1	NM_001001916	exon1	c.G676A	p.V226I	CGTGCTGTCTTCC	.	PASS	Atlas-SNP
LSAMP	4045	hgsc.bcm.edu	37	3	115571364	115571364	+	Silent	SNP	C	C	T	rs3821560	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	76	158	1	0.477987	0.00632911	C|0.912;T|0.088	0.088	strong	LSAMP,NS,carcinoma,0,1	LSAMP	62	1	NM_002338	exon4	c.G615A	p.S205S	ATCCGCCGAGGAG	.	scavenged	Atlas-SNP
OR52M1	119772	hgsc.bcm.edu	37	11	4567185	4567185	+	Silent	SNP	T	T	C	rs12295898	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	107	209	0	0.45339	0	T|0.933;C|0.067	0.067	strong	.	OR52M1	53	.	NM_001004137	exon1	c.T765C	p.Y255Y	CTTTTATGTTCCC	.	PASS	Atlas-SNP
DOK6	220164	hgsc.bcm.edu	37	18	67266681	67266681	+	Missense_Mutation	SNP	C	C	T	rs140434706	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	38	58	0	0.535211	0	C|0.998;T|0.002	0.002	strong	.	DOK6	56	.	NM_152721	exon3	c.C236T	p.A79V	AGCATGCGGTGGC	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	37	10	29770551	29770551	+	Missense_Mutation	SNP	A	A	G	rs11007612	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	92	196	0	0.489362	0	A|0.915;G|0.085	0.085	strong	SVIL,NS,carcinoma,+1,1	SVIL	226	1	NM_021738	exon28	c.T5062C	p.S1688P	CATTCGATCTCTT	.	PASS	Atlas-SNP
IFT74	80173	hgsc.bcm.edu	37	9	27009100	27009100	+	Missense_Mutation	SNP	T	T	C	rs17694549	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	117	226	1	0.493671	0.00442478	T|0.943;C|0.057	0.057	strong	.	IFT74	46	.	NM_001099222	exon9	c.T670C	p.F224L	ATGTCTTTTGAAA	.	PASS	Atlas-SNP
RNF133	168433	hgsc.bcm.edu	37	7	122338664	122338664	+	Silent	SNP	T	T	C	rs373664210		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	69	167	0	0.45098	0	.	.	weak	.	RNF133	41	.	NM_139175	exon1	c.A309G	p.A103A	AATAAGTGCAAGC	.	PASS	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	37	2	130897218	130897218	+	Silent	SNP	T	T	C	rs13006246	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	279	133	267	1	0.476703	0.00374532	T|0.826;C|0.174	0.174	strong	.	CCDC74B	27	.	NM_207310	exon8	c.A1053G	p.A351A	CTTCAGTGCGGGC	.	PASS	Atlas-SNP
TJP2	9414	hgsc.bcm.edu	37	9	71864319	71864319	+	Missense_Mutation	SNP	G	G	A	rs150494393		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	70	78	0	0.679612	0	G|1.000;A|0.000	0.000	weak	TJP2,caecum,carcinoma,0,1	TJP2	120	1	NM_001170416	exon20	c.G3002A	p.R1001Q	AGCCACGAGCTCA	.	PASS	Atlas-SNP
CABP5	56344	hgsc.bcm.edu	37	19	48543923	48543923	+	Silent	SNP	C	C	A	rs12982629	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	72	119	0	0.458599	0	C|0.798;A|0.202	0.202	strong	.	CABP5	28	.	NM_019855	exon3	c.G177T	p.T59T	ACCCATCGTCCTC	.	PASS	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	37	15	79750256	79750256	+	Silent	SNP	A	A	G	rs3750002	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	35	95	0	0.402299	0	A|0.931;G|0.069	0.069	strong	.	KIAA1024	146	.	NM_015206	exon2	c.A1767G	p.E589E	CTCGGAAGAAGAG	.	PASS	Atlas-SNP
KANK3	256949	hgsc.bcm.edu	37	19	8399272	8399272	+	Silent	SNP	G	G	A	rs8106699	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	54	103	0	0.457627	0	G|0.859;A|0.141	0.141	strong	.	KANK3	35	.	NM_198471	exon4	c.C1359T	p.D453D	TGTGCCGTCTCTC	.	PASS	Atlas-SNP
ZBTB32	27033	hgsc.bcm.edu	37	19	36206050	36206050	+	Missense_Mutation	SNP	A	A	C	rs2227278	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	22	31	0	0.564103	0	A|0.905;C|0.095	0.095	strong	.	ZBTB32	33	.	NM_014383	exon2	c.A522C	p.R174S	AGGCAGACCCGAG	.	PASS	Atlas-SNP
BTC	685	hgsc.bcm.edu	37	4	75675841	75675841	+	Missense_Mutation	SNP	A	A	T	rs11938093	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	256	110	258	0	0.429688	0	A|0.755;T|0.245	0.245	strong	.	BTC	23	.	NM_001729	exon4	c.T370A	p.L124M	CTATCAAACAAAT	.	PASS	Atlas-SNP
ARSF	416	hgsc.bcm.edu	37	X	3030403	3030403	+	Missense_Mutation	SNP	C	C	T	rs1052638	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	63	58	0	0.969231	0	C|0.930;T|0.070	0.070	strong	.	ARSF	97	.	NM_004042	exon11	c.C1579T	p.H527Y	CCCCTCCATGATT	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187549428	187549428	+	Missense_Mutation	SNP	C	C	T	rs2304867	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	63	126	1	0.516393	0.00793651	C|0.922;T|0.078	0.078	strong	FAT1,colon,carcinoma,0,2	FAT1	500	2	NM_005245	exon9	c.G4690A	p.A1564T	AGGAAGCGGTGAA	.	scavenged	Atlas-SNP
ELMOD3	84173	hgsc.bcm.edu	37	2	85595818	85595818	+	Missense_Mutation	SNP	C	C	T	rs955592	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	34	84	0	0.447368	0	C|0.951;T|0.049	0.049	strong	.	ELMOD3	53	.	NM_001135022	exon7	c.C209T	p.T70I	TGAGTACAGAGGT	.	PASS	Atlas-SNP
MAMDC4	158056	hgsc.bcm.edu	37	9	139748690	139748690	+	Missense_Mutation	SNP	A	A	G	rs151266186	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	34	109	0	0.357895	0	A|0.999;G|0.001	0.001	strong	.	MAMDC4	117	.	NM_206920	exon7	c.A698G	p.H233R	CGGGACACCACCA	.	PASS	Atlas-SNP
CER1	9350	hgsc.bcm.edu	37	9	14720357	14720357	+	Missense_Mutation	SNP	C	C	T	rs7036635	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	48	94	0	0.403361	0	A|0.005;C|0.899;T|0.096	0.096	strong	.	CER1	41	.	NM_005454	exon2	c.G535A	p.V179I	CAACTACTTTTTC	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	39008003	39008003	+	Silent	SNP	G	G	A	rs2304151	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	31	50	0	0.525424	0	G|0.938;A|0.062	0.062	strong	.	RYR1	708	.	NM_001042723	exon66	c.G9690A	p.L3230L	AGTCCTGGGGCTC	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	37	5	175998246	175998246	+	Silent	SNP	T	T	C	rs17078320	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	32	98	0	0.395062	0	T|0.732;C|0.268	0.268	strong	.	CDHR2	152	.	NM_017675	exon6	c.T348C	p.D116D	GGAAGATAGAAAC	.	PASS	Atlas-SNP
OR2A5	393046	hgsc.bcm.edu	37	7	143748257	143748257	+	Missense_Mutation	SNP	G	G	A	rs6464574	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	83	148	1	0.497006	0.00675676	G|0.752;A|0.248	0.248	strong	OR2A5,NS,carcinoma,0,1	OR2A5	78	1	NM_012365	exon1	c.G763A	p.A255T	GGCAGCGCCATTG	.	scavenged	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	37	12	70963619	70963619	+	Missense_Mutation	SNP	G	G	A	rs2304821	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	117	248	0	0.491597	0	G|0.934;A|0.066	0.066	strong	.	PTPRB	676	.	NM_001109754	exon14	c.C3470T	p.T1157M	GACACCGTGTAGG	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254247	39254247	+	Nonsense_Mutation	SNP	A	A	T	rs137943557	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	63	117	0	0.484615	0	A|0.982;T|0.018	0.018	strong	.	KRTAP4-8	57	.	NM_031960	exon1	c.T90A	p.C30X	GGTCTGACAGCAG	.	PASS	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	37	3	186460110	186460110	+	Missense_Mutation	SNP	G	G	C	rs5030087	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	24	42	0	0.545455	0	G|0.963;C|0.037	0.037	strong	.	KNG1	129	.	NM_001102416	exon10	c.G1925C	p.G642A	CTGATGGCCTTTC	.	PASS	Atlas-SNP
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45994841	45994841	+	Missense_Mutation	SNP	A	A	C	rs7276273	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	27	58	0	0.457627	0	A|0.948;C|0.052	0.052	strong	.	KRTAP10-4	44	.	NM_198687	exon1	c.A1206C	p.X402C	CCTCTGACGCCCC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152277168	152277168	+	Silent	SNP	A	A	G	rs77811823		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	318	143	327	1	0.449686	0.0030581	.	.	weak	.	FLG	900	.	NM_002016	exon3	c.T10194C	p.S3398S	ATGGGCAGACTCA	.	PASS	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	37	2	160028693	160028693	+	Missense_Mutation	SNP	T	T	G	rs113262393	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	79	126	0	0.560284	0	T|0.993;G|0.007	0.007	strong	.	TANC1	157	.	NM_033394	exon11	c.T1413G	p.S471R	CACAAGTGCTTCC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214819044	214819044	+	Missense_Mutation	SNP	C	C	T	rs7533166	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	57	118	0	0.456	0	C|0.958;T|0.042	0.042	strong	.	CENPF	321	.	NM_016343	exon13	c.C6131T	p.S2044L	AGGACTCACAGGC	.	PASS	Atlas-SNP
RNF165	494470	hgsc.bcm.edu	37	18	44015315	44015315	+	Silent	SNP	A	A	G	rs139779598	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	34	58	0	0.492754	0	A|0.992;G|0.008	0.008	strong	.	RNF165	34	.	NM_152470	exon3	c.A441G	p.Q147Q	CGGCCAACTGCAG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1264890	1264890	+	Silent	SNP	A	A	G	rs12286473	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	619	223	421	1	0.360258	0.0023753	A|0.906;G|0.094	0.094	strong	.	MUC5B	473	.	NM_002458	exon31	c.A6780G	p.R2260R	CAGCAGAACCACC	.	PASS	Atlas-SNP
AKNAD1	254268	hgsc.bcm.edu	37	1	109394564	109394564	+	Silent	SNP	T	T	C	rs17030016	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	75	95	0	0.595238	0	T|0.935;C|0.065	0.065	strong	.	AKNAD1	83	.	NM_152763	exon2	c.A723G	p.A241A	TGAATTTGCTTTT	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133541575	133541575	+	Missense_Mutation	SNP	C	C	T	rs12611515	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	60	77	0	0.472441	0	C|0.618;T|0.382	0.382	strong	NCKAP5,NS,carcinoma,0,2	NCKAP5	322	2	NM_207363	exon14	c.G2809A	p.V937I	GGGAGACGGACCT	.	PASS	Atlas-SNP
MEGF6	1953	hgsc.bcm.edu	37	1	3512008	3512008	+	Silent	SNP	G	G	T	rs112138743	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	28	56	0	0.474576	0	G|0.993;T|0.007	0.007	strong	.	MEGF6	91	.	NM_001409	exon3	c.C270A	p.T90T	GTAGACGGTTCTA	.	PASS	Atlas-SNP
CTSE	1510	hgsc.bcm.edu	37	1	206327510	206327510	+	Silent	SNP	T	T	C	rs61742539	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	156	139	1	1	0.00719424	T|0.778;C|0.222	0.222	strong	.	CTSE	72	.	NM_001910	exon6	c.T699C	p.F233F	GATTTTTGGAGGC	.	PASS	Atlas-SNP
HHLA2	11148	hgsc.bcm.edu	37	3	108081277	108081277	+	Missense_Mutation	SNP	C	C	A	rs6779094	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	34	62	0	0.459459	0	C|0.868;A|0.132	0.132	strong	.	HHLA2	95	.	NM_007072	exon7	c.C1092A	p.S364R	TTGGAGCGTAAAA	.	PASS	Atlas-SNP
GPR146	115330	hgsc.bcm.edu	37	7	1097183	1097183	+	Missense_Mutation	SNP	G	G	A	rs11761941	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	62	141	0	0.473282	0	G|0.903;A|0.097	0.097	strong	.	GPR146	20	.	NM_138445	exon1	c.G32A	p.G11E	GCACAGGGCTGGT	.	PASS	Atlas-SNP
FKTN	2218	hgsc.bcm.edu	37	9	108397495	108397495	+	Missense_Mutation	SNP	A	A	G	rs41313301	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	98	213	0	0.502564	0	A|0.992;G|0.008	0.008	strong	.	FKTN	47	.	NM_006731	exon10	c.A1336G	p.N446D	CAACCCAATGGAA	.	PASS	Atlas-SNP
WIPF1	7456	hgsc.bcm.edu	37	2	175436496	175436496	+	Missense_Mutation	SNP	G	G	A	rs149434153	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	56	116	0	0.474576	0	G|0.999;A|0.001	0.001	strong	.	WIPF1	88	.	NM_003387	exon5	c.C1037T	p.P346L	AACGGGGGCGTGG	.	PASS	Atlas-SNP
GPLD1	2822	hgsc.bcm.edu	37	6	24437458	24437458	+	Missense_Mutation	SNP	T	T	C	rs1042303	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	37	80	0	0.560606	0	T|0.628;C|0.372	0.372	strong	.	GPLD1	91	.	NM_001503	exon21	c.A2080G	p.M694V	CGTACATGCGAGT	.	PASS	Atlas-SNP
SFRP2	6423	hgsc.bcm.edu	37	4	154709910	154709910	+	Silent	SNP	G	G	A	rs4076441	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	30	44	0	0.576923	0	G|0.966;A|0.034	0.034	strong	.	SFRP2	45	.	NM_003013	exon1	c.C78T	p.F26F	AAAGAGGAAGAGC	.	PASS	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	37	6	33136310	33136310	+	Missense_Mutation	SNP	G	G	T	rs2229784	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	52	99	0	0.477064	0	G|0.947;T|0.053	0.053	strong	.	COL11A2	124	.	NM_080680	exon54	c.C3946A	p.P1316T	CAAGTGGCCCTGG	.	PASS	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	37	19	39907036	39907036	+	Silent	SNP	C	C	T	rs2277743	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	22	70	0	0.366667	0	C|0.826;T|0.174	0.174	strong	.	PLEKHG2	329	.	NM_022835	exon5	c.C528T	p.A176A	TATTGCCGAGTGC	.	PASS	Atlas-SNP
ST3GAL4	6484	hgsc.bcm.edu	37	11	126277216	126277216	+	Silent	SNP	C	C	T	rs2230278	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	98	133	1	0.989899	0.0075188	C|0.657;T|0.343	0.343	strong	.	ST3GAL4	25	.	NM_001254757	exon5	c.C252T	p.Y84Y	TGCTTACGAGCTG	.	PASS	Atlas-SNP
PIGM	93183	hgsc.bcm.edu	37	1	160000435	160000435	+	Missense_Mutation	SNP	A	A	T	rs12409352	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	74	131	0	0.532374	0	A|0.892;T|0.108	0.108	strong	.	PIGM	27	.	NM_145167	exon1	c.T1095A	p.F365L	CCCTATAAACCAT	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89815152	89815152	+	Missense_Mutation	SNP	G	G	A	rs17233497	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	19	49	0	0.513514	0	G|0.954;A|0.046	0.046	strong	FANCA,lymph_node,lymphoid_neoplasm,0,1	FANCA	99	1	NM_000135	exon33	c.C3263T	p.S1088F	AGGACAGACGAAG	.	PASS	Atlas-SNP
OR52B6	340980	hgsc.bcm.edu	37	11	5602275	5602275	+	Missense_Mutation	SNP	A	A	G	rs1077126	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	111	192	0	0.464435	0	A|0.482;G|0.518	0.518	strong	.	OR52B6	37	.	NM_001005162	exon1	c.A169G	p.T57A	TACATCACTGCCC	.	PASS	Atlas-SNP
TULP3	7289	hgsc.bcm.edu	37	12	3047365	3047365	+	Missense_Mutation	SNP	G	G	C	rs34246393	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	62	121	0	0.525424	0	G|0.998;C|0.002	0.002	strong	.	TULP3	45	.	NM_003324	exon10	c.G1109C	p.S370T	GGAACAGTGACAC	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244171	244171	+	Silent	SNP	T	T	C	rs1128321	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	78	137	0	0.987342	0	T|0.201;C|0.799	0.799	strong	.	PSMD13	53	.	NM_175932	exon2	c.T226C	p.L76L	AACCCTTTGTCCC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1090343	1090343	+	Silent	SNP	T	T	C	rs12221966	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	45	143	0	0.351562	0	T|0.916;C|0.084	0.084	strong	.	MUC2	614	.	NM_002457	exon27	c.T3639C	p.C1213C	CGTGTGTACCAAC	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100681359	100681359	+	Missense_Mutation	SNP	C	C	G	rs11979706	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	100	78	1	1	0.0128205	C|0.379;G|0.621	0.621	strong	MUC17,NS,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.C6662G	p.P2221R	GCACTCCATTCAC	.	scavenged	Atlas-SNP
NNT	23530	hgsc.bcm.edu	37	5	43609343	43609343	+	Silent	SNP	C	C	T	rs10057103	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	149	145	1	0.986755	0.00689655	C|0.373;T|0.627	0.627	strong	NNT,NS,carcinoma,0,1	NNT	92	1	NM_182977	exon2	c.C46T	p.L16L	TGTCCTCTACTTA	.	PASS	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	37	2	1926488	1926488	+	Silent	SNP	C	C	T	rs13399855	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	104	180	0	0.522613	0	C|0.961;T|0.039	0.039	strong	MYT1L,NS,carcinoma,-1,1	MYT1L	241	1	NM_015025	exon10	c.G1053A	p.P351P	CTGCTGCGGATTC	.	PASS	Atlas-SNP
ATG9A	79065	hgsc.bcm.edu	37	2	220088468	220088468	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	44	61	0	0.483516	0	.	.	none	.	ATG9A	50	.	NM_001077198	exon10	c.T1438C	p.L480L	TCAGCAACTCTTC	.	PASS	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181548341	181548341	+	Silent	SNP	A	A	G	rs17443123	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	92	186	0	0.528736	0	A|0.910;G|0.090	0.090	strong	CACNA1E,NS,carcinoma,+2,1	CACNA1E	778	1	NM_001205293	exon5	c.A750G	p.A250A	TCGAGCATGCTTC	.	PASS	Atlas-SNP
NWD1	284434	hgsc.bcm.edu	37	19	16899865	16899865	+	Missense_Mutation	SNP	A	A	G	rs2608738	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	43	102	0	0.367521	0	A|0.798;G|0.202	0.202	strong	NWD1_ENST00000524140,colon,carcinoma,0,2	NWD1	303	2	NM_001007525	exon13	c.A2804G	p.H935R	CGCTGCACTTGTG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1307050	1307050	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	39	146	0	0.193069	0	.	.	none	.	TPSD1	47	.	NM_012217	exon3	c.C507T	p.D169D	GGGCGACGTGGAC	.	PASS	Atlas-SNP
TMTC4	84899	hgsc.bcm.edu	37	13	101315269	101315269	+	Silent	SNP	C	C	T	rs201804960	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	46	103	0	0.455446	0	C|0.996;T|0.004	0.004	strong	TMTC4,bladder,carcinoma,-1,5	TMTC4	103	5	NM_032813	exon5	c.G501A	p.A167A	CAGGGACGCCCTG	.	PASS	Atlas-SNP
MOCS1	4337	hgsc.bcm.edu	37	6	39881102	39881102	+	Missense_Mutation	SNP	A	A	T	rs7762875	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	41	101	0	0.506173	0	A|0.942;T|0.058	0.058	strong	.	MOCS1	87	.	NM_005943	exon5	c.T716A	p.L239H	AGGGGGAGGCCCT	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9001833	9001833	+	Missense_Mutation	SNP	A	A	G	rs12976122	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	153	188	0	1	0	A|0.353;G|0.647	0.647	strong	.	MUC16	4315	.	NM_024690	exon53	c.T40415C	p.M13472T	TCACTCATGGGTC	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	37	15	90335534	90335534	+	Silent	SNP	G	G	A	rs25652	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	91	190	0	0.43128	0	T|0.000;G|0.749;A|0.251	0.251	strong	.	ANPEP	124	.	NM_001150	exon18	c.C2385T	p.T795T	GTAGACGGTGGAC	.	PASS	Atlas-SNP
THNSL1	79896	hgsc.bcm.edu	37	10	25313254	25313254	+	Missense_Mutation	SNP	C	C	A	rs41279892	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	42	84	0	0.4375	0	C|0.984;A|0.016	0.016	strong	.	THNSL1	70	.	NM_024838	exon3	c.C1102A	p.P368T	ATCCCACCAAGTT	.	PASS	Atlas-SNP
TMCO6	55374	hgsc.bcm.edu	37	5	140023238	140023238	+	Missense_Mutation	SNP	C	C	G	rs17208187	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	87	191	0	0.517857	0	C|0.780;G|0.220	0.220	strong	.	TMCO6	30	.	NM_018502	exon8	c.C896G	p.T299S	AGAAAACCGAGGA	.	PASS	Atlas-SNP
NPEPL1	79716	hgsc.bcm.edu	37	20	57289017	57289017	+	Silent	SNP	C	C	T	rs35104993	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	42	77	0	0.442105	0	C|0.938;T|0.062	0.062	strong	NPEPL1,rectum,carcinoma,0,1	NPEPL1	36	1	NM_024663	exon10	c.C1170T	p.S390S	CAACAGCGCTGAG	.	PASS	Atlas-SNP
OR4C16	219428	hgsc.bcm.edu	37	11	55339676	55339676	+	Missense_Mutation	SNP	G	G	T	rs12800642	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	80	160	0	0.559441	0	G|0.817;T|0.183	0.183	strong	.	OR4C16	104	.	NM_001004701	exon1	c.G73T	p.V25L	AAAATAGTGTTTG	.	PASS	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	37	5	96116808	96116808	+	Silent	SNP	G	G	A	rs17481856	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	70	134	0	0.503597	0	G|0.917;A|0.083	0.083	strong	.	ERAP1	59	.	NM_001198541	exon17	c.C2542T	p.L848L	AGGCCAGTGGGTA	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	37	2	32690189	32690189	+	Silent	SNP	A	A	G	rs35682129	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	127	209	2	0.488462	0.00956938	A|0.932;G|0.068	0.068	strong	BIRC6_ENST00000421745,caecum,carcinoma,0,11	BIRC6	838	11	NM_016252	exon26	c.A5313G	p.Q1771Q	TCTTCAACCTCCG	.	scavenged	Atlas-SNP
ERP27	121506	hgsc.bcm.edu	37	12	15068620	15068620	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	45	110	0	0.473684	0	.	.	none	.	ERP27	37	.	NM_152321	exon6	c.A577T	p.I193F	AGAGAATCTGCAG	.	PASS	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	37	6	26104280	26104280	+	Silent	SNP	T	T	C	rs2229768	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	61	91	0	0.570093	0	T|0.790;C|0.210	0.210	strong	.	HIST1H4C	14	.	NM_003542	exon1	c.T105C	p.I35I	GGCTATTCGCCGT	.	PASS	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	37	22	21066897	21066897	+	Silent	SNP	G	G	A	rs60856465		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	142	265	0	0.860606	0	A|1.000;|0.000	1.000	weak	PI4KA_ENST00000255882,NS,carcinoma,0,2	PI4KA	313	2	NM_058004	exon50	c.C5679T	p.C1893C	CACCCCGCACTAG	.	scavenged	Atlas-SNP
POP7	10248	hgsc.bcm.edu	37	7	100304864	100304864	+	Silent	SNP	C	C	A	rs11559028	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	280	127	245	0	0.453571	0	A|0.035;C|0.965;G|0.000	0.035	strong	.	POP7	8	.	NM_005837	exon2	c.C411A	p.V137V	CAGGGTCACACCC	.	PASS	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	37	6	146755560	146755560	+	Silent	SNP	T	T	G	rs1047006	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	46	59	0	1	0	T|0.746;G|0.254	0.254	strong	GRM1,colon,carcinoma,0,2	GRM1	419	2	NM_000838	exon9	c.T3213G	p.P1071P	GCCACCTCCGCAG	.	PASS	Atlas-SNP
CLEC18A	348174	hgsc.bcm.edu	37	16	69988463	69988463	+	Missense_Mutation	SNP	C	C	G	rs78531533	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	362	43	330	0	0.118785	0	C|0.997;G|0.003	0.003	strong	CLEC18A,NS,carcinoid-endocrine_tumour,0,1	CLEC18A	9	1	NM_001271197	exon4	c.C443G	p.T148S	CCTGCACCCACTA	.	PASS	Atlas-SNP
ZNF687	57592	hgsc.bcm.edu	37	1	151259043	151259043	+	Silent	SNP	C	C	T	rs2298265	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	33	58	0	0.578947	0	C|0.892;T|0.108	0.108	strong	.	ZNF687	94	.	NM_020832	exon2	c.C276T	p.P92P	GTGTCCCGAGCAG	.	PASS	Atlas-SNP
IGLL1	3543	hgsc.bcm.edu	37	22	23915610	23915610	+	Missense_Mutation	SNP	A	A	T	rs111903752	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	124	171	0	0.58216	0	A|0.959;T|0.041	0.041	strong	IGLL1,extremity,malignant_melanoma,0,1	IGLL1	27	1	NM_020070	exon3	c.T485A	p.M162K	GTGGTCATCTCCA	.	PASS	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	37	5	5240002	5240002	+	Silent	SNP	C	C	A	rs11742370	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	40	97	0	0.506329	0	A|0.136;C|0.864;T|0.000	0.136	strong	.	ADAMTS16	543	.	NM_139056	exon16	c.C2487A	p.I829I	CTTAATCGCTACT	.	PASS	Atlas-SNP
HTR6	3362	hgsc.bcm.edu	37	1	19992513	19992513	+	Silent	SNP	C	C	T	rs1805054	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	58	77	0	0.644444	0	C|0.839;T|0.161	0.161	strong	.	HTR6	38	.	NM_000871	exon1	c.C267T	p.Y89Y	GCTGTACGGGCGC	.	PASS	Atlas-SNP
APOL1	8542	hgsc.bcm.edu	37	22	36661536	36661536	+	Silent	SNP	C	C	A	rs136174	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	62	100	0	0.568807	0	C|0.154;A|0.846	0.846	strong	.	APOL1	35	.	NM_145343	exon7	c.C702A	p.A234A	CACAGCCGCTTTG	.	PASS	Atlas-SNP
TMEM37	140738	hgsc.bcm.edu	37	2	120194674	120194674	+	Silent	SNP	C	C	T	rs72833258	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	28	37	0	0.636364	0	C|0.983;T|0.017	0.017	strong	.	TMEM37	40	.	NM_183240	exon2	c.C231T	p.G77G	CCTGGGCCAGGCC	.	PASS	Atlas-SNP
BTC	685	hgsc.bcm.edu	37	4	75719517	75719517	+	Missense_Mutation	SNP	A	A	C	rs28549760	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	14	9	11	0	0.642857	0	A|0.802;C|0.198	0.198	strong	BTC,NS,carcinoma,0,1	BTC	23	1	NM_001729	exon1	c.T19G	p.C7G	CGCTGCACCGGGC	.	PASS	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	37	9	712060	712060	+	Missense_Mutation	SNP	G	G	C	rs4465020	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	108	119	0	1	0	G|0.734;C|0.266	0.266	strong	KANK1_ENST00000382303,NS,carcinoma,0,2	KANK1	231	2	NM_001256876	exon7	c.G1294C	p.E432Q	CTTGTTGAGATGA	.	PASS	Atlas-SNP
SHISA4	149345	hgsc.bcm.edu	37	1	201860626	201860626	+	Missense_Mutation	SNP	A	A	G	rs2250377	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	103	132	0	0.980952	0	A|0.254;G|0.746	0.746	strong	.	SHISA4	9	.	NM_198149	exon4	c.A477G	p.I159M	CTTCATATACCCA	.	PASS	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	37	16	23635348	23635348	+	Missense_Mutation	SNP	A	A	C	rs45478192	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	43	110	0	0.361345	0	A|0.999;C|0.001	0.001	strong	.	PALB2	108	.	NM_024675	exon8	c.T2816G	p.L939W	ATTTCCAAATTTC	.	PASS	Atlas-SNP
DHX32	55760	hgsc.bcm.edu	37	10	127530325	127530325	+	Silent	SNP	T	T	C	rs3208565	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	52	124	0	0.409449	0	T|0.521;C|0.479	0.479	strong	DHX32,NS,carcinoma,0,1	DHX32	67	1	NM_018180	exon7	c.A1530G	p.A510A	CATGGCTGCGATT	.	PASS	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88787673	88787673	+	Missense_Mutation	SNP	G	G	A	rs35159887	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	37	64	0	0.506849	0	G|0.825;A|0.175	0.175	strong	PIEZO1,NS,carcinoma,0,1	PIEZO1	79	1	NM_001142864	exon39	c.C5569T	p.P1857S	CTTGGGGTTCTGG	.	PASS	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	37	20	61944193	61944193	+	Silent	SNP	T	T	C	rs4809530	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	67	151	0	0.458904	0	T|0.956;C|0.044	0.044	strong	.	COL20A1	137	.	NM_020882	exon16	c.T1983C	p.D661D	AGGGGATGCAGTC	.	PASS	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	37	11	78381156	78381156	+	Silent	SNP	G	G	A	rs139879711	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	120	209	0	0.542986	0	G|0.996;A|0.004	0.004	strong	ODZ4_ENST00000278550,NS,carcinoma,0,2	.	.	2	NM_001098816	exon32	c.C6234T	p.N2078N	ACGGGCGTTGACC	.	PASS	Atlas-SNP
COASY	80347	hgsc.bcm.edu	37	17	40714804	40714804	+	Missense_Mutation	SNP	C	C	A	rs615942	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	34	64	1	0.4	0.015625	C|0.512;A|0.488	0.488	strong	COASY,colon,carcinoma,0,1	COASY	45	1	NM_001042532	exon3	c.C251A	p.S84Y	CCCAGTCCAGCCC	.	scavenged	Atlas-SNP
HINT3	135114	hgsc.bcm.edu	37	6	126278230	126278230	+	Missense_Mutation	SNP	G	G	C	rs2295005	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	32	68	0	0.470588	0	G|0.358;C|0.642	0.642	strong	HINT3,NS,carcinoma,0,1	HINT3	14	1	NM_138571	exon1	c.G107C	p.G36A	CCGCTGGCAAGTC	.	PASS	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	37	14	91760522	91760522	+	Silent	SNP	C	C	T	rs12891713	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	78	183	0	0.410526	0	C|0.823;T|0.177	0.177	strong	.	CCDC88C	192	.	NM_001080414	exon23	c.G4107A	p.Q1369Q	CATGTACTGCTTC	.	PASS	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	37	1	10709441	10709441	+	Silent	SNP	C	C	T	rs284299	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	72	163	0	0.5	0	T|0.279;C|0.721	0.279	strong	CASZ1,NS,carcinoma,0,1	CASZ1	150	1	NM_001079843	exon14	c.G2934A	p.A978A	CCCCTCCGCTTCC	.	PASS	Atlas-SNP
CATSPER2	117155	hgsc.bcm.edu	37	15	43928340	43928340	+	Missense_Mutation	SNP	C	C	G	rs146701338	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	459	192	394	0	0.418301	0	C|0.997;G|0.003	0.003	strong	.	CATSPER2	49	.	NM_054020	exon8	c.G920C	p.W307S	ACCTTCCAGACGT	.	PASS	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	37	11	17419279	17419279	+	Silent	SNP	C	C	T	rs1799859	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	61	57	0	1	0	C|0.611;T|0.389	0.389	strong	.	ABCC8	170	.	NM_000352	exon31	c.G3819A	p.R1273R	GAGCTCCCTGTGC	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23907909	23907909	+	Missense_Mutation	SNP	A	A	G	rs17078605	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	62	140	0	0.43662	0	A|0.769;G|0.231	0.231	strong	.	SACS	871	.	NM_014363	exon10	c.T10106C	p.V3369A	GTTTGGACCATAT	.	PASS	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	37	20	6088265	6088265	+	Missense_Mutation	SNP	G	G	A	rs62200482	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	107	188	0	0.527094	0	G|0.936;A|0.064	0.064	strong	.	FERMT1	106	.	NM_017671	exon6	c.C763T	p.R255C	GGGAGCGTGAGGA	.	PASS	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	37	1	201193964	201193964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	58	145	0	0.471545	0	.	.	none	IGFN1_ENST00000335211,NS,carcinoma,+1,2	IGFN1	220	2	NM_001164586	exon21	c.G10448C	p.G3483A	TGCAGGGGAAGGA	.	PASS	Atlas-SNP
PLCXD1	55344	hgsc.bcm.edu	37	X	200939	200939	+	Missense_Mutation	SNP	C	C	T	rs146939120	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	343	169	376	1	0.492711	0.00265957	C|0.995;T|0.005	0.005	strong	.	PLCXD1	18	.	NM_018390	exon2	c.C85T	p.P29S	CTGTGTCCCCGGC	.	PASS	Atlas-SNP
CYP2A7	1549	hgsc.bcm.edu	37	19	41386147	41386147	+	Missense_Mutation	SNP	C	C	T	rs143990356	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	90	203	0	0.428571	0	C|1.000;T|0.000	0.000	strong	.	CYP2A7	71	.	NM_000764	exon4	c.G496A	p.A166T	TATTGGCGCCTGC	.	PASS	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	37	12	30823971	30823971	+	Silent	SNP	A	A	G	rs1054426	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	63	177	0	0.366279	0	A|0.447;G|0.553	0.553	strong	.	IPO8	105	.	NM_006390	exon9	c.T969C	p.L323L	TTGCTGAAGAACA	.	PASS	Atlas-SNP
C6orf25	80739	hgsc.bcm.edu	37	6	31691657	31691657	+	Silent	SNP	G	G	A	rs453098	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	26	62	0	0.52	0	G|0.882;A|0.118	0.118	strong	C6orf25_ENST00000375806,NS,carcinoma,0,4	C6orf25	52	4	NM_138277	exon2	c.G303A	p.G101G	CGCGGGGGACTCG	.	PASS	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	37	17	78935197	78935197	+	Silent	SNP	C	C	T	rs9899178	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	17	36	0	0.447368	0	C|0.703;T|0.297	0.297	strong	.	RPTOR	122	.	NM_020761	exon31	c.C3609T	p.R1203R	CAGCCGCGTCATG	.	PASS	Atlas-SNP
SH2D3A	10045	hgsc.bcm.edu	37	19	6763718	6763718	+	Silent	SNP	A	A	G	rs2305805	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	36	64	0	0.493151	0	A|0.742;G|0.258	0.258	strong	.	SH2D3A	53	.	NM_005490	exon2	c.T42C	p.P14P	GTACCAAGGTTGG	.	PASS	Atlas-SNP
KANK3	256949	hgsc.bcm.edu	37	19	8398006	8398006	+	Missense_Mutation	SNP	C	C	T	rs7249069	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	94	151	0	0.546512	0	C|0.939;T|0.061	0.061	strong	.	KANK3	35	.	NM_198471	exon7	c.G1828A	p.E610K	GCAGTTCGGGTCC	.	PASS	Atlas-SNP
FZD10	11211	hgsc.bcm.edu	37	12	130648576	130648576	+	Silent	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	55	78	0	0.533981	0	.	.	none	FZD10,NS,carcinoma,0,1	FZD10	95	1	NM_007197	exon1	c.G1089T	p.A363A	CCCGGCGGTGAAG	.	PASS	Atlas-SNP
PSG1	5669	hgsc.bcm.edu	37	19	43382402	43382402	+	Silent	SNP	G	G	A	rs17423717	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	8	247	0	0.0325203	0	G|0.996;A|0.004	0.004	strong	PSG1_ENST00000312439,NS,carcinoma,-1,4	PSG1	196	4	NM_001184826	exon2	c.C93T	p.P31P	AGTGGTGGGCAGG	.	scavenged	Atlas-SNP
GLT1D1	144423	hgsc.bcm.edu	37	12	129360498	129360498	+	Silent	SNP	G	G	A	rs482401	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	69	137	0	0.46	0	G|0.706;A|0.294	0.294	strong	.	GLT1D1	48	.	NM_144669	exon2	c.G108A	p.K36K	TTTGAAGGATGCC	.	PASS	Atlas-SNP
TNPO3	23534	hgsc.bcm.edu	37	7	128607384	128607384	+	Silent	SNP	G	G	A	rs8043	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	205	227	2	1	0.00881057	G|0.504;N|0.000	.	strong	.	TNPO3	148	.	NM_012470	exon21	c.C2661T	p.A887A	TGTGACGGCTCCC	.	PASS	Atlas-SNP
OR52N1	79473	hgsc.bcm.edu	37	11	5809990	5809990	+	Silent	SNP	G	G	A	rs11039038	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	18	29	0	0.529412	0	G|0.916;A|0.084	0.084	strong	.	OR52N1	70	.	NM_001001913	exon1	c.C57T	p.I19I	ACCAGGGATGCCA	.	PASS	Atlas-SNP
AS3MT	57412	hgsc.bcm.edu	37	10	104638723	104638723	+	Missense_Mutation	SNP	T	T	C	rs11191439	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	46	92	0	0.511111	0	T|0.914;C|0.086	0.086	strong	.	AS3MT	17	.	NM_020682	exon9	c.T860C	p.M287T	AACTAATGTTTGA	.	PASS	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	60503350	60503350	+	Missense_Mutation	SNP	A	A	G	rs6142884	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	34	26	0	1	0	A|0.508;G|0.492	0.492	strong	.	CDH4	172	.	NM_001794	exon12	c.A1874G	p.K625R	GCGAGAAGCCCAA	.	PASS	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	37	11	3733899	3733899	+	Silent	SNP	C	C	T	rs35803045	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	60	129	0	0.521739	0	C|0.946;T|0.054	0.054	strong	.	NUP98	149	.	NM_005387	exon20	c.G2688A	p.P896P	TTTAGACGGATGC	.	PASS	Atlas-SNP
OR5K2	402135	hgsc.bcm.edu	37	3	98217178	98217178	+	Nonsense_Mutation	SNP	T	T	A	rs55639376	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	128	205	0	0.549356	0	T|0.847;A|0.153	0.153	strong	.	OR5K2	56	.	NM_001004737	exon1	c.T654A	p.Y218X	ATCTTATCTCTAT	.	PASS	Atlas-SNP
CD5	921	hgsc.bcm.edu	37	11	60886913	60886913	+	Missense_Mutation	SNP	C	C	T	rs2241002	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	45	76	0	0.576923	0	C|0.799;T|0.201	0.201	strong	.	CD5	52	.	NM_014207	exon5	c.C671T	p.P224L	AAGACCCAGGGGA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179659912	179659912	+	Missense_Mutation	SNP	G	G	A	rs16866538	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	42	82	0	0.5	0	G|0.845;A|0.155	0.155	strong	TTN_ENST00000360870,NS,carcinoma,+1,16	TTN	18412	16	NM_001267550	exon7	c.C982T	p.R328C	TCTTACGCATGAG	.	PASS	Atlas-SNP
ATXN3L	92552	hgsc.bcm.edu	37	X	13337115	13337115	+	Silent	SNP	C	C	T	rs17322143	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	113	155	1	0.982609	0.00645161	C|0.905;0|0.032	.	strong	.	ATXN3L	64	.	NM_001135995	exon1	c.G939A	p.R313R	TGTTGGCCTTTCG	.	PASS	Atlas-SNP
SENP7	57337	hgsc.bcm.edu	37	3	101080694	101080694	+	Silent	SNP	T	T	C	rs7616677	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	146	192	1	0.993197	0.00520833	T|0.604;C|0.396	0.396	strong	.	SENP7	170	.	NM_020654	exon11	c.A1488G	p.E496E	GCATAATTCAGAT	.	PASS	Atlas-SNP
KRTAP7-1	337878	hgsc.bcm.edu	37	21	32201866	32201866	+	Missense_Mutation	SNP	A	A	G	rs9982755	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	195	196	0	1	0	A|0.480;G|0.520	0.520	strong	.	.	.	.	NM_181606	exon2	c.T151C	p.S51P	CCAGGGAGCTGTA	.	PASS	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	37	13	36686138	36686138	+	Silent	SNP	T	T	C	rs3748308	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	49	119	0	0.433628	0	T|0.765;C|0.235	0.235	strong	.	DCLK1	350	.	NM_004734	exon3	c.A591G	p.P197P	TTTCCGTGGCTTC	.	PASS	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40363020	40363020	+	Missense_Mutation	SNP	G	G	A	rs741143	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	41	46	0	0.803922	0	G|0.749;A|0.251	0.251	strong	FCGBP,NS,carcinoma,-1,1	FCGBP	416	1	NM_003890	exon32	c.C15050T	p.A5017V	CCGGGCGCCCGCC	.	PASS	Atlas-SNP
OR10H5	284433	hgsc.bcm.edu	37	19	15905661	15905661	+	Missense_Mutation	SNP	C	C	A	rs67455341	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	107	170	0	0.467249	0	C|0.733;A|0.267	0.267	strong	.	OR10H5	49	.	NM_001004466	exon1	c.C803A	p.S268Y	CCCAGTCTCCGGA	.	PASS	Atlas-SNP
ARHGDIB	397	hgsc.bcm.edu	37	12	15095558	15095558	+	Silent	SNP	C	C	G	rs4703	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	43	71	0	0.589041	0	C|0.500;G|0.500	0.500	strong	.	ARHGDIB	33	.	NM_001175	exon6	c.G504C	p.A168A	GCCTCGCGCCAGC	.	PASS	Atlas-SNP
SLBP	7884	hgsc.bcm.edu	37	4	1701317	1701317	+	Silent	SNP	G	G	A	rs2247341	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	250	129	228	0	0.516	0	G|0.647;T|0.001	.	strong	.	SLBP	12	.	NM_006527	exon5	c.C453T	p.Y151Y	ACGATCGTAGGCA	.	PASS	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	37	4	44176960	44176960	+	Silent	SNP	T	T	C	rs13143747	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	127	275	0	0.51626	0	T|0.929;C|0.071	0.071	strong	KCTD8,NS,carcinoma,-1,1	KCTD8	96	1	NM_198353	exon2	c.A1269G	p.T423T	CAGATTTGTTTCC	.	PASS	Atlas-SNP
OR4A47	403253	hgsc.bcm.edu	37	11	48511050	48511050	+	Missense_Mutation	SNP	T	T	C	rs76991989	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	62	150	0	0.442857	0	T|0.981;C|0.019	0.019	strong	OR4A47,bladder,carcinoma,-1,1	OR4A47	72	1	NM_001005512	exon1	c.T706C	p.S236P	GCCCTCTCAACCT	.	PASS	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	37	5	179071836	179071836	+	Silent	SNP	C	C	T	rs4990391	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	52	110	3	0.284153	0.0272727	C|0.848;T|0.152	0.152	strong	C5orf60,colon,carcinoma,0,1	C5orf60	24	1	NM_001142306	exon1	c.G186A	p.P62P	TGAGGACGGCTCC	.	scavenged	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9072296	9072296	+	Silent	SNP	G	G	T	rs7254970	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	46	80	0	0.422018	0	G|0.815;T|0.185	0.185	strong	.	MUC16	4315	.	NM_024690	exon3	c.C15150A	p.T5050T	AGGTGTGGTCATT	.	PASS	Atlas-SNP
LRRC45	201255	hgsc.bcm.edu	37	17	79986156	79986156	+	Missense_Mutation	SNP	C	C	T	rs72861736	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	59	112	0	0.440298	0	C|0.935;T|0.065	0.065	strong	LRRC45,NS,carcinoma,0,1	LRRC45	22	1	NM_144999	exon10	c.C1094T	p.A365V	CTGCTGCCAATGA	.	PASS	Atlas-SNP
TCOF1	6949	hgsc.bcm.edu	37	5	149772280	149772280	+	Missense_Mutation	SNP	C	C	G	rs1136103	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	27	64	0	0.45	0	C|0.855;G|0.145	0.145	strong	.	TCOF1	154	.	NM_001135243	exon22	c.C3527G	p.P1176R	CCACCCCCTCCAG	.	PASS	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	37	19	57050515	57050515	+	Missense_Mutation	SNP	C	C	G	rs7258088	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	38	37	0	1	0	C|0.610;G|0.390	0.390	strong	ZFP28,NS,carcinoma,0,3	ZFP28	99	3	NM_020828	exon1	c.C128G	p.A43G	TCCCTGCCCGGGG	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85974236	85974236	+	Silent	SNP	T	T	C	rs3814213	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	17	47	0	0.34	0	T|0.409;C|0.591	0.591	strong	.	CDHR1	122	.	NM_033100	exon17	c.T2439C	p.T813T	GCCTACTGTCTCT	.	PASS	Atlas-SNP
COL6A1	1291	hgsc.bcm.edu	37	21	47423509	47423509	+	Missense_Mutation	SNP	C	C	T	rs13051496	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	59	60	0	0.621053	0	C|0.849;T|0.151	0.151	strong	COL6A1,NS,carcinoma,0,1	COL6A1	101	1	NM_001848	exon35	c.C2669T	p.S890L	GGGCGTCGCTGCA	.	PASS	Atlas-SNP
RAPGEF2	9693	hgsc.bcm.edu	37	4	160277276	160277276	+	Silent	SNP	C	C	T	rs1135004	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	32	59	0	0.516129	0	C|0.575;T|0.425	0.425	strong	.	RAPGEF2	171	.	NM_014247	exon23	c.C4440T	p.P1480P	CGCCCCCTATCAG	.	PASS	Atlas-SNP
KRTAP10-5	386680	hgsc.bcm.edu	37	21	45999753	45999753	+	Missense_Mutation	SNP	C	C	G	rs464424	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	36	72	0	0.423529	0	C|0.913;G|0.087	0.087	strong	.	KRTAP10-5	43	.	NM_198694	exon1	c.G703C	p.V235L	TGGGCACGCAGCA	.	PASS	Atlas-SNP
OR2V2	285659	hgsc.bcm.edu	37	5	180582604	180582604	+	Missense_Mutation	SNP	A	A	G	rs2546423	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	320	152	302	0	0.475	0	A|0.376;G|0.624	0.624	strong	.	OR2V2	56	.	NM_206880	exon1	c.A662G	p.H221R	ATGCTCACATTCT	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	37	18	56246682	56246682	+	Silent	SNP	T	T	G	rs114432784	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	73	162	0	0.540741	0	T|0.981;G|0.019	0.019	strong	.	ALPK2	487	.	NM_052947	exon4	c.A1326C	p.S442S	TGTCACTGAAGAC	.	PASS	Atlas-SNP
MED27	9442	hgsc.bcm.edu	37	9	134955076	134955076	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	7	140	0	0.04375	0	.	.	none	MED27,NS,carcinoma,0,3	MED27	37	3	NM_001253881	exon1	c.T156C	p.F52F	CGCAATAAAGGCC	.	scavenged	Atlas-SNP
DNMBP	23268	hgsc.bcm.edu	37	10	101639877	101639877	+	Missense_Mutation	SNP	A	A	C	rs11190305	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	243	266	0	0.991837	0	A|0.708;C|0.292	0.292	strong	.	DNMBP	173	.	NM_015221	exon16	c.T4239G	p.C1413W	TTGGTCACATTCT	.	PASS	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	37	9	101340316	101340316	+	Silent	SNP	T	T	C	rs3750344	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	61	87	0	0.539823	0	T|0.809;C|0.191	0.191	strong	.	GABBR2	126	.	NM_005458	exon2	c.A360G	p.A120A	TTTTATTGCATCG	.	PASS	Atlas-SNP
SLX4IP	128710	hgsc.bcm.edu	37	20	10603750	10603750	+	Missense_Mutation	SNP	G	G	A	rs6077853	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	56	91	1	0.482759	0.010989	G|0.904;A|0.096	0.096	strong	C20orf94,NS,carcinoma,+1,1	.	.	1	NM_001009608	exon8	c.G950A	p.R317Q	GTGATCGATTAGT	.	scavenged	Atlas-SNP
SLC9A1	6548	hgsc.bcm.edu	37	1	27480757	27480757	+	Silent	SNP	A	A	G	rs34306208	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	49	83	0	0.556818	0	A|0.711;G|0.289	0.289	strong	.	SLC9A1	68	.	NM_003047	exon1	c.T69C	p.V23V	CAAAGCAACCACC	.	PASS	Atlas-SNP
GAS2L1	10634	hgsc.bcm.edu	37	22	29704627	29704627	+	Missense_Mutation	SNP	C	C	T	rs191844093	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	20	15	0	0.588235	0	C|0.996;T|0.004	0.004	strong	.	GAS2L1	54	.	NM_152237	exon2	c.C532T	p.P178S	AACGCCCCTGCCG	.	PASS	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	37	5	102433409	102433409	+	Missense_Mutation	SNP	G	G	A	rs34813	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	36	96	0	0.439024	0	G|0.705;A|0.295	0.295	strong	GIN1,NS,carcinoma,0,1	GIN1	53	1	NM_017676	exon5	c.C716T	p.T239M	CTTTCCGTTGGGT	.	PASS	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	37	4	177098285	177098285	+	Missense_Mutation	SNP	G	G	A	rs17625943	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	31	62	0	0.563636	0	G|0.743;A|0.257	0.257	strong	WDR17,rectum,carcinoma,-1,1	WDR17	198	1	NM_170710	exon29	c.G3643A	p.A1215T	TGGAGAGCTTGCA	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371112	240371112	+	Silent	SNP	G	G	T	rs71646889	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	28	87	0	0.243478	0	A|0.000;G|0.879;T|0.121	0.121	strong	FMN2,NS,carcinoma,0,4	FMN2	451	4	NM_020066	exon5	c.G3000T	p.P1000P	CCCTCCGCCCCCA	.	PASS	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73492027	73492027	+	Silent	SNP	G	G	A	rs111033453	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	51	117	0	0.463636	0	G|0.998;A|0.002	0.002	strong	.	CDH23	365	.	NM_022124	exon31	c.G3999A	p.V1333V	GATTGTGCGGGTC	.	PASS	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	37	7	42088222	42088222	+	Missense_Mutation	SNP	T	T	C	rs846266	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	184	191	0	0.989247	0	T|0.354;G|0.001	.	strong	.	GLI3	312	.	NM_000168	exon5	c.A547G	p.T183A	CAGCAGTGGGGTT	.	PASS	Atlas-SNP
SHC4	399694	hgsc.bcm.edu	37	15	49127134	49127134	+	Silent	SNP	G	G	A	rs1426199	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	72	102	0	0.549618	0	G|0.918;A|0.082	0.082	strong	.	SHC4	70	.	NM_203349	exon11	c.C1569T	p.S523S	TTCTTCGCTCCAC	.	PASS	Atlas-SNP
GRAMD1C	54762	hgsc.bcm.edu	37	3	113655207	113655207	+	Silent	SNP	C	C	T	rs3765114	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	48	74	0	0.5	0	C|0.756;T|0.244	0.244	strong	.	GRAMD1C	71	.	NM_017577	exon14	c.C1551T	p.N517N	CTTCAACCGAACA	.	PASS	Atlas-SNP
ENTHD2	146705	hgsc.bcm.edu	37	17	79204447	79204447	+	Missense_Mutation	SNP	C	C	T	rs143572077	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	57	102	0	0.527778	0	C|1.000;T|0.000	0.000	weak	.	.	.	.	NM_144679	exon11	c.G926A	p.S309N	TCGCTGCTCCCCA	.	PASS	Atlas-SNP
HHLA1	10086	hgsc.bcm.edu	37	8	133108005	133108005	+	Silent	SNP	A	A	G	rs55906165	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	34	56	0	0.459459	0	A|0.947;G|0.053	0.053	strong	.	HHLA1	35	.	NM_001145095	exon5	c.T309C	p.S103S	AGTGACACTCAGC	.	PASS	Atlas-SNP
DBNL	28988	hgsc.bcm.edu	37	7	44100497	44100497	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	2	87	0	0.019802	0	.	.	none	DBNL,colon,carcinoma,0,1	DBNL	26	1	NM_001122956	exon13	c.C1302T	p.Y434Y	CAACTACGTGGAG	.	scavenged	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151671182	151671182	+	Silent	SNP	C	C	T	rs41289369	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	31	74	0	0.534483	0	C|0.962;T|0.038	0.038	strong	.	AKAP12	170	.	NM_005100	exon4	c.C1656T	p.A552A	TCCAGCCGATTCT	.	PASS	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108389111	108389111	+	Silent	SNP	A	A	G	rs3802553	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	48	81	0	0.527473	0	A|0.841;G|0.159	0.159	strong	.	SORCS1	534	.	NM_001206572	exon19	c.T2511C	p.F837F	ATCGCCAAAGTCC	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1262907	1262907	+	Silent	SNP	T	T	C	rs2037089	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	58	110	0	0.504348	0	T|0.797;C|0.203	0.203	strong	.	MUC5B	473	.	NM_002458	exon31	c.T4797C	p.S1599S	CTGCAGTGACGAC	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1252441	1252441	+	Missense_Mutation	SNP	T	T	C	rs4984636	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	7	22	0	0.411765	0	T|0.874;C|0.126	0.126	strong	CACNA1H_ENST00000358590,rectum,carcinoma,0,2	CACNA1H	317	2	NM_021098	exon9	c.T1991C	p.V664A	ATGTGGTCGGGGA	.	PASS	Atlas-SNP
VN1R1	57191	hgsc.bcm.edu	37	19	57967049	57967049	+	Missense_Mutation	SNP	G	G	T	rs61744949	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	287	325	1	0.99308	0.00307692	G|0.675;T|0.325	0.325	strong	.	VN1R1	48	.	NM_020633	exon1	c.C806A	p.A269D	GCTCTGGCTTCCT	.	PASS	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	37	19	39908574	39908574	+	Silent	SNP	C	C	T	rs35466645	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	25	48	0	0.480769	0	C|0.847;T|0.153	0.153	strong	.	PLEKHG2	329	.	NM_022835	exon9	c.C912T	p.T304T	CTGGACCGGACCA	.	PASS	Atlas-SNP
PRKCB	5579	hgsc.bcm.edu	37	16	24202458	24202458	+	Silent	SNP	C	C	T	rs3729904	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	41	93	0	0.42268	0	C|0.765;T|0.235	0.235	strong	PRKCB_ENST00000321728,NS,carcinoma,+2,3	PRKCB	383	3	NM_212535	exon16	c.C1770T	p.G590G	TGAAGGCGAACGT	.	PASS	Atlas-SNP
CYP2C19	1557	hgsc.bcm.edu	37	10	96534922	96534922	+	Missense_Mutation	SNP	G	G	C	rs17878459	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	113	318	0	0.388316	0	C|0.018;G|0.982	0.018	strong	.	CYP2C19	88	.	NM_000769	exon2	c.G276C	p.E92D	TGGAGAGGAGTTT	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	15	97	2	0.137615	0.0206186	.	.	weak	EP400,NS,carcinoma,0,20	EP400	370	20	NM_015409	exon47	c.G8175A	p.Q2725Q	GCAGCAGCAACAA	.	scavenged	Atlas-SNP
IFT81	28981	hgsc.bcm.edu	37	12	110566907	110566907	+	Missense_Mutation	SNP	A	A	G	rs34684319	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	24	50	0	0.45283	0	A|0.984;G|0.016	0.016	strong	.	IFT81	86	.	NM_014055	exon4	c.A401G	p.D134G	TTCAGGATGAAAC	.	PASS	Atlas-SNP
CMBL	134147	hgsc.bcm.edu	37	5	10282333	10282333	+	Silent	SNP	A	A	G	rs115129340	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	68	132	0	0.377778	0	A|0.990;G|0.010	0.010	strong	.	CMBL	24	.	NM_138809	exon5	c.T534C	p.N178N	AACATCATTTTCA	.	PASS	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	37	19	21300284	21300284	+	Missense_Mutation	SNP	A	A	G	rs140003541	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	35	53	0	0.432099	0	A|0.990;G|0.010	0.010	strong	.	ZNF714	121	.	NM_182515	exon5	c.A814G	p.T272A	GCCCTTACTACAC	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	868115	868115	+	Missense_Mutation	SNP	C	C	T	rs13090	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	27	55	0	0.442623	0	C|0.702;T|0.298	0.298	strong	MED16,NS,carcinoma,0,1	MED16	61	1	NM_005481	exon16	c.G2620A	p.E874K	GGTCCTCTGGATG	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1016849	1016849	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1063	51	1298	46	0.0479774	0.0354391	.	.	none	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.G5952C	p.M1984I	TGCAGTCATAGGA	.	scavenged	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	37	20	6096632	6096632	+	Silent	SNP	G	G	A	rs1056141	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	79	122	0	0.632	0	G|0.894;A|0.106	0.106	strong	.	FERMT1	106	.	NM_017671	exon3	c.C211T	p.L71L	TTTTCAGAAGCCA	.	PASS	Atlas-SNP
BEST3	144453	hgsc.bcm.edu	37	12	70048829	70048829	+	Missense_Mutation	SNP	T	T	C	rs17106884	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	60	120	0	0.437956	0	T|0.955;C|0.045	0.045	strong	BEST3_ENST00000330891,NS,carcinoma,0,1	BEST3	129	1	NM_032735	exon10	c.A1865G	p.E622G	GATGTTTCTGTGT	.	PASS	Atlas-SNP
CHPT1	56994	hgsc.bcm.edu	37	12	102108301	102108301	+	Silent	SNP	T	T	C	rs2066920	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	99	163	0	0.478261	0	C|0.107;T|0.893	0.107	strong	.	CHPT1	27	.	NM_020244	exon3	c.T441C	p.A147A	GGGAGCTTCAATT	.	PASS	Atlas-SNP
PASK	23178	hgsc.bcm.edu	37	2	242072357	242072357	+	Silent	SNP	G	G	A	rs34401965	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	55	86	0	0.466102	0	G|0.925;A|0.075	0.075	strong	.	PASK	230	.	NM_015148	exon9	c.C1395T	p.T465T	AGTCCCGGTGAAG	.	PASS	Atlas-SNP
TSC22D4	81628	hgsc.bcm.edu	37	7	100064719	100064719	+	Silent	SNP	A	A	G	rs7806537	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	88	148	0	0.533333	0	A|0.644;G|0.356	0.356	strong	TSC22D4,NS,carcinoma,0,1	TSC22D4	28	1	NM_030935	exon5	c.T1051C	p.L351L	CCGCCAATTCCCG	.	PASS	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	37	3	186459927	186459927	+	Missense_Mutation	SNP	T	T	C	rs710446	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	236	241	0	1	0	T|0.573;G|0.006	.	strong	KNG1_ENST00000265023,NS,carcinoma,0,1	KNG1	129	1	NM_001102416	exon10	c.T1742C	p.I581T	CTCCCATACAGAG	.	PASS	Atlas-SNP
RABGEF1	27342	hgsc.bcm.edu	37	7	66274184	66274184	+	Silent	SNP	G	G	A	rs61758774	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	61	142	0	0.491935	0	G|0.995;A|0.005	0.005	strong	.	RABGEF1	56	.	NM_014504	exon9	c.G1389A	p.P463P	GCCTCCGAATCAA	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10348354	10348354	+	Missense_Mutation	SNP	T	T	C	rs2277649	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	96	242	0	0.448598	0	T|0.644;C|0.356	0.356	strong	.	MYH4	349	.	NM_017533	exon37	c.A5405G	p.D1802G	GCCTCATCCAGAC	.	PASS	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	37	14	60932752	60932752	+	Missense_Mutation	SNP	G	G	A	rs12586711	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	22	10	19	0	0.454545	0	G|0.800;A|0.200	0.200	strong	.	C14orf39	79	.	NM_174978	exon11	c.C917T	p.A306V	TGCTTCGCAGAAC	.	PASS	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	37	1	145561116	145561116	+	Silent	SNP	G	G	A	rs11578772	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	50	92	0	0.480769	0	G|0.922;A|0.078	0.078	strong	.	ANKRD35	96	.	NM_144698	exon10	c.G804A	p.Q268Q	GCCCCAGGCAGGT	.	PASS	Atlas-SNP
OR10G8	219869	hgsc.bcm.edu	37	11	123901175	123901175	+	Silent	SNP	C	C	A	rs11825515	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	88	207	0	0.451282	0	A|0.066;C|0.934;T|0.000	0.066	strong	OR10G8,middle_lobe,carcinoma,+1,2	OR10G8	132	2	NM_001004464	exon1	c.C846A	p.L282L	CCTTCTCAACCCT	.	PASS	Atlas-SNP
TMCO3	55002	hgsc.bcm.edu	37	13	114154419	114154419	+	Silent	SNP	G	G	A	rs2260159	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	61	113	0	0.388535	0	G|0.796;A|0.204	0.204	strong	.	TMCO3	77	.	NM_017905	exon4	c.G771A	p.K257K	GACCAAGCCCAGA	.	PASS	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52876385	52876385	+	Missense_Mutation	SNP	G	G	A	rs14048	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	39	118	0	0.361111	0	G|0.941;A|0.059	0.059	strong	.	ZNF880	45	.	NM_001145434	exon2	c.G34A	p.V12M	AGGGACGTGGCCA	.	PASS	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49723784	49723784	+	Silent	SNP	C	C	A	rs9713651	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	152	170	1	0.625514	0.00588235	C|0.562;A|0.438	0.438	strong	.	MST1	84	.	NM_020998	exon8	c.G978T	p.P326P	CTGATGCGGGATT	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113364697	113364697	+	Missense_Mutation	SNP	T	T	C	rs139786530	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	48	135	0	0.340426	0	T|0.999;C|0.001	0.001	strong	CSMD3_ENST00000343508,NS,carcinoma,0,2	CSMD3	2325	2	NM_198123	exon39	c.A6203G	p.Y2068C	ACCATATATCTGT	.	PASS	Atlas-SNP
FARSA	2193	hgsc.bcm.edu	37	19	13035722	13035722	+	Missense_Mutation	SNP	T	T	C	rs35087277	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	45	101	0	0.409091	0	T|0.980;C|0.020	0.020	strong	.	FARSA	46	.	NM_004461	exon9	c.A1022G	p.Q341R	ACCTTCTGGGCAA	.	PASS	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	37	7	87160618	87160618	+	Missense_Mutation	SNP	A	A	C	rs2032582	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	68	133	0	0.519084	0	T|0.004;G|0.002;C|0.656;A|0.337	0.656	strong	ABCB1,NS,carcinoma,+1,1	ABCB1	263	1	NM_000927	exon22	c.T2677G	p.S893A	TCCCAGAACCTTC	.	PASS	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	37	8	118819578	118819578	+	Silent	SNP	C	C	T	rs7837891	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	58	112	0	0.513274	0	C|0.659;T|0.341	0.341	strong	.	EXT1	98	.	NM_000127	exon9	c.G1761A	p.E587E	AATCCTCTCAGGG	.	PASS	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	37	X	117676909	117676909	+	Silent	SNP	A	A	G	rs17326744	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	56	50	0	0.982456	0	A|0.929;0|0.016	.	strong	.	DOCK11	185	.	NM_144658	exon3	c.A240G	p.Q80Q	TCGTCAACGCAGA	.	PASS	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	37	19	1004844	1004844	+	Silent	SNP	T	T	C	rs4806909	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	15	38	0	0.454545	0	T|0.639;C|0.361	0.361	strong	GRIN3B,rectum,carcinoma,0,1	GRIN3B	46	1	NM_138690	exon3	c.T1344C	p.P448P	GGACCCTGGCACC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179606590	179606590	+	Silent	SNP	T	T	C	rs72648918	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	31	50	0	0.492063	0	T|0.999;C|0.001	0.001	strong	.	TTN	18412	.	NM_001267550	exon48	c.A11370G	p.Q3790Q	AGATAATTGAAGT	.	PASS	Atlas-SNP
SLC25A6	293	hgsc.bcm.edu	37	X	1508324	1508324	+	Silent	SNP	G	G	A	rs7205	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	88	199	0	0.470588	0	G|0.691;A|0.309	0.309	strong	.	SLC25A6	27	.	NM_001636	exon2	c.C408T	p.F136F	TCTGGCGAAATCC	.	PASS	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	37	16	334543	334543	+	Missense_Mutation	SNP	C	C	G	rs45614840	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	47	75	0	0.546512	0	C|0.922;G|0.078	0.078	strong	.	PDIA2	51	.	NM_006849	exon2	c.C356G	p.T119R	ACCCTACGCTCAA	.	PASS	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	37	22	45221423	45221423	+	Silent	SNP	A	A	T	rs3209476	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	78	157	1	0.453488	0.00636943	A|0.825;T|0.175	0.175	strong	PRR5-ARHGAP8,colon,carcinoma,+1,2	PRR5-ARHGAP8	53	2	NM_181334	exon10	c.A912T	p.P304P	GACACCACCGCCG	.	scavenged	Atlas-SNP
LTF	4057	hgsc.bcm.edu	37	3	46501213	46501213	+	Missense_Mutation	SNP	T	T	C	rs1126478	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	92	252	0	0.429907	0	T|0.446;C|0.554	0.554	strong	.	LTF	98	.	NM_002343	exon2	c.A140G	p.K47R	CGCACTTTTCTCA	.	PASS	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	37	6	138645228	138645228	+	Silent	SNP	G	G	A	rs3734301	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	30	62	0	0.454545	0	G|0.789;A|0.211	0.211	strong	KIAA1244,NS,carcinoma,+1,1	KIAA1244	236	1	NM_020340	exon31	c.G4938A	p.A1646A	AGTGGCGGCCCCG	.	PASS	Atlas-SNP
LRPAP1	4043	hgsc.bcm.edu	37	4	3526645	3526645	+	Missense_Mutation	SNP	C	C	T	rs11549516	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	77	199	0	0.435028	0	C|0.964;T|0.036	0.036	strong	LRPAP1,NS,carcinoma,-1,1	LRPAP1	29	1	NM_002337	exon2	c.G338A	p.R113H	AGGTTGCGTATGA	.	PASS	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	37	17	45468842	45468842	+	Missense_Mutation	SNP	A	A	T	rs72825679	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	111	204	0	0.526066	0	A|0.931;T|0.069	0.069	strong	C17orf57,NS,carcinoma,0,1	.	.	1	NM_152347	exon15	c.A1622T	p.D541V	TTAAAGATAAAAA	.	PASS	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	37	8	95143138	95143138	+	Silent	SNP	A	A	G	rs2513797	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	31	46	0	0.469697	0	A|0.892;G|0.108	0.108	strong	.	CDH17	119	.	NM_004063	exon16	c.T2250C	p.G750G	TGGCCGACCCCCA	.	PASS	Atlas-SNP
PPYR1	5540	hgsc.bcm.edu	37	10	47087501	47087501	+	Missense_Mutation	SNP	C	C	T	rs3824733	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	69	107	0	0.610619	0	C|0.702;T|0.298	0.298	strong	PPYR1,rectum,carcinoma,-1,1	PPYR1	54	1	NM_005972	exon3	c.C718T	p.R240C	TACCGGCGCCTGC	.	PASS	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	37	12	50848132	50848132	+	Missense_Mutation	SNP	T	T	A	rs17124706	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	32	55	0	0.5	0	T|0.969;A|0.031	0.031	strong	.	LARP4	58	.	NM_001170808	exon10	c.T1053A	p.F351L	TGGCTTTAATTCG	.	PASS	Atlas-SNP
ZNF492	57615	hgsc.bcm.edu	37	19	22848028	22848028	+	Missense_Mutation	SNP	G	G	C	rs78240139		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	673	195	734	1	0.289747	0.0013624	G|0.500;C|0.500	0.500	weak	ZNF492_ENST00000456783,NS,carcinoma,0,1	ZNF492	129	1	NM_020855	exon4	c.G1557C	p.K519N	TGCAAAGATTTCC	.	scavenged	Atlas-SNP
ICAM3	3385	hgsc.bcm.edu	37	19	10449358	10449358	+	Missense_Mutation	SNP	T	T	C	rs7258015	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	58	141	0	0.491525	0	T|0.809;C|0.191	0.191	strong	ICAM3,colon,carcinoma,0,1	ICAM3	29	1	NM_002162	exon2	c.A343G	p.R115G	ACTCACTGTACAC	.	PASS	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	37	16	18839362	18839362	+	Silent	SNP	T	T	C	rs12445870	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	50	96	0	0.406504	0	T|0.764;C|0.236	0.236	strong	.	SMG1	401	.	NM_015092	exon55	c.A9732G	p.A3244A	AACTGTTGCAATA	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9047267	9047267	+	Missense_Mutation	SNP	C	C	T	rs10410169	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	54	107	0	0.509434	0	C|0.788;T|0.212	0.212	strong	.	MUC16	4315	.	NM_024690	exon5	c.G34364A	p.G11455D	GATGCACCAGGGG	.	PASS	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	37	3	52507782	52507782	+	Silent	SNP	G	G	A	rs56114678	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	28	52	0	0.682927	0	G|0.967;A|0.033	0.033	strong	.	NISCH	97	.	NM_001276293	exon7	c.G702A	p.G234G	CAGAGGGCTGGTC	.	PASS	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129946	175129946	+	Silent	SNP	C	C	T	rs2072035	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	99	106	0	0.99	0	C|0.428;T|0.572	0.572	strong	.	KIAA0040	2	.	NM_001162895	exon3	c.G204A	p.K68K	CTTCTTCTTCTTC	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214818548	214818548	+	Missense_Mutation	SNP	C	C	T	rs61732022	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	61	89	0	0.54955	0	C|0.986;T|0.014	0.014	strong	.	CENPF	321	.	NM_016343	exon13	c.C5635T	p.R1879C	TCATCACGTGAAG	.	PASS	Atlas-SNP
YBX1	4904	hgsc.bcm.edu	37	1	43166630	43166630	+	Missense_Mutation	SNP	G	G	A	rs200741644		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	7	195	0	0.0333333	0	G|0.998;A|0.002	0.002	weak	YBX1,mouth,carcinoma,0,1	YBX1	49	1	NM_004559	exon7	c.G919A	p.D307N	GCAGCCGATCCAC	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152284823	152284823	+	Missense_Mutation	SNP	A	A	G	rs74129459	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	280	6	315	1	0.0214286	0.0031746	A|0.984;T|0.016	.	alt	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.T2539C	p.S847P	TGCTTGACCCCGG	.	scavenged	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64637147	64637147	+	Silent	SNP	C	C	A	rs7161192	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	160	156	1	0.993789	0.00641026	C|0.628;A|0.372	0.372	strong	.	SYNE2	577	.	NM_182914	exon94	c.C17202A	p.L5734L	CAGCCTCTACCAA	.	PASS	Atlas-SNP
GDPGP1	390637	hgsc.bcm.edu	37	15	90784632	90784632	+	Missense_Mutation	SNP	G	G	T	rs144466387	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	24	52	0	0.470588	0	G|0.999;T|0.001	0.001	strong	.	.	.	.	NM_001013657	exon4	c.G492T	p.W164C	GGAGTGGGGCCAC	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917178	2917178	+	Missense_Mutation	SNP	G	G	A	rs61742111	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	46	108	0	0.429907	0	G|0.973;A|0.027	0.027	strong	.	ZNF57	57	.	NM_173480	exon4	c.G559A	p.G187R	AGTCACGGAAGAA	.	PASS	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167645888	167645888	+	Silent	SNP	T	T	C	rs1363560	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	94	175	0	0.494737	0	T|0.589;C|0.411	0.411	strong	.	.	.	.	NM_001122679	exon23	c.T4965C	p.N1655N	CACCAATGGAGGC	.	PASS	Atlas-SNP
SDCBP2	27111	hgsc.bcm.edu	37	20	1293141	1293141	+	Missense_Mutation	SNP	C	C	T	rs35367003	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	39	65	1	0.46988	0.0153846	C|0.985;T|0.015	0.015	strong	SDCBP2_ENST00000381812,colon,carcinoma,-1,13	SDCBP2	78	13	NM_080489	exon7	c.G572A	p.R191Q	ACAGTCCGCTGGA	.	scavenged	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	37	2	182399097	182399097	+	Silent	SNP	T	T	C	rs7562325	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	145	178	1	1	0.00561798	T|0.385;C|0.615	0.615	strong	.	ITGA4	142	.	NM_000885	exon26	c.T2883C	p.H961H	TGCGCATGTAAGA	.	PASS	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	37	19	33602757	33602757	+	Silent	SNP	C	C	T	rs10420258	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	72	110	0	0.549618	0	C|0.829;T|0.171	0.171	strong	.	GPATCH1	79	.	NM_018025	exon12	c.C1713T	p.H571H	CACTCACGCCAAG	.	PASS	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	37	9	20885216	20885216	+	Missense_Mutation	SNP	C	C	T	rs187654100	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	128	263	0	0.492308	0	C|1.000;T|0.000	0.000	strong	.	.	.	.	NM_017794	exon23	c.C2612T	p.A871V	CACTTGCTCTTGT	.	PASS	Atlas-SNP
MDH1B	130752	hgsc.bcm.edu	37	2	207615724	207615724	+	Missense_Mutation	SNP	C	C	T	rs61744963	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	39	100	0	0.354545	0	C|0.964;T|0.036	0.036	strong	.	MDH1B	89	.	NM_001039845	exon6	c.G986A	p.R329K	TCATATCTGTACA	.	PASS	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	37	17	21318773	21318773	+	Missense_Mutation	SNP	G	G	A	rs3752034	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	33	136	0	0.196429	0	G|0.744;A|0.256	0.256	strong	KCNJ12,NS,carcinoma,+1,1	.	.	1	NM_001194958	exon3	c.G119A	p.R40H	CGCGGCGCAGGTG	.	PASS	Atlas-SNP
CELA2A	63036	hgsc.bcm.edu	37	1	15789297	15789297	+	Silent	SNP	A	A	C	rs55772743		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	96	179	0	0.489796	0	.	.	weak	CELA2A,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CELA2A	32	1	NM_033440	exon4	c.A297C	p.A99A	GCTGGCAGTCAGT	.	PASS	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	37	15	92647684	92647684	+	Missense_Mutation	SNP	A	A	C	rs72655652	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	96	157	0	0.502618	0	A|0.990;C|0.010	0.010	strong	.	SLCO3A1	84	.	NM_013272	exon4	c.A921C	p.R307S	CGAAAGAGAATAC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9056930	9056930	+	Silent	SNP	T	T	G	rs918535	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	69	94	0	0.556452	0	T|0.739;G|0.261	0.261	strong	.	MUC16	4315	.	NM_024690	exon3	c.A30516C	p.T10172T	CATGTTTGTCTTC	.	PASS	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	37	10	113917085	113917085	+	Silent	SNP	T	T	A	rs2254537	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	95	126	0	0.524862	0	T|0.286;A|0.714	0.714	strong	.	GPAM	68	.	NM_001244949	exon19	c.A2043T	p.P681P	AGGTTCTGGAAGC	.	PASS	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	37	17	28381069	28381069	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	112	180	0	0.504505	0	.	.	none	.	EFCAB5	122	.	NM_198529	exon10	c.A2097G	p.E699E	ACAGGAAAAGAGG	.	PASS	Atlas-SNP
SPZ1	84654	hgsc.bcm.edu	37	5	79616400	79616400	+	Missense_Mutation	SNP	G	G	A	rs200562315	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	265	12	275	0	0.045283	0	G|0.998;A|0.002	0.002	strong	SPZ1,trunk,malignant_melanoma,0,1	SPZ1	60	1	NM_032567	exon1	c.G366A	p.M122I	TGAAATGTTATCA	.	scavenged	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79324439	79324439	+	Silent	SNP	A	A	G	rs12238013	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	85	179	1	0.429293	0.00558659	A|0.747;G|0.253	0.253	strong	PRUNE2_ENST00000376718,NS,carcinoma,0,1	PRUNE2	331	1	NM_015225	exon8	c.T2751C	p.D917D	CCAGGAATCTACC	.	scavenged	Atlas-SNP
NEU2	4759	hgsc.bcm.edu	37	2	233899377	233899377	+	Silent	SNP	C	C	T	rs2233394	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	96	247	0	0.502618	0	C|0.833;T|0.167	0.167	strong	.	NEU2	42	.	NM_005383	exon2	c.C753T	p.D251D	CAATGACGGGCTT	.	PASS	Atlas-SNP
OR52N4	390072	hgsc.bcm.edu	37	11	5776788	5776788	+	Missense_Mutation	SNP	C	C	T	rs368392235	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	254	3	259	0	0.011811	0	.	.	alt	OR52N4,right_upper_lobe,carcinoma,0,1	OR52N4	55	1	NM_001005175	exon1	c.C818T	p.P273L	TCCCCCCTTCTTG	.	scavenged	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	37	8	10388826	10388826	+	Silent	SNP	G	G	A	rs4841367	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	46	69	0	0.489362	0	G|0.929;A|0.071	0.071	strong	.	PRSS55	67	.	NM_001197020	exon3	c.G369A	p.V123V	TGTCGTGCTGGGG	.	PASS	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	37	21	46313442	46313442	+	Silent	SNP	G	G	T	rs2230529	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	272	132	245	0	0.485294	0	G|0.775;T|0.225	0.225	strong	.	ITGB2	107	.	NM_000211	exon10	c.C1101A	p.V367V	CAGGAAGACCCTG	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79343111	79343111	+	Silent	SNP	G	G	A	rs78575519	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	26	50	0	0.4	0	G|0.863;A|0.137	0.137	strong	.	FRAS1	779	.	NM_001166133	exon34	c.G4635A	p.P1545P	TCCCCCGGCAGCA	.	PASS	Atlas-SNP
GEM	2669	hgsc.bcm.edu	37	8	95272605	95272605	+	Missense_Mutation	SNP	G	G	C	rs2170363	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	72	145	0	0.507042	0	A|0.009;C|0.090;G|0.902;N|0.000	0.090	strong	GEM,colon,carcinoma,+1,1	GEM	40	1	NM_181702	exon2	c.C127G	p.R43G	GGTTGCGGTGGCT	.	PASS	Atlas-SNP
AP4E1	23431	hgsc.bcm.edu	37	15	51217361	51217361	+	Missense_Mutation	SNP	T	T	C	rs2306331	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	53	108	0	0.552083	0	T|0.550;C|0.450	0.450	strong	.	AP4E1	78	.	NM_007347	exon5	c.T487C	p.C163R	TTCCCCTGCGAAA	.	PASS	Atlas-SNP
ADCK5	203054	hgsc.bcm.edu	37	8	145603114	145603114	+	Missense_Mutation	SNP	A	A	C	rs6599528	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	219	107	211	0	0.488584	0	A|0.433;C|0.567	0.567	strong	ADCK5,rectum,carcinoma,0,3	ADCK5	36	3	NM_174922	exon2	c.A51C	p.R17S	GCACAGAAGGCAG	.	PASS	Atlas-SNP
PSAPL1	768239	hgsc.bcm.edu	37	4	7436239	7436239	+	Missense_Mutation	SNP	C	C	T	rs56402179	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	49	55	0	0.98	0	C|0.882;T|0.118	0.118	strong	.	PSAPL1	51	.	NM_001085382	exon1	c.G368A	p.R123H	GCCCCACGGAGCA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179582327	179582327	+	Missense_Mutation	SNP	C	C	T	rs13390491	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	135	256	1	0.513308	0.00390625	C|0.774;T|0.226	0.226	strong	.	TTN	18412	.	NM_001267550	exon87	c.G25274A	p.S8425N	ATGTGGCTCTGGT	.	PASS	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	37	21	37692589	37692589	+	Silent	SNP	A	A	T	rs2236433	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	35	63	0	0.507246	0	A|0.762;T|0.238	0.238	strong	.	MORC3	78	.	NM_015358	exon1	c.A27T	p.I9I	CGGGATACGCCTC	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39577215	39577215	+	Missense_Mutation	SNP	G	G	A	rs8071814	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	33	59	0	0.485294	0	G|0.935;A|0.065	0.065	strong	.	KRT37	61	.	NM_003770	exon7	c.C1265T	p.T422M	GCAGGCGTGGAAC	.	PASS	Atlas-SNP
OR2A5	393046	hgsc.bcm.edu	37	7	143747870	143747870	+	Missense_Mutation	SNP	A	A	G	rs2961144	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	78	178	0	0.448276	0	A|0.713;G|0.287	0.287	strong	.	OR2A5	78	.	NM_012365	exon1	c.A376G	p.I126V	ATGGCTATCTGCC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179398823	179398823	+	Silent	SNP	G	G	A	rs2857265	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	71	139	0	0.496504	0	G|0.802;A|0.198	0.198	strong	.	TTN	18412	.	NM_001267550	exon358	c.C102519T	p.G34173G	TCGGACGCCAAAG	.	PASS	Atlas-SNP
RIT2	6014	hgsc.bcm.edu	37	18	40323497	40323497	+	Silent	SNP	G	G	T	rs1804730	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	40	88	0	0.5	0	G|0.455;T|0.545	0.545	strong	.	RIT2	56	.	NM_002930	exon5	c.C615A	p.L205L	ACCTTTGAGCTTC	.	PASS	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	37	2	225244923	225244923	+	Silent	SNP	A	A	G	rs3738953	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	52	49	0	1	0	A|0.775;G|0.225	0.225	strong	.	FAM124B	71	.	NM_001122779	exon2	c.T735C	p.V245V	CAGCTGAACCTAC	.	PASS	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	37	1	3319541	3319541	+	Missense_Mutation	SNP	G	G	A	rs141374404	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	266	115	225	0	0.432331	0	G|1.000;A|0.000	0.000	strong	.	PRDM16	147	.	NM_022114	exon6	c.G863A	p.R288Q	GCGAGCGGATGTT	.	PASS	Atlas-SNP
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32497904	32497904	+	Missense_Mutation	SNP	C	C	T	rs34716432	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	340	112	224	0	0.329412	0	C|0.873;T|0.127	0.127	strong	.	HLA-DRB5	31	.	NM_002125	exon1	c.G98A	p.R33Q	TTACGTCGGGTGT	.	PASS	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	37	19	44892266	44892266	+	Splice_Site	SNP	T	T	C	rs200167944		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	3	115	2	0.0218978	0.0173913	.	.	weak	ZNF285,colon,carcinoma,0,1	ZNF285	86	1	NM_152354	exon5	c.143-2A>G	.	GTCTCCTAGGAGA	.	scavenged	Atlas-SNP
LRRC38	126755	hgsc.bcm.edu	37	1	13802437	13802437	+	Silent	SNP	G	G	A	rs3013106	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	140	167	0	0.992908	0	A|0.323;C|0.008	0.323	strong	.	LRRC38	12	.	NM_001010847	exon2	c.C762T	p.S254S	CACACCGGAGAAA	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121228679	121228679	+	Missense_Mutation	SNP	A	A	C	rs4870723	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	80	101	0	0.987654	0	A|0.456;C|0.544	0.544	strong	COL14A1,rectum,carcinoma,0,1	COL14A1	292	1	NM_021110	exon14	c.A1687C	p.N563H	CAGATCAATGGTT	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104102563	104102563	+	Silent	SNP	T	T	C	rs17217250	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	362	191	364	0	0.527624	0	T|0.840;C|0.160	0.160	strong	CENPE,NS,carcinoma,0,1	CENPE	253	1	NM_001813	exon12	c.A1014G	p.V338V	AGTTGATACCTCA	.	PASS	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	37	11	4945236	4945236	+	Missense_Mutation	SNP	T	T	C	rs35666095	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	33	52	0	0.478261	0	T|0.912;C|0.088	0.088	strong	.	OR51G1	74	.	NM_001005237	exon1	c.A334G	p.M112V	ACTCCATTGAAGA	.	PASS	Atlas-SNP
TRIM63	84676	hgsc.bcm.edu	37	1	26385003	26385003	+	Missense_Mutation	SNP	T	T	C	rs2275950	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	81	195	0	0.457627	0	T|0.785;C|0.215	0.215	strong	TRIM63,NS,carcinoma,0,1	TRIM63	33	1	NM_032588	exon5	c.A709G	p.K237E	GCTTTTTCTCCTG	.	PASS	Atlas-SNP
FSTL4	23105	hgsc.bcm.edu	37	5	132535046	132535046	+	Missense_Mutation	SNP	G	G	A	rs3749817	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	55	95	0	0.533981	0	G|0.785;N|0.000	.	strong	.	FSTL4	74	.	NM_015082	exon16	c.C2270T	p.T757M	GGCTCCGTGTGCA	.	PASS	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	37	9	90321583	90321583	+	Silent	SNP	C	C	T	rs3118863	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	31	66	0	0.508197	0	C|0.642;T|0.358	0.358	strong	.	DAPK1	329	.	NM_004938	exon26	c.C3597T	p.R1199R	GGTCCGCGGCCTG	.	PASS	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109687403	109687403	+	Missense_Mutation	SNP	A	A	G	rs17723637	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	35	87	0	0.384615	0	A|0.881;G|0.119	0.119	strong	ZNF462,NS,carcinoma,0,1	ZNF462	322	1	NM_021224	exon3	c.A1210G	p.M404V	AGTGCTATGGATC	.	PASS	Atlas-SNP
DEPTOR	64798	hgsc.bcm.edu	37	8	121061879	121061879	+	Missense_Mutation	SNP	G	G	A	rs4871827	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	104	235	0	0.495238	0	G|0.693;A|0.307	0.307	strong	.	DEPTOR	41	.	NM_022783	exon9	c.G1166A	p.S389N	CCGTGAGCAATCT	.	PASS	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16794916	16794916	+	Silent	SNP	G	G	A	rs396514	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	54	62	0	1	0	G|0.708;A|0.292	0.292	strong	.	MYO10	198	.	NM_012334	exon4	c.C306T	p.S102S	GTTCACGGAGGCC	.	PASS	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	37	8	105360994	105360994	+	Missense_Mutation	SNP	C	C	A	rs61682032	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	81	157	0	0.47093	0	C|0.973;A|0.027	0.027	strong	.	.	.	.	NM_001257317	exon2	c.C214A	p.L72M	GTTCTGCTGTGTT	.	PASS	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	37	17	73914040	73914040	+	Silent	SNP	C	C	T	rs376546796		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	33	56	0	0.622642	0	.	.	weak	.	FBF1	48	.	NM_001080542	exon21	c.G2313A	p.G771G	CCGGATCCCCAGC	.	PASS	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	37	1	205819104	205819104	+	Missense_Mutation	SNP	G	G	A	rs11540014	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	84	183	0	0.456522	0	G|0.889;A|0.111	0.111	strong	.	PM20D1	56	.	NM_152491	exon1	c.C97T	p.H33Y	TTTGATGCTCCCC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036950	33036950	+	Silent	SNP	C	C	T	rs2308931	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	54	88	0	0.509434	0	C|0.869;T|0.131	0.131	strong	.	HLA-DPA1	20	.	NM_033554	exon3	c.G474A	p.L158L	AGTGACCAGCTCC	.	PASS	Atlas-SNP
C4orf40	401137	hgsc.bcm.edu	37	4	71024467	71024467	+	Silent	SNP	T	T	G	rs201990073		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	26	142	0	0.22807	0	T|0.999;G|0.001	0.001	weak	.	C4orf40	19	.	NM_214711	exon3	c.T498G	p.A166A	TGGAGCTGAGCCT	.	PASS	Atlas-SNP
ASIC2	40	hgsc.bcm.edu	37	17	32483270	32483270	+	Silent	SNP	C	C	G	rs2228989	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	45	75	0	0.420561	0	C|0.782;G|0.218	0.218	strong	.	.	.	.	NM_001094	exon1	c.G282C	p.L94L	GCCATTCAGGTTA	.	PASS	Atlas-SNP
KIAA0195	9772	hgsc.bcm.edu	37	17	73492494	73492494	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	100	170	0	0.502513	0	.	.	none	.	KIAA0195	102	.	NM_014738	exon24	c.C3185G	p.P1062R	GCCTGCCCTGTTC	.	PASS	Atlas-SNP
DHRS4	10901	hgsc.bcm.edu	37	14	24423007	24423007	+	Missense_Mutation	SNP	G	G	A	rs17099455	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	28	65	0	0.4375	0	G|0.795;A|0.205	0.205	strong	.	DHRS4	22	.	NM_021004	exon1	c.G10A	p.A4T	CACAAGGCGGGGC	.	PASS	Atlas-SNP
CLEC12B	387837	hgsc.bcm.edu	37	12	10163375	10163375	+	Missense_Mutation	SNP	C	C	A	rs1359082	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	23	73	0	0.328571	0	C|0.642;A|0.358	0.358	strong	.	CLEC12B	25	.	NM_001129998	exon1	c.C17A	p.T6N	AAGTGACCTACGC	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2408495	2408495	+	Silent	SNP	T	T	G	rs62120713	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	50	90	0	0.520833	0	T|0.901;G|0.099	0.099	strong	.	TMPRSS9	79	.	NM_182973	exon7	c.T882G	p.A294A	CGTGGCTGTGCTG	.	PASS	Atlas-SNP
SYT8	90019	hgsc.bcm.edu	37	11	1857207	1857207	+	Missense_Mutation	SNP	G	G	A	rs139074200	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	32	91	0	0.438356	0	G|1.000;A|0.000	0.000	strong	.	SYT8	29	.	NM_138567	exon4	c.G392A	p.S131N	TTGGAAGCCAGGA	.	PASS	Atlas-SNP
PLEKHA7	144100	hgsc.bcm.edu	37	11	16837788	16837788	+	Silent	SNP	G	G	A	rs217750	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	49	75	0	0.556818	0	G|0.854;A|0.146	0.146	strong	.	PLEKHA7	120	.	NM_175058	exon12	c.C1890T	p.R630R	CATGGAGCGTCGG	.	PASS	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	37	3	184106493	184106493	+	Silent	SNP	T	T	G	rs2293606	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	65	116	0	0.485075	0	T|0.904;G|0.096	0.096	strong	CHRD,NS,carcinoma,0,1	CHRD	149	1	NM_003741	exon21	c.T2673G	p.P891P	GCCCCCTTTTGGA	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037580	33037580	+	Missense_Mutation	SNP	T	T	G	rs2308911	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	47	167	0	0.348148	0	T|0.716;G|0.284	0.284	strong	.	HLA-DPA1	20	.	NM_033554	exon2	c.A184C	p.M62L	AGAACATCTCATC	.	PASS	Atlas-SNP
OR6Q1	219952	hgsc.bcm.edu	37	11	57798723	57798723	+	Missense_Mutation	SNP	A	A	G	rs921135	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	402	162	370	0	0.402985	0	A|0.655;G|0.345	0.345	strong	.	OR6Q1	58	.	NM_001005186	exon1	c.A299G	p.D100G	ATGCTGATTGCCT	.	PASS	Atlas-SNP
NPHP4	261734	hgsc.bcm.edu	37	1	5965381	5965381	+	Silent	SNP	C	C	T	rs12120967	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	69	175	0	0.403509	0	C|0.908;T|0.092	0.092	strong	.	NPHP4	119	.	NM_015102	exon15	c.G1926A	p.E642E	CACCATCTCGTTG	.	PASS	Atlas-SNP
TEKT1	83659	hgsc.bcm.edu	37	17	6733672	6733672	+	Silent	SNP	T	T	C	rs8078571	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	275	270	266	2	0.981818	0.0075188	T|0.415;C|0.585	0.585	strong	TEKT1,NS,carcinoma,0,1	TEKT1	49	1	NM_053285	exon2	c.A24G	p.P8P	CTTGGGTGGAGGT	.	PASS	Atlas-SNP
IQCH	64799	hgsc.bcm.edu	37	15	67692566	67692566	+	Missense_Mutation	SNP	T	T	C	rs35933176	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	107	197	0	0.477679	0	T|0.997;C|0.003	0.003	strong	.	IQCH	81	.	NM_001031715	exon14	c.T2020C	p.Y674H	CCTTCCTACCTAA	.	PASS	Atlas-SNP
CCND2	894	hgsc.bcm.edu	37	12	4388084	4388084	+	Silent	SNP	C	C	G	rs3217805	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	21	72	0	0.388889	0	C|0.717;G|0.283	0.283	strong	.	CCND2	50	.	NM_001759	exon3	c.C570G	p.T190T	TGCCACCGGTAAG	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579801	55579801	+	Missense_Mutation	SNP	T	T	C	rs12790505	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	58	127	0	0.537037	0	T|0.888;C|0.112	0.112	strong	OR5L1,NS,carcinoma,0,1	OR5L1	145	1	NM_001004738	exon1	c.T859C	p.S287P	CTGAACTCTGTGA	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	37	7	20687181	20687181	+	Silent	SNP	C	C	T	rs2893006	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	183	178	0	1	0	C|0.796;T|0.204	0.204	strong	.	ABCB5	357	.	NM_001163941	exon10	c.C1005T	p.S335S	CCATAGCAGTTAT	.	PASS	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	37	2	191364828	191364828	+	Missense_Mutation	SNP	C	C	T	rs149142084	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	68	117	0	0.485714	0	C|0.994;T|0.006	0.006	strong	.	MFSD6	58	.	NM_017694	exon8	c.C2260T	p.P754S	AACCAGCCATCCC	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32137512	32137512	+	Missense_Mutation	SNP	C	C	G	rs3759299	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	64	108	0	0.615385	0	C|0.797;G|0.203	0.203	strong	.	.	.	.	NM_018169	exon4	c.C3623G	p.S1208C	AGTGTTCTCCTTT	.	PASS	Atlas-SNP
FCGR3A	2214	hgsc.bcm.edu	37	1	161518336	161518336	+	Missense_Mutation	SNP	C	C	T	rs77144485	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	682	164	614	0	0.240469	0	C|0.950;T|0.050	0.050	strong	.	FCGR3A	38	.	NM_000569	exon3	c.G302A	p.S101N	ATGAGGCTCTCAT	.	PASS	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	37	1	222802803	222802803	+	Silent	SNP	T	T	G	rs3748626	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	97	86	0	1	0	T|0.387;G|0.613	0.613	strong	MIA3,NS,carcinoma,0,1	MIA3	167	1	NM_198551	exon4	c.T2241G	p.P747P	AAACCCTGGGAAT	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201357	24201357	+	Silent	SNP	A	A	G	rs4649124	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	39	96	0	0.382353	0	A|0.358;G|0.642	0.642	strong	.	CNR2	78	.	NM_001841	exon2	c.T751C	p.L251L	CAGCCAACACTAG	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371469	240371469	+	Silent	SNP	C	C	T	rs199920451		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	11	92	2	0.114583	0.0217391	C|0.999;T|0.001	0.001	weak	FMN2,NS,carcinoma,0,1	FMN2	451	1	NM_020066	exon5	c.C3357T	p.P1119P	CATACCCCCTCCT	.	scavenged	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79089007	79089007	+	Silent	SNP	T	T	C	rs3743057	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	134	150	0	0.992593	0	T|0.234;C|0.766	0.766	strong	.	ADAMTS7	142	.	NM_014272	exon4	c.A744G	p.V248V	AGCTACTACCAGG	.	PASS	Atlas-SNP
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124634	26124634	+	Silent	SNP	C	C	T	rs4645	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	75	176	1	0.454545	0.00568182	C|0.857;T|0.143	0.143	strong	HIST1H2AC,NS,carcinoma,+1,1	HIST1H2AC	29	1	NM_003512	exon1	c.C174T	p.Y58Y	AGAGTACCTGACC	.	scavenged	Atlas-SNP
KRT76	51350	hgsc.bcm.edu	37	12	53164848	53164848	+	Silent	SNP	G	G	A	rs7313832	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	117	106	0	0.991525	0	G|0.510;A|0.490	0.490	strong	KRT76,NS,adenoma,0,1	KRT76	72	1	NM_015848	exon7	c.C1419T	p.N473N	CTTGACGTTCATC	.	PASS	Atlas-SNP
KDELC1	79070	hgsc.bcm.edu	37	13	103449202	103449202	+	Missense_Mutation	SNP	T	T	C	rs1047740	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	52	107	0	0.490566	0	T|0.602;C|0.398	0.398	strong	.	KDELC1	66	.	NM_024089	exon2	c.A340G	p.I114V	ATTTAATTTCCAC	.	PASS	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65427040	65427040	+	Silent	SNP	T	T	C	rs806607	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	79	82	0	1	0	0|0.020;C|0.435	0.435	strong	.	HEPH	224	.	NM_138737	exon14	c.T2457C	p.Y819Y	TAGTTATGGTTAC	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123844503	123844503	+	Missense_Mutation	SNP	C	C	T	rs10887063	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	35	47	0	0.466667	0	C|0.791;T|0.209	0.209	strong	.	TACC2	271	.	NM_206862	exon4	c.C2488T	p.L830F	AAGCATCTCCAGC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513812	195513812	+	Missense_Mutation	SNP	T	T	A	rs201142885	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	7	109	1	0.0614035	0.00917431	T|0.976;A|0.023	0.023	strong	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.A4639T	p.T1547S	CACCTGTGGATGC	.	scavenged	Atlas-SNP
SLC6A12	6539	hgsc.bcm.edu	37	12	311949	311949	+	Silent	SNP	A	A	G	rs216250	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	73	92	0	1	0	A|0.437;G|0.563	0.563	strong	.	SLC6A12	60	.	NM_001122848	exon5	c.T447C	p.T149T	CTCAGAAGTGAAG	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214814125	214814125	+	Missense_Mutation	SNP	G	G	A	rs3795522	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	41	108	0	0.5	0	G|0.917;A|0.083	0.083	strong	.	CENPF	321	.	NM_016343	exon12	c.G2444A	p.R815H	AATGTCGTTTAGA	.	PASS	Atlas-SNP
OR51T1	401665	hgsc.bcm.edu	37	11	4903219	4903219	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	63	178	0	0.453237	0	.	.	none	.	OR51T1	92	.	NM_001004759	exon1	c.C171T	p.S57S	GATCTCCATTCCA	.	PASS	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	37	5	79741086	79741086	+	Silent	SNP	A	A	G	rs150392926	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	53	75	0	0.546392	0	A|0.999;G|0.001	0.001	strong	.	ZFYVE16	100	.	NM_001105251	exon7	c.A2586G	p.L862L	AGGACTATGTTCC	.	PASS	Atlas-SNP
OR4A5	81318	hgsc.bcm.edu	37	11	51412327	51412327	+	Missense_Mutation	SNP	T	T	A	rs56302591	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	57	83	0	0.5	0	T|0.908;A|0.092	0.092	strong	.	OR4A5	116	.	NM_001005272	exon1	c.A69T	p.K23N	TAATGCTTTTTGC	.	PASS	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	37	13	37678884	37678884	+	Missense_Mutation	SNP	C	C	G	rs17773251	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	452	189	418	0	0.418142	0	C|0.919;G|0.081	0.081	strong	.	CSNK1A1L	69	.	NM_145203	exon1	c.G510C	p.R170S	GTGTTGCCTGGTC	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123846485	123846485	+	Silent	SNP	A	A	G	rs4751871	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	74	0	0.526316	0	A|0.762;G|0.238	0.238	strong	.	TACC2	271	.	NM_206862	exon4	c.A4470G	p.Q1490Q	TCTGCAAGATCCA	.	PASS	Atlas-SNP
PTPLAD1	51495	hgsc.bcm.edu	37	15	65856653	65856653	+	Silent	SNP	G	G	A	rs11539008	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	134	134	0	1	0	G|0.872;A|0.128	0.128	strong	.	PTPLAD1	23	.	NM_016395	exon7	c.G633A	p.T211T	CACTACGTCACCG	.	PASS	Atlas-SNP
SCAI	286205	hgsc.bcm.edu	37	9	127818276	127818276	+	Missense_Mutation	SNP	C	C	T	rs589292	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	96	0	0.473118	0	C|0.748;T|0.252	0.252	strong	.	SCAI	84	.	NM_173690	exon4	c.G178A	p.A60T	TAAGAGCAAATTC	.	PASS	Atlas-SNP
ZNF792	126375	hgsc.bcm.edu	37	19	35449409	35449409	+	Silent	SNP	G	G	A	rs2651081	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	40	75	0	0.449438	0	G|0.659;A|0.341	0.341	strong	FLJ38451,NS,carcinoma,0,1	ZNF792	46	1	NM_175872	exon4	c.C1350T	p.H450H	ACACCCGTGAGGC	.	PASS	Atlas-SNP
ACSM1	116285	hgsc.bcm.edu	37	16	20648702	20648702	+	Silent	SNP	G	G	A	rs151328	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	43	80	0	0.462366	0	G|0.685;A|0.315	0.315	strong	.	ACSM1	118	.	NM_052956	exon8	c.C1188T	p.Y396Y	GACGTCGTAGGGT	.	PASS	Atlas-SNP
WDHD1	11169	hgsc.bcm.edu	37	14	55448409	55448409	+	Missense_Mutation	SNP	G	G	C	rs61741224	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	53	72	0	0.546392	0	G|0.928;C|0.072	0.072	strong	.	WDHD1	82	.	NM_007086	exon16	c.C1912G	p.P638A	AACAAGGGGTACC	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57594908	57594908	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	2	204	0	0.010582	0	.	.	none	LRP1,NS,carcinoma,+2,2	LRP1	428	2	NM_002332	exon65	c.C10317T	p.C3439C	CAACTGCGGAGAT	.	scavenged	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1263523	1263523	+	Missense_Mutation	SNP	G	G	A	rs1541314	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	67	151	0	0.435065	0	G|0.928;A|0.072	0.072	strong	.	MUC5B	473	.	NM_002458	exon31	c.G5413A	p.G1805S	GTTGCAGGCGGGG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9056941	9056941	+	Missense_Mutation	SNP	A	A	G	rs10410136	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	61	95	0	0.580952	0	A|0.797;G|0.203	0.203	strong	.	MUC16	4315	.	NM_024690	exon3	c.T30505C	p.F10169L	TCCTAAATCCAGA	.	PASS	Atlas-SNP
ALG1	56052	hgsc.bcm.edu	37	16	5129756	5129756	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	334	18	251	2	0.0538922	0.00796813	.	.	none	ALG1,NS,carcinoma,0,3	ALG1	35	3	NM_019109	exon9	c.A909G	p.E303E	GTTTGAACAACTG	.	scavenged	Atlas-SNP
SP2	6668	hgsc.bcm.edu	37	17	45994044	45994044	+	Silent	SNP	C	C	T	rs2228253	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	36	86	0	0.473684	0	C|0.479;T|0.521	0.521	strong	.	SP2	38	.	NM_003110	exon3	c.C607T	p.L203L	GTGAAGCTGACAG	.	PASS	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	37	6	155485554	155485554	+	Silent	SNP	G	G	A	rs1032141	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	18	58	0	0.382979	0	G|0.435;A|0.565	0.565	strong	.	TIAM2	161	.	NM_012454	exon7	c.G2034A	p.Q678Q	GATCCAGCAATGG	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152079989	152079989	+	Missense_Mutation	SNP	T	T	G	rs1131471	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	103	181	0	0.463964	0	T|0.479;G|0.521	0.521	strong	.	TCHH	275	.	NM_007113	exon3	c.A5704C	p.K1902Q	GGGATTTTATCTC	.	PASS	Atlas-SNP
SNED1	25992	hgsc.bcm.edu	37	2	242002263	242002263	+	Silent	SNP	C	C	T	rs3732228	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	54	116	0	0.45	0	C|0.950;T|0.050	0.050	strong	.	SNED1	76	.	NM_001080437	exon17	c.C2313T	p.R771R	GGACCGCGTTGCT	.	PASS	Atlas-SNP
TIMP4	7079	hgsc.bcm.edu	37	3	12198336	12198336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	88	188	0	0.458333	0	.	.	none	.	TIMP4	21	.	NM_003256	exon3	c.G336C	p.K112N	ATACTGCTTCTGG	.	PASS	Atlas-SNP
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629905	32629905	+	Missense_Mutation	SNP	T	T	C	rs2647032	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	91	62	0	1	0	T|0.925;C|0.075	0.075	strong	.	HLA-DQB1	15	.	NM_002123	exon3	c.A500G	p.D167G	TCCTGATCATTCC	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46910210	46910210	+	Missense_Mutation	SNP	G	G	A	rs62000962	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	55	143	0	0.528846	0	G|0.896;A|0.104	0.104	strong	.	COL18A1	129	.	NM_030582	exon19	c.G2521A	p.V841I	GATGGAGTCCCCG	.	PASS	Atlas-SNP
DNAJB8	165721	hgsc.bcm.edu	37	3	128182074	128182074	+	Silent	SNP	G	G	A	rs2981026	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	87	170	0	0.5	0	G|0.724;A|0.276	0.276	strong	.	DNAJB8	34	.	NM_153330	exon3	c.C15T	p.Y5Y	CACTTCGTAGTAG	.	PASS	Atlas-SNP
POTEM	641455	hgsc.bcm.edu	37	14	20020143	20020143	+	Silent	SNP	C	C	T	rs200891854	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	492	209	459	1	0.424797	0.00217865	C|0.986;T|0.014	0.014	strong	POTEM_ENST00000551509,NS,carcinoma,0,2	POTEM	51	2	NM_001145442	exon1	c.G78A	p.K26K	GCACCACTTGCCC	.	scavenged	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	37	22	40417780	40417780	+	Silent	SNP	C	C	T	rs5995793	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	30	81	0	0.434783	0	C|0.719;T|0.281	0.281	strong	.	FAM83F	29	.	NM_138435	exon4	c.C1266T	p.N422N	CCGAAACGGCATG	.	PASS	Atlas-SNP
FAM160A1	729830	hgsc.bcm.edu	37	4	152498625	152498625	+	Silent	SNP	C	C	T	rs17275536	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	67	143	0	0.437909	0	C|0.718;T|0.282	0.282	strong	.	FAM160A1	60	.	NM_001109977	exon5	c.C129T	p.H43H	GAAGCACGACCCC	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141274576	141274576	+	Silent	SNP	T	T	C	rs4954672	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	98	89	0	1	0	T|0.290;C|0.710	0.710	strong	.	LRP1B	1315	.	NM_018557	exon50	c.A8031G	p.Q2677Q	TTTGTTTTGAACT	.	PASS	Atlas-SNP
PRX	57716	hgsc.bcm.edu	37	19	40901614	40901614	+	Missense_Mutation	SNP	A	A	G	rs268671	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	28	87	0	0.373333	0	A|0.446;G|0.554	0.554	strong	.	PRX	151	.	NM_181882	exon7	c.T2645C	p.V882A	CCCTCCACCCGCT	.	PASS	Atlas-SNP
ANKRD13A	88455	hgsc.bcm.edu	37	12	110456175	110456175	+	Silent	SNP	A	A	G	rs2302689	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	98	226	0	0.439462	0	A|0.706;G|0.294	0.294	strong	.	ANKRD13A	39	.	NM_033121	exon5	c.A426G	p.P142P	ATGCCCAAATGAT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105411781	105411781	+	Missense_Mutation	SNP	G	G	A	rs10438247	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	208	205	0	0.995215	0	G|0.479;A|0.521	0.521	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.C10007T	p.P3336L	GCCTTCGGCGCAG	.	PASS	Atlas-SNP
ZBTB49	166793	hgsc.bcm.edu	37	4	4304522	4304522	+	Missense_Mutation	SNP	A	A	C	rs2920217	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	73	108	0	0.536765	0	A|0.779;C|0.221	0.221	strong	.	ZBTB49	63	.	NM_145291	exon3	c.A959C	p.Y320S	AGAAATACGCAGA	.	PASS	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	37	6	43184132	43184132	+	Missense_Mutation	SNP	A	A	C	rs2273709	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	54	1	1	0.0185185	A|0.629;C|0.371	0.371	strong	CUL9,colon,carcinoma,0,1	CUL9	248	1	NM_015089	exon31	c.A6173C	p.H2058P	GCGTACACCAGGC	.	scavenged	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	37	8	143960597	143960597	+	Silent	SNP	G	G	A	rs5283	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	116	128	0	1	0	G|0.668;A|0.332	0.332	strong	.	CYP11B1	128	.	NM_000497	exon2	c.C246T	p.D82D	TCCCAAGTCGTAC	.	PASS	Atlas-SNP
TM4SF19	116211	hgsc.bcm.edu	37	3	196054439	196054439	+	Missense_Mutation	SNP	T	T	G	rs6785339	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	47	109	0	0.474747	0	T|0.414;G|0.586	0.586	strong	TM4SF19,NS,carcinoma,0,1	TM4SF19	21	1	NM_001204897	exon2	c.A23C	p.Q8P	CTTGCCTGCGTGC	.	PASS	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	37	1	180080290	180080290	+	Silent	SNP	T	T	A	rs12126496	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	66	114	0	0.468085	0	T|0.938;A|0.062	0.062	strong	.	CEP350	418	.	NM_014810	exon38	c.T9348A	p.L3116L	GCTACTTGTGTGA	.	PASS	Atlas-SNP
CCR4	1233	hgsc.bcm.edu	37	3	32995928	32995928	+	Silent	SNP	C	C	T	rs2228428	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	97	180	0	0.419913	0	C|0.799;T|0.201	0.201	strong	.	CCR4	36	.	NM_005508	exon2	c.C1014T	p.Y338Y	AATTTACTCTGCT	.	PASS	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	37	10	43318659	43318659	+	Nonsense_Mutation	SNP	C	C	T	rs200996070		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	7	188	1	0.0360825	0.00531915	.	.	weak	BMS1,caecum,carcinoma,0,2	BMS1	132	2	NM_014753	exon20	c.C3226T	p.R1076X	GCACTCCGAGCTC	.	scavenged	Atlas-SNP
KTI12	112970	hgsc.bcm.edu	37	1	52498370	52498370	+	Silent	SNP	C	C	T	rs2809917	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	52	84	0	0.481481	0	C|0.799;T|0.201	0.201	strong	KTI12,NS,carcinoma,0,1	KTI12	30	1	NM_138417	exon1	c.G1064A	p.X355X	TCTGGTCAGTGCA	.	PASS	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	37	1	19181015	19181015	+	Missense_Mutation	SNP	G	G	C	rs34447754	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	62	57	0	1	0	G|0.720;C|0.280	0.280	strong	.	TAS1R2	134	.	NM_152232	exon3	c.C949G	p.R317G	AGTGGCGCAGCTC	.	PASS	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	37	1	16056364	16056364	+	Silent	SNP	G	G	A	rs3817269	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	18	39	0	0.45	0	G|0.678;A|0.322	0.322	strong	.	PLEKHM2	94	.	NM_015164	exon14	c.G2148A	p.T716T	CCTGACGGATGCC	.	PASS	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	37	6	143090734	143090734	+	Silent	SNP	T	T	C	rs34530989	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	88	103	0	0.494382	0	T|0.858;C|0.142	0.142	strong	.	HIVEP2	225	.	NM_006734	exon5	c.A5142G	p.G1714G	GCCGGTTCCAGGC	.	PASS	Atlas-SNP
TGOLN2	10618	hgsc.bcm.edu	37	2	85554080	85554080	+	Missense_Mutation	SNP	G	G	A	rs4247303	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	59	136	0	0.472	0	G|0.432;A|0.567	0.567	strong	TGOLN2_ENST00000377386,colon,carcinoma,0,1	TGOLN2	32	1	NM_001206841	exon2	c.C775T	p.R259W	CTTTCCGGGAAGG	.	PASS	Atlas-SNP
PARP2	10038	hgsc.bcm.edu	37	14	20822331	20822331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	70	132	0	0.434783	0	.	.	none	PARP2_ENST00000250416,NS,carcinoma,0,2	PARP2	92	2	NM_005484	exon8	c.A727C	p.K243Q	TTAATAAAGTTGA	.	PASS	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	37	15	42166500	42166500	+	Missense_Mutation	SNP	C	C	T	rs12593397	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	63	121	0	0.496063	0	C|0.591;T|0.409	0.409	strong	.	SPTBN5	171	.	NM_016642	exon24	c.G4574A	p.R1525H	TGCTTGCGGTGAA	.	PASS	Atlas-SNP
FGB	2244	hgsc.bcm.edu	37	4	155491759	155491759	+	Missense_Mutation	SNP	G	G	A	rs4220	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	112	318	0	0.38488	0	G|0.843;A|0.157	0.157	strong	.	FGB	71	.	NM_005141	exon8	c.G1433A	p.R478K	CAATGAGGAAGAT	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78263514	78263514	+	Silent	SNP	G	G	A	rs17853713	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	58	96	0	0.479339	0	G|0.760;A|0.240	0.240	strong	RNF213_ENST00000411702,NS,carcinoma,0,2	RNF213	766	2	NM_001256071	exon6	c.G990A	p.K330K	CGGTAAGAATGAA	.	PASS	Atlas-SNP
PIEZO2	63895	hgsc.bcm.edu	37	18	10696227	10696227	+	Silent	SNP	C	C	T	rs2277860	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	65	96	0	0.555556	0	C|0.712;T|0.288	0.288	strong	.	.	.	.	NM_022068	exon43	c.G6696A	p.P2232P	CAAAAACGGCCCC	.	PASS	Atlas-SNP
CENPC1	1060	hgsc.bcm.edu	37	4	68380070	68380070	+	Missense_Mutation	SNP	C	C	T	rs1056787	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	118	188	0	0.517544	0	C|0.973;T|0.027	0.027	strong	.	CENPC1	66	.	NM_001812	exon8	c.G1166A	p.G389D	GTTTCACCTATCA	.	PASS	Atlas-SNP
DEFB114	245928	hgsc.bcm.edu	37	6	49931783	49931783	+	Silent	SNP	A	A	G	rs73737276	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	75	182	0	0.477707	0	A|0.899;G|0.101	0.101	strong	.	DEFB114	12	.	NM_001037499	exon1	c.T36C	p.Y12Y	GGTCACATAACAC	.	PASS	Atlas-SNP
PRODH	5625	hgsc.bcm.edu	37	22	18912678	18912678	+	Missense_Mutation	SNP	A	A	G	rs4819756	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	52	100	0	0.460177	0	A|0.284;G|0.716	0.716	strong	.	PRODH	42	.	NM_016335	exon5	c.T553C	p.W185R	AGGCCCAGTGGGC	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244115	244115	+	Missense_Mutation	SNP	G	G	A	rs7128044	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	86	131	0	1	0	G|0.224;A|0.776	0.776	strong	PSMD13_ENST00000431206,brain,glioma,0,3	PSMD13	53	3	NM_175932	exon2	c.G170A	p.C57Y	ATGAGTGCATTGA	.	PASS	Atlas-SNP
C4orf40	401137	hgsc.bcm.edu	37	4	71024473	71024473	+	Silent	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	20	151	0	0.16	0	.	.	none	.	C4orf40	19	.	NM_214711	exon3	c.T504A	p.P168P	TGAGCCTGCTGCA	.	PASS	Atlas-SNP
SETD4	54093	hgsc.bcm.edu	37	21	37410477	37410477	+	Missense_Mutation	SNP	T	T	C	rs2835239	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	112	201	0	0.543689	0	T|0.963;C|0.037	0.037	strong	.	SETD4	37	.	NM_017438	exon10	c.A1159G	p.I387V	CTTCTATGAAATA	.	PASS	Atlas-SNP
ODAM	54959	hgsc.bcm.edu	37	4	71062426	71062426	+	Silent	SNP	C	C	T	rs17704351	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	84	208	0	0.43299	0	C|0.741;T|0.259	0.259	strong	.	ODAM	38	.	NM_017855	exon2	c.C69T	p.L23L	GCGTCTCATGTCT	.	PASS	Atlas-SNP
KAT2B	8850	hgsc.bcm.edu	37	3	20113830	20113830	+	Silent	SNP	G	G	A	rs3021408	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	41	114	0	0.506173	0	G|0.577;A|0.423	0.423	strong	.	KAT2B	73	.	NM_003884	exon2	c.G309A	p.E103E	GGCCGAGGAGTCT	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466161	10466161	+	Missense_Mutation	SNP	C	C	T	rs79019225	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	44	100	0	0.44898	0	C|0.972;T|0.028	0.028	strong	.	RP1L1	453	.	NM_178857	exon4	c.G5447A	p.G1816D	GCTTCACCCTGCA	.	PASS	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134234269	134234269	+	Missense_Mutation	SNP	A	A	G	rs114723326	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	46	100	0	0.433962	0	A|0.981;G|0.019	0.019	strong	.	GLB1L2	79	.	NM_138342	exon8	c.A781G	p.T261A	CTACTGACCACCT	.	PASS	Atlas-SNP
C12orf60	144608	hgsc.bcm.edu	37	12	14976553	14976553	+	Silent	SNP	G	G	C	rs17761825	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	43	110	0	0.409524	0	G|0.853;C|0.147	0.147	strong	.	C12orf60	31	.	NM_175874	exon2	c.G684C	p.A228A	AAAAGCGATAAAG	.	PASS	Atlas-SNP
DENND1C	79958	hgsc.bcm.edu	37	19	6468331	6468331	+	Missense_Mutation	SNP	T	T	C	rs62107586	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	181	227	0	1	0	A|0.000;C|0.295;G|0.000;T|0.705	0.295	strong	.	DENND1C	93	.	NM_024898	exon22	c.A1705G	p.M569V	CTCCCATGCTAAG	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187541761	187541761	+	Silent	SNP	G	G	A	rs3733407	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	74	148	0	0.564885	0	G|0.921;A|0.079	0.079	strong	.	FAT1	500	.	NM_005245	exon10	c.C5979T	p.T1993T	GGCCTCGGTGGAA	.	PASS	Atlas-SNP
RAB8A	4218	hgsc.bcm.edu	37	19	16238279	16238279	+	Silent	SNP	C	C	T	rs1043308	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	58	114	0	0.42029	0	A|0.000;C|0.710;G|0.000;T|0.290	0.290	strong	.	RAB8A	19	.	NM_005370	exon5	c.C357T	p.L119L	GATACTCGGGAAC	.	PASS	Atlas-SNP
RAPSN	5913	hgsc.bcm.edu	37	11	47470345	47470345	+	Missense_Mutation	SNP	G	G	A	rs34312154	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	17	39	0	0.414634	0	G|0.928;A|0.072	0.072	strong	.	RAPSN	27	.	NM_032645	exon1	c.C172T	p.R58C	TGTAGCGGCCCAT	.	PASS	Atlas-SNP
SERHL2	253190	hgsc.bcm.edu	37	22	42970004	42970004	+	Silent	SNP	G	G	C	rs147451679	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	611	72	398	0	0.11784	0	G|0.998;C|0.002	0.002	strong	SERHL2,NS,carcinoma,0,3	SERHL2	23	3	NM_014509	exon12	c.G888C	p.V296V	GCACGTGGCCAGT	.	scavenged	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	37	10	113920465	113920465	+	Silent	SNP	G	G	A	rs2277207	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	122	197	1	0.512605	0.00507614	G|0.445;A|0.555	0.555	strong	.	GPAM	68	.	NM_001244949	exon16	c.C1656T	p.N552N	CTCATCGTTCCTG	.	PASS	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	37	4	77675916	77675916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	2	181	1	0.01	0.00552486	.	.	none	SHROOM3,NS,carcinoma,+1,1	SHROOM3	134	1	NM_020859	exon7	c.C4280T	p.P1427L	GGCCACCTCCTTC	.	scavenged	Atlas-SNP
SLC22A15	55356	hgsc.bcm.edu	37	1	116534852	116534852	+	Silent	SNP	C	C	T	rs4046190	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	128	138	1	1	0.00724638	C|0.564;T|0.436	0.436	strong	.	SLC22A15	65	.	NM_018420	exon2	c.C288T	p.S96S	CACCTCCATCGCC	.	PASS	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	37	11	117267884	117267884	+	Missense_Mutation	SNP	A	A	G	rs573455	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	34	55	0	0.465753	0	A|0.498;G|0.502	0.502	strong	.	CEP164	121	.	NM_001271933	exon26	c.A3365G	p.Q1122R	TTGTGCAGCAGAC	.	PASS	Atlas-SNP
PLG	5340	hgsc.bcm.edu	37	6	161132146	161132146	+	Silent	SNP	C	C	T	rs4757	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	107	233	0	0.411538	0	C|0.671;T|0.329	0.329	strong	.	PLG	150	.	NM_001168338	exon4	c.C330T	p.N110N	AAAGAACTACAGA	.	PASS	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93637015	93637015	+	Silent	SNP	C	C	T	rs2290890	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	47	64	0	0.546512	0	C|0.825;T|0.175	0.175	strong	.	SYK	132	.	NM_003177	exon9	c.C1065T	p.P355P	GGACCCCGAGGAG	.	PASS	Atlas-SNP
CHFR	55743	hgsc.bcm.edu	37	12	133423662	133423662	+	Missense_Mutation	SNP	C	C	T	rs2306536	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	18	35	0	0.439024	0	C|0.795;T|0.205	0.205	strong	CHFR_ENST00000432561,colon,carcinoma,0,2	CHFR	83	2	NM_001161344	exon15	c.G1738A	p.V580M	GAGCCACGAGGCT	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44067400	44067400	+	Missense_Mutation	SNP	T	T	C	rs10445337	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	89	0	1	0	T|0.856;C|0.144	0.144	strong	.	MAPT	135	.	NM_001123066	exon8	c.T1339C	p.S447P	GTCACTTCCCGAA	.	PASS	Atlas-SNP
TRIM48	79097	hgsc.bcm.edu	37	11	55029787	55029787	+	Missense_Mutation	SNP	G	G	A	rs12799381	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	66	165	0	0.44898	0	G|0.891;A|0.109	0.109	strong	TRIM48_ENST00000417545,caecum,carcinoma,+1,2	TRIM48	149	2	NM_024114	exon1	c.G44A	p.R15Q	CCCAGCGGTGAGT	.	PASS	Atlas-SNP
PSG1	5669	hgsc.bcm.edu	37	19	43373078	43373078	+	Missense_Mutation	SNP	C	C	G	rs143301512	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	23	64	0	0.338235	0	C|0.944;G|0.056	0.056	strong	.	PSG1	196	.	NM_001184826	exon4	c.G818C	p.W273S	AGCCACCAAATGT	.	PASS	Atlas-SNP
SYNE4	163183	hgsc.bcm.edu	37	19	36499173	36499173	+	Silent	SNP	C	C	T	rs2285424	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	52	102	0	0.448276	0	C|0.707;T|0.293	0.293	strong	.	.	.	.	NM_001039876	exon2	c.G225A	p.P75P	CCATCTCGGGGGG	.	PASS	Atlas-SNP
DNASE2B	58511	hgsc.bcm.edu	37	1	84878228	84878228	+	Silent	SNP	C	C	T	rs7511984	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	26	44	0	0.42623	0	C|0.841;T|0.159	0.159	strong	.	DNASE2B	40	.	NM_021233	exon5	c.C744T	p.D248D	TCTTGACGGTATG	.	PASS	Atlas-SNP
C1QTNF9B	387911	hgsc.bcm.edu	37	13	24465537	24465537	+	Missense_Mutation	SNP	C	C	T	rs140860568	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	99	102	0	0.464789	0	C|0.980;T|0.020	0.020	strong	.	C1QTNF9B	27	.	NM_001007537	exon3	c.G893A	p.G298E	TCATCCCCGAGCT	.	PASS	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	37	19	5455971	5455971	+	Missense_Mutation	SNP	G	G	T	rs8103406	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	25	18	0	1	0	G|0.460;T|0.540	0.540	strong	.	ZNRF4	59	.	NM_181710	exon1	c.G469T	p.A157S	CTGGGCGCCATCG	.	PASS	Atlas-SNP
ZNF593	51042	hgsc.bcm.edu	37	1	26496651	26496651	+	Silent	SNP	T	T	C	rs7087	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	11	6	10	0	0.545455	0	T|0.484;C|0.516	0.516	strong	.	ZNF593	6	.	NM_015871	exon1	c.T177C	p.G59G	GGGCGGTCTGCAC	.	PASS	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	37	4	100521805	100521805	+	Missense_Mutation	SNP	A	A	C	rs17029215	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	56	95	0	0.474576	0	A|0.929;C|0.071	0.071	strong	.	MTTP	127	.	NM_000253	exon10	c.A1151C	p.D384A	AAAGTGACAGCAG	.	PASS	Atlas-SNP
PATE1	160065	hgsc.bcm.edu	37	11	125617606	125617606	+	Missense_Mutation	SNP	G	G	A	rs537916	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	22	11	41	0	0.5	0	G|0.697;A|0.303	0.303	strong	.	PATE1	21	.	NM_138294	exon4	c.G136A	p.V46I	GAAATTGTTCAGT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105416649	105416649	+	Silent	SNP	G	G	A	rs28593209	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	235	172	0	1	0	G|0.650;A|0.350	0.350	strong	AHNAK2_ENST00000333244,colon,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.C5139T	p.A1713A	CAGGTCGGCGGAA	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114490308	114490308	+	Missense_Mutation	SNP	T	T	C	rs7470491	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	99	117	0	1	0	T|0.172;C|0.828	0.828	strong	.	C9orf84	207	.	NM_173521	exon11	c.A1247G	p.H416R	GAAGAATGACTTT	.	PASS	Atlas-SNP
MMEL1	79258	hgsc.bcm.edu	37	1	2560903	2560903	+	Silent	SNP	T	T	G	rs4648659	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	91	86	0	1	0	T|0.424;G|0.576	0.576	strong	.	MMEL1	64	.	NM_033467	exon2	c.A21C	p.P7P	CCCCACTGGGCCT	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179427536	179427536	+	Missense_Mutation	SNP	T	T	C	rs3829746	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	49	123	0	0.445455	0	T|0.555;C|0.445	0.445	strong	.	TTN	18412	.	NM_001267550	exon326	c.A83323G	p.I27775V	CTCTTATGGTCAA	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	37	18	21494509	21494509	+	Missense_Mutation	SNP	C	C	T	rs147463397	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	27	38	0	0.55102	0	C|1.000;T|0.000	0.000	strong	.	LAMA3	397	.	NM_198129	exon57	c.C7465T	p.R2489W	ATGGATCGGGTGA	.	PASS	Atlas-SNP
COASY	80347	hgsc.bcm.edu	37	17	40716520	40716520	+	Silent	SNP	A	A	G	rs598126	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	32	83	0	0.432432	0	A|0.515;G|0.485	0.485	strong	.	COASY	45	.	NM_001042532	exon5	c.A1059G	p.T353T	ACATACAGAGAAT	.	PASS	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	37	17	38978462	38978462	+	Missense_Mutation	SNP	C	C	T	rs77919366	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	71	106	0	0.568	0	C|0.838;T|0.162	0.162	strong	KRT10,NS,carcinoma,0,1	KRT10	56	1	NM_000421	exon1	c.G376A	p.G126S	CAAAGCCGCCTCC	.	PASS	Atlas-SNP
SLC35E4	339665	hgsc.bcm.edu	37	22	31032881	31032881	+	Silent	SNP	G	G	A	rs8136373	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	22	42	0	0.578947	0	G|0.900;A|0.100	0.100	strong	.	SLC35E4	22	.	NM_001001479	exon1	c.G444A	p.L148L	CACCCTGGCCCTG	.	PASS	Atlas-SNP
OR10T2	128360	hgsc.bcm.edu	37	1	158368964	158368964	+	Missense_Mutation	SNP	C	C	T	rs61818749	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	45	125	0	0.48913	0	C|0.918;T|0.082	0.082	strong	.	OR10T2	76	.	NM_001004475	exon1	c.G293A	p.C98Y	GTGGCACAGGCCA	.	PASS	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	37	9	111663793	111663793	+	Silent	SNP	C	C	T	rs10979605	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	51	107	0	0.495146	0	C|0.909;T|0.091	0.091	strong	.	IKBKAP	122	.	NM_003640	exon18	c.G1926A	p.T642T	AAATGACGTGATA	.	PASS	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70924697	70924697	+	Missense_Mutation	SNP	A	A	G	rs45545935	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	26	145	0	0.313253	0	A|0.947;G|0.053	0.053	strong	ADAM21_ENST00000267499,NS,carcinoma,0,1	ADAM21	181	1	NM_003813	exon2	c.A481G	p.I161V	TATAAGATAAACA	.	PASS	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	37	3	108117612	108117612	+	Missense_Mutation	SNP	G	G	A	rs76478083	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	97	113	0	0.530055	0	G|0.993;A|0.007	0.007	strong	.	MYH15	223	.	NM_014981	exon36	c.C5065T	p.R1689C	AGTTGCGCCGCTC	.	PASS	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	37	15	24922208	24922208	+	Silent	SNP	C	C	G	rs12905237	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	31	77	0	0.462687	0	C|0.867;G|0.133	0.133	strong	.	.	.	.	NM_018958	exon1	c.C1194G	p.A398A	GCCTGCCCCTTCT	.	PASS	Atlas-SNP
HOMEZ	57594	hgsc.bcm.edu	37	14	23744829	23744829	+	Silent	SNP	C	C	T	rs79723196	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	14	109	0	0.133333	0	.	.	weak	.	HOMEZ	80	.	NM_020834	exon2	c.G1608A	p.E536E	ATCTTCCTCCTCC	.	PASS	Atlas-SNP
OR5AR1	219493	hgsc.bcm.edu	37	11	56431834	56431834	+	Missense_Mutation	SNP	A	A	G	rs56067375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	88	162	0	0.475676	0	A|0.952;G|0.048	0.048	strong	OR5AR1,NS,carcinoma,0,1	OR5AR1	68	1	NM_001004730	exon1	c.A673G	p.I225V	GTTGCAATCATCA	.	PASS	Atlas-SNP
FPR1	2357	hgsc.bcm.edu	37	19	52249702	52249702	+	Silent	SNP	G	G	T	rs2070746	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	21	41	0	0.477273	0	G|0.682;T|0.318	0.318	strong	.	FPR1	64	.	NM_001193306	exon3	c.C546A	p.P182P	GGTCCAGGGCGAA	.	PASS	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	37	8	52366200	52366200	+	Silent	SNP	G	G	A	rs6473599	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	226	239	0	0.995595	0	G|0.234;A|0.764	0.764	strong	.	PXDNL	414	.	NM_144651	exon10	c.C1128T	p.H376H	TGCCACGTGCCTG	.	PASS	Atlas-SNP
MBD3L2	125997	hgsc.bcm.edu	37	19	7051376	7051376	+	Missense_Mutation	SNP	G	G	A	rs76391970		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	37	257	121	0.205556	0.470817	.	.	weak	MBD3L2,cerebellum,glioma,0,1	MBD3L2	2	1	NM_144614	exon2	c.G370A	p.G124S	ACGGCCGGTGAAT	.	scavenged	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99155984	99155984	+	Silent	SNP	G	G	A	rs3814553	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	34	106	0	0.507463	0	G|0.618;A|0.382	0.382	strong	.	RRP12	97	.	NM_001145114	exon3	c.C444T	p.F148F	AGCAGCGAAGTAC	.	PASS	Atlas-SNP
PKM	5315	hgsc.bcm.edu	37	15	72502141	72502141	+	Silent	SNP	G	G	A	rs10514	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	94	174	0	0.489583	0	G|0.939;A|0.061	0.061	strong	.	PKM	25	.	NM_001206796	exon6	c.C660T	p.N220N	GTAGGCGTTATCC	.	PASS	Atlas-SNP
OAS3	4940	hgsc.bcm.edu	37	12	113401199	113401199	+	Silent	SNP	G	G	A	rs45603631	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	66	132	0	0.464789	0	G|0.911;A|0.089	0.089	strong	.	OAS3	63	.	NM_006187	exon10	c.G2166A	p.A722A	AGCAGCGCTGGGG	.	PASS	Atlas-SNP
SURF6	6838	hgsc.bcm.edu	37	9	136199503	136199503	+	Missense_Mutation	SNP	G	G	A	rs886090	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	22	38	0	0.55	0	G|0.745;A|0.255	0.255	strong	.	SURF6	32	.	NM_006753	exon4	c.C487T	p.R163W	TCGCCCGCAGCTC	.	PASS	Atlas-SNP
ACTG1	71	hgsc.bcm.edu	37	17	79478007	79478007	+	Silent	SNP	G	G	A	rs1135989	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	74	136	0	0.486842	0	G|0.711;A|0.289	0.289	strong	.	ACTG1	55	.	NM_001614	exon5	c.C930T	p.A310A	CCTGTCGGCAATG	.	PASS	Atlas-SNP
IFNA10	3446	hgsc.bcm.edu	37	9	21206605	21206605	+	Missense_Mutation	SNP	C	C	G	rs28368148	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	564	265	475	0	0.469858	0	C|0.991;G|0.009	0.009	strong	.	IFNA10	29	.	NM_002171	exon1	c.G492C	p.W164C	AACCTCCCAGGCA	.	PASS	Atlas-SNP
C4orf40	401137	hgsc.bcm.edu	37	4	71024481	71024481	+	Missense_Mutation	SNP	A	A	G	rs138334849	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	36	157	0	0.248276	0	A|0.981;G|0.019	0.019	strong	C4orf40,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	C4orf40	19	1	NM_214711	exon3	c.A512G	p.E171G	CTGCAGAGGCACC	.	PASS	Atlas-SNP
MLIP	90523	hgsc.bcm.edu	37	6	53883843	53883843	+	Missense_Mutation	SNP	G	G	A	rs17625497	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	46	116	0	0.383333	0	G|0.784;A|0.216	0.216	strong	.	MLIP	84	.	NM_138569	exon1	c.G17A	p.R6H	AAAAGCGTGAAAA	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244108	244108	+	Missense_Mutation	SNP	A	A	G	rs7107362	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	131	0	1	0	A|0.215;G|0.785	0.785	strong	.	PSMD13	53	.	NM_175932	exon2	c.A163G	p.N55D	TTTGAAAATGAGT	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117622184	117622184	+	Missense_Mutation	SNP	G	G	C	rs619203	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	34	88	1	0.390805	0.0113636	G|0.818;C|0.182	0.182	strong	ROS1_ENST00000368508,NS,carcinoma,0,1	ROS1	728	1	NM_002944	exon42	c.C6686G	p.S2229C	TCTCTGGACTTAT	.	scavenged	Atlas-SNP
CLEC18A	348174	hgsc.bcm.edu	37	16	69996928	69996928	+	Missense_Mutation	SNP	G	G	A	rs616457	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	424	53	478	0	0.125	0	G|0.500;A|0.500	0.500	weak	CLEC18A,NS,carcinoma,0,1	CLEC18A	9	1	NM_001271197	exon12	c.G1261A	p.D421N	TGGAACGACCAGC	.	scavenged	Atlas-SNP
PLD2	5338	hgsc.bcm.edu	37	17	4712617	4712617	+	Missense_Mutation	SNP	C	C	T	rs2286672	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	38	86	0	0.395833	0	C|0.890;T|0.110	0.110	strong	.	PLD2	138	.	NM_001243108	exon6	c.C514T	p.R172C	CTCAACCGTCTCT	.	PASS	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	37	20	39990614	39990614	+	Missense_Mutation	SNP	C	C	T	rs2235592	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	37	57	0	0.480519	0	C|0.743;T|0.257	0.257	strong	.	EMILIN3	63	.	NM_052846	exon4	c.G1595A	p.S532N	ACGAGGCTGTCCA	.	PASS	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	37	3	148562310	148562310	+	Missense_Mutation	SNP	G	G	A	rs1059502	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	162	195	0	0.987805	0	G|0.743;A|0.257	0.257	strong	.	CPB1	74	.	NM_001871	exon7	c.G622A	p.D208N	CTTCTCGACAAGT	.	PASS	Atlas-SNP
TMEM132A	54972	hgsc.bcm.edu	37	11	60696399	60696399	+	Missense_Mutation	SNP	G	G	A	rs61751216	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	35	83	0	0.416667	0	G|0.976;A|0.024	0.024	strong	.	TMEM132A	135	.	NM_178031	exon4	c.G833A	p.R278Q	TGCTTCGGCACAA	.	PASS	Atlas-SNP
ZNF485	220992	hgsc.bcm.edu	37	10	44112763	44112763	+	Silent	SNP	C	C	G	rs7069748	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	14	24	0	0.466667	0	C|0.938;G|0.062	0.062	strong	.	ZNF485	102	.	NM_145312	exon5	c.C1272G	p.A424A	TTCAGCCCTTAAG	.	PASS	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	37	20	1616137	1616137	+	Missense_Mutation	SNP	G	G	A	rs6034239	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	367	196	293	0	0.53406	0	G|0.459;A|0.541	0.541	strong	.	SIRPG	61	.	NM_018556	exon4	c.C857T	p.S286L	TTCTCCGACCAGG	.	PASS	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	37	13	96506633	96506633	+	Missense_Mutation	SNP	C	C	T	rs145358686	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	78	175	0	0.5	0	C|0.997;T|0.003	0.003	strong	.	UGGT2	127	.	NM_020121	exon35	c.G4105A	p.G1369R	GATATCCATCCAT	.	PASS	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	37	5	52379277	52379277	+	Silent	SNP	C	C	T	rs2303122	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	45	85	0	0.459184	0	T|0.351;G|0.004	0.351	strong	ITGA2,colon,carcinoma,0,1	ITGA2	211	1	NM_002203	exon27	c.C3252T	p.F1084F	GACTTTCGCATCA	.	PASS	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28824793	28824793	+	Missense_Mutation	SNP	C	C	G	rs7601771	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	127	156	1	1	0.00641026	C|0.383;G|0.617	0.617	strong	.	PLB1	255	.	NM_153021	exon38	c.C2635G	p.H879D	TTTGTTCACCATC	.	PASS	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	37	22	43936219	43936219	+	Missense_Mutation	SNP	C	C	T	rs61995890	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	33	59	0	0.478261	0	C|0.860;T|0.140	0.140	strong	.	EFCAB6	177	.	NM_022785	exon28	c.G3667A	p.E1223K	GCATCTCGTTCCA	.	PASS	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	37	15	42159290	42159290	+	Missense_Mutation	SNP	C	C	T	rs2290553	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	22	25	0	0.536585	0	C|0.858;T|0.142	0.142	strong	.	SPTBN5	171	.	NM_016642	exon36	c.G6242A	p.R2081Q	GGGCGCCGGAGCG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179436020	179436020	+	Missense_Mutation	SNP	G	G	A	rs744426	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	49	148	0	0.510417	0	G|0.817;N|0.001	.	strong	TTN_ENST00000359218,brain,glioma,+1,10	TTN	18412	10	NM_001267550	exon326	c.C74839T	p.R24947C	CCTTGCGTTCTAG	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	37	10	459940	459940	+	Silent	SNP	G	G	A	rs4881274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	112	77	0	1	0	G|0.440;A|0.560	0.560	strong	.	DIP2C	195	.	NM_014974	exon8	c.C970T	p.L324L	TCTGCAGTGCGGC	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291454	1291454	+	Missense_Mutation	SNP	G	G	A	rs201351744	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	261	72	326	0	0.275862	0	.	.	weak	TPSAB1,NS,carcinoma,0,2	TPSAB1	24	2	NM_003294	exon4	c.G253A	p.A85T	CTGGCCGCCCTCA	.	scavenged	Atlas-SNP
EVC	2121	hgsc.bcm.edu	37	4	5785442	5785442	+	Missense_Mutation	SNP	G	G	A	rs1383180	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	84	143	0	0.488372	0	G|0.687;T|0.001	.	strong	.	EVC	90	.	NM_153717	exon12	c.G1727A	p.R576Q	GCTTCCGGAGGCA	.	PASS	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	37	5	60628411	60628411	+	Silent	SNP	G	G	T	rs75429795	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	55	100	0	0.52381	0	G|0.881;T|0.119	0.119	strong	.	ZSWIM6	51	.	NM_020928	exon1	c.G312T	p.P104P	GGAGCCGGTGCAG	.	PASS	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	37	1	79392756	79392756	+	Missense_Mutation	SNP	C	C	A	rs12754818	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	39	98	0	0.402062	0	C|0.374;A|0.625	0.625	strong	.	ELTD1	143	.	NM_022159	exon8	c.G898T	p.V300L	AATATACAAATGC	.	PASS	Atlas-SNP
SIAE	54414	hgsc.bcm.edu	37	11	124524627	124524627	+	Silent	SNP	A	A	G	rs1942663	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	47	84	0	0.580247	0	A|0.804;G|0.196	0.196	strong	SIAE,scalp,malignant_melanoma,-1,2	SIAE	37	2	NM_170601	exon4	c.T468C	p.S156S	AGAGACAGAGAGG	.	PASS	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	37	16	49671218	49671218	+	Silent	SNP	C	C	T	rs16947741	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	104	194	1	0.464286	0.00515464	C|0.973;T|0.027	0.027	strong	ZNF423_ENST00000262383,NS,carcinoma,0,2	ZNF423	463	2	NM_015069	exon4	c.G1845A	p.P615P	CCGCTTCGGGGAA	.	scavenged	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73501556	73501556	+	Missense_Mutation	SNP	G	G	A	rs1227051	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	119	107	0	0.991667	0	G|0.250;T|0.003	.	strong	.	CDH23	365	.	NM_022124	exon36	c.G4723A	p.A1575T	GACATGGCCTTCC	.	PASS	Atlas-SNP
CATSPER4	378807	hgsc.bcm.edu	37	1	26517891	26517891	+	Silent	SNP	C	C	T	rs11247867	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	82	172	0	0.476744	0	C|0.822;T|0.178	0.178	strong	CATSPER4,caecum,carcinoma,0,1	CATSPER4	59	1	NM_198137	exon2	c.C327T	p.I109I	CACCATCGCTCTC	.	PASS	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	37	20	33587198	33587198	+	Missense_Mutation	SNP	G	G	C	rs3746435	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	40	115	0	0.444444	0	G|0.830;C|0.170	0.170	strong	.	MYH7B	145	.	NM_020884	exon36	c.G4656C	p.K1552N	GAACAAGAACCTG	.	PASS	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	37	6	157405930	157405930	+	Silent	SNP	G	G	A	rs3734441	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	56	141	0	0.54902	0	G|0.515;A|0.485	0.485	strong	ARID1B_ENST00000346085,NS,carcinoma,0,2	ARID1B	320	2	NM_020732	exon6	c.G2172A	p.A724A	ACATGCGTCCCCT	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370995	240370995	+	Silent	SNP	G	G	A	rs201866430	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	13	108	1	0.111111	0.00925926	G|0.993;A|0.007	0.007	strong	FMN2,NS,carcinoma,0,1	FMN2	451	1	NM_020066	exon5	c.G2883A	p.G961G	TCCCGGGGCAGGC	.	scavenged	Atlas-SNP
USP48	84196	hgsc.bcm.edu	37	1	22084201	22084201	+	Silent	SNP	A	A	G	rs150521027	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	47	120	0	0.52809	0	A|0.996;G|0.004	0.004	strong	.	USP48	91	.	NM_001032730	exon2	c.T210C	p.N70N	AAAACTATTTTCA	.	PASS	Atlas-SNP
CCL4	6351	hgsc.bcm.edu	37	17	34432663	34432663	+	Silent	SNP	A	A	G	rs1049807	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	459	252	437	1	0.54902	0.00228833	A|0.816;G|0.184	0.184	strong	.	CCL4	14	.	NM_002984	exon3	c.A237G	p.E79E	CAGTGAATCCTGG	.	PASS	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37442591	37442591	+	Splice_Site	SNP	G	G	T	rs200154690	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	429	59	545	0	0.137529	0	G|0.999;T|0.001	0.001	weak	ANKRD30A,NS,carcinoma,+1,2	ANKRD30A	448	2	NM_052997	exon13	c.1630+1G>T	.	TAGAAGGTAAGAA	.	scavenged	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	37	13	76335109	76335109	+	Silent	SNP	A	A	G	rs17706535	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	41	77	0	0.506173	0	A|0.921;G|0.079	0.079	strong	.	LMO7	334	.	NM_005358	exon5	c.A408G	p.G136G	GATTGGATTGAAA	.	PASS	Atlas-SNP
ASPH	444	hgsc.bcm.edu	37	8	62489334	62489334	+	Silent	SNP	C	C	T	rs16927574	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	41	97	0	0.450549	0	C|0.883;N|0.000	.	strong	.	ASPH	87	.	NM_004318	exon16	c.G1146A	p.A382A	TACCTGCGCCTTC	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78400884	78400884	+	Silent	SNP	G	G	A	rs34276383	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	19	21	0	0.487179	0	G|0.867;A|0.133	0.133	strong	NAV3,NS,carcinoma,0,1	NAV3	506	1	NM_014903	exon8	c.G1566A	p.P522P	AATTCCGTCTTCC	.	PASS	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	37	19	36352906	36352906	+	Missense_Mutation	SNP	A	A	G	rs144457307	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	33	62	0	0.478261	0	A|0.999;G|0.001	0.001	strong	.	KIRREL2	170	.	NM_199180	exon11	c.A1490G	p.Q497R	GTGCCCAGGCCAG	.	PASS	Atlas-SNP
TMC5	79838	hgsc.bcm.edu	37	16	19492752	19492752	+	Silent	SNP	C	C	T	rs35421097	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	57	122	0	0.463415	0	C|0.981;T|0.019	0.019	strong	.	TMC5	169	.	NM_001105249	exon15	c.C2328T	p.N776N	CAGGAACGTTCTA	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190876257	190876257	+	Missense_Mutation	SNP	G	G	A	rs75585360	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	5	326	0	0.0171821	0	.	.	weak	FRG1,NS,carcinoma,0,1	FRG1	76	1	NM_004477	exon5	c.G383A	p.R128H	TTGGGCGTTCAGA	.	scavenged	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	2	54	1	0.0327869	0.0185185	.	.	weak	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27	337	10	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	scavenged	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24418768	24418768	+	Silent	SNP	T	T	C	rs7556176	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	69	139	0	0.472603	0	T|0.586;C|0.414	0.414	strong	.	MYOM3	131	.	NM_152372	exon11	c.A1128G	p.P376P	GTTCAGTGGGGAG	.	PASS	Atlas-SNP
COQ6	51004	hgsc.bcm.edu	37	14	74428445	74428445	+	Missense_Mutation	SNP	G	G	A	rs8500	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	48	71	0	0.505263	0	G|0.641;A|0.359	0.359	strong	.	COQ6	27	.	NM_182476	exon11	c.G1216A	p.V406M	GGTTCCGTGAGCC	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43923683	43923683	+	Missense_Mutation	SNP	A	A	G	rs12185268	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	89	122	0	1	0	A|0.853;G|0.147	0.147	strong	.	.	.	.	NM_175882	exon1	c.A1411G	p.I471V	CGTCAGATCTACT	.	PASS	Atlas-SNP
CD8B	926	hgsc.bcm.edu	37	2	87042825	87042825	+	Missense_Mutation	SNP	T	T	C	rs35555413	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	70	159	0	0.47619	0	T|0.864;C|0.136	0.136	strong	.	CD8B	37	.	NM_172213	exon6	c.A637G	p.I213V	CTGATATACCTTC	.	PASS	Atlas-SNP
STON1-GTF2A1L	286749	hgsc.bcm.edu	37	2	48873978	48873978	+	Missense_Mutation	SNP	A	A	G	rs10432667	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	77	150	0	0.432584	0	A|0.780;G|0.220	0.220	strong	.	STON1-GTF2A1L	180	.	NM_001198593	exon8	c.A2887G	p.N963D	AATTCTAATGTGG	.	PASS	Atlas-SNP
PANK4	55229	hgsc.bcm.edu	37	1	2445832	2445832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	44	66	0	0.556962	0	.	.	none	.	PANK4	64	.	NM_018216	exon11	c.A1448G	p.K483R	CAGTACTTCTGCC	.	PASS	Atlas-SNP
SLC25A29	123096	hgsc.bcm.edu	37	14	100759277	100759277	+	Silent	SNP	C	C	T	rs3742379	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	33	60	0	0.515625	0	C|0.688;G|0.000;T|0.312	0.312	strong	SLC25A29,NS,carcinoma,0,1	SLC25A29	14	1	NM_001039355	exon4	c.G255A	p.R85R	CAGGGCCCGGAGG	.	PASS	Atlas-SNP
GDPD4	220032	hgsc.bcm.edu	37	11	76954812	76954812	+	Missense_Mutation	SNP	T	T	C	rs11237145	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	32	69	0	0.421053	0	C|0.254;N|0.000	0.254	strong	.	GDPD4	49	.	NM_182833	exon12	c.A1168G	p.I390V	TTTCAATGGATAC	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	890165	890165	+	Silent	SNP	G	G	A	rs6678	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	27	63	0	0.482143	0	G|0.765;A|0.235	0.235	strong	.	MED16	61	.	NM_005481	exon3	c.C249T	p.A83A	GGTGATGGCCTCG	.	PASS	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	37	19	5110794	5110794	+	Silent	SNP	A	A	G	rs2613739	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	30	71	0	0.454545	0	A|0.406;G|0.594	0.594	strong	.	KDM4B	120	.	NM_015015	exon10	c.A1080G	p.A360A	GAGTGCATCCCGG	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123268859	123268859	+	Missense_Mutation	SNP	A	A	G	rs2306369	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	107	204	0	0.519417	0	A|0.944;G|0.056	0.056	strong	.	KIAA1109	424	.	NM_015312	exon74	c.A13054G	p.T4352A	CCAGGGACAGTAG	.	PASS	Atlas-SNP
TPR	7175	hgsc.bcm.edu	37	1	186314809	186314809	+	Missense_Mutation	SNP	G	G	A	rs200209324	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	35	64	0	0.486111	0	G|0.998;A|0.002	0.002	strong	.	TPR	441	.	NM_003292	exon24	c.C3116T	p.T1039I	GAAAGTGTTTTCT	.	PASS	Atlas-SNP
AGMAT	79814	hgsc.bcm.edu	37	1	15909744	15909744	+	Missense_Mutation	SNP	C	C	T	rs11580170	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	57	85	0	0.564356	0	C|0.690;T|0.310	0.310	strong	.	AGMAT	25	.	NM_024758	exon2	c.G419A	p.R140Q	TGAATTCGCCGGC	.	PASS	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444693	61444693	+	Missense_Mutation	SNP	G	G	A	rs35813009	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	7	5	9	1	0.714286	0.111111	G|0.780;A|0.220	0.220	strong	OGFR,rectum,carcinoma,0,2	OGFR	63	2	NM_007346	exon7	c.G1726A	p.E576K	CCAGCCGAGAGCC	.	scavenged	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	37	22	40058393	40058393	+	Missense_Mutation	SNP	A	A	T	rs58021347	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	7	13	0	0.466667	0	A|0.997;T|0.003	0.003	strong	.	CACNA1I	264	.	NM_021096	exon17	c.A3325T	p.M1109L	ACCAAGATGGGCG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412138	105412138	+	Missense_Mutation	SNP	A	A	G	rs200384326	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	25	225	0	1	0	.	.	weak	AHNAK2_ENST00000333244,NS,neuroblastoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.T9650C	p.L3217P	CCCTCGAGAACGT	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152188999	152188999	+	Silent	SNP	G	G	A	rs149648668	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	426	48	452	2	0.112676	0.00442478	G|0.947;A|0.053	0.053	strong	HRNR,NS,carcinoma,0,2	HRNR	403	2	NM_001009931	exon3	c.C5106T	p.H1702H	TCGGCCGTGGCCC	.	scavenged	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	37	17	73888423	73888423	+	Silent	SNP	A	A	G	rs7222755	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	19	48	0	0.413043	0	A|0.591;G|0.409	0.409	strong	.	TRIM65	23	.	NM_001256124	exon3	c.T669C	p.H223H	CTCCAAATGGACC	.	PASS	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	37	19	36594369	36594369	+	Silent	SNP	C	C	T	rs45470992	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	55	150	0	0.528846	0	C|0.963;T|0.037	0.037	strong	.	WDR62	102	.	NM_001083961	exon30	c.C3639T	p.S1213S	CCCCTCCACCTGT	.	PASS	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	37	14	78205189	78205189	+	Silent	SNP	T	T	C	rs147154490	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	70	140	0	0.416667	0	T|0.999;C|0.001	0.001	strong	.	SNW1	44	.	NM_012245	exon5	c.A465G	p.V155V	CTGTGATACAGAT	.	PASS	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	37	16	72184566	72184566	+	Missense_Mutation	SNP	C	C	T	rs35370634	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	73	136	0	0.603306	0	C|0.891;T|0.109	0.109	strong	.	PMFBP1	101	.	NM_031293	exon5	c.G577A	p.E193K	GTAACTCGATGTT	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55595018	55595018	+	Silent	SNP	A	A	G	rs61745634	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	30	131	0	0.247934	0	A|0.993;G|0.007	0.007	strong	OR5L2,NS,carcinoma,0,2	OR5L2	135	2	NM_001004739	exon1	c.A324G	p.G108G	ATGTGGAGTCACT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280900	152280900	+	Missense_Mutation	SNP	T	T	G	rs74129452	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	496	136	325	1	0.274194	0.00307692	T|0.872;G|0.128	0.128	strong	FLG,right_upper_lobe,carcinoma,-2,1	FLG	900	1	NM_002016	exon3	c.A6462C	p.Q2154H	TTGCTCTTGGTGG	.	scavenged	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105411260	105411260	+	Missense_Mutation	SNP	A	A	G	rs2819425	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	100	203	0	0.526316	0	A|0.978;G|0.022	0.022	strong	AHNAK2_ENST00000333244,NS,carcinoma,+1,1	AHNAK2	719	1	NM_138420	exon7	c.T10528C	p.S3510P	TGGAGGAGAGGCT	.	PASS	Atlas-SNP
RIC3	79608	hgsc.bcm.edu	37	11	8132301	8132301	+	Missense_Mutation	SNP	C	C	T	rs11826236	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	92	205	0	0.508287	0	C|0.914;T|0.086	0.086	strong	.	RIC3	42	.	NM_001206671	exon6	c.G1054A	p.D352N	CTTTATCGGTGCT	.	PASS	Atlas-SNP
TMEM140	55281	hgsc.bcm.edu	37	7	134849577	134849577	+	Silent	SNP	A	A	C	rs2288237	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	72	159	0	0.467532	0	A|0.538;C|0.462	0.462	strong	TMEM140,NS,carcinoma,+1,1	TMEM140	18	1	NM_018295	exon2	c.A384C	p.A128A	GCTGGCAGGCGGC	.	PASS	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6591009	6591009	+	Missense_Mutation	SNP	C	C	T	rs11761490	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	26	51	0	0.604651	0	C|0.950;T|0.050	0.050	strong	GRID2IP_ENST00000457091,NS,carcinoma,+1,2	GRID2IP	82	2	NM_001145118	exon1	c.G59A	p.R20Q	CCTAGCCGGAAGC	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89858417	89858417	+	Silent	SNP	C	C	A	rs1800331	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	88	208	0	0.478261	0	C|0.934;A|0.066	0.066	strong	.	FANCA	99	.	NM_000135	exon13	c.G1143T	p.T381T	CTCCTGCGTTTCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105408030	105408030	+	Silent	SNP	A	A	G	rs9671643	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	166	137	0	0.994012	0	A|0.469;G|0.531	0.531	strong	AHNAK2_ENST00000333244,caecum,carcinoma,-2,1	AHNAK2	719	1	NM_138420	exon7	c.T13758C	p.D4586D	CTCCACATCGGGG	.	PASS	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	37	1	3102852	3102852	+	Silent	SNP	G	G	A	rs199614349	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	123	198	0	0.5125	0	G|0.989;A|0.011	0.011	strong	.	PRDM16	147	.	NM_022114	exon2	c.G201A	p.P67P	CTCGCCGTACGAG	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7817856	7817856	+	Missense_Mutation	SNP	C	C	T	rs78460198	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	166	176	0	1	0	C|0.739;T|0.261	0.261	strong	OR5P2,colon,carcinoma,0,2	OR5P2	68	2	NM_153444	exon1	c.G634A	p.V212I	AGCAGACGGCTAT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152279920	152279920	+	Missense_Mutation	SNP	A	A	G	rs55650366	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	343	181	278	0	0.527697	0	A|0.792;G|0.208	0.208	strong	.	FLG	900	.	NM_002016	exon3	c.T7442C	p.L2481S	TCTACCAATTGCT	.	PASS	Atlas-SNP
OR52B6	340980	hgsc.bcm.edu	37	11	5602605	5602605	+	Missense_Mutation	SNP	G	G	A	rs2341433	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	46	95	0	0.511111	0	G|0.494;A|0.506	0.506	strong	.	OR52B6	37	.	NM_001005162	exon1	c.G499A	p.A167T	ACTGCCGCCCTGA	.	PASS	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	37	19	14024269	14024269	+	Missense_Mutation	SNP	C	C	T	rs61740117	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	56	87	0	0.523364	0	C|0.995;T|0.005	0.005	strong	.	CC2D1A	67	.	NM_017721	exon6	c.C566T	p.A189V	ACGAAGCGGACAT	.	PASS	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	37	5	115338958	115338958	+	Missense_Mutation	SNP	G	G	T	rs17138632	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	36	102	0	0.439024	0	G|0.972;T|0.028	0.028	strong	FLJ90650,NS,carcinoma,0,1	.	.	1	NM_173800	exon12	c.G1918T	p.V640F	ATGCAAGTTTCAG	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123845211	123845211	+	Missense_Mutation	SNP	G	G	A	rs11200387	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	24	34	0	0.461538	0	G|0.826;A|0.174	0.174	strong	.	TACC2	271	.	NM_206862	exon4	c.G3196A	p.A1066T	GCGCCCGCCAGCC	.	PASS	Atlas-SNP
MEPE	56955	hgsc.bcm.edu	37	4	88767008	88767008	+	Missense_Mutation	SNP	G	G	A	rs17013285	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	22	34	0	0.511628	0	G|0.854;A|0.146	0.146	strong	.	MEPE	86	.	NM_020203	exon4	c.G988A	p.V330I	GATGCTGTTGATG	.	PASS	Atlas-SNP
PLG	5340	hgsc.bcm.edu	37	6	161152240	161152240	+	Missense_Mutation	SNP	G	G	A	rs4252125	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	38	95	0	0.4	0	G|0.784;A|0.216	0.216	strong	.	PLG	150	.	NM_000301	exon11	c.G1414A	p.D472N	CTTCCAGATGTAG	.	PASS	Atlas-SNP
SMU1	55234	hgsc.bcm.edu	37	9	33071879	33071879	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	51	113	0	0.418033	0	.	.	none	.	SMU1	29	.	NM_018225	exon3	c.A249G	p.E83E	TATCAATTCCAGA	.	PASS	Atlas-SNP
IP6K2	51447	hgsc.bcm.edu	37	3	48727112	48727112	+	Silent	SNP	G	G	A	rs4858798	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	129	132	0	1	0	G|0.348;A|0.652	0.652	strong	.	IP6K2	63	.	NM_016291	exon5	c.C639T	p.Y213Y	CACCTCGTAGCGG	.	PASS	Atlas-SNP
COG6	57511	hgsc.bcm.edu	37	13	40229957	40229957	+	Missense_Mutation	SNP	T	T	A	rs3812883	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	56	73	0	0.608696	0	T|0.567;A|0.433	0.433	strong	.	COG6	49	.	NM_001145079	exon1	c.T94A	p.C32S	ACGACCTGCAACC	.	PASS	Atlas-SNP
ZP1	22917	hgsc.bcm.edu	37	11	60638461	60638461	+	Silent	SNP	C	C	T	rs10897122	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	97	98	0	1	0	C|0.776;N|0.000	.	strong	.	ZP1	69	.	NM_207341	exon5	c.C858T	p.F286F	CTACTTCGTCCTC	.	PASS	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	37	1	19615023	19615023	+	Silent	SNP	G	G	A	rs115242113	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	247	51	161	0	0.206478	0	G|0.985;A|0.015	0.015	strong	AKR7A3,NS,lymphoid_neoplasm,0,1	AKR7A3	30	1	NM_012067	exon1	c.C181T	p.L61L	GCCCCAGGCCGCC	.	PASS	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	37	2	97297114	97297114	+	Silent	SNP	G	G	A	rs35809433	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	120	215	0	0.566038	0	G|0.991;A|0.009	0.009	strong	.	.	.	.	NM_001115016	exon3	c.C321T	p.V107V	AAAGATGACATGC	.	PASS	Atlas-SNP
AURKAIP1	54998	hgsc.bcm.edu	37	1	1309803	1309803	+	Silent	SNP	G	G	A	rs9554		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	9	11	0	0.9	0	.	.	weak	.	AURKAIP1	12	.	NM_001127230	exon3	c.C75T	p.V25V	TCCAGAGACGGGC	.	PASS	Atlas-SNP
STRA6	64220	hgsc.bcm.edu	37	15	74488424	74488424	+	Silent	SNP	G	G	A	rs11857410	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	30	72	0	0.491803	0	G|0.878;A|0.122	0.122	strong	.	STRA6	66	.	NM_001199042	exon5	c.C448T	p.L150L	AGCTCAGGAGGAC	.	PASS	Atlas-SNP
KRTAP5-1	387264	hgsc.bcm.edu	37	11	1605957	1605957	+	Missense_Mutation	SNP	C	C	T	rs151275365	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	57	142	0	0.349693	0	C|0.989;T|0.011	0.011	strong	.	KRTAP5-1	74	.	NM_001005922	exon1	c.G523A	p.G175R	AGCCCCCCTTGGA	.	PASS	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	37	1	34208948	34208948	+	Silent	SNP	G	G	A	rs117716479	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	62	108	0	0.462687	0	G|0.986;A|0.014	0.014	strong	CSMD2,rectum,carcinoma,-1,1	CSMD2	946	1	NM_052896	exon14	c.C1986T	p.H662H	GGCCACGTGGCCA	.	PASS	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	37	19	55748092	55748092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	3	114	0	0.0215827	0	.	.	none	PPP6R1_ENST00000412770,NS,carcinoma,0,1	PPP6R1	63	1	NM_014931	exon17	c.G1907A	p.G636E	GACTCCCCTGAGC	.	scavenged	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140574209	140574209	+	Missense_Mutation	SNP	C	C	G	rs138601077	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	32	28	0	0.561404	0	C|0.991;G|0.009	0.009	strong	.	PCDHB10	177	.	NM_018930	exon1	c.C2084G	p.A695G	TGGTGGCGTTGGC	.	PASS	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	37	12	43769228	43769228	+	Silent	SNP	A	A	C	rs10506226	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	152	162	0	0.993464	0	A|0.790;C|0.210	0.210	strong	.	ADAMTS20	635	.	NM_025003	exon36	c.T5400G	p.T1800T	GAAAACAGTGTAT	.	PASS	Atlas-SNP
ALDH18A1	5832	hgsc.bcm.edu	37	10	97388162	97388162	+	Missense_Mutation	SNP	G	G	A	rs2275272	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	33	87	0	0.515625	0	G|0.912;A|0.088	0.088	strong	.	ALDH18A1	63	.	NM_002860	exon8	c.C896T	p.T299I	GACTTGGTTCCAA	.	PASS	Atlas-SNP
SHD	56961	hgsc.bcm.edu	37	19	4280186	4280186	+	Silent	SNP	C	C	T	rs10419363	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	108	99	0	0.964286	0	C|0.681;N|0.000	.	strong	.	SHD	33	.	NM_020209	exon1	c.C126T	p.F42F	GGACTTCGAGGAC	.	PASS	Atlas-SNP
SLC2A9	56606	hgsc.bcm.edu	37	4	10027542	10027542	+	Missense_Mutation	SNP	C	C	T	rs6820230	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	64	140	0	0.5	0	C|0.682;T|0.318	0.318	strong	SLC2A9,NS,carcinoma,+2,1	SLC2A9	158	1	NM_001001290	exon2	c.G49A	p.A17T	TTTTCGCTGAATC	.	PASS	Atlas-SNP
HIST1H3C	8352	hgsc.bcm.edu	37	6	26045737	26045737	+	Silent	SNP	C	C	G	rs3752418	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	38	91	0	0.463415	0	C|0.881;G|0.119	0.119	strong	.	HIST1H3C	34	.	NM_003531	exon1	c.C99G	p.T33T	GGCCACCGGTGGC	.	PASS	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	37	11	68840399	68840399	+	Missense_Mutation	SNP	G	G	A	rs61746574	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	37	109	0	0.560606	0	G|0.896;A|0.104	0.104	strong	.	TPCN2	63	.	NM_139075	exon13	c.G1160A	p.G387D	CCTATGGCAGTGT	.	PASS	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	37	1	171753039	171753039	+	Missense_Mutation	SNP	A	A	G	rs2232816	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	74	188	0	0.420455	0	A|0.685;G|0.315	0.315	strong	.	METTL13	67	.	NM_015935	exon2	c.A313G	p.M105V	ATGGACATGACGC	.	PASS	Atlas-SNP
C1QTNF6	114904	hgsc.bcm.edu	37	22	37581485	37581485	+	Missense_Mutation	SNP	C	C	A	rs229527	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	21	22	0	0.488372	0	T|0.004;G|0.002	.	strong	.	C1QTNF6	32	.	NM_182486	exon2	c.G62T	p.G21V	GCTGTCCCCATGG	.	PASS	Atlas-SNP
PITX3	5309	hgsc.bcm.edu	37	10	103991518	103991518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	2	62	0	0.0307692	0	.	.	none	PITX3,colon,carcinoma,+2,1	PITX3	9	1	NM_005029	exon3	c.G148A	p.G50S	AGCCGCCGGGCAG	.	scavenged	Atlas-SNP
ALS2CR11	151254	hgsc.bcm.edu	37	2	202430584	202430584	+	Missense_Mutation	SNP	G	G	A	rs73991652	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	22	50	0	0.366667	0	G|0.948;A|0.052	0.052	strong	.	ALS2CR11	194	.	NM_001168217	exon9	c.C845T	p.T282I	TGTGGTGTAATAA	.	PASS	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	37	11	5068137	5068137	+	Missense_Mutation	SNP	G	G	A	rs2500017	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	137	194	0	0.518939	0	G|0.493;A|0.507	0.507	strong	.	OR52J3	77	.	NM_001001916	exon1	c.G382A	p.V128I	GTGGCCGTCTGTG	.	PASS	Atlas-SNP
SLK	9748	hgsc.bcm.edu	37	10	105763026	105763026	+	Missense_Mutation	SNP	C	C	T	rs3740469	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	36	81	0	0.444444	0	C|0.822;T|0.178	0.178	strong	.	SLK	107	.	NM_014720	exon9	c.C2090T	p.T697I	AAGTTACTGTAGT	.	PASS	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	37	1	166958710	166958710	+	Missense_Mutation	SNP	T	T	G	rs11578336	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	29	68	0	0.467742	0	T|0.743;G|0.257	0.257	strong	MAEL,NS,carcinoma,0,1	MAEL	95	1	NM_032858	exon1	c.T121G	p.S41A	TGCTCCTCAGACT	.	PASS	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	37	12	988894	988894	+	Silent	SNP	G	G	A	rs9804992	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	125	132	0	1	0	G|0.860;A|0.140	0.140	strong	WNK1,NS,carcinoma,0,2	WNK1	403	2	NM_018979	exon11	c.G2529A	p.Q843Q	CTCTCAGATTCCC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276282	152276282	+	Missense_Mutation	SNP	C	C	G	rs76133835	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	371	48	340	1	0.12938	0.00294118	C|0.500;G|0.500	0.500	weak	FLG,extremity,malignant_melanoma,0,1	FLG	900	1	NM_002016	exon3	c.G11080C	p.E3694Q	TGGACTCTTGGTG	.	scavenged	Atlas-SNP
HIST1H2BE	8344	hgsc.bcm.edu	37	6	26184102	26184102	+	Missense_Mutation	SNP	G	G	A	rs7766641	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	69	152	0	0.469388	0	G|0.744;A|0.256	0.256	strong	.	HIST1H2BE	10	.	NM_003523	exon1	c.G79A	p.G27S	AAGGACGGCAAGA	.	PASS	Atlas-SNP
TF	7018	hgsc.bcm.edu	37	3	133486958	133486958	+	Silent	SNP	G	G	C	rs8649	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	38	96	0	0.408602	0	G|0.752;C|0.248	0.248	strong	.	TF	116	.	NM_001063	exon13	c.G1572C	p.L524L	AAACCTGTGTGAA	.	PASS	Atlas-SNP
LMNB2	84823	hgsc.bcm.edu	37	19	2433890	2433890	+	Silent	SNP	A	A	G	rs11084940	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	38	51	0	0.513514	0	A|0.401;G|0.599	0.599	strong	LMNB2,NS,carcinoma,0,1	LMNB2	40	1	NM_032737	exon8	c.T1416C	p.G472G	GACGCTACCCGAG	.	PASS	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	37	21	28216674	28216674	+	Silent	SNP	G	G	C	rs409630	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	14	33	0	0.538462	0	G|0.825;C|0.175	0.175	strong	.	ADAMTS1	131	.	NM_006988	exon1	c.C600G	p.V200V	GTCCACGACCCCG	.	PASS	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	37	9	140777299	140777299	+	Missense_Mutation	SNP	G	G	T	rs71238527	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	33	147	0	0.230769	0	G|0.947;T|0.053	0.053	strong	.	CACNA1B	266	.	NM_001243812	exon3	c.G494T	p.G165V	GGAACGGCTGGAA	.	PASS	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	37	16	16138322	16138322	+	Silent	SNP	T	T	C	rs246221	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	69	143	0	0.565574	0	T|0.563;C|0.437	0.437	strong	.	ABCC1	156	.	NM_004996	exon8	c.T825C	p.V275V	GAAGGTTGTGTAC	.	PASS	Atlas-SNP
RGCC	28984	hgsc.bcm.edu	37	13	42032572	42032572	+	Silent	SNP	T	T	C	rs7136	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	17	36	0	0.447368	0	T|0.426;C|0.574	0.574	strong	.	.	.	.	NM_014059	exon2	c.T201C	p.S67S	CGCCAGTGTCAGC	.	PASS	Atlas-SNP
KIFC1	3833	hgsc.bcm.edu	37	6	33373341	33373341	+	Missense_Mutation	SNP	C	C	T	rs7770412	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	9	24	0	0.375	0	C|0.993;T|0.007	0.007	strong	.	KIFC1	47	.	NM_002263	exon7	c.C1469T	p.A490V	GCCGTGCAGGGCC	.	PASS	Atlas-SNP
LRRC8B	23507	hgsc.bcm.edu	37	1	90049577	90049577	+	Silent	SNP	C	C	T	rs140158391		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	4	50	0	0.0625	0	C|1.000;T|0.000	0.000	weak	.	LRRC8B	49	.	NM_015350	exon5	c.C1368T	p.P456P	GCTGCCCTCTGCA	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152331240	152331240	+	Missense_Mutation	SNP	G	G	A	rs3818831	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	48	114	0	0.484848	0	G|0.706;A|0.294	0.294	strong	.	FLG2	431	.	NM_001014342	exon2	c.C121T	p.L41F	GATGAAGCTCTTT	.	PASS	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	37	11	4945233	4945233	+	Missense_Mutation	SNP	C	C	T	rs35264256	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	32	51	0	0.484848	0	C|0.912;T|0.088	0.088	strong	.	OR51G1	74	.	NM_001005237	exon1	c.G337A	p.E113K	ATGACTCCATTGA	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183105705	183105705	+	Silent	SNP	G	G	A	rs20561	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	50	141	0	0.420168	0	G|0.636;A|0.364	0.364	strong	.	LAMC1	176	.	NM_002293	exon25	c.G4299A	p.A1433A	GATCGCGAGCGCT	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537288	88537288	+	Silent	SNP	C	C	T	rs368208607		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	9	217	0	0.0514286	0	.	.	weak	.	DSPP	174	.	NM_014208	exon5	c.C3474T	p.D1158D	CAGCGACAGCAGT	.	PASS	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	37	2	97271090	97271090	+	Missense_Mutation	SNP	G	G	A	rs35715176	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	86	175	0	0.436548	0	G|0.949;A|0.051	0.051	strong	.	.	.	.	NM_001115016	exon15	c.C1900T	p.P634S	CACAAGGCCCTCC	.	PASS	Atlas-SNP
SPATA22	84690	hgsc.bcm.edu	37	17	3352331	3352331	+	Missense_Mutation	SNP	C	C	T	rs1488690	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	121	232	0	0.535398	0	C|0.767;T|0.233	0.233	strong	.	SPATA22	49	.	NM_032598	exon6	c.G442A	p.V148M	AACTCACTGGACA	.	PASS	Atlas-SNP
C7orf29	113763	hgsc.bcm.edu	37	7	150027802	150027802	+	Silent	SNP	C	C	T	rs75555338	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	53	82	0	0.477477	0	C|0.990;T|0.010	0.010	strong	.	C7orf29	18	.	NM_138434	exon1	c.C309T	p.L103L	AGTCCTCGTGTAC	.	PASS	Atlas-SNP
C9orf43	257169	hgsc.bcm.edu	37	9	116181419	116181419	+	Missense_Mutation	SNP	A	A	G	rs113088354	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	32	89	0	0.450704	0	A|0.986;G|0.014	0.014	strong	.	C9orf43	49	.	NM_152786	exon4	c.A319G	p.I107V	AGTTTGATCAACT	.	PASS	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	37	3	361493	361493	+	Missense_Mutation	SNP	G	G	A	rs142251617	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	18	43	0	0.439024	0	G|0.990;A|0.010	0.010	strong	.	CHL1	242	.	NM_001253388	exon1	c.G34A	p.V12I	CTAATCGTATATC	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114468966	114468966	+	Missense_Mutation	SNP	A	A	C	rs7036568	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	45	90	0	0.46875	0	A|0.750;C|0.250	0.250	strong	C9orf84_ENST00000374287,colon,carcinoma,0,2	C9orf84	207	2	NM_173521	exon18	c.T2427G	p.N809K	TGAGAAATTACTC	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133489601	133489601	+	Silent	SNP	A	A	G	rs56284623	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	56	114	0	0.486957	0	A|0.822;G|0.178	0.178	strong	.	NCKAP5	322	.	NM_207363	exon17	c.T5152C	p.L1718L	TGTCCAATGTTCT	.	PASS	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	37	19	21719401	21719401	+	Silent	SNP	T	T	C	rs35782355	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	17	46	0	0.361702	0	T|0.444;C|0.556	0.556	strong	.	ZNF429	338	.	NM_001001415	exon4	c.T546C	p.F182F	ATCATTTTGCATG	.	PASS	Atlas-SNP
CDON	50937	hgsc.bcm.edu	37	11	125891269	125891269	+	Missense_Mutation	SNP	C	C	T	rs3740912	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	61	156	0	0.432624	0	C|0.401;T|0.599	0.599	strong	CDON,NS,carcinoma,0,1	CDON	137	1	NM_016952	exon3	c.G223A	p.V75I	TCTTAACATGTTC	.	PASS	Atlas-SNP
DDX27	55661	hgsc.bcm.edu	37	20	47859217	47859217	+	Missense_Mutation	SNP	G	G	A	rs1130146	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	51	118	0	0.418033	0	G|0.716;A|0.284	0.284	strong	.	DDX27	74	.	NM_017895	exon19	c.G2296A	p.G766S	CGAGCTGGGTAGG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1080391	1080391	+	Missense_Mutation	SNP	G	G	A	rs41521547	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	55	113	0	0.518868	0	G|0.947;A|0.053	0.053	strong	.	MUC2	614	.	NM_002457	exon8	c.G1111A	p.E371K	GACTGCGAGCAGT	.	PASS	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	37	1	208390086	208390086	+	Silent	SNP	G	G	C	rs1664227	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	16	39	0	0.5	0	G|0.664;C|0.336	0.336	strong	.	PLXNA2	178	.	NM_025179	exon2	c.C1182G	p.T394T	CGCCTTGGTGCAC	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2408486	2408486	+	Silent	SNP	T	T	C	rs62120712	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	51	91	0	0.51	0	T|0.901;C|0.099	0.099	strong	.	TMPRSS9	79	.	NM_182973	exon7	c.T873C	p.F291F	CGACTTTGACGTG	.	PASS	Atlas-SNP
TYW1	55253	hgsc.bcm.edu	37	7	66648199	66648199	+	Silent	SNP	G	G	A	rs7776775	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	46	80	0	0.46	0	.	.	weak	.	TYW1	71	.	NM_018264	exon14	c.G1785A	p.G595G	CCTGGGGAATCCT	.	PASS	Atlas-SNP
ETFB	2109	hgsc.bcm.edu	37	19	51857738	51857738	+	Missense_Mutation	SNP	G	G	A	rs79338777	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	46	69	0	0.479167	0	G|0.937;A|0.063	0.063	strong	.	ETFB	46	.	NM_001014763	exon1	c.C155T	p.P52L	GGCAGGGGCAGGT	.	PASS	Atlas-SNP
JAGN1	84522	hgsc.bcm.edu	37	3	9934753	9934753	+	Missense_Mutation	SNP	A	A	G	rs35365817	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	556	267	505	0	0.480216	0	A|0.979;G|0.021	0.021	strong	.	JAGN1	18	.	NM_032492	exon2	c.A244G	p.I82V	CTGAGCATTTTGC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507129	195507129	+	Silent	SNP	G	G	T	rs74201433	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	30	163	0	0.184049	0	G|0.910;T|0.090	0.090	strong	.	MUC4	1505	.	NM_018406	exon2	c.C11322A	p.A3774A	AGGCGTGGCGTGA	.	PASS	Atlas-SNP
OR2T1	26696	hgsc.bcm.edu	37	1	248569369	248569369	+	Missense_Mutation	SNP	A	A	G	rs28599722	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	141	141	0	0.992958	0	A|0.624;G|0.376	0.376	strong	.	OR2T1	89	.	NM_030904	exon1	c.A74G	p.H25R	ATTCACATGTTGT	.	PASS	Atlas-SNP
QRFP	347148	hgsc.bcm.edu	37	9	133768827	133768827	+	Silent	SNP	G	G	A	rs139926605	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	40	68	0	0.506329	0	G|0.998;A|0.002	0.002	strong	.	QRFP	14	.	NM_198180	exon1	c.C399T	p.F133F	CCGACCGAAGCGG	.	PASS	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	37	7	24703298	24703298	+	Silent	SNP	G	G	A	rs1053962	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	71	78	0	1	0	A|0.556;C|0.001	0.556	strong	.	MPP6	62	.	NM_016447	exon7	c.G741A	p.E247E	AGGAGAGATTCTT	.	PASS	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	37	19	17392894	17392894	+	Missense_Mutation	SNP	G	G	A	rs8100241	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	9	9	10	0	1	0	G|0.574;A|0.426	0.426	strong	FLJ39369,NS,carcinoma,0,4	ANKLE1	27	4	NM_152363	exon2	c.G91A	p.A31T	TGCGGCGCGGACC	.	PASS	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111985107	111985107	+	Missense_Mutation	SNP	T	T	C	rs9872691	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	107	243	0	0.493088	0	T|0.705;C|0.295	0.295	strong	.	.	.	.	NM_183061	exon8	c.A856G	p.I286V	CTTCAATTGCTGC	.	PASS	Atlas-SNP
CPNE1	8904	hgsc.bcm.edu	37	20	34220755	34220755	+	Missense_Mutation	SNP	C	C	T	rs11543244	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	56	144	0	0.411765	0	T|0.057;C|0.943	0.057	strong	.	CPNE1	44	.	NM_003915	exon2	c.G106A	p.V36I	AAAGGACGCAGAG	.	PASS	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	37	2	191301908	191301908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	3	201	0	0.0122449	0	.	.	none	MFSD6,colon,carcinoma,0,1	MFSD6	58	1	NM_017694	exon3	c.G1153A	p.V385I	TTGATCGTTGCCA	.	scavenged	Atlas-SNP
IFT74	80173	hgsc.bcm.edu	37	9	26978170	26978170	+	Missense_Mutation	SNP	A	A	G	rs10812505	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	52	105	0	0.504854	0	A|0.836;G|0.164	0.164	strong	.	IFT74	46	.	NM_001099222	exon3	c.A165G	p.I55M	TCCCATAGGGACT	.	PASS	Atlas-SNP
GPR4	2828	hgsc.bcm.edu	37	19	46094597	46094597	+	Silent	SNP	G	G	A	rs3745820	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	39	89	0	0.428571	0	G|0.820;A|0.180	0.180	strong	.	GPR4	54	.	NM_005282	exon2	c.C528T	p.G176G	CACCCAGCCTTCC	.	PASS	Atlas-SNP
XAB2	56949	hgsc.bcm.edu	37	19	7685843	7685843	+	Silent	SNP	G	G	A	rs794078	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	24	51	0	0.413793	0	A|0.158;C|0.007	0.158	strong	XAB2,NS,carcinoma,0,1	XAB2	69	1	NM_020196	exon14	c.C1860T	p.T620T	GGCCCTGGTGGCA	.	PASS	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	37	19	33579128	33579128	+	Silent	SNP	T	T	C	rs7259333	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	51	124	0	0.459459	0	T|0.549;C|0.451	0.451	strong	.	GPATCH1	79	.	NM_018025	exon2	c.T162C	p.S54S	CTTTAGTGGAGGT	.	PASS	Atlas-SNP
PSAPL1	768239	hgsc.bcm.edu	37	4	7435058	7435058	+	Missense_Mutation	SNP	C	C	T	rs60816800	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	89	94	0	1	0	C|0.893;T|0.107	0.107	strong	.	PSAPL1	51	.	NM_001085382	exon1	c.G1549A	p.A517T	CCCCAGCGTGGAG	.	PASS	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	37	6	75848181	75848181	+	Missense_Mutation	SNP	A	A	G	rs240736	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	137	90	0	1	0	A|0.734;G|0.266	0.266	strong	.	COL12A1	385	.	NM_004370	exon29	c.T5213C	p.I1738T	CTGCCAATCAGGT	.	PASS	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	37	22	38323507	38323507	+	Missense_Mutation	SNP	G	G	T	rs9610875	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	30	76	0	0.508475	0	G|0.829;T|0.171	0.171	strong	.	MICALL1	53	.	NM_033386	exon9	c.G1555T	p.A519S	GAGAGCGCCAGCC	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225565073	225565073	+	Silent	SNP	C	C	T	rs3856155	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	319	310	267	1	0.971787	0.00374532	C|0.457;T|0.543	0.543	strong	.	DNAH14	300	.	NM_001373	exon77	c.C12345T	p.G4115G	CCAGGGCGAAAAG	.	PASS	Atlas-SNP
KRT28	162605	hgsc.bcm.edu	37	17	38950272	38950272	+	Silent	SNP	T	T	C	rs2250671	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	69	135	0	0.530769	0	T|0.373;C|0.627	0.627	strong	.	KRT28	65	.	NM_181535	exon6	c.A1005G	p.T335T	GGTCTCTGTCAAG	.	PASS	Atlas-SNP
VSIG4	11326	hgsc.bcm.edu	37	X	65253454	65253454	+	Missense_Mutation	SNP	C	C	A	rs41306131	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	134	139	1	0.992593	0.00719424	C|0.994;A|0.006	0.006	strong	.	VSIG4	54	.	NM_001100431	exon2	c.G274T	p.V92F	CTGGAACCTTGTG	.	PASS	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	37	11	19970501	19970501	+	Silent	SNP	T	T	C	rs11025335	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	60	139	0	0.46875	0	T|0.792;C|0.208	0.208	strong	.	NAV2	255	.	NM_001244963	exon11	c.T2589C	p.H863H	CTGCCATGTGGAC	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579182	55579182	+	Silent	SNP	A	A	G	rs139708815	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	13	192	0	0.0687831	0	A|1.000;G|0.000	0.000	strong	OR5L1,NS,carcinoma,0,3	OR5L1	145	3	NM_001004738	exon1	c.A240G	p.K80K	GCCAAAAATGTTG	.	scavenged	Atlas-SNP
FAM63A	55793	hgsc.bcm.edu	37	1	150974971	150974971	+	Missense_Mutation	SNP	T	T	A	rs41310885	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	44	84	0	0.511628	0	T|0.919;A|0.081	0.081	strong	.	FAM63A	42	.	NM_001163258	exon3	c.A267T	p.R89S	AGCATCTCTTGCA	.	PASS	Atlas-SNP
CPT1C	126129	hgsc.bcm.edu	37	19	50212024	50212024	+	Silent	SNP	C	C	T	rs61747405	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	63	91	0	0.583333	0	C|0.978;T|0.022	0.022	strong	.	CPT1C	93	.	NM_001199752	exon14	c.C1494T	p.D498D	AACAGACGGCCAC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105414629	105414629	+	Missense_Mutation	SNP	G	G	A	rs72702027	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	177	185	0	0.988827	0	G|0.479;A|0.521	0.521	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C7159T	p.P2387S	CCTCTGGGAGTTT	.	PASS	Atlas-SNP
ZCCHC4	29063	hgsc.bcm.edu	37	4	25314478	25314478	+	Missense_Mutation	SNP	G	G	C	rs201763036	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	32	95	0	0.385542	0	G|0.999;C|0.001	0.001	strong	.	ZCCHC4	34	.	NM_024936	exon1	c.G47C	p.S16T	AGGGCAGCGCAGG	.	PASS	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	37	1	113239382	113239382	+	Silent	SNP	G	G	A	rs17030651	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	60	109	0	0.465116	0	G|0.803;A|0.197	0.197	strong	MOV10,NS,carcinoma,+2,1	MOV10	74	1	NM_020963	exon14	c.G2112A	p.E704E	GCTGGAGCGGCTG	.	PASS	Atlas-SNP
TAS2R31	259290	hgsc.bcm.edu	37	12	11183191	11183191	+	Silent	SNP	T	T	C	rs116737741	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	340	161	259	0	0.473529	0	T|0.912;C|0.088	0.088	strong	.	TAS2R31	24	.	NM_176885	exon1	c.A744G	p.S248S	CCAAACTGATATC	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82786194	82786194	+	Silent	SNP	T	T	C	rs12332199	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	44	82	0	0.571429	0	T|0.613;C|0.387	0.387	strong	.	VCAN	498	.	NM_004385	exon3	c.T348C	p.T116T	CCTCACTGTGGTC	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24421950	24421950	+	Missense_Mutation	SNP	C	C	G	rs4319261	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	61	93	0	0.535088	0	C|0.542;G|0.458	0.458	strong	.	MYOM3	131	.	NM_152372	exon8	c.G772C	p.D258H	CTGAATCGAAGCC	.	PASS	Atlas-SNP
USP51	158880	hgsc.bcm.edu	37	X	55514818	55514818	+	Silent	SNP	C	C	T	rs3126255	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	91	68	0	1	0	C|0.528;T|0.472	0.472	strong	.	USP51	71	.	NM_201286	exon2	c.G555A	p.E185E	CTCGACCTCCAGC	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44073973	44073973	+	Silent	SNP	T	T	C	rs17652121	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	195	205	2	1	0.0097561	T|0.860;C|0.140	0.140	strong	.	MAPT	135	.	NM_001123066	exon11	c.T1770C	p.N590N	GAAGAATGTCAAG	.	PASS	Atlas-SNP
STOM	2040	hgsc.bcm.edu	37	9	124103523	124103523	+	Missense_Mutation	SNP	A	A	G	rs41273438	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	82	166	0	0.506173	0	A|0.971;G|0.029	0.029	strong	STOM,NS,carcinoma,-1,1	STOM	15	1	NM_004099	exon7	c.T824C	p.M275T	TGCAGCATATCTA	.	PASS	Atlas-SNP
SLC23A2	9962	hgsc.bcm.edu	37	20	4880308	4880308	+	Silent	SNP	G	G	A	rs1776964	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	123	0	1	0	G|0.545;A|0.455	0.455	strong	.	SLC23A2	62	.	NM_203327	exon6	c.C375T	p.A125A	GGCATCGGCCAAC	.	PASS	Atlas-SNP
TAS2R50	259296	hgsc.bcm.edu	37	12	11138935	11138935	+	Silent	SNP	T	T	C	rs66679979	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	53	137	0	0.46087	0	T|0.870;C|0.130	0.130	strong	.	TAS2R50	37	.	NM_176890	exon1	c.A525G	p.S175S	CAAATATGAAAGA	.	PASS	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57762401	57762401	+	Missense_Mutation	SNP	T	T	C	rs2923147	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	117	196	0	0.502146	0	T|0.627;C|0.373	0.373	strong	CCDC135,NS,carcinoma,0,1	CCDC135	97	1	NM_032269	exon16	c.T2296C	p.C766R	CTAACATGCTGGC	.	PASS	Atlas-SNP
PPFIBP1	8496	hgsc.bcm.edu	37	12	27788021	27788021	+	Silent	SNP	G	G	A	rs2075378	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	70	101	0	0.546875	0	G|0.671;A|0.329	0.329	strong	.	PPFIBP1	153	.	NM_003622	exon4	c.G243A	p.T81T	AGAAACGCTTGTT	.	PASS	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	37	2	179914649	179914649	+	Missense_Mutation	SNP	G	G	A	rs115554157	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	76	121	0	0.531469	0	G|0.992;A|0.008	0.008	strong	.	CCDC141	362	.	NM_173648	exon1	c.C20T	p.P7L	ACACTAGGACTTC	.	PASS	Atlas-SNP
NSUN4	387338	hgsc.bcm.edu	37	1	46827485	46827485	+	Silent	SNP	C	C	T	rs1053624	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	255	125	228	0	0.490196	0	C|0.804;T|0.196	0.196	strong	.	NSUN4	26	.	NM_199044	exon6	c.C1122T	p.P374P	TGGCCCCATGTAC	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152615200	152615200	+	Silent	SNP	G	G	A	rs12664753	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	65	130	0	0.496183	0	G|0.856;A|0.144	0.144	strong	.	SYNE1	3227	.	NM_182961	exon94	c.C17745T	p.H5915H	GCTGGGGTGAATT	.	PASS	Atlas-SNP
NBPF4	148545	hgsc.bcm.edu	37	1	108769307	108769307	+	Silent	SNP	G	G	A	rs2582071		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	22	727	0	0.6875	0	G|0.500;A|0.500	0.500	weak	NBPF4,NS,carcinoma,0,2	NBPF4	4	2	NM_001143989	exon14	c.C1869T	p.S623S	CTCTGCGCTCTCA	.	scavenged	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130098349	130098349	+	Silent	SNP	G	G	A	rs16845861	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	59	109	0	0.479675	0	G|0.632;A|0.368	0.368	strong	COL6A5,colon,carcinoma,+1,1	COL6A5	205	1	NM_153264	exon4	c.G756A	p.R252R	TTTAAGGCATCTT	.	PASS	Atlas-SNP
KCNK10	54207	hgsc.bcm.edu	37	14	88651962	88651962	+	Missense_Mutation	SNP	C	C	T	rs17762463	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	274	145	243	1	0.529197	0.00411523	C|0.833;T|0.167	0.167	strong	.	KCNK10	273	.	NM_138318	exon7	c.G1549A	p.A517T	ACTCAGCGTGCTG	.	PASS	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53207628	53207628	+	Missense_Mutation	SNP	G	G	A	rs2638525	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	19	52	0	0.413043	0	G|0.795;A|0.205	0.205	strong	.	KRT4	110	.	NM_002272	exon1	c.C215T	p.A72V	AAGCAGGCACCTT	.	PASS	Atlas-SNP
PKP1	5317	hgsc.bcm.edu	37	1	201282573	201282573	+	Missense_Mutation	SNP	A	A	G	rs35507614	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	140	281	1	0.484429	0.00355872	A|0.887;G|0.113	0.113	strong	.	PKP1	127	.	NM_001005337	exon3	c.A586G	p.I196V	AAGGCCATAAAGA	.	PASS	Atlas-SNP
ZNF565	147929	hgsc.bcm.edu	37	19	36674305	36674305	+	Missense_Mutation	SNP	A	A	G	rs4805162	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	106	104	0	1	0	A|0.373;G|0.627	0.627	strong	.	ZNF565	46	.	NM_001042474	exon5	c.T563C	p.I188T	GTGTGAATTTTCT	.	PASS	Atlas-SNP
TFAP4	7023	hgsc.bcm.edu	37	16	4310468	4310468	+	Missense_Mutation	SNP	C	C	G	rs251732	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	136	143	0	0.992701	0	C|0.381;G|0.619	0.619	strong	TFAP4,colon,carcinoma,0,1	TFAP4	31	1	NM_003223	exon5	c.G654C	p.Q218H	CCGCAGCTGCTGC	.	PASS	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	37	2	182322938	182322938	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	3	216	0	0.012605	0	.	.	none	ITGA4,NS,carcinoma,0,1	ITGA4	142	1	NM_000885	exon2	c.G213A	p.A71A	GGGTGCGCCCACT	.	scavenged	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	37	X	2945477	2945477	+	Missense_Mutation	SNP	C	C	T	rs61751925	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	103	75	0	1	0	C|0.940;T|0.060	0.060	strong	.	ARSH	72	.	NM_001011719	exon7	c.C1160T	p.T387M	ATCCGACGCTGTC	.	PASS	Atlas-SNP
POLH	5429	hgsc.bcm.edu	37	6	43581586	43581586	+	Silent	SNP	G	G	A	rs3734690	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	51	105	1	0.447368	0.00952381	G|0.939;A|0.061	0.061	strong	POLH,NS,carcinoma,+1,1	POLH	54	1	NM_006502	exon11	c.G1434A	p.T478T	AACCACGTCTCTG	.	scavenged	Atlas-SNP
GLRX3	10539	hgsc.bcm.edu	37	10	131934747	131934747	+	Missense_Mutation	SNP	G	G	C	rs13991	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	7	34	0	0.28	0	G|0.849;C|0.151	0.151	strong	TXNL2,NS,carcinoma,0,2	GLRX3	39	2	NM_006541	exon1	c.G63C	p.Q21H	CGGGCAGTTTGAG	.	PASS	Atlas-SNP
SLC47A2	146802	hgsc.bcm.edu	37	17	19607432	19607432	+	Silent	SNP	C	C	T	rs34169093	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	24	59	0	0.55814	0	C|0.935;T|0.065	0.065	strong	.	SLC47A2	61	.	NM_152908	exon11	c.G1077A	p.A359A	AGTATCCGCAGCC	.	PASS	Atlas-SNP
OR9Q2	219957	hgsc.bcm.edu	37	11	57958775	57958775	+	Silent	SNP	C	C	T	rs7120468	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	73	141	0	0.514085	0	C|0.651;T|0.349	0.349	strong	OR9Q2,NS,carcinoma,0,1	OR9Q2	78	1	NM_001005283	exon1	c.C813T	p.D271D	GGGAGACCGAGTG	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201262	24201262	+	Silent	SNP	A	A	G	rs2502993	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	72	128	0	0.48	0	A|0.359;G|0.641	0.641	strong	CNR2_ENST00000374472,NS,carcinoma,-2,3	CNR2	78	3	NM_001841	exon2	c.T846C	p.A282A	GCAGAAAGCAAAG	.	PASS	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	37	3	52524743	52524743	+	Silent	SNP	C	C	T	rs377533055		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	2	177	0	0.0105263	0	.	.	weak	NISCH,face,carcinoma,+1,3	NISCH	97	3	NM_007184	exon19	c.C3636T	p.T1212T	AAACACCGACTAC	.	scavenged	Atlas-SNP
DYNC1LI1	51143	hgsc.bcm.edu	37	3	32586521	32586521	+	Missense_Mutation	SNP	C	C	T	rs138677120	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	67	116	0	0.527559	0	C|0.989;T|0.011	0.011	strong	.	DYNC1LI1	23	.	NM_016141	exon4	c.G415A	p.V139I	GAGATACGGCATC	.	PASS	Atlas-SNP
EPHA8	2046	hgsc.bcm.edu	37	1	22927408	22927408	+	Silent	SNP	G	G	A	rs56055011	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	55	88	0	0.447154	0	G|0.947;A|0.053	0.053	strong	EPHA8,NS,carcinoma,0,1	EPHA8	221	1	NM_020526	exon15	c.G2556A	p.E852E	TGTGGAGGAGGGG	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39464558	39464558	+	Silent	SNP	G	G	A	rs72828117	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	48	86	0	0.571429	0	G|0.900;A|0.100	0.100	strong	.	KRTAP16-1	12	.	NM_001146182	exon1	c.C948T	p.P316P	GGGGCTGGGCTCA	.	PASS	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	37	22	45258343	45258343	+	Silent	SNP	C	C	T	rs41278889	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	31	82	0	0.462687	0	C|0.995;T|0.005	0.005	strong	.	PRR5-ARHGAP8	53	.	NM_181334	exon15	c.C1536T	p.H512H	GGAGCACGGCCTG	.	PASS	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	37	1	208391254	208391254	+	Missense_Mutation	SNP	C	C	T	rs2782948	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	16	40	0	0.533333	0	C|0.660;T|0.340	0.340	strong	PLXNA2,NS,carcinoma,0,1	PLXNA2	178	1	NM_025179	exon2	c.G14A	p.R5Q	CAGGGCCGCCTCT	.	scavenged	Atlas-SNP
CYB5R2	51700	hgsc.bcm.edu	37	11	7686674	7686674	+	Silent	SNP	T	T	C	rs13854	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	62	131	0	0.496	0	T|0.208;C|0.792	0.792	strong	.	CYB5R2	23	.	NM_016229	exon9	c.A762G	p.L254L	CTGGATTAGTGGT	.	PASS	Atlas-SNP
ZNF133	7692	hgsc.bcm.edu	37	20	18296473	18296473	+	Silent	SNP	C	C	T	rs1050475	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	30	65	0	0.410959	0	C|0.920;T|0.080	0.080	strong	.	ZNF133	63	.	NM_001083330	exon4	c.C975T	p.Y325Y	GCCTTACGTGTGC	.	PASS	Atlas-SNP
GDPD4	220032	hgsc.bcm.edu	37	11	76954833	76954833	+	Missense_Mutation	SNP	G	G	A	rs11237146	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	35	59	0	0.522388	0	G|0.770;A|0.229	0.229	strong	.	GDPD4	49	.	NM_182833	exon12	c.C1147T	p.H383Y	CCACATGCTGAAA	.	PASS	Atlas-SNP
TEC	7006	hgsc.bcm.edu	37	4	48172266	48172266	+	Silent	SNP	G	G	A	rs2271173	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	185	220	0	1	0	G|0.583;A|0.417	0.417	strong	.	TEC	81	.	NM_003215	exon5	c.C453T	p.S151S	CTTACTGCTCTCA	.	PASS	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	37	14	81251255	81251255	+	Missense_Mutation	SNP	T	T	C	rs327463	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	268	268	232	0	1	0	T|0.657;C|0.343	0.343	strong	CEP128,NS,carcinoma,0,1	CEP128	146	1	NM_152446	exon14	c.A2195G	p.H732R	CTGATATGATTCT	.	PASS	Atlas-SNP
FER	2241	hgsc.bcm.edu	37	5	108281909	108281909	+	Missense_Mutation	SNP	C	C	G	rs2229086	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	41	56	0	0.61194	0	C|0.956;G|0.044	0.044	strong	.	FER	100	.	NM_005246	exon11	c.C1315G	p.L439V	TCTGCACTGGGCT	.	PASS	Atlas-SNP
ADRB2	154	hgsc.bcm.edu	37	5	148207633	148207633	+	Silent	SNP	G	G	A	rs1042720	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	74	103	0	0.556391	0	A|0.411;G|0.589	0.411	strong	.	ADRB2	42	.	NM_000024	exon1	c.G1239A	p.L413L	ACTGCTGTAAAGC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105408827	105408827	+	Missense_Mutation	SNP	A	A	C	rs11850949	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	171	173	0	1	0	A|0.540;C|0.460	0.460	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T12961G	p.L4321V	CATCCAACGAGGC	.	PASS	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	37	1	173474429	173474429	+	Silent	SNP	T	T	C	rs12026637	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	46	105	0	0.446602	0	T|0.805;C|0.195	0.195	strong	.	.	.	.	NM_178527	exon26	c.A3267G	p.Q1089Q	AGATGCTTGGATT	.	PASS	Atlas-SNP
N6AMT1	29104	hgsc.bcm.edu	37	21	30255347	30255347	+	Missense_Mutation	SNP	C	C	A	rs61735765	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	65	144	0	0.496183	0	C|0.881;A|0.119	0.119	strong	.	N6AMT1	31	.	NM_182749	exon2	c.G181T	p.A61S	GGAATGCAGATAC	.	PASS	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	37	20	47361610	47361610	+	Silent	SNP	G	G	A	rs55952330	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	44	51	0	0.483516	0	G|0.966;A|0.034	0.034	strong	.	PREX1	441	.	NM_020820	exon3	c.C366T	p.H122H	CTCCGGGTGTAAA	.	PASS	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	37	17	73922941	73922941	+	Missense_Mutation	SNP	T	T	C	rs2305913	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	80	155	0	0.481928	0	T|0.549;C|0.451	0.451	strong	.	FBF1	48	.	NM_001080542	exon9	c.A451G	p.R151G	GTCCTCTCAATGG	.	PASS	Atlas-SNP
TOP3B	8940	hgsc.bcm.edu	37	22	22323003	22323003	+	Silent	SNP	C	C	A	rs114760416	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	44	109	0	0.423077	0	C|0.998;A|0.002	0.002	strong	.	TOP3B	107	.	NM_003935	exon7	c.G726T	p.V242V	CTGCAGCACCCAG	.	PASS	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	37	16	29899021	29899021	+	Missense_Mutation	SNP	C	C	T	rs117448844	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	62	137	0	0.54386	0	C|0.998;T|0.002	0.002	strong	SEZ6L2_ENST00000350527,NS,carcinoma,0,2	SEZ6L2	137	2	NM_001243332	exon7	c.G1157A	p.R386H	AGCCGGCGCCCCT	.	PASS	Atlas-SNP
GPR82	27197	hgsc.bcm.edu	37	X	41587218	41587218	+	Silent	SNP	T	T	C	rs1023065	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	75	0	1	0	T|0.167;C|0.833	0.833	strong	.	GPR82	52	.	NM_080817	exon3	c.T939C	p.D313D	ATTAGATAAAACA	.	PASS	Atlas-SNP
STYK1	55359	hgsc.bcm.edu	37	12	10783729	10783729	+	Silent	SNP	A	A	G	rs2290717	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	49	129	0	0.392	0	A|0.701;G|0.299	0.299	strong	.	STYK1	55	.	NM_018423	exon5	c.T366C	p.S122S	GCTACCACTGCAA	.	PASS	Atlas-SNP
CLEC18B	497190	hgsc.bcm.edu	37	16	74451960	74451960	+	Silent	SNP	C	C	T	rs3869429		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	651	30	514	0	0.046083	0	.	.	weak	CLEC18B,NS,carcinoma,-1,4	CLEC18B	45	4	NM_001011880	exon3	c.G453A	p.T151T	CACCTGCGTGTAG	.	scavenged	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139275294	139275294	+	Missense_Mutation	SNP	G	G	C	rs3812571	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	22	59	0	0.478261	0	G|0.591;C|0.409	0.409	strong	SNAPC4,NS,carcinoma,0,2	SNAPC4	82	2	NM_003086	exon19	c.C2397G	p.H799Q	ATCGATGTGGAAC	.	PASS	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6906469	6906469	+	Silent	SNP	T	T	C	rs78491083	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	259	130	254	0	0.50193	0	T|0.994;C|0.006	0.006	strong	EMR1,NS,carcinoma,+1,1	EMR1	153	1	NM_001256253	exon9	c.T975C	p.D325D	GGAAGATGTGATA	.	PASS	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	37	2	32961858	32961858	+	Missense_Mutation	SNP	A	A	G	rs2273660	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	55	125	0	0.429688	0	A|0.866;G|0.134	0.134	strong	.	TTC27	71	.	NM_017735	exon12	c.A1427G	p.Y476C	TTTGTTATGAAAG	.	PASS	Atlas-SNP
CCDC170	80129	hgsc.bcm.edu	37	6	151914265	151914265	+	Silent	SNP	T	T	C	rs17081470	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	58	109	0	0.495726	0	T|0.914;C|0.086	0.086	strong	.	.	.	.	NM_025059	exon8	c.T1317C	p.L439L	TCAGCTTTCTCAG	.	PASS	Atlas-SNP
DOCK9	23348	hgsc.bcm.edu	37	13	99554621	99554621	+	Missense_Mutation	SNP	G	G	A	rs62620184	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	40	77	0	0.540541	0	G|0.975;A|0.025	0.025	strong	DOCK9_ENST00000448493,rectum,carcinoma,+1,3	DOCK9	311	3	NM_001130049	exon12	c.C1304T	p.A435V	ATCAGCGCCGGGG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105414790	105414790	+	Missense_Mutation	SNP	A	A	G	rs2582513	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	193	195	1	1	0.00512821	A|0.456;G|0.544	0.544	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T6998C	p.L2333P	TTGCCAAGGGCAG	.	PASS	Atlas-SNP
SMTNL2	342527	hgsc.bcm.edu	37	17	4495682	4495682	+	Silent	SNP	G	G	A	rs4790654	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	44	62	0	0.6875	0	G|0.837;A|0.163	0.163	strong	.	SMTNL2	57	.	NM_001114974	exon2	c.G426A	p.E142E	CAGTGAGTCGGAG	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55595115	55595115	+	Missense_Mutation	SNP	C	C	T	rs71490506	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	115	272	0	0.469388	0	C|0.913;G|0.000;T|0.087	0.087	strong	OR5L2,NS,carcinoma,0,1	OR5L2	135	1	NM_001004739	exon1	c.C421T	p.R141C	AAGCTGCGTGTGG	.	PASS	Atlas-SNP
C12orf50	160419	hgsc.bcm.edu	37	12	88379788	88379788	+	Missense_Mutation	SNP	C	C	T	rs11104703	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	328	172	301	0	0.52439	0	C|0.959;T|0.041	0.041	strong	.	C12orf50	70	.	NM_152589	exon11	c.G965A	p.R322H	TTATTGCGGTGAT	.	PASS	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	37	7	111512589	111512589	+	Silent	SNP	G	G	A	rs10257550	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	46	66	0	0.554217	0	G|0.930;A|0.070	0.070	strong	.	DOCK4	365	.	NM_014705	exon18	c.C1776T	p.T592T	TGGGTGGGTTCTC	.	PASS	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	37	7	5347749	5347749	+	Silent	SNP	G	G	A	rs9639976	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	104	72	0	1	0	G|0.833;A|0.167	0.167	strong	.	TNRC18	311	.	NM_001080495	exon30	c.C8895T	p.P2965P	GAGCACGGGCACG	.	PASS	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	37	14	21109278	21109278	+	Silent	SNP	A	A	T	rs11627438	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	75	77	0	0.986842	0	A|0.484;T|0.516	0.516	strong	OR6S1,NS,carcinoma,0,1	OR6S1	49	1	NM_001001968	exon1	c.T573A	p.A191A	GGTGCAAGCCAGG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9001835	9001835	+	Silent	SNP	G	G	A	rs12985778	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	158	192	0	1	0	G|0.353;A|0.647	0.647	strong	.	MUC16	4315	.	NM_024690	exon53	c.C40413T	p.P13471P	ACTCATGGGTCCA	.	PASS	Atlas-SNP
PHYH	5264	hgsc.bcm.edu	37	10	13340236	13340236	+	Missense_Mutation	SNP	G	G	A	rs28938169	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	53	144	0	0.40458	0	G|0.858;A|0.142	0.142	strong	PHYH,NS,malignant_melanoma,+2,2	PHYH	50	2	NM_006214	exon2	c.C85T	p.P29S	AAGTGGGATGAGC	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917522	2917522	+	Silent	SNP	G	G	A	rs61754924	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	22	47	0	0.44	0	G|0.973;A|0.027	0.027	strong	.	ZNF57	57	.	NM_173480	exon4	c.G903A	p.T301T	GAAGACGCACACG	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6648424	6648424	+	Missense_Mutation	SNP	G	G	A	rs4758443	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	49	123	0	0.4375	0	G|0.687;A|0.313	0.313	strong	DCHS1,colon,carcinoma,0,1	DCHS1	277	1	NM_003737	exon14	c.C5846T	p.T1949M	CGCACCGTGATGG	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3738971	3738971	+	Silent	SNP	A	A	G	rs600986	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	102	210	1	0.488038	0.0047619	A|0.311;G|0.689	0.689	strong	.	TJP3	79	.	NM_001267561	exon13	c.A1497G	p.P499P	CAGTCCACCGTCT	.	PASS	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	37	15	48058071	48058071	+	Missense_Mutation	SNP	G	G	A	rs532598	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	69	131	0	0.616071	0	G|0.549;N|0.000	.	strong	.	SEMA6D	322	.	NM_153617	exon14	c.G1433A	p.S478N	GGTGCAGTGCTGA	.	PASS	Atlas-SNP
KIAA0895	23366	hgsc.bcm.edu	37	7	36396735	36396735	+	Missense_Mutation	SNP	G	G	C	rs199774798	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	105	217	0	0.446809	0	.	.	weak	.	KIAA0895	89	.	NM_001100425	exon3	c.C643G	p.P215A	GCTTTGGAAGAGT	.	PASS	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	37	20	33574765	33574765	+	Silent	SNP	T	T	C	rs3746446	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	49	94	0	0.505155	0	T|0.819;C|0.181	0.181	strong	.	MYH7B	145	.	NM_020884	exon15	c.T1107C	p.N369N	CATGAATGATGGG	.	PASS	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28865760	28865760	+	Silent	SNP	T	T	C	rs2272387	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	145	136	0	1	0	T|0.595;C|0.405	0.405	strong	.	PLB1	255	.	NM_153021	exon58	c.T4210C	p.L1404L	AGCCGATTGCTCC	.	PASS	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	37	1	201190732	201190732	+	Silent	SNP	G	G	A	rs3738269	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	99	177	0	0.497487	0	G|0.775;A|0.225	0.225	strong	IGFN1_ENST00000335211,NS,carcinoma,0,4	IGFN1	220	4	NM_001164586	exon19	c.G10059A	p.V3353V	CCATGTGGGCACC	.	PASS	Atlas-SNP
ILK	3611	hgsc.bcm.edu	37	11	6630833	6630833	+	Silent	SNP	G	G	A	rs1043390	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	122	223	0	0.514768	0	G|0.669;A|0.331	0.331	strong	.	ILK	41	.	NM_001014794	exon9	c.G819A	p.P273P	GATGCCGTATGGA	.	PASS	Atlas-SNP
TAF8	129685	hgsc.bcm.edu	37	6	42044945	42044945	+	Silent	SNP	G	G	A	rs3800286	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	140	129	0	0.985915	0	G|0.303;A|0.697	0.697	strong	.	TAF8	25	.	NM_138572	exon8	c.G888A	p.R296R	TCTGCGGCCGGTG	.	PASS	Atlas-SNP
VENTX	27287	hgsc.bcm.edu	37	10	135053721	135053721	+	Missense_Mutation	SNP	C	C	A	rs9419033	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	12	28	0	0.5	0	C|0.917;A|0.083	0.083	strong	.	VENTX	24	.	NM_014468	exon3	c.C688A	p.P230T	CACCCCCCTACCC	.	PASS	Atlas-SNP
GSG1L	146395	hgsc.bcm.edu	37	16	27840271	27840271	+	Silent	SNP	C	C	T	rs117918036	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	59	88	0	0.5	0	C|0.977;T|0.023	0.023	strong	.	GSG1L	82	.	NM_001109763	exon5	c.G669A	p.A223A	GCCCCACGCCAGG	.	PASS	Atlas-SNP
BBS12	166379	hgsc.bcm.edu	37	4	123664446	123664446	+	Missense_Mutation	SNP	G	G	A	rs13135778	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	51	154	0	0.359155	0	G|0.857;A|0.143	0.143	strong	.	BBS12	63	.	NM_001178007	exon3	c.G1399A	p.D467N	GTGGGCGACGGGG	.	PASS	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	37	3	186459475	186459475	+	Missense_Mutation	SNP	C	C	G	rs5030084	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	48	118	0	0.363636	0	C|0.964;G|0.036	0.036	strong	.	KNG1	129	.	NM_001102416	exon10	c.C1290G	p.D430E	ACATGACTGGGGC	.	PASS	Atlas-SNP
PLCL2	23228	hgsc.bcm.edu	37	3	17051328	17051328	+	Silent	SNP	T	T	C	rs7653834	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	90	166	0	0.552147	0	C|0.402;N|0.000	0.402	strong	.	PLCL2	145	.	NM_015184	exon2	c.T112C	p.L38L	TACTTTTTACTGG	.	PASS	Atlas-SNP
UPK1A	11045	hgsc.bcm.edu	37	19	36157740	36157740	+	Missense_Mutation	SNP	C	C	T	rs61741212	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	97	169	0	0.449074	0	C|0.856;T|0.144	0.144	strong	.	UPK1A	23	.	NM_007000	exon1	c.C26T	p.A9V	CGGAGGCCGAGAA	.	PASS	Atlas-SNP
SLC17A4	10050	hgsc.bcm.edu	37	6	25779392	25779392	+	Silent	SNP	A	A	G	rs9358890	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	249	116	219	1	0.465863	0.00456621	A|0.877;G|0.123	0.123	strong	.	SLC17A4	79	.	NM_005495	exon12	c.A1470G	p.K490K	GGCTAAAGAGCAG	.	PASS	Atlas-SNP
NXPH4	11247	hgsc.bcm.edu	37	12	57619362	57619362	+	Silent	SNP	G	G	A	rs10783816	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	40	84	0	0.416667	0	G|0.659;A|0.341	0.341	strong	NXPH4,NS,carcinoma,0,3	NXPH4	40	3	NM_007224	exon2	c.G759A	p.P253P	CGACCCGTCGCAG	.	PASS	Atlas-SNP
EPB41L5	57669	hgsc.bcm.edu	37	2	120848049	120848049	+	Missense_Mutation	SNP	C	C	T	rs28930677	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	66	140	0	0.545455	0	C|0.971;T|0.029	0.029	strong	.	EPB41L5	98	.	NM_020909	exon12	c.C1000T	p.H334Y	AGTTCTCATCGAT	.	PASS	Atlas-SNP
MCMDC2	157777	hgsc.bcm.edu	37	8	67786633	67786633	+	Missense_Mutation	SNP	C	C	T	rs79944926	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	34	63	0	0.523077	0	C|0.946;T|0.054	0.054	strong	.	MCMDC2	84	.	NM_173518	exon3	c.C167T	p.A56V	TAGATGCTGAGCT	.	PASS	Atlas-SNP
VENTX	27287	hgsc.bcm.edu	37	10	135053773	135053773	+	Missense_Mutation	SNP	G	G	A	rs9418953	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	16	34	0	0.516129	0	G|0.919;A|0.081	0.081	strong	.	VENTX	24	.	NM_014468	exon3	c.G740A	p.G247D	CCCGGGGCCTGTG	.	PASS	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	37	16	16139714	16139714	+	Silent	SNP	T	T	C	rs35587	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	56	84	0	0.595745	0	T|0.576;C|0.424	0.424	strong	.	ABCC1	156	.	NM_004996	exon9	c.T1062C	p.N354N	CGTGAATGACACG	.	PASS	Atlas-SNP
APOBEC3H	164668	hgsc.bcm.edu	37	22	39497452	39497452	+	Missense_Mutation	SNP	A	A	G	rs139298	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	42	85	0	0.488372	0	A|0.449;G|0.551	0.551	strong	.	APOBEC3H	28	.	NM_001166003	exon3	c.A361G	p.K121E	CAGCAGAAGGGGC	.	PASS	Atlas-SNP
PTX4	390667	hgsc.bcm.edu	37	16	1537510	1537510	+	Silent	SNP	C	C	T	rs201970670	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	21	66	0	0.396226	0	C|0.997;T|0.003	0.003	strong	.	PTX4	46	.	NM_001013658	exon2	c.G588A	p.P196P	GGAGGTCGGGCCC	.	PASS	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	37	2	62067433	62067433	+	Missense_Mutation	SNP	T	T	C	rs17513722	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	117	273	1	0.506494	0.003663	T|0.844;C|0.156	0.156	strong	FAM161A_ENST00000405894,colon,carcinoma,+2,3	FAM161A	200	3	NM_032180	exon3	c.A706G	p.I236V	CTGTAATTGTGGG	.	PASS	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	37	12	46321514	46321514	+	Missense_Mutation	SNP	A	A	T	rs7315731	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	55	69	0	0.982143	0	A|0.591;T|0.409	0.409	strong	.	SCAF11	145	.	NM_004719	exon11	c.T1970A	p.F657Y	TTATTGAAATCTT	.	PASS	Atlas-SNP
C8A	731	hgsc.bcm.edu	37	1	57383357	57383357	+	Missense_Mutation	SNP	C	C	T	rs41285938	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	151	246	0	0.5189	0	C|0.992;T|0.008	0.008	strong	.	C8A	103	.	NM_000562	exon11	c.C1723T	p.P575S	TCGTGTCCAGGGC	.	PASS	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	37	9	139371234	139371234	+	Silent	SNP	G	G	A	rs10781497	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	54	93	0	0.5	0	G|0.869;A|0.131	0.131	strong	.	SEC16A	249	.	NM_014866	exon3	c.C834T	p.D278D	TCTTCCGTCACTG	.	PASS	Atlas-SNP
TNC	3371	hgsc.bcm.edu	37	9	117804544	117804544	+	Silent	SNP	T	T	C	rs1061495	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	41	107	0	0.493976	0	T|0.688;C|0.312	0.312	strong	.	TNC	282	.	NM_002160	exon18	c.A5202G	p.T1734T	TTGGGCTGTGGGT	.	PASS	Atlas-SNP
SDCCAG8	10806	hgsc.bcm.edu	37	1	243579112	243579112	+	Silent	SNP	G	G	A	rs10927011	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	302	133	259	1	0.440397	0.003861	G|0.576;A|0.424	0.424	strong	.	SDCCAG8	73	.	NM_006642	exon14	c.G1725A	p.E575E	AATGGAGGCCCAG	.	PASS	Atlas-SNP
STK33	65975	hgsc.bcm.edu	37	11	8486310	8486310	+	Silent	SNP	C	C	A	rs1446464	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	377	150	357	0	0.397878	0	C|0.587;A|0.413	0.413	strong	STK33_ENST00000447869,NS,adenoma,0,2	STK33	147	2	NM_030906	exon5	c.G399T	p.A133A	GTCTGTCGCTTCA	.	PASS	Atlas-SNP
NIPAL2	79815	hgsc.bcm.edu	37	8	99208190	99208190	+	Silent	SNP	A	A	C	rs3779721	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	58	111	0	0.449612	0	A|0.642;C|0.358	0.358	strong	.	NIPAL2	23	.	NM_024759	exon9	c.T924G	p.T308T	AAATACAGTGAGA	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291597	1291597	+	Missense_Mutation	SNP	C	C	G	rs1800991	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	350	319	521	0	0.911429	0	C|0.500;G|0.500	0.500	strong	.	TPSAB1	24	.	NM_003294	exon4	c.C396G	p.N132K	GGTGAACGTCTCC	.	PASS	Atlas-SNP
CLEC18C	283971	hgsc.bcm.edu	37	16	70211370	70211370	+	Missense_Mutation	SNP	C	C	G	rs3869428		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	357	82	466	0	0.229692	0	.	.	weak	CLEC18C,rectum,carcinoma,0,1	CLEC18C	15	1	NM_173619	exon3	c.C443G	p.T148S	CCTGCACCCACTA	.	scavenged	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152529260	152529260	+	Silent	SNP	G	G	A	rs3798756	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	64	109	0	0.52459	0	G|0.854;A|0.146	0.146	strong	.	SYNE1	3227	.	NM_182961	exon125	c.C22671T	p.I7557I	GTCAATGATCCCC	.	PASS	Atlas-SNP
OR13C8	138802	hgsc.bcm.edu	37	9	107332377	107332377	+	Missense_Mutation	SNP	T	T	A	rs76017116	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	37	96	0	0.362745	0	T|0.992;A|0.008	0.008	strong	.	OR13C8	77	.	NM_001004483	exon1	c.T929A	p.I310K	AAAACATACTGTG	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78562618	78562618	+	Silent	SNP	A	A	G	rs383190	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	68	120	0	0.5	0	A|0.947;G|0.053	0.053	strong	NAV3,NS,carcinoma,+2,1	NAV3	506	1	NM_014903	exon24	c.A4953G	p.A1651A	GGGAGCACTGAAT	.	PASS	Atlas-SNP
TECPR1	25851	hgsc.bcm.edu	37	7	97852443	97852443	+	Silent	SNP	C	C	T	rs61745947	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	50	118	0	0.520833	0	C|0.985;T|0.015	0.015	strong	.	TECPR1	77	.	NM_015395	exon21	c.G2787A	p.V929V	GGGGGGCACCTCC	.	PASS	Atlas-SNP
HHATL	57467	hgsc.bcm.edu	37	3	42735150	42735150	+	Missense_Mutation	SNP	T	T	C	rs11079	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	41	91	0	0.471264	0	T|0.381;C|0.619	0.619	strong	.	HHATL	49	.	NM_020707	exon10	c.A1207G	p.M403V	TTTGCATCCAGAG	.	PASS	Atlas-SNP
METTL25	84190	hgsc.bcm.edu	37	12	82792666	82792666	+	Silent	SNP	C	C	T	rs10506872	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	22	56	0	0.431373	0	C|0.955;T|0.045	0.045	strong	.	.	.	.	NM_032230	exon4	c.C624T	p.T208T	AAATACCAATACT	.	PASS	Atlas-SNP
CALB2	794	hgsc.bcm.edu	37	16	71411636	71411636	+	Missense_Mutation	SNP	G	G	A	rs11545954	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	34	74	0	0.5	0	G|0.867;A|0.133	0.133	strong	.	CALB2	46	.	NM_007088	exon4	c.G328A	p.A110T	TCCAGCGCCGAGT	.	PASS	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	37	17	43545893	43545893	+	Silent	SNP	T	T	C	rs1879581	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	140	133	0	0.979021	0	T|0.863;C|0.137	0.137	strong	.	PLEKHM1	69	.	NM_014798	exon5	c.A990G	p.T330T	GATCTCTGTTTCT	.	PASS	Atlas-SNP
RGS9BP	388531	hgsc.bcm.edu	37	19	33167837	33167837	+	Missense_Mutation	SNP	C	C	T	rs35413309	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	6	14	0	0.6	0	C|0.962;T|0.038	0.038	strong	.	RGS9BP	9	.	NM_207391	exon1	c.C668T	p.A223V	TGCTGGCGGCTGT	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152323132	152323132	+	Nonsense_Mutation	SNP	G	G	T	rs12568784	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	282	132	284	0	0.468085	0	G|0.756;T|0.244	0.244	strong	.	FLG2	431	.	NM_001014342	exon3	c.C7130A	p.S2377X	GACCATGAAAGGT	.	PASS	Atlas-SNP
C10orf118	55088	hgsc.bcm.edu	37	10	115905428	115905428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	91	144	0	0.583333	0	.	.	none	.	C10orf118	70	.	NM_018017	exon5	c.G981T	p.K327N	TTTTTCCTTTCGA	.	PASS	Atlas-SNP
GP1BA	2811	hgsc.bcm.edu	37	17	4836973	4836973	+	Silent	SNP	A	A	G	rs6067	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	71	141	0	0.529851	0	A|0.940;G|0.060	0.060	strong	.	GP1BA	53	.	NM_000173	exon2	c.A1074G	p.R358R	ACCTAGATGGACC	.	PASS	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	37	7	143042837	143042837	+	Silent	SNP	C	C	T	rs2272251	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	22	53	0	0.55	0	C|0.502;T|0.498	0.498	strong	CLCN1,NS,carcinoma,0,1	CLCN1	141	1	NM_000083	exon17	c.C2154T	p.D718D	CGAAGACCTCTCT	.	PASS	Atlas-SNP
KISS1	3814	hgsc.bcm.edu	37	1	204161947	204161947	+	Missense_Mutation	SNP	C	C	T	rs12998	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	20	59	0	0.408163	0	C|0.968;T|0.032	0.032	strong	.	KISS1	6	.	NM_002256	exon2	c.G58A	p.E20K	ATGGCTCCCCAAA	.	PASS	Atlas-SNP
FDFT1	2222	hgsc.bcm.edu	37	8	11687923	11687923	+	Silent	SNP	T	T	A	rs73207296	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	51	98	0	0.481132	0	T|0.985;A|0.015	0.015	strong	.	FDFT1	25	.	NM_004462	exon6	c.T873A	p.I291I	TGCTATTCCACAG	.	PASS	Atlas-SNP
CNTD2	79935	hgsc.bcm.edu	37	19	40732484	40732484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	40	69	0	0.547945	0	.	.	none	.	CNTD2	22	.	NM_024877	exon1	c.C65A	p.A22D	CTGGGGGCCCAGC	.	PASS	Atlas-SNP
NLRP8	126205	hgsc.bcm.edu	37	19	56467167	56467167	+	Silent	SNP	C	C	T	rs375534172		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	58	115	0	0.386667	0	.	.	weak	.	NLRP8	225	.	NM_176811	exon3	c.C1743T	p.F581F	GTCTTTCGGTAAT	.	PASS	Atlas-SNP
ZNF311	282890	hgsc.bcm.edu	37	6	28963248	28963248	+	Missense_Mutation	SNP	T	T	G	rs6456880	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	66	132	0	0.511628	0	G|0.602;N|0.000	0.602	strong	ZNF311,colon,carcinoma,0,2	ZNF311	59	2	NM_001010877	exon7	c.A1531C	p.K511Q	AGTGCTTATCTTG	.	PASS	Atlas-SNP
GSTO2	119391	hgsc.bcm.edu	37	10	106039185	106039185	+	Missense_Mutation	SNP	A	A	G	rs156697	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	92	105	1	0.989247	0.00952381	A|0.537;G|0.463	0.463	strong	GSTO2,NS,carcinoma,0,1	GSTO2	23	1	NM_183239	exon5	c.A424G	p.N142D	TGCACTAATCTGA	.	PASS	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145114844	145114844	+	Missense_Mutation	SNP	C	C	T	rs7004867	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	34	65	0	0.515152	0	C|0.921;T|0.079	0.079	strong	OPLAH,NS,carcinoma,0,2	OPLAH	78	2	NM_017570	exon2	c.G92A	p.R31Q	AAGACCCGCACGT	.	PASS	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	37	10	72520330	72520330	+	Silent	SNP	A	A	G	rs10823615	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	63	61	0	1	0	A|0.634;G|0.366	0.366	strong	.	ADAMTS14	148	.	NM_139155	exon22	c.A3402G	p.A1134A	TGCTGCAGAGCCT	.	PASS	Atlas-SNP
KBTBD6	89890	hgsc.bcm.edu	37	13	41705110	41705110	+	Missense_Mutation	SNP	T	T	C	rs200203929		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	52	117	0	0.485981	0	T|0.999;C|0.001	0.001	weak	.	KBTBD6	83	.	NM_152903	exon1	c.A1538G	p.N513S	AAGTCATTGCGCT	.	PASS	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	37	4	128811038	128811038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	61	158	0	0.5	0	.	.	none	.	PLK4	65	.	NM_014264	exon7	c.A1477G	p.T493A	AAAACTACTGAAT	.	PASS	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	37	6	43250710	43250710	+	Missense_Mutation	SNP	G	G	C	rs3800295	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	27	59	0	0.409091	0	G|0.937;C|0.063	0.063	strong	.	TTBK1	124	.	NM_032538	exon14	c.G2232C	p.E744D	GGAAGAGGAAGAA	.	PASS	Atlas-SNP
C7	730	hgsc.bcm.edu	37	5	40955561	40955561	+	Missense_Mutation	SNP	G	G	C	rs1063499	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	69	71	0	1	0	G|0.499;C|0.499	0.499	strong	.	C7	136	.	NM_000587	exon10	c.G1166C	p.S389T	GCCTTAGTTACCT	.	PASS	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	T	C	rs79807294	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	293	44	409	6	0.150171	0.0146699	T|0.993;C|0.007	0.007	strong	MUC7,right_upper_lobe,carcinoma,0,4	MUC7	91	4	NM_001145007	exon4	c.T724C	p.S242P	ACACCTTCTGCAA	.	scavenged	Atlas-SNP
B3GAT2	135152	hgsc.bcm.edu	37	6	71665986	71665986	+	Silent	SNP	G	G	A	rs1574490	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	9	8	0	0.529412	0	G|0.463;A|0.537	0.537	strong	B3GAT2,bladder,carcinoma,-1,1	B3GAT2	33	1	NM_080742	exon1	c.C147T	p.G49G	TCGGGCGCCCCCG	.	PASS	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	37	13	103528002	103528002	+	Missense_Mutation	SNP	G	G	C	rs17655	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	51	90	0	0.53125	0	G|0.655;C|0.345	0.345	strong	.	.	.	.	NM_001204425	exon23	c.G4672C	p.D1558H	AGTGAAGATGCTG	.	PASS	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	37	6	117114025	117114025	+	Silent	SNP	G	G	A	rs6901250	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	64	85	0	0.520325	0	G|0.686;A|0.314	0.314	strong	GPRC6A,NS,carcinoma,0,2	GPRC6A	152	2	NM_148963	exon6	c.C2061T	p.A687A	GCTGAAGGCTAGC	.	PASS	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108380213	108380213	+	Silent	SNP	G	G	A	rs4917481	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	53	85	0	0.535354	0	G|0.707;A|0.293	0.293	strong	.	SORCS1	534	.	NM_001206572	exon20	c.C2769T	p.Y923Y	CCACACGTAAGTG	.	PASS	Atlas-SNP
EIF2AK3	9451	hgsc.bcm.edu	37	2	88879131	88879131	+	Silent	SNP	T	T	C	rs1805164	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	26	68	0	0.38806	0	T|0.725;C|0.275	0.275	strong	.	EIF2AK3	160	.	NM_004836	exon11	c.A1791G	p.Q597Q	CAGGCATTGAATT	.	PASS	Atlas-SNP
SLCO1B1	10599	hgsc.bcm.edu	37	12	21331549	21331549	+	Missense_Mutation	SNP	T	T	C	rs4149056	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	89	216	0	0.442786	0	T|0.890;C|0.110	0.110	strong	.	SLCO1B1	151	.	NM_006446	exon6	c.T521C	p.V174A	TATATGTGTTCAT	.	PASS	Atlas-SNP
SPAG16	79582	hgsc.bcm.edu	37	2	214794743	214794743	+	Missense_Mutation	SNP	A	A	C	rs12623569	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	110	153	0	0.526316	0	A|0.722;C|0.278	0.278	strong	.	SPAG16	134	.	NM_024532	exon12	c.A1274C	p.K425T	TATGTAAAGGCGA	.	PASS	Atlas-SNP
HOMER3	9454	hgsc.bcm.edu	37	19	19049198	19049198	+	Silent	SNP	G	G	A	rs1064351	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	52	182	0	0.393939	0	G|0.682;A|0.318	0.318	strong	.	HOMER3	19	.	NM_001145722	exon4	c.C267T	p.Y89Y	CAGGCCGTAGACT	.	PASS	Atlas-SNP
BTBD10	84280	hgsc.bcm.edu	37	11	13441126	13441126	+	Silent	SNP	A	A	G	rs7114113	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	80	222	0	0.416667	0	A|0.855;G|0.145	0.145	strong	.	BTBD10	43	.	NM_032320	exon4	c.T465C	p.N155N	TTTTGCATTTTCA	.	PASS	Atlas-SNP
PEPD	5184	hgsc.bcm.edu	37	19	33878837	33878837	+	Missense_Mutation	SNP	G	G	A	rs17570	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	55	108	0	0.470085	0	G|0.706;A|0.294	0.294	strong	.	PEPD	48	.	NM_000285	exon14	c.C1303T	p.L435F	GGTTAAGGAAGGA	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	37	22	26222454	26222454	+	Missense_Mutation	SNP	C	C	T	rs9624909	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	101	182	0	0.474178	0	C|0.835;T|0.165	0.165	strong	.	MYO18B	322	.	NM_032608	exon14	c.C2774T	p.S925L	TGGTCTCACTCAT	.	PASS	Atlas-SNP
OGFOD3	79701	hgsc.bcm.edu	37	17	80373452	80373452	+	Silent	SNP	C	C	T	rs4789769	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	17	33	0	0.485714	0	C|0.728;T|0.272	0.272	strong	.	.	.	.	NM_175902	exon2	c.G126A	p.P42P	TAGCCACGGCCTC	.	PASS	Atlas-SNP
PLG	5340	hgsc.bcm.edu	37	6	161139857	161139857	+	Silent	SNP	A	A	G	rs13231	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	48	87	0	0.564706	0	A|0.787;G|0.213	0.213	strong	.	PLG	150	.	NM_000301	exon9	c.A1083G	p.Q361Q	GGAACAATTGGCT	.	PASS	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	37	14	23312554	23312554	+	Silent	SNP	C	C	G	rs2236302	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	35	71	0	0.492958	0	C|0.833;G|0.167	0.167	strong	.	MMP14	40	.	NM_004995	exon5	c.C777G	p.P259P	GGCACCCTTTTAC	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	6986259	6986259	+	Silent	SNP	G	G	A	rs62081531	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	81	173	1	0.45	0.00578035	G|0.810;A|0.190	0.190	strong	LAMA1,colon,carcinoma,0,2	LAMA1	458	2	NM_005559	exon37	c.C5256T	p.H1752H	AAGGACGTGGCTT	.	scavenged	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179464527	179464527	+	Missense_Mutation	SNP	T	T	C	rs1001238	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	40	77	0	0.547945	0	T|0.561;C|0.439	0.439	strong	.	TTN	18412	.	NM_001267550	exon289	c.A56101G	p.N18701D	TAACATTGGTTCC	.	PASS	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	37	12	939302	939302	+	Silent	SNP	A	A	G	rs10774466	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	197	247	0	1	0	A|0.298;G|0.702	0.702	strong	WNK1_ENST00000537687,NS,carcinoma,+1,2	WNK1	403	2	NM_001184985	exon4	c.A1287G	p.A429A	TGCTGCACAGATC	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73142296	73142296	+	Missense_Mutation	SNP	C	C	T	rs2973571	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	48	113	0	0.484848	0	C|0.829;T|0.171	0.171	strong	.	.	.	.	NM_001080479	exon12	c.C1631T	p.S544L	TACAGTCGAAGGT	.	PASS	Atlas-SNP
TRPV3	162514	hgsc.bcm.edu	37	17	3422032	3422032	+	Silent	SNP	G	G	A	rs7216486	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	185	178	1	1	0.00561798	G|0.418;A|0.582	0.582	strong	.	TRPV3	85	.	NM_001258205	exon15	c.C1923T	p.D641D	GTTCAGGTCACCC	.	PASS	Atlas-SNP
ASCC2	84164	hgsc.bcm.edu	37	22	30200801	30200801	+	Silent	SNP	G	G	C	rs117333854	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	103	133	0	0.476852	0	G|0.996;C|0.004	0.004	strong	.	ASCC2	53	.	NM_032204	exon13	c.C1179G	p.A393A	GATGTAGGCAGTC	.	PASS	Atlas-SNP
SRP72	6731	hgsc.bcm.edu	37	4	57333822	57333822	+	Silent	SNP	G	G	T	rs12513091	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	73	99	0	0.634783	0	A|0.000;C|0.000;G|0.800;T|0.199	0.199	strong	SRP72,NS,carcinoma,0,1	SRP72	59	1	NM_006947	exon1	c.G21T	p.G7G	CAGCGGGGGGGTG	.	PASS	Atlas-SNP
SERPINI2	5276	hgsc.bcm.edu	37	3	167164187	167164187	+	Silent	SNP	A	A	G	rs2272138	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	18	47	0	0.473684	0	A|0.775;G|0.225	0.225	strong	.	SERPINI2	85	.	NM_001012303	exon9	c.T1164C	p.N388N	TGTTGGATTATGC	.	PASS	Atlas-SNP
UBXN6	80700	hgsc.bcm.edu	37	19	4454083	4454083	+	Missense_Mutation	SNP	C	C	T	rs1127888	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	26	48	0	0.928571	0	T|0.211;G|0.000;C|0.788	0.211	strong	.	UBXN6	27	.	NM_025241	exon2	c.G91A	p.A31T	TGTGGGCCTTTTC	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12401021	12401021	+	Missense_Mutation	SNP	C	C	T	rs80272295	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	54	112	0	0.465517	0	C|0.885;T|0.115	0.115	strong	.	VWDE	123	.	NM_001135924	exon14	c.G3025A	p.G1009R	GTTTCCCACCCAC	.	PASS	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	37	15	90246336	90246336	+	Silent	SNP	A	A	G	rs16974175	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	170	179	1	0.994152	0.00558659	A|0.575;G|0.425	0.425	strong	.	WDR93	63	.	NM_020212	exon3	c.A459G	p.L153L	AGATTTAGGGAAT	.	PASS	Atlas-SNP
UGT2B4	7363	hgsc.bcm.edu	37	4	70346565	70346565	+	Missense_Mutation	SNP	A	A	T	rs13119049	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	71	163	0	0.473333	0	A|0.853;T|0.147	0.147	strong	.	UGT2B4	105	.	NM_021139	exon6	c.T1374A	p.D458E	TGCTCGATCAAGG	.	PASS	Atlas-SNP
TMEM63A	9725	hgsc.bcm.edu	37	1	226046974	226046974	+	Silent	SNP	T	T	C	rs2292561	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	125	183	0	0.568182	0	T|0.916;C|0.084	0.084	strong	.	TMEM63A	75	.	NM_014698	exon15	c.A1299G	p.L433L	GAAAAATAGCCCC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281039	152281039	+	Missense_Mutation	SNP	G	G	A	rs7522925	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	528	160	341	0	0.30303	0	G|0.716;A|0.284	0.284	strong	.	FLG	900	.	NM_002016	exon3	c.C6323T	p.A2108V	CTGGGCGCAGACT	.	PASS	Atlas-SNP
PRAMEF11	440560	hgsc.bcm.edu	37	1	12888397	12888397	+	Missense_Mutation	SNP	C	C	T	rs78478513		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	511	126	341	45	0.246575	0.131965	C|0.250;T|0.750	0.750	weak	PRAMEF11,NS,other,0,1	PRAMEF11	72	1	NM_001146344	exon2	c.G127A	p.D43N	GCCCATCGAGCAC	.	scavenged	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	37	11	5364431	5364431	+	Silent	SNP	G	G	A	rs58233587	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	18	31	0	0.461538	0	G|0.886;A|0.114	0.114	strong	OR51B5,NS,carcinoma,-1,1	OR51B5	60	1	NM_001005567	exon5	c.C324T	p.L108L	AGACTCGAGAAAG	.	PASS	Atlas-SNP
OMP	4975	hgsc.bcm.edu	37	11	76813961	76813961	+	Missense_Mutation	SNP	C	C	T	rs2233546	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	67	103	0	0.485507	0	C|0.955;T|0.045	0.045	strong	.	OMP	14	.	NM_006189	exon1	c.C76T	p.R26W	CAGATGCGGCTAC	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17085592	17085592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	27	105	0	0.236842	0	.	.	none	.	.	.	.	NM_001271733	exon9	c.C1129T	p.R377C	ACCAGCGCTGGCA	.	PASS	Atlas-SNP
IL22RA1	58985	hgsc.bcm.edu	37	1	24460797	24460797	+	Silent	SNP	T	T	G	rs17852649	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	158	135	0	1	0	T|0.401;G|0.599	0.599	strong	.	IL22RA1	62	.	NM_021258	exon4	c.A435C	p.P145P	ACGGATTGGCGTG	.	PASS	Atlas-SNP
EYA2	2139	hgsc.bcm.edu	37	20	45717954	45717954	+	Silent	SNP	C	C	T	rs866937	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	53	101	0	0.486239	0	C|0.768;T|0.232	0.232	strong	.	EYA2	85	.	NM_172110	exon8	c.C738T	p.D246D	CTCCGACGGGAAG	.	PASS	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	37	12	4554630	4554630	+	Missense_Mutation	SNP	A	A	G	rs11613495	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	25	63	0	0.431034	0	A|0.879;G|0.121	0.121	strong	.	FGF6	40	.	NM_020996	exon1	c.T107C	p.V36A	GAGGGCACCACCA	.	PASS	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	37	3	58154327	58154327	+	Silent	SNP	C	C	T	rs8640	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	59	126	0	0.406897	0	C|0.573;T|0.427	0.427	strong	.	FLNB	430	.	NM_001164317	exon45	c.C7452T	p.S2484S	GATCAGCGTCAAA	.	PASS	Atlas-SNP
CRHR1	1394	hgsc.bcm.edu	37	17	43907896	43907896	+	Silent	SNP	T	T	C	rs16940665	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	64	66	0	1	0	T|0.862;C|0.138	0.138	strong	.	CRHR1	48	.	NM_001145146	exon8	c.T756C	p.T252T	CTCCACTGACCGG	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23905711	23905711	+	Silent	SNP	A	A	G	rs2737699	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	50	113	0	0.434783	0	G|0.232;N|0.000	0.232	strong	.	SACS	871	.	NM_014363	exon10	c.T12304C	p.L4102L	TTGCCAATGCTAA	.	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	134108546	134108546	+	Missense_Mutation	SNP	T	T	C	rs2069569	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	49	113	0	0.429825	0	C|0.598;N|0.002	0.598	strong	.	TG	416	.	NM_003235	exon43	c.T7501C	p.W2501R	TCTTTATGGGTAG	.	PASS	Atlas-SNP
OVGP1	5016	hgsc.bcm.edu	37	1	111966291	111966291	+	Silent	SNP	C	C	T	rs954739	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	88	157	0	0.51462	0	C|0.825;T|0.175	0.175	strong	.	OVGP1	177	.	NM_002557	exon5	c.G357A	p.K119K	AATAAACTTTTCA	.	PASS	Atlas-SNP
IFNA4	3441	hgsc.bcm.edu	37	9	21187311	21187311	+	Missense_Mutation	SNP	C	C	T	rs1062571	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	345	147	356	0	0.426087	0	C|0.402;T|0.598	0.598	strong	.	IFNA4	34	.	NM_021068	exon1	c.G220A	p.A74T	CTTGAGCCTTCTG	.	PASS	Atlas-SNP
FABP3	2170	hgsc.bcm.edu	37	1	31842320	31842320	+	Missense_Mutation	SNP	T	T	C	rs2228194	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	469	218	502	0	0.464819	0	T|0.890;G|0.002;C|0.024;A|0.084	0.024	strong	.	FABP3	12	.	NM_004102	exon2	c.A158G	p.K53R	TGTGTTTTTAGGG	.	PASS	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56383744	56383744	+	Missense_Mutation	SNP	T	T	C	rs11079346	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	42	76	0	0.506024	0	T|0.694;C|0.306	0.306	strong	.	BZRAP1	287	.	NM_004758	exon26	c.A5183G	p.H1728R	GTTGTGTGGGCTG	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43922942	43922942	+	Missense_Mutation	SNP	T	T	C	rs62621252	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	44	33	0	1	0	T|0.851;C|0.149	0.149	strong	.	.	.	.	NM_175882	exon1	c.T670C	p.S224P	GGGGGGTCTGGTG	.	PASS	Atlas-SNP
ALKBH3	221120	hgsc.bcm.edu	37	11	43913604	43913604	+	Silent	SNP	G	G	A	rs16937692	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	62	162	0	0.430556	0	G|0.961;A|0.039	0.039	strong	.	ALKBH3	33	.	NM_139178	exon7	c.G384A	p.Q128Q	TTATCAGCAACCA	.	PASS	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	37	17	78865546	78865546	+	Silent	SNP	T	T	C	rs2289764	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	34	79	0	0.515152	0	T|0.634;C|0.366	0.366	strong	.	RPTOR	122	.	NM_020761	exon18	c.T2010C	p.L670L	TCATCTTGTGGTT	.	PASS	Atlas-SNP
TPSG1	25823	hgsc.bcm.edu	37	16	1271890	1271890	+	Missense_Mutation	SNP	G	G	T	rs1004041	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	133	112	0	0.992537	0	G|0.435;T|0.558	0.558	strong	.	TPSG1	19	.	NM_012467	exon6	c.C864A	p.F288L	GAGGAAGAAGCCA	.	PASS	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	37	19	55715342	55715342	+	Missense_Mutation	SNP	C	C	T	rs55870162	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	76	162	0	0.490323	0	C|0.980;T|0.020	0.020	strong	.	PTPRH	139	.	NM_002842	exon5	c.G694A	p.D232N	TGCCATCGGGGAC	.	PASS	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	37	1	179972337	179972337	+	Silent	SNP	A	A	C	rs17371159	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	42	104	0	0.43299	0	A|0.930;C|0.070	0.070	strong	.	CEP350	418	.	NM_014810	exon7	c.A1047C	p.R349R	GATTCGAACACCT	.	PASS	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	37	4	38774889	38774889	+	Missense_Mutation	SNP	T	T	C	rs4129009	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	94	169	0	0.484536	0	T|0.840;C|0.160	0.160	strong	.	TLR10	87	.	NM_001017388	exon2	c.A2323G	p.I775V	CATTAATAGCAGC	.	PASS	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	37	4	155244475	155244475	+	Missense_Mutation	SNP	G	G	T	rs12500437	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	16	43	0	0.4	0	G|0.235;T|0.765	0.765	strong	.	DCHS2	594	.	NM_001142552	exon8	c.C4025A	p.P1342H	GGCATAGGTCTAG	.	PASS	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	37	17	74383648	74383648	+	Missense_Mutation	SNP	C	C	T	rs56341546	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	15	19	0	0.555556	0	C|0.994;T|0.006	0.006	strong	.	SPHK1	24	.	NM_182965	exon6	c.C1394T	p.P465L	TGCCACCGCCAGA	.	PASS	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	37	17	4574751	4574751	+	Missense_Mutation	SNP	T	T	A	rs9436	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	37	75	0	0.430233	0	T|0.893;A|0.107	0.107	strong	.	PELP1	102	.	NM_014389	exon17	c.A3376T	p.T1126S	GCTCTGTGGGAGG	.	PASS	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	37	12	125438713	125438713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	2	117	0	0.0162602	0	.	.	none	DHX37,NS,carcinoma,+1,1	DHX37	114	1	NM_032656	exon19	c.G2498A	p.R833Q	CGGGCCCGCTTGC	.	scavenged	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	37	14	59797373	59797373	+	Silent	SNP	G	G	A	rs28927674	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	72	152	0	0.461538	0	G|0.939;A|0.061	0.061	strong	DAAM1,colon,carcinoma,+1,1	DAAM1	95	1	NM_001270520	exon13	c.G1527A	p.A509A	GGTGGCGGACCTC	.	PASS	Atlas-SNP
ECI2	10455	hgsc.bcm.edu	37	6	4116262	4116262	+	Missense_Mutation	SNP	G	G	A	rs7166	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	56	126	0	0.491228	0	G|0.699;A|0.301	0.301	strong	.	ECI2	59	.	NM_206836	exon10	c.C1031T	p.A344V	CTCAAGGCCTGGA	.	PASS	Atlas-SNP
UGT3A1	133688	hgsc.bcm.edu	37	5	35965970	35965970	+	Missense_Mutation	SNP	A	A	C	rs3756669	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	24	41	0	0.393443	0	C|0.152;N|0.000	0.152	strong	.	UGT3A1	95	.	NM_152404	exon4	c.T361G	p.C121G	AACTACATTGAGT	.	PASS	Atlas-SNP
MCM8	84515	hgsc.bcm.edu	37	20	5953815	5953815	+	Silent	SNP	A	A	G	rs34464794	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	63	131	0	0.456522	0	A|0.960;G|0.040	0.040	strong	MCM8_ENST00000378896,NS,carcinoma,+2,2	MCM8	125	2	NM_032485	exon12	c.A1368G	p.P456P	AGATCCAGGCCTA	.	PASS	Atlas-SNP
CUL7	9820	hgsc.bcm.edu	37	6	43008298	43008298	+	Silent	SNP	C	C	T	rs2273917	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	45	91	0	0.454545	0	C|0.709;T|0.291	0.291	strong	.	CUL7	133	.	NM_001168370	exon21	c.G4245A	p.L1415L	CAGCTTCAGGAGT	.	PASS	Atlas-SNP
FTSJ3	117246	hgsc.bcm.edu	37	17	61903445	61903445	+	Missense_Mutation	SNP	G	G	C	rs2584625	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	108	101	0	0.981818	0	G|0.317;C|0.682	0.682	strong	.	FTSJ3	63	.	NM_017647	exon5	c.C271G	p.Q91E	TGTCCTGCTGGAG	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36856616	36856616	+	Missense_Mutation	SNP	G	G	A	rs16987188	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	17	28	0	0.515152	0	G|0.949;A|0.051	0.051	strong	.	KIAA1755	145	.	NM_001029864	exon6	c.C1898T	p.A633V	AGGACCGCCAGCC	.	PASS	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	37	8	142222445	142222445	+	Missense_Mutation	SNP	T	T	C	rs3739238	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	44	111	0	0.494382	0	T|0.321;C|0.679	0.679	strong	.	SLC45A4	71	.	NM_001080431	exon7	c.A1999G	p.N667D	ACACGTTGGGATA	.	PASS	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	37	12	4553383	4553383	+	Silent	SNP	A	A	G	rs2241279	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	45	106	0	0.432692	0	A|0.548;G|0.452	0.452	strong	.	FGF6	40	.	NM_020996	exon2	c.T366C	p.T122T	CTCCACAGTGGAA	.	PASS	Atlas-SNP
EP300	2033	hgsc.bcm.edu	37	22	41542753	41542753	+	Silent	SNP	A	A	G	rs61756763	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	24	32	0	0.55814	0	A|0.997;G|0.003	0.003	strong	.	EP300	367	.	NM_001429	exon11	c.A2064G	p.L688L	CCCTCTACCTGAC	.	PASS	Atlas-SNP
ADAMTS4	9507	hgsc.bcm.edu	37	1	161167989	161167989	+	Silent	SNP	G	G	A	rs12740751	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	53	105	0	0.514563	0	G|0.986;A|0.014	0.014	strong	.	ADAMTS4	171	.	NM_005099	exon1	c.C429T	p.H143H	ATCCCAGTGCAGA	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117686840	117686840	+	Silent	SNP	T	T	C	rs2229078	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	60	100	0	0.48	0	T|0.968;C|0.032	0.032	strong	.	ROS1	728	.	NM_002944	exon19	c.A2877G	p.E959E	ATTTCCTTCAATC	.	PASS	Atlas-SNP
OR6B1	135946	hgsc.bcm.edu	37	7	143701389	143701389	+	Missense_Mutation	SNP	A	A	T	rs182442940	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	61	130	0	0.544643	0	A|0.997;T|0.003	0.003	strong	.	OR6B1	60	.	NM_001005281	exon1	c.A300T	p.Q100H	GATACAACTGTAC	.	PASS	Atlas-SNP
ECE2	9718	hgsc.bcm.edu	37	3	183996068	183996068	+	Silent	SNP	C	C	T	rs3752904	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	124	117	0	1	0	C|0.451;T|0.549	0.549	strong	.	ECE2	303	.	NM_014693	exon6	c.C1071T	p.A357A	CAGTGCCGACTCT	.	PASS	Atlas-SNP
QRFPR	84109	hgsc.bcm.edu	37	4	122254014	122254014	+	Silent	SNP	A	A	G	rs55975435	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	104	224	0	0.5	0	A|0.909;G|0.091	0.091	strong	.	QRFPR	65	.	NM_198179	exon4	c.T759C	p.L253L	AGTTCGAAGCACT	.	PASS	Atlas-SNP
ZFP69B	65243	hgsc.bcm.edu	37	1	40929087	40929087	+	Silent	SNP	C	C	T	rs142494383	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	33	93	0	0.452055	0	C|0.991;T|0.009	0.009	strong	.	.	.	.	NM_023070	exon5	c.C1431T	p.C477C	TGAATGCAGTCAT	.	PASS	Atlas-SNP
OR56B1	387748	hgsc.bcm.edu	37	11	5757785	5757785	+	Silent	SNP	C	C	T	rs12792180	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	58	153	0	0.432836	0	C|0.895;T|0.105	0.105	strong	.	OR56B1	38	.	NM_001005180	exon1	c.C39T	p.S13S	CAATAGCTCCAAA	.	PASS	Atlas-SNP
CSNK1G1	53944	hgsc.bcm.edu	37	15	64508763	64508763	+	Silent	SNP	G	G	A	rs6494466	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	40	74	0	0.444444	0	G|0.548;A|0.451	0.451	strong	.	CSNK1G1	56	.	NM_022048	exon5	c.C442T	p.L148L	TTACCAGCTGGAT	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50599466	50599466	+	Missense_Mutation	SNP	C	C	A	rs2272843	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	69	91	0	0.584746	0	C|0.878;A|0.122	0.122	strong	.	MOV10L1	238	.	NM_018995	exon26	c.C3536A	p.A1179E	CTCCTGCACTGCA	.	PASS	Atlas-SNP
SHMT2	6472	hgsc.bcm.edu	37	12	57624701	57624701	+	Missense_Mutation	SNP	C	C	T	rs73338162	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	241	108	225	1	0.448133	0.00444444	C|0.970;T|0.030	0.030	strong	.	SHMT2	40	.	NM_005412	exon2	c.C149T	p.S50L	GCCTGTCGGACAG	.	PASS	Atlas-SNP
SLC20A1	6574	hgsc.bcm.edu	37	2	113404708	113404708	+	Silent	SNP	G	G	A	rs4849091	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	172	177	0	0.99422	0	G|0.602;A|0.398	0.398	strong	SLC20A1,NS,carcinoma,+2,1	SLC20A1	59	1	NM_005415	exon2	c.G303A	p.L101L	AGGGCTGCTGATG	.	PASS	Atlas-SNP
HPCAL4	51440	hgsc.bcm.edu	37	1	40150156	40150156	+	Silent	SNP	G	G	A	rs9662128	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	41	75	0	0.539474	0	G|0.645;A|0.355	0.355	strong	HPCAL4,NS,carcinoma,0,1	HPCAL4	20	1	NM_016257	exon2	c.C120T	p.S40S	GATGCCGCTGGGG	.	PASS	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	37	21	47974582	47974582	+	Silent	SNP	A	A	G	rs1107065	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	45	72	0	0.555556	0	A|0.650;G|0.348	0.348	strong	.	DIP2A	332	.	NM_015151	exon27	c.A3249G	p.T1083T	CACCACACTGCCC	.	PASS	Atlas-SNP
SLC5A9	200010	hgsc.bcm.edu	37	1	48708278	48708278	+	Silent	SNP	G	G	A	rs75538709	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	62	99	0	0.579439	0	G|0.920;A|0.080	0.080	strong	.	SLC5A9	82	.	NM_001135181	exon14	c.G1902A	p.E634E	CCAGGAGCAGCCT	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537357	88537357	+	Silent	SNP	T	T	C	rs146317878	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	78	261	2	0.38806	0.00766284	T|0.922;C|0.078	0.078	strong	DSPP,rectum,carcinoma,0,1	DSPP	174	1	NM_014208	exon5	c.T3543C	p.S1181S	TAGCAGTGATAGC	.	scavenged	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47969072	47969072	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	60	108	0	0.535714	0	.	.	none	.	PKD1L1	328	.	NM_138295	exon7	c.G789A	p.S263S	AGACTGCGATGCC	.	PASS	Atlas-SNP
INHA	3623	hgsc.bcm.edu	37	2	220439634	220439634	+	Missense_Mutation	SNP	G	G	A	rs149916845	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	74	133	0	0.503401	0	G|0.998;A|0.002	0.002	strong	INHA,NS,carcinoma,-1,1	INHA	30	1	NM_002191	exon2	c.G487A	p.V163M	GGACCCGTGGCTG	.	PASS	Atlas-SNP
OR1Q1	158131	hgsc.bcm.edu	37	9	125377087	125377087	+	Missense_Mutation	SNP	A	A	G	rs972925	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	139	165	1	0.992857	0.00606061	A|0.217;G|0.783	0.783	strong	.	OR1Q1	46	.	NM_012364	exon1	c.A71G	p.Q24R	AAGAGCAAATCCC	.	PASS	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	37	9	139327034	139327034	+	Silent	SNP	A	A	G	rs10870194	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	17	40	0	0.395349	0	A|0.612;G|0.388	0.388	strong	.	INPP5E	18	.	NM_019892	exon6	c.T1284C	p.G428G	CCCGTCACCTGCT	.	PASS	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130104062	130104062	+	Silent	SNP	T	T	C	rs10212241	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	38	81	0	0.413043	0	T|0.605;C|0.395	0.395	strong	.	COL6A5	205	.	NM_153264	exon5	c.T1716C	p.T572T	AATCACTGTTCAT	.	PASS	Atlas-SNP
VN1R4	317703	hgsc.bcm.edu	37	19	53770764	53770764	+	Missense_Mutation	SNP	G	G	A	rs74429916	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	261	122	259	1	0.467433	0.003861	.	.	weak	VN1R4,NS,carcinoma,-1,1	VN1R4	65	1	NM_173857	exon1	c.C155T	p.A52V	AAGTTGGCTACAA	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	37	3	52394055	52394055	+	Missense_Mutation	SNP	G	G	A	rs61734638	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	52	90	0	0.403101	0	G|0.984;A|0.016	0.016	strong	.	DNAH1	534	.	NM_015512	exon27	c.G4531A	p.V1511M	GAGAACGTGGTCA	.	PASS	Atlas-SNP
KIAA0195	9772	hgsc.bcm.edu	37	17	73493217	73493217	+	Silent	SNP	G	G	A	rs372068615		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	62	138	0	0.430556	0	.	.	weak	.	KIAA0195	102	.	NM_014738	exon26	c.G3345A	p.L1115L	CCAGCTGCCGCCA	.	PASS	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	37	7	24758795	24758795	+	Silent	SNP	T	T	C	rs876305	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	80	0	1	0	T|0.394;C|0.606	0.606	strong	.	DFNA5	51	.	NM_001127453	exon4	c.A447G	p.E149E	CCTTCCTTCCAGC	.	PASS	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56088786	56088786	+	Silent	SNP	A	A	T	rs202027697	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	22	149	0	0.144737	0	A|0.749;T|0.251	0.251	strong	.	PSPH	23	.	NM_004577	exon4	c.T120A	p.V40V	GTCCTCAACGCCA	.	PASS	Atlas-SNP
ARSB	411	hgsc.bcm.edu	37	5	78181477	78181477	+	Missense_Mutation	SNP	C	C	T	rs1065757	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	44	108	0	0.463158	0	T|0.311;C|0.689	0.311	strong	.	ARSB	47	.	NM_198709	exon6	c.G1072A	p.V358M	GCTTCACGAGTGT	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	871135	871135	+	Silent	SNP	A	A	G	rs1683569	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	11	33	0	0.458333	0	A|0.743;G|0.257	0.257	strong	MED16,NS,carcinoma,0,1	MED16	61	1	NM_005481	exon13	c.T2217C	p.V739V	GCGGCTAACCAGG	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104640098	104640098	+	Silent	SNP	G	G	A	rs61745565	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	64	23	0	1	0	G|0.981;A|0.019	0.019	strong	.	KIF26A	84	.	NM_015656	exon10	c.G1923A	p.A641A	GGCGGCGGCTGGC	.	PASS	Atlas-SNP
OR4K17	390436	hgsc.bcm.edu	37	14	20586042	20586042	+	Missense_Mutation	SNP	G	G	C	rs8005245	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	83	164	0	0.474286	0	G|0.599;C|0.401	0.401	strong	.	OR4K17	58	.	NM_001004715	exon1	c.G477C	p.K159N	TTGTAAGCCCCTA	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104066461	104066461	+	Missense_Mutation	SNP	A	A	G	rs2615542	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	55	68	0	0.544554	0	A|0.848;G|0.152	0.152	strong	CENPE,NS,carcinoma,0,1	CENPE	253	1	NM_001813	exon32	c.T4603C	p.F1535L	TATTAAATTGTTC	.	PASS	Atlas-SNP
MTR	4548	hgsc.bcm.edu	37	1	237048500	237048500	+	Missense_Mutation	SNP	A	A	G	rs1805087	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	25	72	0	0.416667	0	A|0.786;G|0.214	0.214	strong	MTR,rectum,carcinoma,+1,1	MTR	127	1	NM_000254	exon26	c.A2756G	p.D919G	GACAGGACCATTA	.	PASS	Atlas-SNP
LILRA4	23547	hgsc.bcm.edu	37	19	54849481	54849481	+	Silent	SNP	T	T	G	rs7256494	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	121	128	1	0.98374	0.0078125	T|0.611;G|0.389	0.389	strong	LILRA4,colon,carcinoma,0,4	LILRA4	91	4	NM_012276	exon4	c.A381C	p.A127A	TGGCAGTGCGGAC	.	PASS	Atlas-SNP
BPIFB6	128859	hgsc.bcm.edu	37	20	31622083	31622083	+	Missense_Mutation	SNP	G	G	A	rs2070317	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	54	105	0	0.55102	0	G|0.480;A|0.520	0.520	strong	.	.	.	.	NM_174897	exon3	c.G289A	p.V97I	ATGACCGTCACTG	.	PASS	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	37	7	105662690	105662690	+	Silent	SNP	T	T	C	rs10258293	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	339	339	348	0	1	0	T|0.839;C|0.161	0.161	strong	.	CDHR3	153	.	NM_152750	exon14	c.T1872C	p.N624N	TTCCAATGTCACA	.	PASS	Atlas-SNP
ZNF571	51276	hgsc.bcm.edu	37	19	38056763	38056763	+	Missense_Mutation	SNP	C	C	G	rs8111790	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	31	71	0	0.516667	0	C|0.737;G|0.263	0.263	strong	ZNF571,colon,carcinoma,0,1	ZNF571	54	1	NM_016536	exon4	c.G567C	p.Q189H	ACCAGTCTGAATT	.	PASS	Atlas-SNP
TRABD	80305	hgsc.bcm.edu	37	22	50632869	50632869	+	Silent	SNP	C	C	T	rs4838813	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	66	129	0	0.488889	0	C|0.956;T|0.044	0.044	strong	.	TRABD	21	.	NM_025204	exon4	c.C213T	p.D71D	TGAGGACGGGAGC	.	PASS	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	37	13	101720300	101720300	+	Silent	SNP	T	T	G	rs1289556	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	62	100	0	0.48062	0	T|0.558;G|0.442	0.442	strong	.	NALCN	431	.	NM_052867	exon39	c.A4416C	p.I1472I	CCATATTATTTGA	.	PASS	Atlas-SNP
GPR18	2841	hgsc.bcm.edu	37	13	99907568	99907568	+	Missense_Mutation	SNP	G	G	T	rs41279138	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	72	111	0	0.533333	0	G|0.997;T|0.003	0.003	strong	.	GPR18	23	.	NM_001098200	exon2	c.C559A	p.L187M	GGTTCAGCACGTT	.	PASS	Atlas-SNP
PLXDC1	57125	hgsc.bcm.edu	37	17	37243927	37243927	+	Silent	SNP	A	A	G	rs12602945	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	25	64	1	0.454545	0.015625	A|0.747;G|0.253	0.253	strong	PLXDC1,NS,carcinoma,0,1	PLXDC1	45	1	NM_020405	exon8	c.T840C	p.Y280Y	GCGGTGATATTCA	.	scavenged	Atlas-SNP
ABHD8	79575	hgsc.bcm.edu	37	19	17412399	17412399	+	Silent	SNP	G	G	A	rs11086067	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	50	39	0	1	0	G|0.778;A|0.222	0.222	strong	.	ABHD8	26	.	NM_024527	exon2	c.C27T	p.I9I	ACAGAAGATACCG	.	PASS	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	37	12	4553332	4553332	+	Silent	SNP	A	A	G	rs2241280	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	88	170	0	0.494382	0	A|0.554;G|0.446	0.446	strong	FGF6,NS,carcinoma,-2,1	FGF6	40	1	NM_020996	exon2	c.T417C	p.V139V	CATGGCAACGAAG	.	PASS	Atlas-SNP
C7orf10	79783	hgsc.bcm.edu	37	7	40314165	40314165	+	Silent	SNP	G	G	A	rs12669315	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	167	217	1	0.994048	0.00460829	G|0.683;A|0.317	0.317	strong	.	C7orf10	99	.	NM_001193313	exon8	c.G651A	p.L217L	TGGCCTGTATGCA	.	PASS	Atlas-SNP
PRIMA1	145270	hgsc.bcm.edu	37	14	94245652	94245652	+	Silent	SNP	C	C	T	rs4900195	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	27	38	0	0.54	0	C|0.579;T|0.421	0.421	strong	PRIMA1,rectum,carcinoma,0,1	PRIMA1	21	1	NM_178013	exon3	c.G99A	p.T33T	ACCATGCGTCACC	.	PASS	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	37	10	50732280	50732280	+	Missense_Mutation	SNP	C	C	T	rs2228528	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	78	154	0	0.52349	0	C|0.794;T|0.206	0.206	strong	.	ERCC6	162	.	NM_000124	exon5	c.T1196A	p.L399H	TCAGTACCATCTC	.	PASS	Atlas-SNP
CROCC	9696	hgsc.bcm.edu	37	1	17275337	17275337	+	Missense_Mutation	SNP	C	C	T	rs143866013	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	59	347	2	0.202749	0.00576369	C|0.900;T|0.100	0.100	strong	CROCC,NS,haematopoietic_neoplasm,0,6	CROCC	185	6	NM_014675	exon19	c.C2752T	p.R918W	GTGCAACGGCAGC	.	scavenged	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	37	9	139298580	139298580	+	Missense_Mutation	SNP	C	C	T	rs1131992	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	90	192	0	0.439024	0	C|0.878;T|0.122	0.122	strong	.	SDCCAG3	41	.	NM_001039707	exon9	c.G1135A	p.V379M	TCACCACGGTCAG	.	PASS	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	37	14	104481083	104481083	+	Silent	SNP	T	T	C	rs11160779	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	32	71	0	0.52459	0	T|0.678;C|0.322	0.322	strong	TDRD9_ENST00000409874,NS,carcinoma,-1,4	TDRD9	175	4	NM_153046	exon21	c.T2128C	p.L710L	GAAGAATTGAAGA	.	PASS	Atlas-SNP
TULP3	7289	hgsc.bcm.edu	37	12	3049698	3049698	+	Missense_Mutation	SNP	T	T	C	rs998814	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	47	109	0	0.465347	0	A|0.008;C|0.256	0.256	strong	.	TULP3	45	.	NM_001160408	exon12	c.T1312C	p.C438R	CCAGAATGTATCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417225	105417225	+	Silent	SNP	C	C	G	rs2894635	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	102	281	0	0.962264	0	C|0.822;G|0.178	0.178	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G4563C	p.P1521P	CACCTTCGGCGCA	.	PASS	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56405046	56405046	+	Missense_Mutation	SNP	C	C	T	rs61743284	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	37	88	0	0.486842	0	C|0.982;T|0.018	0.018	strong	.	BZRAP1	287	.	NM_024418	exon1	c.G236A	p.G79E	TCTGCTCCTTCAG	.	PASS	Atlas-SNP
ENTPD7	57089	hgsc.bcm.edu	37	10	101451259	101451259	+	Missense_Mutation	SNP	T	T	C	rs11190245	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	41	80	0	0.561644	0	T|0.752;C|0.248	0.248	strong	.	ENTPD7	44	.	NM_020354	exon8	c.T827C	p.V276A	CCTCTGTCCTTCC	.	PASS	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	37	15	100692845	100692845	+	Missense_Mutation	SNP	A	A	G	rs28567966	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	25	82	0	0.337838	0	A|0.840;G|0.160	0.160	strong	.	ADAMTS17	127	.	NM_139057	exon10	c.T1445C	p.M482T	GCATTCATGCCAA	.	PASS	Atlas-SNP
WFIKKN2	124857	hgsc.bcm.edu	37	17	48917384	48917384	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	46	105	0	0.40708	0	.	.	none	.	WFIKKN2	69	.	NM_175575	exon2	c.G735A	p.K245K	GGAGAAGCAGTTG	.	PASS	Atlas-SNP
MYBPC3	4607	hgsc.bcm.edu	37	11	47371442	47371442	+	Silent	SNP	G	G	A	rs11570051	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	32	90	0	0.333333	0	G|0.976;A|0.024	0.024	strong	.	MYBPC3	102	.	NM_000256	exon5	c.C537T	p.A179A	GGCGCCGGCCACG	.	PASS	Atlas-SNP
EFS	10278	hgsc.bcm.edu	37	14	23829164	23829164	+	Missense_Mutation	SNP	G	G	A	rs2231805	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	10	32	0	0.416667	0	G|0.872;A|0.128	0.128	strong	EFS,NS,carcinoma,0,2	EFS	37	2	NM_005864	exon4	c.C523T	p.R175W	CAACCCGGGTCAG	.	PASS	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	37	1	42050366	42050366	+	Missense_Mutation	SNP	C	C	T	rs2146315	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	61	105	0	0.516949	0	C|0.726;T|0.274	0.274	strong	HIVEP3,colon,carcinoma,0,1	HIVEP3	235	1	NM_024503	exon4	c.G103A	p.V35I	ATGGGACGCTGGA	.	PASS	Atlas-SNP
EPYC	1833	hgsc.bcm.edu	37	12	91363909	91363909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	47	85	0	0.516484	0	.	.	none	.	EPYC	35	.	NM_004950	exon6	c.A710G	p.Y237C	AGATCATACATGT	.	PASS	Atlas-SNP
TTC5	91875	hgsc.bcm.edu	37	14	20757804	20757804	+	Silent	SNP	C	C	A	rs3737220	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	59	74	0	1	0	C|0.873;A|0.127	0.127	strong	TTC5,NS,carcinoma,-1,3	TTC5	34	3	NM_138376	exon10	c.G1305T	p.S435S	TGGTCGCGATGCC	.	PASS	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	37	14	65054858	65054858	+	Silent	SNP	T	T	C	rs723594	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	45	85	0	0.511364	0	T|0.940;C|0.060	0.060	strong	.	.	.	.	NM_172365	exon11	c.T927C	p.A309A	AAAAGCTATCAAC	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124201699	124201699	+	Silent	SNP	C	C	T	rs61740058	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	88	210	0	0.52071	0	C|0.979;T|0.021	0.021	strong	.	KALRN	556	.	NM_003947	exon28	c.C4230T	p.Y1410Y	TTCCTACCTAATT	.	PASS	Atlas-SNP
CPNE8	144402	hgsc.bcm.edu	37	12	39299249	39299249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	27	66	0	0.428571	0	.	.	none	.	CPNE8	66	.	NM_153634	exon1	c.G88A	p.V30M	AGGACACGGACAC	.	PASS	Atlas-SNP
CARD9	64170	hgsc.bcm.edu	37	9	139266405	139266405	+	Silent	SNP	G	G	A	rs10781499	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	69	135	0	0.472603	0	G|0.634;A|0.366	0.366	strong	CARD9,NS,carcinoma,0,1	CARD9	47	1	NM_052813	exon2	c.C126T	p.P42P	ATCATCGGGGTTC	.	PASS	Atlas-SNP
UBC	7316	hgsc.bcm.edu	37	12	125397364	125397364	+	Silent	SNP	A	A	G	rs8963	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	477	192	449	0	0.402516	0	A|0.537;G|0.463	0.463	strong	.	UBC	79	.	NM_021009	exon2	c.T954C	p.T318T	TTCGAGAGTGATG	.	PASS	Atlas-SNP
ACSM4	341392	hgsc.bcm.edu	37	12	7463241	7463241	+	Silent	SNP	A	A	T	rs7968241	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	39	57	0	0.619048	0	A|0.570;T|0.430	0.430	strong	.	ACSM4	98	.	NM_001080454	exon3	c.A519T	p.P173P	GGCCCCAGCGGTG	.	PASS	Atlas-SNP
OGFOD1	55239	hgsc.bcm.edu	37	16	56485554	56485554	+	Silent	SNP	C	C	G	rs11076155	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	25	37	0	0.694444	0	C|0.948;G|0.052	0.052	strong	.	OGFOD1	31	.	NM_018233	exon1	c.C30G	p.G10G	GCCCGGCCCAGCC	.	PASS	Atlas-SNP
EDN1	1906	hgsc.bcm.edu	37	6	12296255	12296255	+	Missense_Mutation	SNP	G	G	T	rs5370	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	41	83	0	0.488095	0	G|0.787;T|0.213	0.213	strong	EDN1,NS,carcinoma,0,1	EDN1	23	1	NM_001955	exon5	c.G594T	p.K198N	AGGCAAGCCCTCC	.	PASS	Atlas-SNP
GET4	51608	hgsc.bcm.edu	37	7	930689	930689	+	Silent	SNP	C	C	T	rs13171	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	310	152	307	0	0.490323	0	C|0.831;T|0.169	0.169	strong	GET4,NS,carcinoma,0,1	GET4	17	1	NM_015949	exon5	c.C591T	p.A197A	CGTGGCCCAGGCC	.	PASS	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	37	19	1360575	1360575	+	Missense_Mutation	SNP	G	G	A	rs3826942	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	88	86	0	0.988764	0	G|0.297;A|0.703	0.703	strong	.	MUM1	54	.	NM_032853	exon5	c.G658A	p.G220R	AGGGGAGGAAACT	.	PASS	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	37	7	7495735	7495735	+	Missense_Mutation	SNP	T	T	C	rs55745506	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	39	70	0	0.458824	0	T|0.729;C|0.271	0.271	strong	.	COL28A1	113	.	NM_001037763	exon16	c.A1311G	p.I437M	AGGTCCTATATCC	.	PASS	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	37	7	150768280	150768280	+	Missense_Mutation	SNP	G	G	A	rs201086697		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	48	132	0	0.45283	0	.	.	weak	SLC4A2,NS,carcinoma,0,1	SLC4A2	98	1	NM_003040	exon13	c.G1871A	p.R624H	TGCTGCGCTCTGT	.	PASS	Atlas-SNP
NCLN	56926	hgsc.bcm.edu	37	19	3207422	3207422	+	Silent	SNP	T	T	C	rs3816054	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	44	86	0	0.505747	0	T|0.820;C|0.180	0.180	strong	.	NCLN	27	.	NM_020170	exon14	c.T1587C	p.A529A	CCTGGCTGTTGGC	.	PASS	Atlas-SNP
PNKD	25953	hgsc.bcm.edu	37	2	219205471	219205471	+	Silent	SNP	G	G	A	rs34014804	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	62	100	0	0.466165	0	G|0.939;A|0.061	0.061	strong	.	PNKD	58	.	NM_015488	exon5	c.G486A	p.G162G	GGAAGGGGTCACC	.	PASS	Atlas-SNP
CRYBG3	131544	hgsc.bcm.edu	37	3	97634465	97634465	+	Missense_Mutation	SNP	A	A	G	rs17302349	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	57	126	0	0.456	0	A|0.994;G|0.006	0.006	strong	.	CRYBG3	86	.	NM_153605	exon17	c.A8126G	p.Y2709C	TCCTCTATTACCA	.	PASS	Atlas-SNP
CDKAL1	54901	hgsc.bcm.edu	37	6	21065450	21065450	+	Silent	SNP	A	A	G	rs56087852	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	31	67	0	0.455882	0	A|0.809;G|0.191	0.191	strong	CDKAL1,NS,carcinoma,0,1	CDKAL1	55	1	NM_017774	exon12	c.A1227G	p.P409P	AGTTCCAGCACAA	.	PASS	Atlas-SNP
CR1	1378	hgsc.bcm.edu	37	1	207787796	207787796	+	Missense_Mutation	SNP	T	T	C	rs61822976	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	295	12	239	0	0.040678	0	.	.	weak	CR1_ENST00000367049,NS,carcinoma,0,4	CR1	354	4	NM_000651	exon40	c.T6623C	p.M2208T	CTGGAATGAAAGC	.	PASS	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	37	1	201175274	201175274	+	Missense_Mutation	SNP	A	A	G	rs9651057	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	47	87	0	0.474747	0	A|0.571;G|0.429	0.429	strong	.	IGFN1	220	.	NM_001164586	exon12	c.A1253G	p.Q418R	GAGCCCAGGCATC	.	PASS	Atlas-SNP
NME8	51314	hgsc.bcm.edu	37	7	37936530	37936530	+	Silent	SNP	T	T	C	rs3213975	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	82	100	0	0.535948	0	T|0.770;C|0.230	0.230	strong	.	.	.	.	NM_016616	exon17	c.T1603C	p.L535L	AGACGATTGATGG	.	PASS	Atlas-SNP
OR8G5	219865	hgsc.bcm.edu	37	11	124135677	124135677	+	Missense_Mutation	SNP	A	A	G	rs10893192	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	124	282	0	0.429066	0	A|0.945;G|0.055	0.055	strong	.	.	.	.	NM_001005198	exon1	c.A955G	p.M319V	GTGCCCATGCTGA	.	PASS	Atlas-SNP
SPNS3	201305	hgsc.bcm.edu	37	17	4352636	4352636	+	Missense_Mutation	SNP	G	G	A	rs34457931	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	37	50	0	0.552239	0	G|0.906;A|0.094	0.094	strong	.	SPNS3	52	.	NM_182538	exon7	c.G877A	p.G293R	GTTCACGGGCTGC	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62254989	62254989	+	Missense_Mutation	SNP	T	T	C	rs3784635	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	84	146	0	0.464088	0	T|0.948;C|0.052	0.052	strong	.	VPS13C	506	.	NM_020821	exon33	c.A3394G	p.I1132V	CAATAATATTTTC	.	PASS	Atlas-SNP
POLN	353497	hgsc.bcm.edu	37	4	2210065	2210065	+	Missense_Mutation	SNP	C	C	A	rs2353552	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	44	84	0	0.488889	0	C|0.924;A|0.076	0.076	strong	.	POLN	82	.	NM_181808	exon3	c.G363T	p.Q121H	ATTATACTGTGGA	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	37	19	22941617	22941617	+	Missense_Mutation	SNP	T	T	C	rs58653025	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	15	41	1	0.416667	0.0243902	T|0.811;C|0.189	0.189	strong	ZNF99,NS,carcinoma,0,1	ZNF99	273	1	NM_001080409	exon4	c.A1094G	p.E365G	TTCTCTTCAGTAT	.	scavenged	Atlas-SNP
BSPH1	100131137	hgsc.bcm.edu	37	19	48495304	48495304	+	Missense_Mutation	SNP	G	G	A	rs60213124	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	43	105	0	0.413462	0	G|0.818;A|0.182	0.182	strong	BSPH1,NS,carcinoma,0,1	BSPH1	6	1	NM_001128326	exon1	c.C35T	p.T12M	TTTCGCGTCGTTT	.	PASS	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	37	1	223116474	223116474	+	Missense_Mutation	SNP	G	G	T	rs2789975	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	84	114	0	0.57931	0	G|0.844;T|0.156	0.156	strong	.	DISP1	145	.	NM_032890	exon4	c.G309T	p.E103D	TCCCGAGGCTGGC	.	PASS	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	37	2	48921375	48921375	+	Missense_Mutation	SNP	T	T	C	rs2293275	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	100	215	0	0.537634	0	T|0.446;C|0.554	0.554	strong	.	LHCGR	154	.	NM_000233	exon10	c.A935G	p.N312S	TTGTTATTCACTT	.	PASS	Atlas-SNP
RNF139	11236	hgsc.bcm.edu	37	8	125499134	125499134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	244	4	226	0	0.0163934	0	.	.	none	RNF139,colon,carcinoma,+1,1	RNF139	57	1	NM_007218	exon2	c.C1244T	p.A415V	ACTATGCACTAAA	.	scavenged	Atlas-SNP
CCDC84	338657	hgsc.bcm.edu	37	11	118886117	118886117	+	Silent	SNP	C	C	T	rs10111	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	76	141	0	0.402116	0	C|0.763;T|0.237	0.237	strong	.	CCDC84	21	.	NM_198489	exon10	c.C906T	p.R302R	TGGCCGCGTCTGG	.	PASS	Atlas-SNP
ANKRD52	283373	hgsc.bcm.edu	37	12	56638455	56638455	+	Silent	SNP	G	G	A	rs201117129	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	112	189	0	0.622222	0	G|0.998;A|0.002	0.002	strong	.	ANKRD52	81	.	NM_173595	exon24	c.C2703T	p.N901N	CTGCCCGTTCTCA	.	PASS	Atlas-SNP
NAGK	55577	hgsc.bcm.edu	37	2	71304738	71304738	+	Silent	SNP	G	G	A	rs1043701	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	62	97	0	0.525424	0	G|0.935;A|0.065	0.065	strong	.	NAGK	34	.	NM_017567	exon9	c.G954A	p.V318V	CTCTGTGTGGAAG	.	PASS	Atlas-SNP
DDX53	168400	hgsc.bcm.edu	37	X	23019317	23019317	+	Missense_Mutation	SNP	G	G	T	rs5925720	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	43	37	0	1	0	G|0.902;T|0.098	0.098	strong	.	DDX53	76	.	NM_182699	exon1	c.G1143T	p.M381I	TAAAATGCTGGAT	.	PASS	Atlas-SNP
MTRR	4552	hgsc.bcm.edu	37	5	7893005	7893005	+	Silent	SNP	C	C	T	rs34172797	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	39	82	0	0.481481	0	C|0.981;T|0.019	0.019	strong	.	MTRR	74	.	NM_024010	exon11	c.C1617T	p.S539S	AGACAGCGGGAAA	.	PASS	Atlas-SNP
FAM86B1	85002	hgsc.bcm.edu	37	8	12044264	12044264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	559	35	533	0	0.0626118	0	.	.	none	FAM86B1,NS,carcinoma,+2,1	FAM86B1	7	1	NM_001083537	exon4	c.G319A	p.A107T	GGGCGGCATCCCA	.	scavenged	Atlas-SNP
ZC3H3	23144	hgsc.bcm.edu	37	8	144522388	144522388	+	Missense_Mutation	SNP	A	A	T	rs2272753	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	38	90	0	0.44186	0	A|0.879;T|0.121	0.121	strong	.	ZC3H3	75	.	NM_015117	exon11	c.T2638A	p.S880T	GGGATGAGGAGGA	.	PASS	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84611367	84611367	+	Missense_Mutation	SNP	G	G	C	rs34047645	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	44	0	0.464286	0	G|0.892;C|0.108	0.108	strong	ADAMTSL3,NS,carcinoma,-2,2	ADAMTSL3	290	2	NM_207517	exon18	c.G2137C	p.G713R	TCTTGGGGGCCCT	.	PASS	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	37	1	223284599	223284599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	77	177	0	0.427778	0	.	.	none	TLR5,NS,carcinoma,0,1	TLR5	86	1	NM_003268	exon6	c.A1775G	p.N592S	AGCCAATTGATAA	.	PASS	Atlas-SNP
PPP2R1B	5519	hgsc.bcm.edu	37	11	111608216	111608216	+	Missense_Mutation	SNP	T	T	A	rs61756429	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	36	85	0	0.423529	0	T|0.992;A|0.008	0.008	strong	.	PPP2R1B	44	.	NM_181699	exon15	c.A1867T	p.N623Y	AGTGGTTCTTGTC	.	PASS	Atlas-SNP
FRMD7	90167	hgsc.bcm.edu	37	X	131212512	131212512	+	Silent	SNP	A	A	G	rs5977623	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	105	0	1	0	A|0.670;0|0.003	.	strong	.	FRMD7	69	.	NM_194277	exon12	c.T1533C	p.I511I	TGCTCTAATTGGG	.	PASS	Atlas-SNP
ZGPAT	84619	hgsc.bcm.edu	37	20	62339959	62339959	+	Silent	SNP	C	C	G	rs148155917	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	57	109	0	0.513514	0	C|1.000;T|0.000	.	alt	.	ZGPAT	57	.	NM_032527	exon2	c.C27G	p.A9A	GTCGGCCTTGCAG	.	PASS	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	37	5	236617	236617	+	Silent	SNP	G	G	T	rs200223188	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	310	7	324	1	0.0225806	0.00308642	A|0.002;G|0.988;T|0.011	0.011	strong	SDHA,NS,carcinoma,0,1	SDHA	80	1	NM_004168	exon10	c.G1335T	p.S445S	TGCCTCGGTACAT	.	scavenged	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36222857	36222857	+	Missense_Mutation	SNP	C	C	T	rs16970649	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	49	91	0	0.480392	0	C|0.902;T|0.098	0.098	strong	.	MLL4	229	.	NM_014727	exon27	c.C5486T	p.P1829L	TTGTCCCTGGAGC	.	PASS	Atlas-SNP
PNPO	55163	hgsc.bcm.edu	37	17	46023694	46023694	+	Silent	SNP	G	G	A	rs4378657	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	23	47	0	0.433962	0	G|0.940;A|0.060	0.060	strong	.	PNPO	18	.	NM_018129	exon6	c.G552A	p.L184L	GTATCTGAGAAAG	.	PASS	Atlas-SNP
MCAM	4162	hgsc.bcm.edu	37	11	119183067	119183067	+	Silent	SNP	C	C	T	rs35607515	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	104	215	1	0.448276	0.00465116	C|0.973;T|0.027	0.027	strong	MCAM,rectum,carcinoma,-2,4	MCAM	57	4	NM_006500	exon8	c.G933A	p.R311R	TTCCTTCCGGGCA	.	scavenged	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	37	7	55268916	55268916	+	Silent	SNP	C	C	T	rs2293347	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	72	135	0	0.455696	0	C|0.894;T|0.106	0.106	strong	.	EGFR	20426	.	NM_005228	exon25	c.C2982T	p.D994D	TACAGACTCCAAC	.	PASS	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	37	10	50534862	50534862	+	Silent	SNP	T	T	C	rs12411843	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	29	62	0	0.408451	0	T|0.690;C|0.310	0.310	strong	.	C10orf71	179	.	NM_001135196	exon3	c.T4272C	p.D1424D	CACTGATGACCTA	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537384	88537384	+	Silent	SNP	T	T	C	rs201295377	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	91	259	0	0.43128	0	.	.	weak	DSPP,rectum,carcinoma,+1,1	DSPP	174	1	NM_014208	exon5	c.T3570C	p.S1190S	TAGCAGTGACAGC	.	PASS	Atlas-SNP
DHX36	170506	hgsc.bcm.edu	37	3	154018887	154018887	+	Missense_Mutation	SNP	G	G	C	rs9438	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	74	164	0	0.435294	0	G|0.613;C|0.387	0.387	strong	.	DHX36	98	.	NM_020865	exon10	c.C1247G	p.S416C	AACTGGGATCTGT	.	PASS	Atlas-SNP
MADD	8567	hgsc.bcm.edu	37	11	47306585	47306585	+	Missense_Mutation	SNP	G	G	A	rs1051006	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	26	59	0	0.38806	0	G|0.733;A|0.267	0.267	strong	.	MADD	172	.	NM_130474	exon13	c.G2251A	p.V751M	TCGAACGTGGACA	.	PASS	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228855866	228855866	+	Missense_Mutation	SNP	G	G	C	rs16824283	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	58	125	0	0.446154	0	G|0.803;C|0.197	0.197	strong	SPHKAP_ENST00000392056,colon,carcinoma,0,2	SPHKAP	750	2	NM_001142644	exon11	c.C4809G	p.S1603R	CTGGGGGCTGGCT	.	PASS	Atlas-SNP
GALNS	2588	hgsc.bcm.edu	37	16	88902183	88902183	+	Silent	SNP	G	G	A	rs1064315	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	91	127	0	0.978495	0	G|0.715;A|0.285	0.285	strong	.	GALNS	37	.	NM_000512	exon7	c.C708T	p.H236H	GGGTGCGTGCGTG	.	PASS	Atlas-SNP
OR13J1	392309	hgsc.bcm.edu	37	9	35870001	35870001	+	Missense_Mutation	SNP	T	T	C	rs7044405	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	132	120	1	1	0.00833333	T|0.347;C|0.653	0.653	strong	OR13J1,colon,carcinoma,-1,1	OR13J1	37	1	NM_001004487	exon1	c.A398G	p.H133R	AGCACGTGGTACC	.	PASS	Atlas-SNP
APOL5	80831	hgsc.bcm.edu	37	22	36122433	36122433	+	Silent	SNP	T	T	C	rs16996023	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	28	74	0	0.35	0	T|0.960;C|0.040	0.040	strong	.	APOL5	45	.	NM_030642	exon3	c.T318C	p.F106F	ATATTTTCCTTTG	.	PASS	Atlas-SNP
DNAJC16	23341	hgsc.bcm.edu	37	1	15892415	15892415	+	Silent	SNP	A	A	C	rs2236215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	58	162	0	0.376623	0	A|0.668;C|0.332	0.332	strong	.	DNAJC16	59	.	NM_015291	exon12	c.A1600C	p.R534R	TTTAGGAGGGAAA	.	PASS	Atlas-SNP
TNFRSF11B	4982	hgsc.bcm.edu	37	8	119938782	119938782	+	Silent	SNP	T	T	C	rs2228568	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	63	148	0	0.372781	0	T|0.902;C|0.098	0.098	strong	.	TNFRSF11B	87	.	NM_002546	exon4	c.A768G	p.L256L	TTTCCATAACTTC	.	PASS	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	37	17	39037000	39037000	+	Missense_Mutation	SNP	G	G	A	rs143378689	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	38	93	0	0.475	0	G|0.996;A|0.004	0.004	strong	.	KRT20	38	.	NM_019010	exon3	c.C496T	p.R166C	TTAGACGTATTCC	.	PASS	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	37	10	134659612	134659612	+	Silent	SNP	G	G	A	rs143293571	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	38	99	0	0.426966	0	G|0.999;A|0.001	0.001	strong	.	TTC40	100	.	NM_001200049	exon44	c.C6387T	p.T2129T	GGTGGTGGTCCTG	.	PASS	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	37	17	21318770	21318770	+	Missense_Mutation	SNP	G	G	A	rs3752033	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	31	135	0	0.19375	0	G|0.743;A|0.257	0.257	strong	.	.	.	.	NM_001194958	exon3	c.G116A	p.R39Q	ACACGCGGCGCAG	.	PASS	Atlas-SNP
AGBL4	84871	hgsc.bcm.edu	37	1	49511424	49511424	+	Silent	SNP	A	A	G	rs3934240	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	52	105	0	0.460177	0	A|0.796;G|0.204	0.204	strong	AGBL4,NS,carcinoma,0,1	AGBL4	54	1	NM_032785	exon5	c.T426C	p.H142H	CTTCCTATGGTCC	.	PASS	Atlas-SNP
ANKEF1	63926	hgsc.bcm.edu	37	20	10030452	10030452	+	Missense_Mutation	SNP	G	G	A	rs524625	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	22	39	0	0.488889	0	G|0.769;A|0.231	0.231	strong	.	.	.	.	NM_198798	exon6	c.G1235A	p.G412E	CGTATGGACCTAA	.	PASS	Atlas-SNP
ARHGAP4	393	hgsc.bcm.edu	37	X	153174934	153174934	+	Missense_Mutation	SNP	T	T	G	rs145982906	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	118	128	1	1	0.0078125	T|0.993;G|0.007	0.007	strong	.	ARHGAP4	103	.	NM_001164741	exon21	c.A2590C	p.S864R	CGGGACTGCTCCC	.	PASS	Atlas-SNP
PRCP	5547	hgsc.bcm.edu	37	11	82564294	82564294	+	Missense_Mutation	SNP	T	T	G	rs2229437	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	113	240	0	0.448413	0	T|0.854;G|0.146;A|0.000	0.146	strong	.	PRCP	69	.	NM_199418	exon4	c.A399C	p.E133D	TTTCAGTTCCTCA	.	PASS	Atlas-SNP
IQCB1	9657	hgsc.bcm.edu	37	3	121507231	121507231	+	Missense_Mutation	SNP	A	A	T	rs41441546		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	114	210	0	0.537736	0	.	.	weak	.	IQCB1	50	.	NM_001023570	exon12	c.T1178A	p.I393N	TGGATAATCAGTG	.	PASS	Atlas-SNP
ADAM33	80332	hgsc.bcm.edu	37	20	3650234	3650234	+	Missense_Mutation	SNP	A	A	G	rs2280091	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	53	127	0	0.456897	0	A|0.871;G|0.129	0.129	strong	.	ADAM33	76	.	NM_025220	exon20	c.T2291C	p.M764T	AACTCCATGGGGT	.	PASS	Atlas-SNP
KRT35	3886	hgsc.bcm.edu	37	17	39633354	39633354	+	Missense_Mutation	SNP	C	C	T	rs12451652	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	43	79	0	0.483146	0	C|0.825;T|0.175	0.175	strong	.	KRT35	58	.	NM_002280	exon7	c.G1322A	p.C441Y	GGGCTGCAGTTTG	.	PASS	Atlas-SNP
RTP2	344892	hgsc.bcm.edu	37	3	187416634	187416634	+	Silent	SNP	C	C	A	rs61732384	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	225	296	1	0.892857	0.00337838	C|0.468;A|0.532	0.532	strong	.	RTP2	38	.	NM_001004312	exon2	c.G330T	p.L110L	CTCCTCCAGCATG	.	PASS	Atlas-SNP
ACADS	35	hgsc.bcm.edu	37	12	121176083	121176083	+	Missense_Mutation	SNP	G	G	A	rs1799958	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	57	105	0	0.542857	0	G|0.805;A|0.195	0.195	strong	.	ACADS	39	.	NM_000017	exon6	c.G625A	p.G209S	TTTCAGGGCATCA	.	PASS	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	37	22	37906262	37906262	+	Missense_Mutation	SNP	C	C	T	rs9610775	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	19	19	30	0	1	0	C|0.806;T|0.194	0.194	strong	.	CARD10	55	.	NM_014550	exon4	c.G866A	p.R289Q	GTCAGCCGCTGGT	.	PASS	Atlas-SNP
SRCIN1	80725	hgsc.bcm.edu	37	17	36700163	36700163	+	Silent	SNP	C	C	T	rs35262222	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	43	67	0	0.544304	0	C|0.926;T|0.074	0.074	strong	.	SRCIN1	66	.	NM_025248	exon18	c.G3312A	p.P1104P	GGCCCCCGGAGTC	.	PASS	Atlas-SNP
TOPBP1	11073	hgsc.bcm.edu	37	3	133342218	133342218	+	Silent	SNP	C	C	T	rs4854738	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	54	150	0	0.388489	0	C|0.871;T|0.129	0.129	strong	.	TOPBP1	218	.	NM_007027	exon18	c.G3012A	p.V1004V	ATCTTGCACTGCG	.	PASS	Atlas-SNP
TLK2	11011	hgsc.bcm.edu	37	17	60683503	60683503	+	Silent	SNP	A	A	G	rs8078132	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	29	85	0	0.337209	0	A|0.486;G|0.514	0.514	strong	.	TLK2	223	.	NM_006852	exon20	c.A1872G	p.P624P	ACCACCAGAGTGT	.	PASS	Atlas-SNP
SMARCAD1	56916	hgsc.bcm.edu	37	4	95170839	95170839	+	Missense_Mutation	SNP	G	G	A	rs11722476	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	184	219	0	0.994595	0	G|0.609;A|0.391	0.391	strong	SMARCAD1,NS,carcinoma,0,2	SMARCAD1	97	2	NM_001128429	exon7	c.G740A	p.S247N	CTAGCAGTAATTG	.	PASS	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	37	2	206480393	206480393	+	Silent	SNP	C	C	T	rs17682782	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	98	236	0	0.478049	0	C|0.933;T|0.067	0.067	strong	.	PARD3B	314	.	NM_152526	exon22	c.C3288T	p.D1096D	ACAAGACGTTCCG	.	PASS	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	37	17	12898295	12898295	+	Silent	SNP	T	T	C	rs17552022	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	66	182	0	0.4	0	T|0.921;C|0.079	0.079	strong	.	ELAC2	48	.	NM_018127	exon20	c.A1893G	p.T631T	ATCACATGTTCGC	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	37	2	218674614	218674614	+	Silent	SNP	C	C	T	rs13417442	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	121	233	0	0.547511	0	C|0.934;T|0.066	0.066	strong	.	TNS1	251	.	NM_022648	exon30	c.G4893A	p.T1631T	AGCTGGCGTGGGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276889	152276889	+	Silent	SNP	A	A	G	rs3126067	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	280	142	299	0	0.507143	0	A|0.637;G|0.363	0.363	strong	.	FLG	900	.	NM_002016	exon3	c.T10473C	p.N3491N	TTCGTCATTACGA	.	PASS	Atlas-SNP
RASGEF1C	255426	hgsc.bcm.edu	37	5	179529124	179529124	+	Silent	SNP	G	G	A	rs7725201	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	109	82	0	1	0	G|0.210;A|0.790	0.790	strong	.	RASGEF1C	81	.	NM_175062	exon13	c.C1323T	p.Y441Y	ACTTTCGTAAGAA	.	PASS	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	37	7	2644607	2644607	+	Silent	SNP	G	G	T	rs2293405	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	23	54	0	0.377049	0	G|0.871;T|0.129	0.129	strong	IQCE,caecum,carcinoma,+2,2	IQCE	66	2	NM_152558	exon19	c.G1725T	p.V575V	CAGCGTGCCAGGC	.	PASS	Atlas-SNP
PLEK	5341	hgsc.bcm.edu	37	2	68622914	68622914	+	Missense_Mutation	SNP	G	G	A	rs1063479	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	259	115	246	0	0.444015	0	G|0.182;A|0.818	0.818	strong	.	PLEK	64	.	NM_002664	exon9	c.G1019A	p.R340K	GGATCAGAGCCAT	.	PASS	Atlas-SNP
FUT10	84750	hgsc.bcm.edu	37	8	33246685	33246685	+	Silent	SNP	G	G	A	rs16880852	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	132	321	1	0.5	0.00311526	G|0.768;A|0.232	0.232	strong	FUT10,NS,carcinoma,0,1	FUT10	62	1	NM_032664	exon4	c.C1008T	p.Y336Y	TCTGATGTAACTT	.	PASS	Atlas-SNP
CDC42EP4	23580	hgsc.bcm.edu	37	17	71282132	71282132	+	Missense_Mutation	SNP	C	C	T	rs375486831		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	68	110	0	0.482269	0	.	.	weak	CDC42EP4,colon,carcinoma,0,1	CDC42EP4	19	1	NM_012121	exon2	c.G508A	p.A170T	GACCCGCGGCCCC	.	PASS	Atlas-SNP
DYNAP	284254	hgsc.bcm.edu	37	18	52258548	52258548	+	Missense_Mutation	SNP	T	T	C	rs35428499	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	40	108	0	0.38835	0	T|0.861;C|0.139	0.139	strong	.	.	.	.	NM_173629	exon1	c.T113C	p.V38A	TGAACGTTGAGCA	.	PASS	Atlas-SNP
VENTX	27287	hgsc.bcm.edu	37	10	135053604	135053604	+	Missense_Mutation	SNP	G	G	A	rs9418952	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	25	58	0	0.5	0	G|0.916;A|0.084	0.084	strong	.	VENTX	24	.	NM_014468	exon3	c.G571A	p.G191R	CTGTCCGGGCCCC	.	PASS	Atlas-SNP
ZNF189	7743	hgsc.bcm.edu	37	9	104162272	104162272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	26	78	0	0.412698	0	.	.	none	ZNF189,NS,carcinoma,+1,1	ZNF189	79	1	NM_003452	exon2	c.A140G	p.Y47C	AGAATTATGGAAA	.	PASS	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	37	4	73942678	73942678	+	Silent	SNP	C	C	T	rs2306058	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	68	192	0	0.468966	0	C|0.852;T|0.148	0.148	strong	.	ANKRD17	214	.	NM_032217	exon33	c.G7731A	p.T2577T	ATTTTCCGTGGAG	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91636395	91636395	+	Silent	SNP	C	C	T	rs4900071	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	50	69	1	0.480769	0.0144928	C|0.767;T|0.233	0.233	strong	C14orf159,NS,carcinoma,0,1	C14orf159	57	1	NM_001102366	exon7	c.C306T	p.G102G	CACCGGCAGCCTG	.	scavenged	Atlas-SNP
SH2D3A	10045	hgsc.bcm.edu	37	19	6760974	6760974	+	Missense_Mutation	SNP	T	T	C	rs7258236	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	33	81	0	0.375	0	T|0.735;C|0.265	0.265	strong	.	SH2D3A	53	.	NM_005490	exon3	c.A94G	p.N32D	CGCCATTTTGCTG	.	PASS	Atlas-SNP
P2RX3	5024	hgsc.bcm.edu	37	11	57137424	57137424	+	Missense_Mutation	SNP	C	C	T	rs2276038	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	56	99	0	0.495575	0	C|0.650;T|0.349	0.349	strong	.	P2RX3	55	.	NM_002559	exon12	c.C1148T	p.A383V	CCACAGCGGAGAA	.	PASS	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	37	14	62463214	62463214	+	Silent	SNP	C	C	T	rs1889806	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	44	92	0	0.517647	0	C|0.433;T|0.567	0.567	strong	SYT16,NS,carcinoma,+2,1	SYT16	144	1	NM_031914	exon1	c.C477T	p.D159D	CTTTGACAGCCAG	.	PASS	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50746166	50746166	+	Silent	SNP	G	G	C	rs368983791		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	8	215	1	0.0329218	0.00465116	.	.	weak	FAM186A_ENST00000327337,NS,carcinoma,0,3	FAM186A	181	3	NM_001145475	exon4	c.C4449G	p.L1483L	AGGGATGAGAGGG	.	scavenged	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	37	5	38406251	38406251	+	Missense_Mutation	SNP	C	C	T	rs113400125	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	272	129	268	0	0.474265	0	C|0.978;T|0.022	0.022	strong	.	EGFLAM	302	.	NM_001205301	exon7	c.C736T	p.R246C	AGTGGCCGCTATG	.	PASS	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	37	20	16352344	16352344	+	Missense_Mutation	SNP	C	C	T	rs75989969	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	80	123	0	0.516129	0	C|0.989;T|0.011	0.011	strong	.	KIF16B	305	.	NM_001199866	exon21	c.G3413A	p.S1138N	CCTTCACTAATCA	.	PASS	Atlas-SNP
PLCD1	5333	hgsc.bcm.edu	37	3	38051941	38051941	+	Silent	SNP	T	T	C	rs9857730	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	75	151	0	0.490196	0	T|0.725;C|0.275	0.275	strong	PLCD1_ENST00000463876,NS,carcinoma,0,2	PLCD1	87	2	NM_001130964	exon6	c.A966G	p.P322P	GCTAAGTGGCTGG	.	PASS	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	37	10	52002980	52002980	+	Silent	SNP	T	T	G	rs3739979	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	85	210	0	0.427136	0	T|0.747;G|0.253	0.253	strong	.	ASAH2	69	.	NM_019893	exon3	c.A492C	p.S164S	CCTTTGTGATACC	.	PASS	Atlas-SNP
PLEKHS1	79949	hgsc.bcm.edu	37	10	115529576	115529576	+	Missense_Mutation	SNP	T	T	A	rs41292632	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	46	80	0	0.560976	0	T|0.838;A|0.162	0.162	strong	.	PLEKHS1	19	.	NM_024889	exon7	c.T469A	p.F157I	ACCCTCTTCTACT	.	PASS	Atlas-SNP
NTF3	4908	hgsc.bcm.edu	37	12	5603632	5603632	+	Silent	SNP	G	G	A	rs6332	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	19	29	0	0.655172	0	G|0.498;A|0.502	0.502	strong	.	NTF3	50	.	NM_001102654	exon2	c.G291A	p.P97P	CCAGCCGGTGATT	.	PASS	Atlas-SNP
KRT31	3881	hgsc.bcm.edu	37	17	39553547	39553547	+	Missense_Mutation	SNP	G	G	A	rs6503627	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	54	120	0	0.495413	0	G|0.938;A|0.062	0.062	strong	.	KRT31	158	.	NM_002277	exon1	c.C245T	p.A82V	AGCTCCGCGTTGT	.	PASS	Atlas-SNP
CREB3L4	148327	hgsc.bcm.edu	37	1	153941514	153941514	+	Missense_Mutation	SNP	C	C	T	rs11264743	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	95	214	0	0.521978	0	C|0.760;T|0.240	0.240	strong	.	CREB3L4	36	.	NM_001255978	exon3	c.C283T	p.P95S	GAGGACCCCTGCC	.	PASS	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	37	17	10448769	10448769	+	Silent	SNP	A	A	T	rs11078850	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	74	169	0	0.432749	0	A|0.586;T|0.414	0.414	strong	.	MYH2	390	.	NM_017534	exon5	c.T399A	p.P133P	ATACACAGGCAGC	.	PASS	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	37	11	4967834	4967834	+	Missense_Mutation	SNP	C	C	G	rs201205025		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	388	15	614	12	0.0386598	0.019544	.	.	weak	OR51A4,colon,carcinoma,-1,1	OR51A4	73	1	NM_001005329	exon1	c.G497C	p.R166T	AAGTTTCTTAAAG	.	scavenged	Atlas-SNP
POLH	5429	hgsc.bcm.edu	37	6	43582091	43582091	+	Missense_Mutation	SNP	A	A	T	rs6941583	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	89	177	0	0.523529	0	A|0.875;T|0.125	0.125	strong	.	POLH	54	.	NM_006502	exon11	c.A1939T	p.M647L	TGGGATATGCCAG	.	PASS	Atlas-SNP
HOXC11	3227	hgsc.bcm.edu	37	12	54367690	54367690	+	Missense_Mutation	SNP	C	C	T	rs12427129	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	9	16	0	0.5	0	C|0.931;T|0.069	0.069	strong	.	HOXC11	32	.	NM_014212	exon1	c.C665T	p.A222V	AGCCGGCCAAAGG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9070402	9070402	+	Missense_Mutation	SNP	G	G	T	rs12150888	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	276	147	277	2	0.532609	0.00722022	G|0.815;T|0.185	0.185	strong	MUC16_ENST00000397910,NS,carcinoma,+2,3	MUC16	4315	3	NM_024690	exon3	c.C17044A	p.P5682T	TTACGGGCTCTGG	.	scavenged	Atlas-SNP
PCGF3	10336	hgsc.bcm.edu	37	4	755129	755129	+	Silent	SNP	C	C	T	rs2242234	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	80	120	0	0.533333	0	C|0.930;T|0.070	0.070	strong	.	PCGF3	23	.	NM_006315	exon9	c.C525T	p.R175R	GATCCGCTGCTCA	.	PASS	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56388238	56388238	+	Missense_Mutation	SNP	C	C	G	rs2680704	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	72	75	0	0.525547	0	C|0.730;G|0.270	0.270	strong	BZRAP1_ENST00000355701,NS,carcinoma,0,4	BZRAP1	287	4	NM_004758	exon19	c.G3418C	p.A1140P	CTTTTGCCATCTC	.	PASS	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	37	9	2718654	2718654	+	Silent	SNP	G	G	A	rs7859993	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	41	107	0	0.376147	0	G|0.957;A|0.043	0.043	strong	.	KCNV2	72	.	NM_133497	exon1	c.G915A	p.V305V	GCACGTGGAGATG	.	PASS	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	37	1	6209363	6209363	+	Silent	SNP	T	T	C	rs12565328	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	49	116	0	0.485149	0	T|0.543;C|0.457	0.457	strong	.	CHD5	267	.	NM_015557	exon8	c.A1104G	p.V368V	CAGGCATACGAGA	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152129100	152129100	+	Missense_Mutation	SNP	C	C	T	rs200003389	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	45	324	3	0.154639	0.00925926	C|0.966;T|0.034	0.034	strong	RPTN,NS,carcinoma,0,1	RPTN	123	1	NM_001122965	exon3	c.G475A	p.G159S	ACTGACCATGGTG	.	scavenged	Atlas-SNP
LPXN	9404	hgsc.bcm.edu	37	11	58318619	58318619	+	Silent	SNP	C	C	G	rs1047979	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	109	107	0	0.990909	0	C|0.480;G|0.520	0.520	strong	.	LPXN	55	.	NM_001143995	exon5	c.G420C	p.L140L	CTGCTCCAGACCC	.	PASS	Atlas-SNP
ACER1	125981	hgsc.bcm.edu	37	19	6312290	6312290	+	Missense_Mutation	SNP	T	T	C	rs72981971	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	38	114	0	0.436782	0	T|0.883;C|0.117	0.117	strong	.	ACER1	38	.	NM_133492	exon3	c.A220G	p.M74V	AATACATGGAGAA	.	PASS	Atlas-SNP
C5orf34	375444	hgsc.bcm.edu	37	5	43505993	43505993	+	Silent	SNP	A	A	G	rs7710628	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	55	105	0	0.423077	0	A|0.526;G|0.474	0.474	strong	.	C5orf34	47	.	NM_198566	exon4	c.T789C	p.N263N	GATTTTATTATGA	.	PASS	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	37	16	4626215	4626215	+	Silent	SNP	C	C	T	rs79448011	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	64	102	0	0.561404	0	C|0.982;T|0.018	0.018	strong	.	C16orf96	28	.	NM_001145011	exon5	c.C1734T	p.Y578Y	AGCCTACGCCGCT	.	PASS	Atlas-SNP
LAD1	3898	hgsc.bcm.edu	37	1	201355669	201355669	+	Missense_Mutation	SNP	T	T	C	rs68021059	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	78	136	0	0.39196	0	T|0.917;C|0.083	0.083	strong	.	LAD1	42	.	NM_005558	exon3	c.A820G	p.T274A	CTGCAGTTGGGCT	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	37	8	11189215	11189215	+	Silent	SNP	C	C	A	rs151245433	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	25	150	0	0.107296	0	C|0.988;A|0.011	0.011	strong	AMAC1L2,NS,carcinoma,0,1	.	.	1	NM_054028	exon1	c.C600A	p.G200G	GGGAGGCCTGGCG	.	scavenged	Atlas-SNP
EXD3	54932	hgsc.bcm.edu	37	9	140247229	140247229	+	Missense_Mutation	SNP	C	C	T	rs199618022	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	53	122	0	0.540816	0	.	.	weak	.	EXD3	86	.	NM_017820	exon11	c.G880A	p.G294R	TCTGCCCCACCAG	.	PASS	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	37	5	35695844	35695844	+	Silent	SNP	T	T	C	rs78576797	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	48	105	0	0.48	0	T|0.979;C|0.021	0.021	strong	.	SPEF2	324	.	NM_024867	exon14	c.T1983C	p.N661N	TGCTAATGCTGAT	.	PASS	Atlas-SNP
RAD51AP2	729475	hgsc.bcm.edu	37	2	17696573	17696573	+	Missense_Mutation	SNP	C	C	T	rs834514	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	254	136	201	0	0.535433	0	C|0.409;T|0.591	0.591	strong	.	RAD51AP2	134	.	NM_001099218	exon1	c.G3110A	p.G1037D	TTAGGACCTGCTA	.	PASS	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	37	2	128464116	128464116	+	Silent	SNP	G	G	A	rs34550770	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	25	59	0	0.490196	0	G|0.935;A|0.065	0.065	strong	.	WDR33	136	.	NM_018383	exon22	c.C3792T	p.G1264G	TCCTGGGCCCCCT	.	PASS	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	37	12	113325629	113325629	+	Silent	SNP	T	T	C	rs4141253	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	39	62	0	0.438202	0	T|0.535;C|0.465	0.465	strong	.	RPH3A	98	.	NM_001143854	exon17	c.T1464C	p.F488F	CAAATTTGGCCAC	.	PASS	Atlas-SNP
USP45	85015	hgsc.bcm.edu	37	6	99894086	99894086	+	Missense_Mutation	SNP	C	C	G	rs41288947	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	51	90	0	0.386364	0	C|0.737;G|0.263	0.263	strong	.	USP45	56	.	NM_001080481	exon14	c.G1562C	p.R521T	CTGGATCTGAACA	.	PASS	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	37	3	51386357	51386357	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	63	114	0	0.525	0	.	.	none	.	DOCK3	397	.	NM_004947	exon39	c.C3990T	p.L1330L	GAGCCTCAGCTGG	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790671	4790671	+	Silent	SNP	C	C	T	rs11033795	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	62	110	0	0.525424	0	C|0.706;T|0.294	0.294	strong	.	OR51F1	60	.	NM_001004752	exon1	c.G477A	p.L159L	TAGTGGCAATATT	.	PASS	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7759595	7759595	+	Silent	SNP	C	C	T	rs7072478	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	24	36	0	0.428571	0	C|0.819;T|0.181	0.181	strong	ITIH2,NS,carcinoma,0,1	ITIH2	144	1	NM_002216	exon6	c.C474T	p.S158S	GAGCAGCGCTCTT	.	PASS	Atlas-SNP
KRT75	9119	hgsc.bcm.edu	37	12	52818377	52818377	+	Missense_Mutation	SNP	C	C	T	rs61730614	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	90	158	0	0.526316	0	C|0.848;T|0.152	0.152	strong	KRT75,rectum,NS,0,2	KRT75	75	2	NM_004693	exon9	c.G1580A	p.R527Q	AAGCCCCGGTTGC	.	PASS	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	37	11	21392487	21392487	+	Silent	SNP	C	C	T	rs4151056	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	61	108	0	0.61	0	C|0.868;T|0.132	0.132	strong	.	NELL1	179	.	NM_006157	exon15	c.C1638T	p.C546C	CCACTGCGAGAAA	.	PASS	Atlas-SNP
B4GALT3	8703	hgsc.bcm.edu	37	1	161145005	161145005	+	Silent	SNP	C	C	T	rs3813620	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	41	66	0	0.476744	0	C|0.918;T|0.082	0.082	strong	.	B4GALT3	39	.	NM_003779	exon4	c.G267A	p.S89S	GGACACCGACACA	.	PASS	Atlas-SNP
PER3	8863	hgsc.bcm.edu	37	1	7890153	7890153	+	Missense_Mutation	SNP	C	C	T	rs144178755	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	74	97	0	0.524823	0	C|0.998;T|0.002	0.002	strong	.	PER3	95	.	NM_016831	exon18	c.C3119T	p.T1040I	ATCCTACTGCCAC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	3	51	0	0.038961	0	.	.	none	MUC2_ENST00000441003,rectum,carcinoma,-1,4	MUC2	614	4	NM_002457	exon30	c.C4772T	p.T1591M	CCACTACGGTGAC	.	scavenged	Atlas-SNP
SMURF1	57154	hgsc.bcm.edu	37	7	98650051	98650051	+	Silent	SNP	G	G	C	rs219797	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	23	48	0	0.442308	0	G|0.362;C|0.638	0.638	strong	.	SMURF1	58	.	NM_020429	exon7	c.C498G	p.S166S	AGGCCCGGAGTCT	.	PASS	Atlas-SNP
RAD21	5885	hgsc.bcm.edu	37	8	117864217	117864217	+	Silent	SNP	A	A	G	rs1050838	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	91	168	0	0.491892	0	A|0.871;G|0.129	0.129	strong	RAD21,NS,carcinoma,0,1	RAD21	95	1	NM_006265	exon11	c.T1440C	p.A480A	TTGTCCAGCTTTT	.	PASS	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	37	9	96055063	96055063	+	Silent	SNP	C	C	T	rs41278286	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	70	117	0	0.486111	0	C|0.672;T|0.328	0.328	strong	WNK2_ENST00000297954,colon,carcinoma,+2,4	WNK2	277	4	NM_006648	exon22	c.C5316T	p.D1772D	ACCCGACGTCTAC	.	PASS	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	37	1	220331205	220331205	+	Missense_Mutation	SNP	C	C	G	rs2289189	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	41	58	0	0.554054	0	C|0.932;G|0.068	0.068	strong	.	RAB3GAP2	120	.	NM_012414	exon30	c.G3275C	p.S1092T	GTGTCACTCATTC	.	PASS	Atlas-SNP
JAG1	182	hgsc.bcm.edu	37	20	10620386	10620386	+	Silent	SNP	A	A	G	rs1051419	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	272	144	321	1	0.529412	0.00311526	G|0.694;C|0.000;A|0.306	0.694	strong	JAG1_ENST00000254958,NS,carcinoma,0,1	JAG1	213	1	NM_000214	exon26	c.T3417C	p.Y1139Y	GTTCTCATAATCC	.	PASS	Atlas-SNP
SLC25A10	1468	hgsc.bcm.edu	37	17	79686879	79686879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	75	128	0	0.477707	0	.	.	none	SLC25A10,NS,carcinoma,0,1	SLC25A10	24	1	NM_001270888	exon10	c.G751A	p.V251M	TGCGCCGTGGAGA	.	PASS	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	37	4	155250786	155250786	+	Silent	SNP	G	G	A	rs34249493	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	78	119	0	0.496815	0	G|0.978;A|0.022	0.022	strong	DCHS2_ENST00000339452,lower_third,carcinoma,-1,2	DCHS2	594	2	NM_001142552	exon6	c.C3807T	p.R1269R	GGAGCCGCGGTCT	.	PASS	Atlas-SNP
ALG10B	144245	hgsc.bcm.edu	37	12	38715000	38715000	+	Silent	SNP	A	A	G	rs35518352	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	170	169	0	1	0	A|0.664;G|0.336	0.336	strong	ALG10B,colon,carcinoma,0,1	ALG10B	58	1	NM_001013620	exon3	c.A1407G	p.Q469Q	CATTCAAAGGTTT	.	PASS	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	37	2	210517915	210517915	+	Silent	SNP	T	T	C	rs2271252	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	79	181	0	0.580882	0	T|0.756;C|0.244	0.244	strong	.	MAP2	372	.	NM_001039538	exon5	c.T21C	p.D7D	GAAAGATGAAGCA	.	PASS	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129833568	129833568	+	Missense_Mutation	SNP	C	C	A	rs145842163	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	78	149	0	0.453488	0	C|1.000;A|0.000	0.000	strong	.	LAMA2	481	.	NM_000426	exon63	c.C8918A	p.T2973K	CTACAACGACTGG	.	PASS	Atlas-SNP
TIRAP	114609	hgsc.bcm.edu	37	11	126162862	126162862	+	Silent	SNP	C	C	T	rs7932766	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	69	85	0	0.589744	0	C|0.822;T|0.178	0.178	strong	.	TIRAP	37	.	NM_148910	exon5	c.C558T	p.A186A	AGCTGCCTACCCA	.	PASS	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327921	16327921	+	Missense_Mutation	SNP	C	C	A	rs201030692		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	10	60	0	0.16129	0	.	.	weak	ATXN1,NS,carcinoma,0,1	ATXN1	117	1	NM_001128164	exon7	c.G621T	p.Q207H	ATGCTGCTGCTGC	.	PASS	Atlas-SNP
OR10W1	81341	hgsc.bcm.edu	37	11	58034543	58034543	+	Missense_Mutation	SNP	C	C	T	rs10792156	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	117	196	1	0.544186	0.00510204	C|0.523;T|0.477	0.477	strong	OR10W1,NS,malignant_melanoma,-1,1	OR10W1	58	1	NM_207374	exon1	c.G788A	p.R263Q	ATGAACCGATCTT	.	PASS	Atlas-SNP
SQLE	6713	hgsc.bcm.edu	37	8	126021414	126021414	+	Missense_Mutation	SNP	A	A	T	rs118130263	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	37	70	0	0.560606	0	A|0.992;T|0.008	0.008	strong	.	SQLE	29	.	NM_003129	exon6	c.A937T	p.N313Y	TTTTAGAATGCAC	.	PASS	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	37	3	123419573	123419573	+	Missense_Mutation	SNP	G	G	T	rs3732487	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	65	135	0	0.477941	0	G|0.879;T|0.121	0.121	strong	.	MYLK	224	.	NM_053025	exon18	c.C2742A	p.D914E	CTTCAGGTCGTCT	.	PASS	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	37	4	89397091	89397091	+	Missense_Mutation	SNP	A	A	G	rs7699006	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	145	196	1	0.993151	0.00510204	A|0.481;G|0.519	0.519	strong	.	HERC5	114	.	NM_016323	exon12	c.A1492G	p.M498V	TGTCCTATGATGC	.	PASS	Atlas-SNP
GSTA2	2939	hgsc.bcm.edu	37	6	52615415	52615415	+	Missense_Mutation	SNP	T	T	G	rs6577	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	88	109	0	0.53012	0	T|0.753;G|0.247	0.247	strong	GSTA2,NS,carcinoma,0,1	GSTA2	33	1	NM_000846	exon7	c.A629C	p.E210A	GATTTCTCATCCA	.	PASS	Atlas-SNP
KPNB1	3837	hgsc.bcm.edu	37	17	45735975	45735975	+	Nonsense_Mutation	SNP	G	G	A	rs1136613	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	12	45	0	0.352941	0	G|0.956;A|0.044	0.044	strong	.	KPNB1	58	.	NM_002265	exon5	c.T585A	p.Y195X	TGCTACGAATGCA	.	PASS	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	37	18	21750298	21750298	+	Missense_Mutation	SNP	C	C	T	rs145164093	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	41	126	0	0.37963	0	C|0.997;T|0.003	0.003	strong	.	OSBPL1A	94	.	NM_080597	exon24	c.G2411A	p.S804N	TGTTTGCTGTTCT	.	PASS	Atlas-SNP
PITPNA	5306	hgsc.bcm.edu	37	17	1456318	1456318	+	Silent	SNP	G	G	A	rs2230463	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	32	82	0	0.367816	0	G|0.940;C|0.000;A|0.060	0.060	strong	.	PITPNA	14	.	NM_006224	exon3	c.C177T	p.H59H	GATCTTGTGTGTG	.	PASS	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	37	1	67852335	67852335	+	Silent	SNP	G	G	A	rs2228420	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	180	190	0	0.994475	0	G|0.567;A|0.433	0.433	strong	.	IL12RB2	94	.	NM_001559	exon14	c.G1929A	p.T643T	CTCAACGCATTAC	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	37	6	168377071	168377071	+	Missense_Mutation	SNP	G	G	A	rs201618689	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	17	139	0	0.0798122	0	.	.	weak	.	.	.	.	NM_001129895	exon1	c.C262T	p.P88S	CAGTGGGGGTCAT	.	PASS	Atlas-SNP
CD109	135228	hgsc.bcm.edu	37	6	74493432	74493432	+	Missense_Mutation	SNP	A	A	C	rs10455097	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	59	69	0	1	0	A|0.454;C|0.546	0.546	strong	.	CD109	170	.	NM_133493	exon19	c.A2108C	p.Y703S	TCAGTTACAGGAT	.	PASS	Atlas-SNP
POLRMT	5442	hgsc.bcm.edu	37	19	622336	622336	+	Missense_Mutation	SNP	T	T	G	rs2238549	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	7	18	0	0.35	0	T|0.450;G|0.550	0.550	strong	POLRMT,rectum,carcinoma,0,1	POLRMT	91	1	NM_005035	exon9	c.A1664C	p.E555A	CCCAGCTCCTCCC	.	scavenged	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187510280	187510280	+	Silent	SNP	G	G	A	rs3775307	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	43	70	0	0.472527	0	G|0.920;A|0.080	0.080	strong	.	FAT1	500	.	NM_005245	exon27	c.C13233T	p.P4411P	GTACAGGGGTGTC	.	PASS	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	37	6	155761246	155761246	+	Missense_Mutation	SNP	G	G	T	rs3749930	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	24	45	0	0.510638	0	G|0.878;T|0.122	0.122	strong	.	NOX3	93	.	NM_015718	exon6	c.C512A	p.T171K	GCTATTGTCCTTA	.	PASS	Atlas-SNP
WDR46	9277	hgsc.bcm.edu	37	6	33256397	33256397	+	Silent	SNP	G	G	A	rs9277965	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	84	169	0	0.528302	0	G|0.874;A|0.126	0.126	strong	.	WDR46	43	.	NM_005452	exon3	c.C354T	p.S118S	CTTTCGGGATTTG	.	PASS	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84639350	84639350	+	Missense_Mutation	SNP	C	C	T	rs2277849	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	43	113	0	0.409524	0	C|0.712;T|0.288	0.288	strong	ADAMTSL3,NS,carcinoma,0,1	ADAMTSL3	290	1	NM_207517	exon20	c.C2605T	p.L869F	CCAGGGCTCCCTC	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126402890	126402890	+	Silent	SNP	G	G	A	rs6824160	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	22	76	0	0.338462	0	G|0.890;A|0.110	0.110	strong	.	FAT4	1752	.	NM_024582	exon15	c.G12813A	p.V4271V	TACTGTGAAGGTG	.	PASS	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	37	5	135388663	135388663	+	Silent	SNP	A	A	G	rs1054124	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	84	165	0	0.482759	0	A|0.650;G|0.350	0.350	strong	.	TGFBI	76	.	NM_000358	exon8	c.A981G	p.V327V	GTCTGTAGAGACC	.	PASS	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	37	18	66542006	66542006	+	Missense_Mutation	SNP	G	G	T	rs745894	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	12	60	0	0.307692	0	G|0.804;T|0.196	0.196	strong	.	CCDC102B	92	.	NM_001093729	exon7	c.G1037T	p.C346F	TGATTTGTGAGTT	.	PASS	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	37	8	1857548	1857548	+	Silent	SNP	T	T	C	rs2294038	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	44	80	0	0.444444	0	T|0.853;C|0.147	0.147	strong	.	ARHGEF10	255	.	NM_014629	exon18	c.T2055C	p.Y685Y	CGAGTATGGCAGC	.	PASS	Atlas-SNP
FRMD1	79981	hgsc.bcm.edu	37	6	168457966	168457966	+	Silent	SNP	G	G	A	rs3734899	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	140	154	1	0.992908	0.00649351	G|0.633;A|0.367	0.367	strong	.	FRMD1	52	.	NM_024919	exon11	c.C1461T	p.D487D	CATGTCGTCCAGG	.	PASS	Atlas-SNP
ZNF490	57474	hgsc.bcm.edu	37	19	12691335	12691335	+	Silent	SNP	G	G	A	rs3745652	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	40	94	0	0.533333	0	G|0.954;A|0.046	0.046	strong	.	ZNF490	42	.	NM_020714	exon5	c.C1554T	p.H518H	GTGCACGTGCAAA	.	PASS	Atlas-SNP
PRAMEF1	65121	hgsc.bcm.edu	37	1	12854401	12854401	+	Nonsense_Mutation	SNP	G	G	T	rs78584260	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	482	52	562	1	0.107884	0.00177936	G|0.500;C|0.500	.	alt	PRAMEF1,NS,carcinoma,0,2	PRAMEF1	78	2	NM_023013	exon3	c.G625T	p.E209X	ATTCAAGAGCTGG	.	scavenged	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	37	11	2435956	2435956	+	Missense_Mutation	SNP	C	C	T	rs4929982	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	10	8	0	0.5	0	C|0.459;T|0.541	0.541	strong	.	TRPM5	86	.	NM_014555	exon11	c.G1733A	p.R578Q	GCCAGCCGCTCGT	.	PASS	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921277	12921277	+	Silent	SNP	A	A	G	rs3204826	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	350	7	320	3	0.02	0.009375	A|0.996;G|0.004	0.004	strong	PRAMEF2,NS,carcinoma,0,1	PRAMEF2	85	1	NM_023014	exon4	c.A1068G	p.L356L	CGTGTTAGAGGGC	.	scavenged	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9057896	9057896	+	Missense_Mutation	SNP	G	G	C	rs12984471	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	101	185	0	0.51269	0	G|0.760;C|0.240	0.240	strong	.	MUC16	4315	.	NM_024690	exon3	c.C29550G	p.D9850E	GGTATCGTCCACA	.	PASS	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	37	1	19615030	19615030	+	Silent	SNP	A	A	C	rs199899317	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	51	165	1	0.2125	0.00606061	A|0.988;C|0.013	0.013	strong	AKR7A3,NS,carcinoma,0,1	AKR7A3	30	1	NM_012067	exon1	c.T174G	p.L58L	GCCGCCAAGGATG	.	scavenged	Atlas-SNP
HDAC10	83933	hgsc.bcm.edu	37	22	50686371	50686371	+	Missense_Mutation	SNP	C	C	T	rs34402301	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	73	128	0	0.548872	0	C|0.961;T|0.039	0.039	strong	.	HDAC10	29	.	NM_032019	exon13	c.G1285A	p.V429I	GGATGACGTCAGG	.	PASS	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	37	17	36654047	36654047	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	413	5	360	0	0.0121065	0	.	.	none	ARHGAP23,NS,carcinoma,0,3	ARHGAP23	48	3	NM_001199417	exon21	c.C3297T	p.D1099D	CAGTGACGAAGAG	.	scavenged	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306873	1306873	+	Silent	SNP	G	G	A	rs113333718	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	649	113	416	0	0.174114	0	G|0.884;A|0.116	0.116	strong	.	TPSD1	47	.	NM_012217	exon3	c.G330A	p.P110P	GCTGCCGGTCAGC	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152329435	152329435	+	Missense_Mutation	SNP	C	C	T	rs2282303	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	69	130	0	0.522727	0	C|0.750;T|0.250	0.250	strong	.	FLG2	431	.	NM_001014342	exon3	c.G827A	p.R276Q	TGACTTCGCCTCC	.	PASS	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	37	17	61607708	61607708	+	Silent	SNP	T	T	C	rs7221517	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	50	100	0	0.423729	0	T|0.671;C|0.329	0.329	strong	.	KCNH6	122	.	NM_030779	exon4	c.T480C	p.H160H	CTCTCATGGCAGG	.	PASS	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101606890	101606890	+	Silent	SNP	C	C	A	rs56193104	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	64	174	0	0.481203	0	C|0.740;A|0.260	0.260	strong	.	LRRK1	310	.	NM_024652	exon33	c.C5814A	p.G1938G	TTCTGGCGCCCAG	.	PASS	Atlas-SNP
KLK12	43849	hgsc.bcm.edu	37	19	51535130	51535130	+	Splice_Site	SNP	A	A	G	rs3745540	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	77	0	1	0	A|0.476;G|0.524	0.524	strong	KLK12,NS,carcinoma,0,2	KLK12	30	2	NM_145894	exon5	c.457+2T>C	.	CCCCTTACTCCGT	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104059542	104059542	+	Missense_Mutation	SNP	G	G	A	rs2243682	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	28	82	0	0.388889	0	G|0.855;A|0.145	0.145	strong	CENPE,NS,carcinoma,0,1	CENPE	253	1	NM_001813	exon39	c.C6269T	p.T2090M	CTTTCCGTAAGGT	.	PASS	Atlas-SNP
ZKSCAN3	80317	hgsc.bcm.edu	37	6	28331573	28331573	+	Missense_Mutation	SNP	T	T	A	rs213227	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	34	75	0	0.441558	0	T|0.958;A|0.042	0.042	strong	.	ZKSCAN3	50	.	NM_024493	exon5	c.T738A	p.H246Q	GAACCATGGCAGC	.	PASS	Atlas-SNP
OR52N1	79473	hgsc.bcm.edu	37	11	5809811	5809811	+	Missense_Mutation	SNP	G	G	T	rs12365487	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	71	123	0	0.496504	0	G|0.886;T|0.114	0.114	strong	.	OR52N1	70	.	NM_001001913	exon1	c.C236A	p.T79N	GGAAGGGTGCTGG	.	PASS	Atlas-SNP
MON2	23041	hgsc.bcm.edu	37	12	62959137	62959137	+	Missense_Mutation	SNP	A	A	G	rs11174549	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	44	63	0	0.556962	0	A|0.924;G|0.076	0.076	strong	.	MON2	160	.	NM_015026	exon27	c.A4153G	p.I1385V	AAGCACATTGCAA	.	PASS	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	37	18	59768375	59768375	+	Silent	SNP	A	A	G	rs17714063	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	15	46	0	0.348837	0	A|0.851;G|0.149	0.149	strong	.	PIGN	62	.	NM_176787	exon22	c.T2010C	p.T670T	ACTCTGAGTGCTA	.	PASS	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	37	19	12059645	12059645	+	Missense_Mutation	SNP	A	A	G	rs12327617	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	22	50	0	0.360656	0	A|0.938;G|0.062	0.062	strong	.	ZNF700	81	.	NM_001271848	exon4	c.A815G	p.E272G	TACATGAAAGAAC	.	PASS	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	37	17	43552921	43552921	+	Silent	SNP	C	C	T	rs12452273	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	203	225	0	0.985437	0	C|0.865;T|0.135	0.135	strong	.	PLEKHM1	69	.	NM_014798	exon4	c.G468A	p.R156R	AGCATCCCGGAGC	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47851796	47851796	+	Silent	SNP	G	G	A	rs9983522	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	21	38	0	0.488372	0	G|0.887;A|0.113	0.113	strong	.	PCNT	283	.	NM_006031	exon38	c.G8418A	p.A2806A	GCAAGCGATGCTT	.	PASS	Atlas-SNP
GOLGA6L1	283767	hgsc.bcm.edu	37	15	22743235	22743235	+	Silent	SNP	A	A	G	rs371649333	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	13	10	0	0.276596	0	.	.	weak	GOLGA6L1,NS,carcinoma,0,5	GOLGA6L1	20	5	NM_001001413	exon8	c.A1620G	p.R540R	GATACGAGAGCAG	.	PASS	Atlas-SNP
C8orf86	389649	hgsc.bcm.edu	37	8	38385914	38385914	+	Missense_Mutation	SNP	C	C	T	rs1378332	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	53	84	0	0.535354	0	C|0.885;T|0.115	0.115	strong	.	C8orf86	17	.	NM_207412	exon1	c.G242A	p.R81H	CGCCAGCGGCGTC	.	PASS	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	37	10	94026	94026	+	Silent	SNP	G	G	A	rs10904032	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	106	263	0	0.438017	0	G|0.731;A|0.269	0.269	strong	.	TUBB8	62	.	NM_177987	exon4	c.C306T	p.A102A	TCCCTTGGCCCAG	.	PASS	Atlas-SNP
TLK2	11011	hgsc.bcm.edu	37	17	60601664	60601664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	533	5	553	1	0.00938086	0.00180832	.	.	none	TLK2_ENST00000346027,NS,carcinoma,-1,3	TLK2	223	3	NM_006852	exon6	c.C335T	p.P112L	CCTCACCGCAACA	.	scavenged	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	37	18	56204417	56204417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	43	143	0	0.472527	0	.	.	none	.	ALPK2	487	.	NM_052947	exon5	c.C3002T	p.A1001V	CTGGTCGCTTGAA	.	PASS	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48745035	48745035	+	Silent	SNP	A	A	C	rs11568601	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	24	71	0	0.444444	0	A|0.984;C|0.016	0.016	strong	.	ABCC3	138	.	NM_003786	exon12	c.A1552C	p.R518R	GGCATCAGGCAGG	.	PASS	Atlas-SNP
CRIP1	1396	hgsc.bcm.edu	37	14	105954705	105954705	+	Missense_Mutation	SNP	C	C	T	rs55633823	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	144	154	0	0.972973	0	C|0.838;T|0.162	0.162	strong	.	CRIP1	1	.	NM_001311	exon4	c.C173T	p.A58V	GCTACGCAGCCAT	.	PASS	Atlas-SNP
SMPD2	6610	hgsc.bcm.edu	37	6	109764535	109764535	+	Missense_Mutation	SNP	G	G	T	rs1476387	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	103	160	0	0.530928	0	A|0.000;G|0.469;T|0.531	0.531	strong	SMPD2,NS,carcinoma,0,1	SMPD2	25	1	NM_003080	exon9	c.G795T	p.R265S	TCACAGGGGCACC	.	PASS	Atlas-SNP
CDON	50937	hgsc.bcm.edu	37	11	125851181	125851181	+	Silent	SNP	G	G	A	rs684805	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	31	53	0	0.553571	0	G|0.695;A|0.305	0.305	strong	.	CDON	137	.	NM_016952	exon17	c.C3039T	p.N1013N	CTGCCCGTTCATA	.	PASS	Atlas-SNP
NSUN4	387338	hgsc.bcm.edu	37	1	46810530	46810530	+	Missense_Mutation	SNP	A	A	G	rs3737744	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	121	200	0	0.504167	0	G|0.311;N|0.000	0.311	strong	.	NSUN4	26	.	NM_199044	exon2	c.A151G	p.T51A	GACATGACTTACA	.	PASS	Atlas-SNP
ZFAND4	93550	hgsc.bcm.edu	37	10	46143958	46143958	+	Missense_Mutation	SNP	T	T	G	rs17854567	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	44	71	0	0.511628	0	T|0.909;G|0.091	0.091	strong	.	.	.	.	NM_001128324	exon5	c.A353C	p.K118T	GCCATCTTCCTAA	.	PASS	Atlas-SNP
SENP7	57337	hgsc.bcm.edu	37	3	101085413	101085413	+	Silent	SNP	G	G	A	rs939443	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	132	144	0	0.977778	0	G|0.603;A|0.397	0.397	strong	.	SENP7	170	.	NM_020654	exon9	c.C1179T	p.T393T	CTCAACGGTTTCA	.	PASS	Atlas-SNP
ELSPBP1	64100	hgsc.bcm.edu	37	19	48525466	48525466	+	Missense_Mutation	SNP	C	C	T	rs35700000	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	102	200	0	0.457399	0	C|0.980;T|0.020	0.020	strong	.	ELSPBP1	29	.	NM_022142	exon6	c.C554T	p.P185L	ACTTTCCGTTCAA	.	PASS	Atlas-SNP
KIF24	347240	hgsc.bcm.edu	37	9	34257095	34257095	+	Missense_Mutation	SNP	G	G	A	rs41274041	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	45	133	0	0.420561	0	G|0.861;A|0.139	0.139	strong	.	KIF24	64	.	NM_194313	exon11	c.C2510T	p.S837F	TGACTAGAGATGT	.	PASS	Atlas-SNP
TBC1D2	55357	hgsc.bcm.edu	37	9	100971348	100971348	+	Silent	SNP	T	T	C	rs3739666	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	76	127	0	0.520548	0	T|0.384;C|0.616	0.616	strong	TBC1D2,colon,carcinoma,0,1	TBC1D2	70	1	NM_001267571	exon9	c.A1752G	p.A584A	CTCCAATGCCTGG	.	PASS	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	37	11	66468469	66468469	+	Missense_Mutation	SNP	A	A	G	rs506028	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	18	49	0	0.391304	0	A|0.829;G|0.171	0.171	strong	.	SPTBN2	188	.	NM_006946	exon16	c.T3101C	p.V1034A	ATGGCCACTGCCT	.	PASS	Atlas-SNP
ZNF500	26048	hgsc.bcm.edu	37	16	4815602	4815602	+	Silent	SNP	T	T	C	rs12919587	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	97	191	0	0.468599	0	T|0.523;C|0.477	0.477	strong	.	ZNF500	45	.	NM_021646	exon2	c.A378G	p.E126E	CAGCCCTTCCACA	.	PASS	Atlas-SNP
C3orf20	84077	hgsc.bcm.edu	37	3	14745857	14745857	+	Missense_Mutation	SNP	G	G	A	rs17040196	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	52	81	0	0.481481	0	G|0.588;A|0.412	0.412	strong	.	C3orf20	109	.	NM_032137	exon7	c.G892A	p.A298T	GAAAGGGCCACAT	.	PASS	Atlas-SNP
MRGPRX1	259249	hgsc.bcm.edu	37	11	18955861	18955861	+	Silent	SNP	C	C	T	rs72890000	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	47	100	0	0.5875	0	C|0.905;T|0.095	0.095	strong	.	MRGPRX1	84	.	NM_147199	exon1	c.G471A	p.E157E	CATCCACTCCAGG	.	PASS	Atlas-SNP
CNTNAP3B	728577	hgsc.bcm.edu	37	9	43685357	43685357	+	Missense_Mutation	SNP	C	C	A	rs4879079	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	95	103	1	0.508021	0.00970874	C|0.500;A|0.500	0.500	strong	CNTNAP3B,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CNTNAP3B	37	1	NM_001201380	exon1	c.C63A	p.S21R	TTGGAGCCCCGTA	.	scavenged	Atlas-SNP
CARD9	64170	hgsc.bcm.edu	37	9	139266496	139266496	+	Missense_Mutation	SNP	C	C	T	rs4077515	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	41	75	0	0.471264	0	C|0.634;T|0.366	0.366	strong	CARD9,NS,carcinoma,0,1	CARD9	47	1	NM_052813	exon2	c.G35A	p.S12N	AGGACGCTCCAGC	.	PASS	Atlas-SNP
KDM5A	5927	hgsc.bcm.edu	37	12	427575	427575	+	Missense_Mutation	SNP	A	A	G	rs11062385	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	61	116	0	0.54955	0	A|0.651;G|0.349	0.349	strong	.	KDM5A	307	.	NM_001042603	exon19	c.T2594C	p.M865T	TCATCCATCATGG	.	PASS	Atlas-SNP
CCDC27	148870	hgsc.bcm.edu	37	1	3679775	3679775	+	Missense_Mutation	SNP	C	C	T	rs10910024	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	39	60	0	0.433333	0	C|0.836;T|0.164	0.164	strong	.	CCDC27	79	.	NM_152492	exon7	c.C1058T	p.T353M	AGGACACGGGTGC	.	PASS	Atlas-SNP
TMEM144	55314	hgsc.bcm.edu	37	4	159158677	159158677	+	Silent	SNP	G	G	A	rs12504074	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	67	101	0	0.54918	0	G|0.912;A|0.088	0.088	strong	.	TMEM144	34	.	NM_018342	exon9	c.G564A	p.V188V	TGTAAGGGGCTGC	.	PASS	Atlas-SNP
RPS6KA2	6196	hgsc.bcm.edu	37	6	166873010	166873010	+	Silent	SNP	C	C	T	rs2230729	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	48	86	0	0.545455	0	C|0.849;T|0.151	0.151	strong	.	RPS6KA2	212	.	NM_001006932	exon13	c.G1026A	p.P342P	TTTGAACGGTGGC	.	PASS	Atlas-SNP
LINGO3	645191	hgsc.bcm.edu	37	19	2290870	2290870	+	Silent	SNP	G	G	C	rs8111892	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	21	21	0	0.6	0	G|0.803;C|0.197	0.197	strong	.	LINGO3	19	.	NM_001101391	exon2	c.C906G	p.A302A	GGCCCCGGCCAGG	.	PASS	Atlas-SNP
DHDH	27294	hgsc.bcm.edu	37	19	49445817	49445817	+	Missense_Mutation	SNP	T	T	C	rs11666105	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	61	0	1	0	T|0.634;C|0.366	0.366	strong	.	DHDH	35	.	NM_014475	exon5	c.T740C	p.V247A	GCATGGTACAGGT	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216073505	216073505	+	Silent	SNP	C	C	T	rs12404427	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	31	54	0	0.442857	0	C|0.926;T|0.074	0.074	strong	.	USH2A	1168	.	NM_206933	exon40	c.G7506A	p.P2502P	TGTGTACGGTTGG	.	PASS	Atlas-SNP
NLGN2	57555	hgsc.bcm.edu	37	17	7320581	7320581	+	Silent	SNP	C	C	T	rs78081080	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	20	22	0	0.769231	0	C|0.948;T|0.052	0.052	strong	.	NLGN2	61	.	NM_020795	exon7	c.C1971T	p.P657P	CGAGCCCGGCCCA	.	PASS	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	37	14	59113537	59113537	+	Silent	SNP	C	C	G	rs61755641	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	36	50	0	0.631579	0	C|0.956;G|0.044	0.044	strong	.	DACT1	119	.	NM_016651	exon4	c.C2196G	p.S732S	CGAGTCCCTGTTC	.	PASS	Atlas-SNP
TRAF3IP1	26146	hgsc.bcm.edu	37	2	239237953	239237953	+	Missense_Mutation	SNP	G	G	T	rs12464423	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	34	89	0	0.492754	0	A|0.000;G|0.758;T|0.242	0.242	strong	.	TRAF3IP1	58	.	NM_015650	exon5	c.G885T	p.K295N	GGAGAAGAACAGA	.	PASS	Atlas-SNP
EBLN2	55096	hgsc.bcm.edu	37	3	73111973	73111973	+	Silent	SNP	A	A	G	rs2231928	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	93	128	0	1	0	A|0.395;G|0.605	0.605	strong	.	EBLN2	18	.	NM_018029	exon1	c.A741G	p.P247P	AAGACCATGGGTT	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	37	15	90334240	90334240	+	Silent	SNP	A	A	G	rs25654	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	91	224	0	0.439614	0	A|0.675;G|0.325	0.325	strong	.	ANPEP	124	.	NM_001150	exon19	c.T2613C	p.I871I	TTGCCCAATGACG	.	PASS	Atlas-SNP
AGTR1	185	hgsc.bcm.edu	37	3	148459129	148459129	+	Missense_Mutation	SNP	A	A	T	rs201745152		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	17	28	0	0.404762	0	A|0.999;T|0.001	0.001	weak	.	AGTR1	63	.	NM_031850	exon4	c.A412T	p.I138F	TGTAAGATTGCTT	.	PASS	Atlas-SNP
BDKRB2	624	hgsc.bcm.edu	37	14	96703484	96703484	+	Missense_Mutation	SNP	C	C	T	rs1046248	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	78	149	0	0.527027	0	C|0.933;T|0.067	0.067	strong	.	BDKRB2	56	.	NM_000623	exon2	c.C40T	p.R14C	TCTGTTCGTGAGG	.	PASS	Atlas-SNP
SIRT3	23410	hgsc.bcm.edu	37	11	233067	233067	+	Missense_Mutation	SNP	C	C	T	rs11246020	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	222	246	0	1	0	T|0.146;C|0.854	0.146	strong	.	SIRT3	28	.	NM_012239	exon3	c.G622A	p.V208I	GAGTGACGTTGGG	.	PASS	Atlas-SNP
CNN2	1265	hgsc.bcm.edu	37	19	1036456	1036456	+	Silent	SNP	C	C	G	rs1064410	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	79	167	0	0.420213	0	C|0.837;G|0.163	0.163	strong	.	CNN2	26	.	NM_004368	exon6	c.C549G	p.A183A	GACTGCCTACGGC	.	PASS	Atlas-SNP
KLHL17	339451	hgsc.bcm.edu	37	1	900505	900505	+	Silent	SNP	G	G	C	rs28705211	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	77	126	3	0.487342	0.0238095	G|0.802;C|0.198	0.198	strong	KLHL17,NS,carcinoma,0,1	KLHL17	31	1	NM_198317	exon12	c.G1863C	p.V621V	GGCGGTGCTGGAG	.	scavenged	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139273288	139273288	+	Silent	SNP	C	C	T	rs3829112	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	93	157	0	0.492063	0	C|0.845;T|0.155	0.155	strong	.	SNAPC4	82	.	NM_003086	exon21	c.G2991A	p.E997E	TGTGCCCTCGGCC	.	PASS	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	37	7	139415775	139415775	+	Silent	SNP	G	G	C	rs7456421	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	111	231	0	0.572165	0	G|0.630;C|0.370	0.370	strong	.	HIPK2	192	.	NM_022740	exon2	c.C1059G	p.V353V	CTTGGAGACGTGG	.	PASS	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	37	5	54645411	54645411	+	Silent	SNP	G	G	A	rs2061242	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	84	242	0	0.509091	0	G|0.840;A|0.160	0.160	strong	.	SKIV2L2	104	.	NM_015360	exon12	c.G1251A	p.K417K	AGAAAAGAAGATG	.	PASS	Atlas-SNP
COX6A2	1339	hgsc.bcm.edu	37	16	31439170	31439170	+	Silent	SNP	G	G	A	rs12240	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	22	50	0	0.415094	0	G|0.928;A|0.072	0.072	strong	.	COX6A2	7	.	NM_005205	exon3	c.C219T	p.P73P	CCCCCAGGGGTAG	.	PASS	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70924696	70924696	+	Silent	SNP	G	G	A	rs77892318	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	25	146	0	0.290698	0	G|0.946;A|0.054	0.054	strong	ADAM21_ENST00000267499,NS,carcinoma,0,1	ADAM21	181	1	NM_003813	exon2	c.G480A	p.K160K	TTATAAGATAAAC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105414238	105414238	+	Missense_Mutation	SNP	C	C	A	rs60754080	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	206	198	0	0.985646	0	C|0.609;A|0.391	0.391	strong	AHNAK2_ENST00000333244,colon,carcinoma,-1,1	AHNAK2	719	1	NM_138420	exon7	c.G7550T	p.G2517V	AGGCTCCCGTCGG	.	PASS	Atlas-SNP
CAPRIN2	65981	hgsc.bcm.edu	37	12	30868002	30868002	+	Silent	SNP	C	C	T	rs13656	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	99	173	0	0.568965	0	C|0.347;T|0.653	0.653	strong	.	CAPRIN2	109	.	NM_001002259	exon15	c.G2541A	p.V847V	GGGAAACACATTC	.	PASS	Atlas-SNP
XPO4	64328	hgsc.bcm.edu	37	13	21374333	21374333	+	Silent	SNP	A	A	G	rs9579954	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	91	151	0	0.541667	0	A|0.912;G|0.088	0.088	strong	.	XPO4	153	.	NM_022459	exon15	c.T2109C	p.T703T	CTGCACAGTGTCA	.	PASS	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	37	10	124390721	124390721	+	Silent	SNP	T	T	C	rs72836136	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	67	116	2	0.57265	0.0172414	T|0.981;C|0.019	0.019	strong	DMBT1_ENST00000368915,NS,carcinoma,+2,3	DMBT1	677	3	NM_007329	exon46	c.T5883C	p.T1961T	ATCCACTCTCTGG	.	scavenged	Atlas-SNP
KNSTRN	90417	hgsc.bcm.edu	37	15	40675493	40675493	+	Missense_Mutation	SNP	C	C	T	rs7169262	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	15	31	0	0.428571	0	C|0.934;T|0.066	0.066	strong	.	.	.	.	NM_033286	exon2	c.C274T	p.P92S	CAGCCCCCCTCTG	.	PASS	Atlas-SNP
TSPAN9	10867	hgsc.bcm.edu	37	12	3389601	3389601	+	Silent	SNP	C	C	T	rs66501720	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	27	49	0	0.54	0	C|0.932;T|0.068	0.068	strong	.	TSPAN9	20	.	NM_006675	exon6	c.C384T	p.T128T	CCACACCGAGAAC	.	PASS	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	37	9	738503	738503	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	52	134	0	0.440678	0	.	.	none	.	KANK1	231	.	NM_001256876	exon12	c.C3552T	p.A1184A	AGATGCCGGTATG	.	PASS	Atlas-SNP
FKBP10	60681	hgsc.bcm.edu	37	17	39976713	39976713	+	Missense_Mutation	SNP	C	C	T	rs146422412	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	43	72	0	0.472527	0	C|0.999;T|0.001	0.001	strong	.	FKBP10	57	.	NM_021939	exon7	c.C1256T	p.S419L	TCACCTCGTGGGT	.	PASS	Atlas-SNP
UBASH3B	84959	hgsc.bcm.edu	37	11	122665437	122665437	+	Silent	SNP	A	A	G	rs872414	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	51	115	0	0.463636	0	A|0.478;G|0.522	0.522	strong	.	UBASH3B	73	.	NM_032873	exon7	c.A1008G	p.S336S	ATCGTCATCCAAC	.	PASS	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	37	4	89421086	89421086	+	Silent	SNP	A	A	G	rs10516809	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	48	48	0	1	0	A|0.947;G|0.053	0.053	strong	.	HERC5	114	.	NM_016323	exon19	c.A2454G	p.Q818Q	TTTGCAAACACTT	.	PASS	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	37	15	45444518	45444518	+	Silent	SNP	A	A	G	rs1706804	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	134	126	1	1	0.00793651	A|0.405;G|0.595	0.595	strong	DUOX1,NS,carcinoma,0,1	DUOX1	125	1	NM_017434	exon26	c.A3228G	p.T1076T	CATCACAGACACC	.	PASS	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	37	10	51978270	51978270	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	2	82	0	0.0112994	0	.	.	none	ASAH2_ENST00000395526,NS,carcinoma,-1,2	ASAH2	69	2	NM_019893	exon7	c.G1014A	p.Q338Q	TCTCACCTGTCCA	.	scavenged	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37508450	37508450	+	Silent	SNP	A	A	C	rs1148259	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	146	154	1	0.986486	0.00649351	A|0.458;C|0.542	0.542	strong	.	ANKRD30A	448	.	NM_052997	exon34	c.A3642C	p.A1214A	TTATGCAGGAGAT	.	PASS	Atlas-SNP
SNAP47	116841	hgsc.bcm.edu	37	1	227935762	227935762	+	Missense_Mutation	SNP	G	G	A	rs2236358	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	53	88	0	0.552083	0	G|0.899;A|0.101	0.101	strong	.	SNAP47	42	.	NM_053052	exon2	c.G460A	p.V154M	GGAGCCGTGGCAG	.	PASS	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	37	2	8877042	8877042	+	Silent	SNP	G	G	A	rs61742863	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	72	182	0	0.428571	0	G|0.938;A|0.062	0.062	strong	.	KIDINS220	136	.	NM_020738	exon27	c.C3673T	p.L1225L	GGTCCAGCCCTTC	.	PASS	Atlas-SNP
CALU	813	hgsc.bcm.edu	37	7	128394606	128394606	+	Missense_Mutation	SNP	C	C	T	rs2307040	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	54	130	0	0.446281	0	C|0.785;T|0.215	0.215	strong	CALU_ENST00000542996,NS,carcinoma,0,1	CALU	42	1	NM_001199672	exon4	c.C269T	p.A90V	TAGACGCGGATAA	.	PASS	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350751	50350751	+	Missense_Mutation	SNP	G	G	C	rs201290098		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	6	66	0	0.115385	0	.	.	weak	.	SHROOM4	171	.	NM_020717	exon6	c.C3391G	p.Q1131E	CCTCCTGTTGCTT	.	PASS	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	37	9	107457275	107457275	+	Missense_Mutation	SNP	A	A	C	rs10820709	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	297	296	335	1	0.996633	0.00298507	A|0.560;C|0.440	0.440	strong	.	OR13D1	42	.	NM_001004484	exon1	c.A573C	p.Q191H	ATTGCAAACAGTT	.	PASS	Atlas-SNP
TUBG2	27175	hgsc.bcm.edu	37	17	40818451	40818451	+	Silent	SNP	G	G	A	rs76575695		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	385	152	284	2	0.394805	0.00704225	.	.	weak	TUBG2,bladder,carcinoma,+1,1	TUBG2	43	1	NM_016437	exon10	c.G1107A	p.S369S	GCCCTCGGCCCAC	.	scavenged	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	37	8	145114643	145114643	+	Silent	SNP	G	G	A	rs6558292	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	24	60	0	0.489796	0	G|0.920;A|0.080	0.080	strong	.	OPLAH	78	.	NM_017570	exon3	c.C222T	p.I74I	GCTGGCGATATGA	.	PASS	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	37	16	81248745	81248745	+	Missense_Mutation	SNP	A	A	G	rs8060294	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	43	114	0	0.40566	0	A|0.619;G|0.381	0.381	strong	PKD1L2_ENST00000525539,rectum,carcinoma,0,2	PKD1L2	361	2	NM_001076780	exon3	c.T518C	p.L173S	TGCCCCAAGCCAC	.	PASS	Atlas-SNP
AMZ1	155185	hgsc.bcm.edu	37	7	2752152	2752152	+	Silent	SNP	G	G	A	rs798565	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	55	0	0.457143	0	G|0.793;A|0.207	0.207	strong	AMZ1,colon,carcinoma,0,3	AMZ1	41	3	NM_133463	exon7	c.G1137A	p.S379S	CGCCTCGGGGCCA	.	PASS	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	37	1	171956803	171956803	+	Silent	SNP	C	C	T	rs3736790	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	14	32	0	0.4	0	C|0.681;T|0.319	0.319	strong	.	DNM3	85	.	NM_001136127	exon3	c.C243T	p.A81A	ATATGCCGAGTTT	.	PASS	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	37	7	77256713	77256713	+	Missense_Mutation	SNP	A	A	G	rs3750050	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	77	129	0	0.503268	0	A|0.745;G|0.255	0.255	strong	.	PTPN12	83	.	NM_002835	exon13	c.A1717G	p.T573A	AGTCCTACAACAC	.	PASS	Atlas-SNP
TULP2	7288	hgsc.bcm.edu	37	19	49398405	49398405	+	Missense_Mutation	SNP	C	C	T	rs34378208	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	23	56	0	0.418182	0	C|0.945;T|0.055	0.055	strong	.	TULP2	60	.	NM_003323	exon6	c.G364A	p.G122S	GGAGACCGAGATT	.	PASS	Atlas-SNP
NEU4	129807	hgsc.bcm.edu	37	2	242757411	242757411	+	Silent	SNP	C	C	T	rs36111671	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	65	115	0	0.507812	0	C|0.817;T|0.183	0.183	strong	.	NEU4	39	.	NM_001167599	exon4	c.C531T	p.G177G	CCACGGCGTGCAG	.	PASS	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	21145648	21145648	+	Silent	SNP	C	C	T	rs11074483	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	21	70	0	0.388889	0	C|0.759;T|0.241	0.241	strong	DNAH3_ENST00000261383,NS,carcinoma,0,2	DNAH3	1142	2	NM_017539	exon7	c.G1014A	p.K338K	GTTCCACTTCTTG	.	PASS	Atlas-SNP
STH	246744	hgsc.bcm.edu	37	17	44076665	44076665	+	Missense_Mutation	SNP	A	A	G	rs62063857	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	170	160	0	0.988372	0	A|0.159;C|0.093	.	strong	STH,rectum,carcinoma,+1,1	STH	14	1	NM_001007532	exon1	c.A20G	p.Q7R	GAGGCCAAGTCTC	.	PASS	Atlas-SNP
PALD1	27143	hgsc.bcm.edu	37	10	72289778	72289778	+	Missense_Mutation	SNP	C	C	T	rs2275060	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	26	51	0	0.448276	0	C|0.843;N|0.001	.	strong	.	.	.	.	NM_014431	exon4	c.C422T	p.S141L	GCCTCTCAGGGTT	.	PASS	Atlas-SNP
CLEC10A	10462	hgsc.bcm.edu	37	17	6981353	6981353	+	Silent	SNP	G	G	C	rs732828	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	74	160	0	0.480519	0	G|0.584;C|0.416	0.416	strong	.	CLEC10A	40	.	NM_182906	exon3	c.C147G	p.L49L	CAGCAGGAGGCCG	.	PASS	Atlas-SNP
KIAA0226L	80183	hgsc.bcm.edu	37	13	46946157	46946157	+	Missense_Mutation	SNP	C	C	T	rs1408184	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	98	169	0	0.487562	0	T|0.432;G|0.002	0.432	strong	.	KIAA0226L	63	.	NM_025113	exon3	c.G454A	p.G152R	AAATCCCAGGGCT	.	PASS	Atlas-SNP
ZNF230	7773	hgsc.bcm.edu	37	19	44514422	44514422	+	Silent	SNP	C	C	T	rs146185685	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	40	95	0	0.47619	0	C|1.000;T|0.000	0.000	weak	.	ZNF230	44	.	NM_006300	exon5	c.C231T	p.G77G	TATAGGCGGCAAG	.	PASS	Atlas-SNP
ACOXL	55289	hgsc.bcm.edu	37	2	111850515	111850515	+	Missense_Mutation	SNP	C	C	T	rs17041850	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	79	118	0	0.512987	0	C|0.930;T|0.070	0.070	strong	ACOXL_ENST00000439055,right_upper_lobe,carcinoma,-1,2	ACOXL	93	2	NM_001142807	exon17	c.C1514T	p.P505L	TGACTCCCATGGC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105407798	105407798	+	Missense_Mutation	SNP	T	T	C	rs4465542	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	116	70	0	0.983051	0	T|0.466;C|0.534	0.534	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A13990G	p.T4664A	GAAATGTGGAAGT	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9057750	9057750	+	Missense_Mutation	SNP	T	T	A	rs12982113	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	130	194	0	0.530612	0	T|0.754;A|0.246	0.246	strong	.	MUC16	4315	.	NM_024690	exon3	c.A29696T	p.Y9899F	ACTCCATAAAGGA	.	PASS	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885473	29885473	+	Missense_Mutation	SNP	C	C	T	rs5763269	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	23	57	0	0.45098	0	C|0.815;T|0.185	0.185	strong	.	NEFH	178	.	NM_021076	exon4	c.C1844T	p.P615L	AGTCACCGGCTGA	.	PASS	Atlas-SNP
ASPA	443	hgsc.bcm.edu	37	17	3397702	3397702	+	Silent	SNP	C	C	T	rs12948217	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	63	119	0	0.504	0	C|0.732;T|0.268	0.268	strong	.	ASPA	37	.	NM_000049	exon5	c.C693T	p.Y231Y	TGATTACCCCCGG	.	PASS	Atlas-SNP
EFHB	151651	hgsc.bcm.edu	37	3	19930130	19930130	+	Missense_Mutation	SNP	A	A	T	rs76305623	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	66	134	0	0.5	0	A|0.888;T|0.112	0.112	strong	EFHB_ENST00000295824,NS,haematopoietic_neoplasm,0,2	EFHB	186	2	NM_144715	exon10	c.T1739A	p.M580K	TCTATCATCCCAT	.	PASS	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	37	1	10720305	10720305	+	Missense_Mutation	SNP	A	A	G	rs138985539	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	11	31	0	0.478261	0	A|0.994;G|0.006	0.006	strong	.	CASZ1	150	.	NM_001079843	exon6	c.T794C	p.V265A	TTGCCCACCCGCT	.	PASS	Atlas-SNP
WFIKKN1	117166	hgsc.bcm.edu	37	16	681284	681284	+	Silent	SNP	C	C	T	rs8062289	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	12	31	0	0.6	0	C|0.799;T|0.201	0.201	strong	WFIKKN1,rectum,carcinoma,0,2	WFIKKN1	30	2	NM_053284	exon1	c.C31T	p.L11L	CCGCTCCTGCTCC	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466089	10466089	+	Missense_Mutation	SNP	G	G	C	rs77968698	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	31	86	0	0.392405	0	G|0.972;C|0.028	0.028	strong	.	RP1L1	453	.	NM_178857	exon4	c.C5519G	p.A1840G	CCTTCAGCCTCCG	.	PASS	Atlas-SNP
NKX1-2	390010	hgsc.bcm.edu	37	10	126136239	126136239	+	Missense_Mutation	SNP	A	A	G	rs146495217	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	13	22	0	0.541667	0	A|0.883;G|0.117	0.117	strong	.	NKX1-2	6	.	NM_001146340	exon2	c.T692C	p.V231A	CCCCCCACCTGCG	.	PASS	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	37	2	24432839	24432839	+	Silent	SNP	A	A	G	rs2303296	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	83	107	0	0.988095	0	A|0.824;G|0.176	0.176	strong	.	ITSN2	224	.	NM_006277	exon35	c.T4321C	p.L1441L	TGTATAATTTCCC	.	PASS	Atlas-SNP
ZBTB17	7709	hgsc.bcm.edu	37	1	16271260	16271260	+	Silent	SNP	G	G	A	rs9661939	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	94	90	0	1	0	G|0.802;A|0.198	0.198	strong	.	ZBTB17	45	.	NM_003443	exon8	c.C1002T	p.F334F	GCACGAGAAGGGC	.	PASS	Atlas-SNP
ZNF772	400720	hgsc.bcm.edu	37	19	57984918	57984918	+	Silent	SNP	A	A	G	rs2074058	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	55	54	0	1	0	A|0.659;G|0.341	0.341	strong	.	ZNF772	42	.	NM_001024596	exon5	c.T1194C	p.S398S	ATGAACACTCCAA	.	PASS	Atlas-SNP
CTBP2	1488	hgsc.bcm.edu	37	10	126715629	126715629	+	Missense_Mutation	SNP	C	C	T	rs3781409	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	201	206	0	1	0	C|0.782;T|0.218	0.218	strong	.	CTBP2	100	.	NM_022802	exon1	c.G700A	p.V234M	GGTCCACAACCAG	.	PASS	Atlas-SNP
CLEC10A	10462	hgsc.bcm.edu	37	17	6981397	6981397	+	Missense_Mutation	SNP	A	A	G	rs90951	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	68	151	0	0.503704	0	A|0.467;G|0.532	0.532	strong	.	CLEC10A	40	.	NM_182906	exon3	c.T103C	p.C35R	CAGAGCAGAGACG	.	PASS	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	37	3	193080414	193080414	+	Missense_Mutation	SNP	C	C	G	rs6797429	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	106	114	0	1	0	C|0.453;G|0.547	0.547	strong	.	ATP13A5	171	.	NM_198505	exon4	c.G397C	p.E133Q	GCACTTCCATGCA	.	PASS	Atlas-SNP
CYP2J2	1573	hgsc.bcm.edu	37	1	60392271	60392271	+	Silent	SNP	G	G	A	rs11572191	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	112	201	0	0.5	0	G|0.932;A|0.068	0.068	strong	.	CYP2J2	34	.	NM_000775	exon1	c.C148T	p.L50L	AGGGCAGGCGCCA	.	PASS	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	37	15	63988400	63988400	+	Missense_Mutation	SNP	G	G	C	rs74814914	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	62	123	0	0.459259	0	G|0.985;C|0.015	0.015	strong	.	HERC1	624	.	NM_003922	exon27	c.C5044G	p.L1682V	CTGCTAGGAACTG	.	PASS	Atlas-SNP
GPBP1L1	60313	hgsc.bcm.edu	37	1	46105889	46105889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	45	78	0	0.483871	0	.	.	none	.	GPBP1L1	43	.	NM_021639	exon8	c.C737T	p.P246L	TTGGAAGGAGGTG	.	PASS	Atlas-SNP
PCOLCE2	26577	hgsc.bcm.edu	37	3	142548681	142548681	+	Missense_Mutation	SNP	C	C	T	rs140721173	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	34	55	0	0.53125	0	C|0.999;T|0.001	0.001	strong	.	PCOLCE2	63	.	NM_013363	exon6	c.G718A	p.V240M	CAGACACAATTGG	.	PASS	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183086757	183086757	+	Silent	SNP	A	A	C	rs2296292	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	56	123	0	0.414815	0	A|0.489;C|0.511	0.511	strong	.	LAMC1	176	.	NM_002293	exon10	c.A1776C	p.A592A	CTCTGCAGAAGAC	.	PASS	Atlas-SNP
YIF1B	90522	hgsc.bcm.edu	37	19	38800165	38800165	+	Silent	SNP	C	C	T	rs3900981	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	88	175	0	0.53012	0	C|0.803;T|0.197	0.197	strong	.	YIF1B	47	.	NM_001039672	exon2	c.G177A	p.L59L	ATAACTCAGGCCA	.	PASS	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	37	10	98742750	98742750	+	Missense_Mutation	SNP	A	A	C	rs3829856	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	53	93	0	0.481818	0	A|0.918;C|0.082	0.082	strong	.	C10orf12	94	.	NM_015652	exon1	c.A1603C	p.I535L	CTTGAAATCAAAG	.	PASS	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	37	1	209807972	209807972	+	Silent	SNP	G	G	A	rs1130667	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	44	67	0	0.53012	0	G|0.713;A|0.287	0.287	strong	.	LAMB3	136	.	NM_000228	exon6	c.C384T	p.P128P	GCCGGCGGGCATG	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43924200	43924200	+	Missense_Mutation	SNP	C	C	G	rs12373142	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	72	54	0	0.986301	0	C|0.473;G|0.527	0.527	strong	.	.	.	.	NM_175882	exon1	c.C1928G	p.P643R	TGCCCCCGCCCTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415279	105415279	+	Missense_Mutation	SNP	T	T	C	rs201127689		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	25	25	223	0	1	0	.	.	weak	AHNAK2_ENST00000333244,NS,lymphoid_neoplasm,0,3	AHNAK2	719	3	NM_138420	exon7	c.A6509G	p.K2170R	ATGGACTTGCCTG	.	scavenged	Atlas-SNP
TRPV2	51393	hgsc.bcm.edu	37	17	16325968	16325968	+	Silent	SNP	A	A	G	rs8121	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	36	80	0	0.439024	0	A|0.561;G|0.439	0.439	strong	TRPV2,right_upper_lobe,carcinoma,+1,2	TRPV2	74	2	NM_016113	exon4	c.A390G	p.G130G	GGACGGAGTCAAT	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370985	240370985	+	Missense_Mutation	SNP	C	C	T	rs111896385	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	38	121	0	0.301587	0	C|0.803;T|0.197	0.197	strong	.	FMN2	451	.	NM_020066	exon5	c.C2873T	p.P958L	CGCCCCCTCTTCC	.	PASS	Atlas-SNP
PRSS58	136541	hgsc.bcm.edu	37	7	141955128	141955128	+	Silent	SNP	C	C	T	rs1894317	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	84	144	0	0.56	0	C|0.819;T|0.181	0.181	strong	.	PRSS58	41	.	NM_001001317	exon4	c.G183A	p.K61K	CCGAAGCTTTCTG	.	PASS	Atlas-SNP
DHX29	54505	hgsc.bcm.edu	37	5	54572163	54572163	+	Silent	SNP	T	T	C	rs3761764	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	219	106	210	0	0.484018	0	T|0.831;C|0.169	0.169	strong	.	DHX29	116	.	NM_019030	exon14	c.A2358G	p.K786K	CAGAAATTTCTGA	.	PASS	Atlas-SNP
RAET1E	135250	hgsc.bcm.edu	37	6	150211100	150211100	+	Silent	SNP	T	T	C	rs3798763	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	179	178	1	0.994444	0.00561798	T|0.790;C|0.210	0.210	strong	.	RAET1E	20	.	NM_139165	exon2	c.A267G	p.E89E	GGTCAATTCTCCC	.	PASS	Atlas-SNP
SLU7	10569	hgsc.bcm.edu	37	5	159835658	159835658	+	Missense_Mutation	SNP	A	A	G	rs2961944	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	156	193	0	0.993631	0	A|0.368;G|0.632	0.632	strong	.	SLU7	35	.	NM_006425	exon7	c.T686C	p.M229T	ATTACCATCTGAG	.	PASS	Atlas-SNP
TRIM33	51592	hgsc.bcm.edu	37	1	114973429	114973429	+	Silent	SNP	T	T	C	rs12083584	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	109	118	0	1	0	T|0.669;C|0.331	0.331	strong	.	TRIM33	115	.	NM_033020	exon6	c.A1146G	p.Q382Q	TAGCTGTTGTAAG	.	PASS	Atlas-SNP
VSIG10L	147645	hgsc.bcm.edu	37	19	51841364	51841364	+	Missense_Mutation	SNP	G	G	A	rs201452734	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	30	36	0	0.5	0	.	.	weak	.	VSIG10L	40	.	NM_001163922	exon6	c.C1828T	p.R610W	ATGCCCGTGAGGG	.	PASS	Atlas-SNP
C19orf45	374877	hgsc.bcm.edu	37	19	7573287	7573287	+	Missense_Mutation	SNP	C	C	T	rs1133378	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	89	133	0	1	0	C|0.736;T|0.264	0.264	strong	.	C19orf45	36	.	NM_198534	exon9	c.C1489T	p.P497S	CAGCCCCCTATGT	.	PASS	Atlas-SNP
SLC10A1	6554	hgsc.bcm.edu	37	14	70263648	70263648	+	Silent	SNP	C	C	T	rs4646285	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	62	142	0	0.455882	0	C|0.920;T|0.080	0.080	strong	.	SLC10A1	32	.	NM_003049	exon1	c.G225A	p.T75T	AAAGGCCGTGAGG	.	PASS	Atlas-SNP
ARMC2	84071	hgsc.bcm.edu	37	6	109197379	109197379	+	Missense_Mutation	SNP	T	T	C	rs9386758	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	56	156	0	0.440945	0	T|0.953;C|0.047	0.047	strong	.	ARMC2	56	.	NM_032131	exon5	c.T497C	p.M166T	CAGTTATGATGGG	.	PASS	Atlas-SNP
PAG1	55824	hgsc.bcm.edu	37	8	81905397	81905397	+	Silent	SNP	A	A	G	rs2016465	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	19	42	0	0.395833	0	A|0.513;G|0.487	0.487	strong	.	PAG1	39	.	NM_018440	exon4	c.T66C	p.A22A	GACAGCAGCCAGA	.	PASS	Atlas-SNP
SNN	8303	hgsc.bcm.edu	37	16	11769963	11769963	+	Silent	SNP	C	C	T	rs1050069	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	35	50	0	0.514706	0	C|0.685;T|0.315	0.315	strong	.	SNN	7	.	NM_003498	exon2	c.C48T	p.I16I	AGTCATCGTCATC	.	PASS	Atlas-SNP
SLC41A1	254428	hgsc.bcm.edu	37	1	205764031	205764031	+	Silent	SNP	G	G	A	rs151305052	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	44	108	0	0.419048	0	G|0.998;A|0.002	0.002	strong	.	SLC41A1	46	.	NM_173854	exon10	c.C1323T	p.F441F	GATGATGAAGATG	.	PASS	Atlas-SNP
ZBTB42	100128927	hgsc.bcm.edu	37	14	105267934	105267934	+	Missense_Mutation	SNP	G	G	A	rs34284721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	55	115	0	0.486726	0	G|0.930;A|0.070	0.070	strong	.	ZBTB42	10	.	NM_001137601	exon2	c.G400A	p.A134T	CCTGGGGCAGAAC	.	PASS	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	37	11	65348725	65348725	+	Silent	SNP	G	G	A	rs79021529	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	44	69	0	0.611111	0	G|0.951;A|0.049	0.049	strong	.	EHBP1L1	64	.	NM_001099409	exon8	c.G747A	p.V249V	CCCTGTGAGTGCT	.	PASS	Atlas-SNP
OR7A5	26659	hgsc.bcm.edu	37	19	14938616	14938616	+	Silent	SNP	T	T	C	rs2190686	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	110	114	0	0.990991	0	T|0.505;C|0.495	0.495	strong	.	OR7A5	43	.	NM_017506	exon1	c.A438G	p.L146L	GGATGCTAGAACC	.	PASS	Atlas-SNP
TMPRSS5	80975	hgsc.bcm.edu	37	11	113570385	113570385	+	Missense_Mutation	SNP	C	C	T	rs11601425	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	102	235	0	0.492754	0	C|0.946;T|0.054	0.054	strong	.	TMPRSS5	69	.	NM_030770	exon3	c.G137A	p.R46Q	CCACGTCGCATGG	.	PASS	Atlas-SNP
SLC12A6	9990	hgsc.bcm.edu	37	15	34543185	34543185	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	3	202	2	0.0150754	0.00990099	.	.	none	SLC12A6,NS,carcinoma,-1,1	SLC12A6	205	1	NM_133647	exon10	c.A1407G	p.L469L	GCTGCCTAAGACA	.	scavenged	Atlas-SNP
SLC6A1	6529	hgsc.bcm.edu	37	3	11064091	11064091	+	Silent	SNP	G	G	A	rs6344	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	59	101	0	0.567308	0	A|0.000;G|0.954;T|0.046	0.000	strong	.	SLC6A1	88	.	NM_003042	exon7	c.G651A	p.T217T	CATCACGCTGGCC	.	PASS	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	37	17	3846802	3846802	+	Silent	SNP	A	A	G	rs758641	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	104	115	0	1	0	A|0.605;G|0.395	0.395	strong	.	ATP2A3	148	.	NM_174956	exon11	c.T1302C	p.Y434Y	CTTCTCATACACA	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73205463	73205463	+	Missense_Mutation	SNP	G	G	A	rs17634853	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	25	38	0	0.531915	0	G|0.973;A|0.027	0.027	strong	.	.	.	.	NM_001080479	exon34	c.G4388A	p.R1463Q	AGCAGCGGGCGCA	.	PASS	Atlas-SNP
ENTPD2	954	hgsc.bcm.edu	37	9	139943429	139943429	+	Silent	SNP	G	G	A	rs7873815	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	16	14	14	0	0.875	0	G|0.564;A|0.436	0.436	strong	.	ENTPD2	30	.	NM_203468	exon8	c.C1248T	p.D416D	GCGCTCGTCGAAG	.	PASS	Atlas-SNP
BUB1B	701	hgsc.bcm.edu	37	15	40462780	40462780	+	Silent	SNP	G	G	A	rs1801389	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	45	95	0	0.445545	0	G|0.879;A|0.121	0.121	strong	.	BUB1B	71	.	NM_001211	exon4	c.G282A	p.K94K	TGGGAAGGAGAGT	.	PASS	Atlas-SNP
AUP1	550	hgsc.bcm.edu	37	2	74756548	74756548	+	Silent	SNP	G	G	C	rs1183739	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	87	170	0	0.465241	0	G|0.924;C|0.076	0.076	strong	.	AUP1	29	.	NM_181575	exon2	c.C129G	p.L43L	GAGAAAGAGGCGC	.	PASS	Atlas-SNP
OR7C1	26664	hgsc.bcm.edu	37	19	14910573	14910573	+	Missense_Mutation	SNP	C	C	T	rs10415562	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	122	108	1	1	0.00925926	C|0.206;T|0.794	0.794	strong	.	OR7C1	58	.	NM_198944	exon1	c.G376A	p.V126I	GACAGACGGCCAC	.	PASS	Atlas-SNP
RAB36	9609	hgsc.bcm.edu	37	22	23503121	23503121	+	Silent	SNP	G	G	A	rs5759611	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	52	106	0	0.448276	0	G|0.776;A|0.224	0.224	strong	.	RAB36	26	.	NM_004914	exon10	c.G873A	p.S291S	GCAGTCGGTGCTG	.	PASS	Atlas-SNP
C2orf70	339778	hgsc.bcm.edu	37	2	26800422	26800422	+	Silent	SNP	G	G	A	rs1053807	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	67	78	0	1	0	G|0.621;A|0.379	0.379	strong	C2orf70,NS,adenocarcinoma,+1,1	C2orf70	26	1	NM_001105519	exon3	c.G387A	p.T129T	CAAGACGGGCACA	.	PASS	Atlas-SNP
G6PC2	57818	hgsc.bcm.edu	37	2	169764546	169764546	+	Missense_Mutation	SNP	C	C	G	rs2232328	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	43	65	0	0.518072	0	C|0.776;G|0.224	0.224	strong	G6PC2,NS,carcinoma,0,1	G6PC2	44	1	NM_021176	exon5	c.C1025G	p.S342C	CCTACTCTGTTCA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418194	105418194	+	Silent	SNP	A	A	G	rs78447535	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	245	0	1	0	A|0.697;G|0.303	0.303	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T3594C	p.S1198S	GGGGAGACTCACG	.	PASS	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	37	7	76888362	76888362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	2	103	0	0.0178571	0	.	.	none	CCDC146,NS,carcinoma,0,1	CCDC146	87	1	NM_020879	exon7	c.A735G	p.I245M	AGAGATAGAAAAA	.	scavenged	Atlas-SNP
C10orf11	83938	hgsc.bcm.edu	37	10	78084184	78084184	+	Missense_Mutation	SNP	C	C	T	rs35349706	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	88	146	0	0.52071	0	C|0.961;T|0.039	0.039	strong	.	C10orf11	19	.	NM_032024	exon5	c.C458T	p.S153F	CCAGCTCCCCGGA	.	PASS	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	37	11	56000079	56000079	+	Missense_Mutation	SNP	C	C	T	rs77295387	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	255	118	207	0	0.462745	0	C|0.981;T|0.019	0.019	strong	.	OR5T2	107	.	NM_001004746	exon1	c.G583A	p.A195T	TAGTAGCATGTAA	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89805914	89805914	+	Missense_Mutation	SNP	T	T	C	rs9282681	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	74	144	0	0.521127	0	T|0.933;C|0.067	0.067	strong	.	FANCA	99	.	NM_000135	exon40	c.A3982G	p.T1328A	GCCTGGTGTGCTG	.	PASS	Atlas-SNP
EID2	163126	hgsc.bcm.edu	37	19	40030704	40030704	+	Missense_Mutation	SNP	C	C	T	rs7252027	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	27	48	0	0.435484	0	C|0.788;T|0.212	0.212	strong	.	EID2	14	.	NM_153232	exon1	c.G16A	p.A6T	TGTCTGCGGGCAG	.	PASS	Atlas-SNP
BNIP1	662	hgsc.bcm.edu	37	5	172581387	172581387	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	119	206	0	0.495833	0	.	.	none	.	BNIP1	30	.	NM_013979	exon4	c.A369G	p.E123E	CCAGGAAGTGGAG	.	PASS	Atlas-SNP
EPHA2	1969	hgsc.bcm.edu	37	1	16459787	16459787	+	Silent	SNP	C	C	A	rs56043737	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	65	109	0	0.481481	0	C|0.989;A|0.011	0.011	strong	EPHA2,colon,carcinoma,-1,1	EPHA2	102	1	NM_004431	exon11	c.G1941T	p.T647T	TTTCAGCGTCTTG	.	PASS	Atlas-SNP
C1orf106	55765	hgsc.bcm.edu	37	1	200867572	200867572	+	Missense_Mutation	SNP	T	T	A	rs41269923	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	49	69	0	0.590361	0	T|0.993;A|0.007	0.007	strong	.	C1orf106	59	.	NM_018265	exon2	c.T341A	p.I114N	GCATCATCCTGCA	.	PASS	Atlas-SNP
RNF32	140545	hgsc.bcm.edu	37	7	156469133	156469133	+	Missense_Mutation	SNP	C	C	G	rs2302147	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	52	96	0	0.490566	0	C|0.601;G|0.399	0.399	strong	.	RNF32	77	.	NM_001184996	exon9	c.C873G	p.H291Q	GACCCACGAGTGC	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47968927	47968927	+	Missense_Mutation	SNP	C	C	A	rs2686817	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	187	201	1	0.994681	0.00497512	C|0.513;A|0.487	0.487	strong	.	PKD1L1	328	.	NM_138295	exon7	c.G934T	p.V312F	TATGAACACGGAA	.	PASS	Atlas-SNP
WRAP73	49856	hgsc.bcm.edu	37	1	3548136	3548136	+	Silent	SNP	T	T	C	rs2760321	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	29	63	0	0.414286	0	T|0.138;C|0.862	0.862	strong	.	WRAP73	43	.	NM_017818	exon11	c.A1134G	p.A378A	CTGAAATGCGCGC	.	PASS	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	37	16	81253745	81253745	+	Missense_Mutation	SNP	C	C	G	rs9934272	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	61	127	0	0.488	0	C|0.685;G|0.315	0.315	strong	.	PKD1L2	361	.	NM_001076780	exon1	c.G231C	p.K77N	GATGTGCTTCTGC	.	PASS	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108141988	108141988	+	Missense_Mutation	SNP	T	T	C	rs139552233	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	35	79	1	0.466667	0.0126582	T|1.000;C|0.000	0.000	strong	ATM_ENST00000278616,colon,carcinoma,-2,5	ATM	1657	5	NM_000051	exon20	c.T2932C	p.S978P	GTGTGTTCTTTGT	.	scavenged	Atlas-SNP
AFP	174	hgsc.bcm.edu	37	4	74318177	74318177	+	Silent	SNP	T	T	C	rs35920062	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	234	118	223	0	0.504274	0	T|0.955;C|0.045	0.045	strong	.	AFP	60	.	NM_001134	exon12	c.T1488C	p.G496G	CCCTGGTGTTGGC	.	PASS	Atlas-SNP
TBC1D28	254272	hgsc.bcm.edu	37	17	18542519	18542519	+	Missense_Mutation	SNP	T	T	G	rs74452761	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	362	251	538	2	0.69337	0.00371747	T|0.485;G|0.515	0.515	strong	.	TBC1D28	14	.	NM_001039397	exon6	c.A167C	p.E56A	GGCAGCTCCATCT	.	PASS	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	37	5	54674296	54674296	+	Silent	SNP	A	A	G	rs10471413	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	324	161	276	1	0.496914	0.00362319	A|0.841;G|0.159	0.159	strong	.	SKIV2L2	104	.	NM_015360	exon17	c.A1965G	p.Q655Q	TCTACAACCAGGT	.	PASS	Atlas-SNP
EDEM2	55741	hgsc.bcm.edu	37	20	33703607	33703607	+	Missense_Mutation	SNP	C	C	T	rs3746429	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	99	175	0	0.466981	0	C|0.874;T|0.126	0.126	strong	.	EDEM2	46	.	NM_018217	exon11	c.G1366A	p.A456T	TCACCGCGTCGAA	.	PASS	Atlas-SNP
MRS2	57380	hgsc.bcm.edu	37	6	24418348	24418348	+	Silent	SNP	G	G	A	rs2793422	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	48	126	0	0.40678	0	G|0.730;A|0.270	0.270	strong	.	MRS2	31	.	NM_020662	exon8	c.G873A	p.E291E	AGAAGAGATGGAG	.	PASS	Atlas-SNP
GATC	283459	hgsc.bcm.edu	37	12	120884328	120884328	+	Silent	SNP	C	C	T	rs2235217	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	45	85	0	0.5625	0	C|0.744;T|0.256	0.256	strong	.	GATC	12	.	NM_176818	exon1	c.C45T	p.G15G	TCTGGGCGGGCGC	.	PASS	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	37	1	109806834	109806834	+	Silent	SNP	C	C	T	rs6698843	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	30	48	0	0.526316	0	C|0.633;T|0.367	0.367	strong	.	CELSR2	228	.	NM_001408	exon10	c.C5136T	p.P1712P	GGGGCCCGGCCAT	.	PASS	Atlas-SNP
SIAE	54414	hgsc.bcm.edu	37	11	124539273	124539273	+	Missense_Mutation	SNP	T	T	C	rs12282107	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	69	161	0	0.472603	0	T|0.906;C|0.094	0.094	strong	.	SIAE	37	.	NM_170601	exon2	c.A212G	p.K71R	GTCACTTTCTTCA	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216595306	216595306	+	Missense_Mutation	SNP	C	C	T	rs10779261	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	174	176	0	1	0	C|0.261;T|0.739	0.739	strong	.	USH2A	1168	.	NM_007123	exon2	c.G373A	p.A125T	AACTTGCAGAATT	.	PASS	Atlas-SNP
MRC1	4360	hgsc.bcm.edu	37	10	18122716	18122716	+	Silent	SNP	A	A	G	rs2985837	bycluster;bysubmitter	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	66	287	0	0.985075	0	A|0.250;G|0.750	0.750	weak	.	MRC1	13	.	NM_002438	exon4	c.G726G	p.Q242Q	GCACCAAGCGAGG	.	PASS	Atlas-SNP
UBC	7316	hgsc.bcm.edu	37	12	125397061	125397061	+	Silent	SNP	G	G	A	rs17840844	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	495	162	400	1	0.327273	0.0025	G|0.625;A|0.375	0.375	strong	UBC,NS,carcinoma,-2,1	UBC	79	1	NM_021009	exon2	c.C1257T	p.D419D	CTGCTGGTCAGGA	.	scavenged	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	37	10	113940329	113940329	+	Missense_Mutation	SNP	T	T	C	rs2792751	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	32	61	0	0.507937	0	T|0.224;C|0.776	0.776	strong	.	GPAM	68	.	NM_001244949	exon4	c.A127G	p.I43V	TGAAGATGGTGGG	.	PASS	Atlas-SNP
MGME1	92667	hgsc.bcm.edu	37	20	17968923	17968923	+	Silent	SNP	T	T	C	rs28455091	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	37	98	0	0.389474	0	T|0.732;C|0.268	0.268	strong	.	.	.	.	NM_052865	exon4	c.T846C	p.D282D	CCATGATACCAAC	.	PASS	Atlas-SNP
MC5R	4161	hgsc.bcm.edu	37	18	13826391	13826391	+	Missense_Mutation	SNP	C	C	G	rs2236700	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	105	172	0	0.57377	0	C|0.764;G|0.236	0.236	strong	.	MC5R	83	.	NM_005913	exon1	c.C627G	p.F209L	CATGTTCCTCCTG	.	PASS	Atlas-SNP
OR4K17	390436	hgsc.bcm.edu	37	14	20586432	20586432	+	Silent	SNP	C	C	T	rs9323534	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	83	176	0	0.491124	0	C|0.566;T|0.434	0.434	strong	.	OR4K17	58	.	NM_001004715	exon1	c.C867T	p.Y289Y	TATCTACATTTGG	.	PASS	Atlas-SNP
C19orf48	84798	hgsc.bcm.edu	37	19	51301395	51301395	+	Missense_Mutation	SNP	C	C	T	rs4801853	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	58	75	0	0.610526	0	C|0.714;N|0.001	.	strong	.	C19orf48	11	.	NM_199249	exon5	c.G311A	p.G104E	TTCACCCCTGGAG	.	PASS	Atlas-SNP
EML2	24139	hgsc.bcm.edu	37	19	46141845	46141845	+	Missense_Mutation	SNP	T	T	C	rs12151009	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	27	54	0	0.465517	0	T|0.908;C|0.092	0.092	strong	.	EML2	64	.	NM_001193268	exon6	c.A700G	p.M234V	GGATCATCATGGG	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	33842400	33842400	+	Silent	SNP	A	A	T	rs41279202	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	46	66	0	0.446602	0	A|0.970;T|0.030	0.030	strong	.	RYR3	760	.	NM_001243996	exon10	c.A855T	p.R285R	TTTCCGACTCCGG	.	PASS	Atlas-SNP
TMEM216	51259	hgsc.bcm.edu	37	11	61161359	61161359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	91	200	0	0.393939	0	.	.	none	.	TMEM216	14	.	NM_001173990	exon3	c.T140C	p.V47A	CAGGTGTCCTGCT	.	PASS	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14752957	14752957	+	Silent	SNP	G	G	A	rs12457503	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	43	114	0	0.425743	0	G|0.493;A|0.507	0.507	strong	ANKRD30B_ENST00000358984,NS,carcinoma,+2,2	ANKRD30B	237	2	NM_001145029	exon3	c.G456A	p.L152L	GAATTTGTTAATG	.	PASS	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	37	5	52214581	52214581	+	Missense_Mutation	SNP	G	G	A	rs2279587	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	76	195	0	0.506667	0	G|0.928;A|0.072	0.072	strong	ITGA1,NS,carcinoma,0,1	ITGA1	112	1	NM_181501	exon16	c.G2008A	p.V670I	GCCGTAGTTAAAG	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39580562	39580562	+	Missense_Mutation	SNP	T	T	C	rs9916484	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	45	131	0	0.416667	0	T|0.611;C|0.389	0.389	strong	.	KRT37	61	.	NM_003770	exon1	c.A214G	p.T72A	GACTGGTTGGGGG	.	PASS	Atlas-SNP
MYO19	80179	hgsc.bcm.edu	37	17	34854280	34854280	+	Missense_Mutation	SNP	G	G	A	rs2306590	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	53	77	0	0.540816	0	G|0.695;A|0.305	0.305	strong	MYO19_ENST00000431794,NS,carcinoma,0,1	MYO19	130	1	NM_001163735	exon26	c.C2587T	p.L863F	GCCAGAGGCGGAT	.	PASS	Atlas-SNP
ETV7	51513	hgsc.bcm.edu	37	6	36341294	36341294	+	Silent	SNP	C	C	T	rs3213530	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	64	131	0	0.496124	0	C|0.813;T|0.187	0.187	strong	.	ETV7	31	.	NM_001207035	exon4	c.G369A	p.G123G	AAAGGGCCCACAC	.	PASS	Atlas-SNP
C2orf91	400950	hgsc.bcm.edu	37	2	42165754	42165754	+	Splice_Site	SNP	C	C	T	rs10192292	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	97	160	0	0.573964	0	C|0.732;T|0.268	0.268	strong	.	.	.	.	NM_001242815	exon5	c.386-1G>A	.	TGGAACCTGCAAG	.	PASS	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	37	3	47043538	47043538	+	Silent	SNP	C	C	T	rs2305634	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	71	54	1	1	0.0185185	C|0.518;G|0.000;T|0.481	0.481	strong	NBEAL2_ENST00000450053,NS,carcinoma,0,4	NBEAL2	267	4	NM_015175	exon31	c.C4911T	p.S1637S	CTCTTCCTTGGAG	.	scavenged	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	37	19	36349736	36349736	+	Silent	SNP	G	G	C	rs34006827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	97	227	0	0.409283	0	G|0.963;C|0.037	0.037	strong	.	KIRREL2	170	.	NM_199180	exon4	c.G492C	p.G164G	AGATGGGGTCCTG	.	PASS	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	37	12	4554413	4554413	+	Silent	SNP	C	C	T	rs11611403	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	31	54	0	0.476923	0	C|0.833;T|0.167	0.167	strong	.	FGF6	40	.	NM_020996	exon1	c.G324A	p.G108G	GTGGGTCCCGCTG	.	PASS	Atlas-SNP
TKT	7086	hgsc.bcm.edu	37	3	53269046	53269046	+	Silent	SNP	T	T	C	rs1051485	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	59	117	0	0.427536	0	T|0.837;C|0.163	0.163	strong	.	TKT	38	.	NM_001258028	exon6	c.A606G	p.P202P	CTGCAGTGGGGCC	.	PASS	Atlas-SNP
CCL4	6351	hgsc.bcm.edu	37	17	34432664	34432664	+	Missense_Mutation	SNP	T	T	A	rs1719152	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	450	241	437	1	0.535556	0.00228833	T|0.845;A|0.155	0.155	strong	.	CCL4	14	.	NM_002984	exon3	c.T238A	p.S80T	AGTGAATCCTGGG	.	PASS	Atlas-SNP
FBXL13	222235	hgsc.bcm.edu	37	7	102665620	102665620	+	Missense_Mutation	SNP	C	C	G	rs61749912	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	50	120	0	0.434783	0	C|0.935;G|0.065	0.065	strong	.	FBXL13	65	.	NM_001111038	exon6	c.G385C	p.A129P	CAGCAGCTCTTTT	.	PASS	Atlas-SNP
EDNRA	1909	hgsc.bcm.edu	37	4	148461037	148461037	+	Silent	SNP	T	T	C	rs5333	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	101	180	0	0.497537	0	T|0.642;C|0.358	0.358	strong	.	EDNRA	48	.	NM_001957	exon6	c.T969C	p.H323H	TCTTCATTTAAGC	.	PASS	Atlas-SNP
HS3ST6	64711	hgsc.bcm.edu	37	16	1961674	1961674	+	Missense_Mutation	SNP	G	G	C	rs337285	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	20	18	0	1	0	G|0.448;C|0.552	0.552	strong	.	HS3ST6	26	.	NM_001009606	exon2	c.C853G	p.L285V	GGACCAGGGCCTG	.	PASS	Atlas-SNP
UNC45A	55898	hgsc.bcm.edu	37	15	91496233	91496233	+	Missense_Mutation	SNP	G	G	A	rs149872991	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	27	42	0	0.55102	0	G|1.000;A|0.000	0.000	strong	.	UNC45A	57	.	NM_018671	exon18	c.G2378A	p.R793Q	TCCGCCGGGCAGC	.	PASS	Atlas-SNP
EEA1	8411	hgsc.bcm.edu	37	12	93202801	93202801	+	Silent	SNP	C	C	T	rs7970286	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	61	89	0	0.530435	0	C|0.618;T|0.382	0.382	strong	.	EEA1	104	.	NM_003566	exon18	c.G2331A	p.E777E	TTCCTTCTCCATT	.	PASS	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	37	1	248512094	248512094	+	Silent	SNP	C	C	T	rs28728105	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	74	162	0	0.411111	0	C|0.513;T|0.487	0.487	strong	.	OR14C36	113	.	NM_001001918	exon1	c.C18T	p.T6T	AACCACCGTGATG	.	PASS	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	37	7	150915948	150915948	+	Silent	SNP	C	C	T	rs7782699	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	48	84	0	0.475248	0	C|0.909;T|0.091	0.091	strong	.	ABCF2	54	.	NM_007189	exon9	c.G1029A	p.A343A	AAACCTCGCAATG	.	PASS	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	37	2	102781629	102781629	+	Silent	SNP	G	G	A	rs3917286	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	89	198	0	0.478495	0	G|0.984;A|0.016	0.016	strong	.	IL1R1	52	.	NM_000877	exon4	c.G351A	p.E117E	GAATGAGCCTAAC	.	PASS	Atlas-SNP
ZSCAN22	342945	hgsc.bcm.edu	37	19	58849789	58849789	+	Silent	SNP	G	G	A	rs368211476	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	59	113	0	0.487603	0	.	.	weak	ZSCAN22,NS,carcinoma,+1,1	ZSCAN22	47	1	NM_181846	exon3	c.G573A	p.G191G	ATCAGGGGAGATC	.	PASS	Atlas-SNP
KRTAP9-3	83900	hgsc.bcm.edu	37	17	39388811	39388811	+	Missense_Mutation	SNP	C	C	A	rs112082369	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	47	91	0	0.415929	0	C|0.828;A|0.172	0.172	strong	.	KRTAP9-3	11	.	NM_031962	exon1	c.C58A	p.Q20K	TGCTGGCAGCCCA	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1084362	1084362	+	Missense_Mutation	SNP	G	G	A	rs11245936	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	67	159	1	0.446667	0.00628931	G|0.945;A|0.055	0.055	strong	MUC2_ENST00000441003,mouth,carcinoma,0,2	MUC2	614	2	NM_002457	exon19	c.G2494A	p.G832S	TCTTCCGGCGCCA	.	scavenged	Atlas-SNP
IL12B	3593	hgsc.bcm.edu	37	5	158750329	158750329	+	Missense_Mutation	SNP	C	C	T	rs3213096	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	34	45	0	0.523077	0	C|0.994;T|0.006	0.006	strong	.	IL12B	30	.	NM_002187	exon3	c.G97A	p.V33I	ATTCTACGACATA	.	PASS	Atlas-SNP
AASDH	132949	hgsc.bcm.edu	37	4	57211352	57211352	+	Missense_Mutation	SNP	T	T	C	rs12498340	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	87	162	0	0.514793	0	T|0.830;C|0.170	0.170	strong	.	AASDH	101	.	NM_181806	exon12	c.A2593G	p.T865A	CTGTGGTTGGATC	.	PASS	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	37	13	26043182	26043182	+	Silent	SNP	A	A	C	rs7317185	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	38	85	0	0.44186	0	A|0.790;C|0.210	0.210	strong	ATP8A2,colon,carcinoma,0,1	ATP8A2	181	1	NM_016529	exon2	c.A144C	p.G48G	TGTTGGAGACCAG	.	PASS	Atlas-SNP
NIN	51199	hgsc.bcm.edu	37	14	51204996	51204996	+	Silent	SNP	C	C	T	rs11376	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	204	201	1	0.995122	0.00497512	C|0.452;T|0.548	0.548	strong	.	NIN	475	.	NM_020921	exon27	c.G5637A	p.Q1879Q	TTCCAACTGACGG	.	PASS	Atlas-SNP
DMWD	1762	hgsc.bcm.edu	37	19	46289503	46289503	+	Silent	SNP	C	C	T	rs8109951	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	40	36	0	0.481928	0	C|0.701;T|0.299	0.299	strong	DMWD,rectum,carcinoma,0,1	DMWD	46	1	NM_004943	exon3	c.G1251A	p.P417P	AGAGAGCGGGGCG	.	PASS	Atlas-SNP
REP15	387849	hgsc.bcm.edu	37	12	27850113	27850113	+	Missense_Mutation	SNP	A	A	T	rs12819160	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	23	62	0	0.383333	0	A|0.877;T|0.123	0.123	strong	.	REP15	13	.	NM_001029874	exon1	c.A618T	p.E206D	AACTGAAGATTGT	.	PASS	Atlas-SNP
ADAM9	8754	hgsc.bcm.edu	37	8	38854660	38854660	+	Silent	SNP	C	C	A	rs148707472	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	19	23	0	0.558824	0	C|0.964;A|0.036	0.036	strong	.	ADAM9	66	.	NM_003816	exon1	c.C78A	p.V26V	CCCAGTCCTCGGT	.	PASS	Atlas-SNP
CCZ1B	221960	hgsc.bcm.edu	37	7	6844574	6844574	+	Missense_Mutation	SNP	C	C	G	rs75680229	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	472	207	8	0	0.438559	0	C|0.694;G|0.306	0.306	strong	.	.	.	.	NM_198097	exon12	c.G1101C	p.M367I	CCCAGACATCCTC	.	PASS	Atlas-SNP
GRK7	131890	hgsc.bcm.edu	37	3	141535608	141535608	+	Missense_Mutation	SNP	C	C	A	rs33928105	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	129	137	1	1	0.00729927	C|0.899;A|0.101	0.101	strong	.	GRK7	65	.	NM_139209	exon4	c.C1378A	p.P460T	AACTTTCCTCGCC	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113241088	113241088	+	Missense_Mutation	SNP	T	T	G	rs1592624	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	51	32	0	0.980769	0	G|0.698;N|0.000	0.698	strong	CSMD3_ENST00000343508,caecum,carcinoma,0,4	CSMD3	2325	4	NM_198123	exon70	c.A10861C	p.N3621H	GTTGATTTGAAGA	.	PASS	Atlas-SNP
IL2RB	3560	hgsc.bcm.edu	37	22	37524619	37524619	+	Missense_Mutation	SNP	G	G	T	rs228942	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	77	61	0	0.974684	0	G|0.839;T|0.161	0.161	strong	.	IL2RB	44	.	NM_000878	exon10	c.C1173A	p.D391E	ATCAGGGTCTTCC	.	PASS	Atlas-SNP
PLEKHG7	440107	hgsc.bcm.edu	37	12	93150102	93150102	+	Missense_Mutation	SNP	T	T	C	rs924326	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	400	191	355	0	0.4775	0	T|0.427;C|0.573	0.573	strong	.	PLEKHG7	38	.	NM_001004330	exon8	c.T635C	p.M212T	AACACATGGCAGA	.	PASS	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	37	9	90265015	90265015	+	Silent	SNP	C	C	T	rs3818584	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	35	53	0	0.492958	0	C|0.634;T|0.365	0.365	strong	DAPK1_ENST00000408954,NS,carcinoma,0,4	DAPK1	329	4	NM_004938	exon16	c.C1608T	p.D536D	AGCCGACCTTAAT	.	PASS	Atlas-SNP
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46011720	46011720	+	Missense_Mutation	SNP	G	G	A	rs9977124	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	311	12	273	2	0.0385852	0.00732601	G|0.968;A|0.032	0.032	strong	KRTAP10-6,caecum,carcinoma,0,1	KRTAP10-6	57	1	NM_198688	exon1	c.C646T	p.P216S	AAGTTGGCTGGCA	.	scavenged	Atlas-SNP
SLC39A11	201266	hgsc.bcm.edu	37	17	70645032	70645032	+	Missense_Mutation	SNP	G	G	A	rs61736066	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	31	49	0	0.659574	0	G|0.911;A|0.089	0.089	strong	.	SLC39A11	32	.	NM_001159770	exon9	c.C860T	p.A287V	GGCTCAGCCAGCA	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	6993673	6993673	+	Missense_Mutation	SNP	T	T	C	rs62081533	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	115	200	0	0.481172	0	T|0.834;C|0.166	0.166	strong	.	LAMA1	458	.	NM_005559	exon35	c.A4975G	p.I1659V	TGGCTATGGCCAG	.	PASS	Atlas-SNP
ORAI1	84876	hgsc.bcm.edu	37	12	122079441	122079441	+	Silent	SNP	T	T	C	rs3825175	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	56	115	0	0.386207	0	T|0.470;C|0.530	0.530	strong	.	ORAI1	66	.	NM_032790	exon2	c.T804C	p.T268T	TAAGACTGACCGA	.	PASS	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	37	17	29221584	29221584	+	Missense_Mutation	SNP	A	A	G	rs114345202	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	21	44	0	0.5	0	A|0.994;G|0.006	0.006	strong	.	ATAD5	150	.	NM_024857	exon22	c.A5300G	p.N1767S	ACAGCAATGCTTG	.	PASS	Atlas-SNP
HNRPDL	9987	hgsc.bcm.edu	37	4	83347266	83347266	+	Silent	SNP	A	A	G	rs79373393	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	69	156	0	0.469388	0	A|0.975;G|0.025	0.025	strong	.	HNRPDL	35	.	NM_031372	exon7	c.T1209C	p.Y403Y	CTTGCCATAAGTG	.	PASS	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55143395	55143395	+	Missense_Mutation	SNP	T	T	G	rs370374304		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	46	99	0	0.422018	0	.	.	weak	.	LILRB1	140	.	NM_001081637	exon5	c.T368G	p.I123S	CCTACATCAAACC	.	PASS	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	37	19	5455978	5455978	+	Missense_Mutation	SNP	T	T	C	rs8107825	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	23	19	0	1	0	T|0.460;C|0.540	0.540	strong	.	ZNRF4	59	.	NM_181710	exon1	c.T476C	p.V159A	CCATCGTGCTGAT	.	PASS	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	37	3	186459646	186459646	+	Silent	SNP	G	G	A	rs5030085	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	44	88	0	0.396396	0	G|0.965;A|0.035	0.035	strong	.	KNG1	129	.	NM_001102416	exon10	c.G1461A	p.G487G	CCAAGGGGGCCAT	.	PASS	Atlas-SNP
GAS8	2622	hgsc.bcm.edu	37	16	90106746	90106746	+	Silent	SNP	C	C	T	rs61734731	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	18	39	0	0.473684	0	C|0.963;T|0.037	0.037	strong	GAS8,NS,carcinoma,0,1	GAS8	29	1	NM_001481	exon9	c.C1050T	p.T350T	GTTCACCGCAGCC	.	PASS	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	37	16	2327929	2327929	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	44	78	0	0.44898	0	.	.	none	.	ABCA3	176	.	NM_001089	exon31	c.A4860G	p.Q1620Q	CTCCTGTTGCCCT	.	PASS	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	37	15	90281278	90281278	+	Missense_Mutation	SNP	A	A	C	rs35365973	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	43	80	0	0.551282	0	A|0.966;C|0.034	0.034	strong	.	WDR93	63	.	NM_020212	exon16	c.A1772C	p.Y591S	GAGACTATTCACA	.	PASS	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	37	5	26885964	26885964	+	Silent	SNP	T	T	G	rs35328154	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	28	67	0	0.466667	0	T|0.992;G|0.008	0.008	strong	.	CDH9	305	.	NM_016279	exon11	c.A1641C	p.A547A	GATTCCTGCTGTA	.	PASS	Atlas-SNP
TPH2	121278	hgsc.bcm.edu	37	12	72416235	72416235	+	Silent	SNP	A	A	T	rs4290270	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	111	100	0	0.991071	0	A|0.450;T|0.550	0.550	strong	.	TPH2	81	.	NM_173353	exon9	c.A1125T	p.A375A	GCGGGCATATGGA	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	145015877	145015877	+	Missense_Mutation	SNP	G	G	T	rs77741369	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	31	224	0	0.115242	0	G|0.821;T|0.179	0.179	strong	PDE4DIP_ENST00000369348,NS,carcinoma,0,2	PDE4DIP	817	2	NM_022359	exon3	c.C424A	p.L142I	CTCGAAGAGCCTG	.	PASS	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	37	10	85992511	85992511	+	Silent	SNP	T	T	C	rs3814209	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	68	128	1	0.527132	0.0078125	T|0.496;C|0.503	0.503	strong	LRIT1,right_upper_lobe,carcinoma,-1,1	LRIT1	73	1	NM_015613	exon4	c.A1044G	p.P348P	AGTCGGTGGCTCA	.	scavenged	Atlas-SNP
OR5V1	81696	hgsc.bcm.edu	37	6	29323276	29323276	+	Missense_Mutation	SNP	C	C	T	rs61742983	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	30	45	0	0.714286	0	C|0.940;T|0.060	0.060	strong	.	OR5V1	63	.	NM_030876	exon1	c.G697A	p.G233R	GTCTTCCCTCTGA	.	PASS	Atlas-SNP
EIF4ENIF1	56478	hgsc.bcm.edu	37	22	31838085	31838085	+	Silent	SNP	G	G	A	rs5997988	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	79	195	0	0.470238	0	G|0.611;A|0.389	0.389	strong	.	EIF4ENIF1	80	.	NM_019843	exon17	c.C2226T	p.S742S	TACAGAGCTGGAT	.	PASS	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	37	19	58002924	58002924	+	Missense_Mutation	SNP	G	G	A	rs145680611	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	227	95	209	0	0.418502	0	G|0.983;A|0.017	0.017	strong	ZNF419_ENST00000424930,colon,carcinoma,0,8	ZNF419	134	8	NM_001098494	exon3	c.G161A	p.R54H	TCTACCGCAATGT	.	PASS	Atlas-SNP
PHYHD1	254295	hgsc.bcm.edu	37	9	131689361	131689361	+	Silent	SNP	G	G	A	rs751340	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	170	185	1	0.994152	0.00540541	G|0.615;A|0.385	0.385	strong	PHYHD1,caecum,carcinoma,+1,2	PHYHD1	29	2	NM_001100877	exon2	c.G78A	p.A26A	GTCTGCGGAAGAG	.	PASS	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235952009	235952009	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	2	137	0	0.0143885	0	.	.	none	LYST,bladder,carcinoma,-2,1	LYST	370	1	NM_000081	exon13	c.T4680C	p.L1560L	AAAGATAAGAGTG	.	scavenged	Atlas-SNP
ANTXR2	118429	hgsc.bcm.edu	37	4	80905991	80905991	+	Silent	SNP	G	G	T	rs72653288	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	101	197	0	0.437229	0	C|0.000;G|0.947;T|0.053	0.053	strong	.	ANTXR2	97	.	NM_001145794	exon13	c.C1068A	p.P356P	AGGGGCGGGTGGT	.	PASS	Atlas-SNP
CCDC27	148870	hgsc.bcm.edu	37	1	3677933	3677933	+	Missense_Mutation	SNP	T	T	C	rs1181883	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	85	185	0	0.438144	0	T|0.530;C|0.470	0.470	strong	.	CCDC27	79	.	NM_152492	exon5	c.T800C	p.M267T	TGAAGATGCAGCT	.	PASS	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	37	16	2165395	2165395	+	Missense_Mutation	SNP	G	G	A	rs138575342	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	34	61	0	0.283333	0	.	.	weak	PKD1,NS,carcinoma,0,1	PKD1	184	1	NM_000296	exon10	c.C2081T	p.P694L	GCGGGGGGCCCCG	.	scavenged	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	37	3	148872987	148872987	+	Silent	SNP	G	G	A	rs6440589	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	44	99	0	0.478261	0	G|0.497;A|0.503	0.503	strong	.	HPS3	104	.	NM_032383	exon8	c.G1494A	p.Q498Q	AGTGCAGCTGTAC	.	PASS	Atlas-SNP
CD109	135228	hgsc.bcm.edu	37	6	74497009	74497009	+	Missense_Mutation	SNP	A	A	G	rs2351528	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	67	45	0	0.985294	0	A|0.597;G|0.403	0.403	strong	CD109,caecum,carcinoma,0,1	CD109	170	1	NM_133493	exon21	c.A2390G	p.N797S	CTTCAAATGAAAT	.	PASS	Atlas-SNP
HSD3B2	3284	hgsc.bcm.edu	37	1	119964933	119964933	+	Missense_Mutation	SNP	T	T	C	rs75429891	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	72	154	0	0.423529	0	T|1.000;C|0.000	0.000	strong	.	HSD3B2	48	.	NM_001166120	exon4	c.T809C	p.I270T	ATTACATCCTGAG	.	PASS	Atlas-SNP
EXTL3	2137	hgsc.bcm.edu	37	8	28574803	28574803	+	Silent	SNP	G	G	A	rs240951	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	55	75	0	0.491071	0	A|0.256;C|0.004	0.256	strong	.	EXTL3	83	.	NM_001440	exon3	c.G1227A	p.P409P	CCTGCCGACTGAG	.	PASS	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	37	15	90260145	90260145	+	Missense_Mutation	SNP	T	T	A	rs7163367	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	50	78	0	0.943396	0	A|0.415;N|0.000	0.415	strong	WDR93,NS,carcinoma,-1,2	WDR93	63	2	NM_020212	exon7	c.T760A	p.S254T	CAGAACTCCCTTG	.	PASS	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	37	20	31673846	31673846	+	Missense_Mutation	SNP	A	A	G	rs2070325	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	43	73	0	0.551282	0	A|0.615;G|0.385	0.385	strong	.	.	.	.	NM_182519	exon5	c.A802G	p.I268V	CTGGACATCGCAG	.	PASS	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	37	22	18379640	18379640	+	Silent	SNP	C	C	T	rs61739477	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	34	64	0	0.507463	0	C|0.987;T|0.013	0.013	strong	.	MICAL3	53	.	NM_015241	exon8	c.G1056A	p.P352P	CAGAGACGGCAGC	.	PASS	Atlas-SNP
HLX	3142	hgsc.bcm.edu	37	1	221057831	221057831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	3	164	0	0.0208333	0	.	.	none	HLX,NS,carcinoma,0,1	HLX	67	1	NM_021958	exon4	c.G1252A	p.A418T	ATTACCGCCAGCA	.	scavenged	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	37	1	19615051	19615051	+	Missense_Mutation	SNP	C	C	G	rs201237444	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	46	125	0	0.223301	0	C|0.996;G|0.004	0.004	weak	AKR7A3,NS,carcinoma,0,1	AKR7A3	30	1	NM_012067	exon1	c.G153C	p.E51D	CTGGCCCTCGCTG	.	PASS	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57971195	57971195	+	Silent	SNP	G	G	A	rs11229279	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	99	228	0	0.392857	0	G|0.677;A|0.323	0.323	strong	OR1S2,caecum,carcinoma,-2,2	OR1S2	119	2	NM_001004459	exon1	c.C459T	p.F153F	AGTGCCGAACCTG	.	PASS	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	37	17	80151881	80151881	+	Silent	SNP	G	G	A	rs4789722	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	21	25	0	0.617647	0	G|0.414;A|0.586	0.586	strong	.	CCDC57	102	.	NM_198082	exon5	c.C753T	p.D251D	CTCCAGGTCCTGG	.	PASS	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	154561188	154561188	+	Silent	SNP	C	C	T	rs56091483	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	60	116	0	0.47619	0	C|0.910;T|0.090	0.090	strong	.	DPP6	383	.	NM_130797	exon9	c.C945T	p.Y315Y	CGCCTACGCCGCC	.	PASS	Atlas-SNP
FUT2	2524	hgsc.bcm.edu	37	19	49206985	49206985	+	Missense_Mutation	SNP	G	G	A	rs602662	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	63	153	0	0.425676	0	G|0.559;A|0.441	0.441	strong	.	FUT2	30	.	NM_001097638	exon2	c.G772A	p.G258S	TCCCACGGTGATG	.	PASS	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	37	10	95931087	95931087	+	Missense_Mutation	SNP	G	G	T	rs17417407	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	106	197	0	0.447257	0	G|0.828;N|0.001	.	strong	.	PLCE1	543	.	NM_016341	exon4	c.G1643T	p.R548L	TTTACCGCAGGGT	.	PASS	Atlas-SNP
LIPH	200879	hgsc.bcm.edu	37	3	185229464	185229464	+	Silent	SNP	T	T	C	rs61730237	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	35	55	0	0.564516	0	T|0.597;C|0.403	0.403	strong	.	LIPH	56	.	NM_139248	exon9	c.A1116G	p.K372K	GTGATATTTCTGA	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3738649	3738649	+	Silent	SNP	A	A	C	rs599587	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	36	90	0	0.391304	0	A|0.306;C|0.694	0.694	strong	.	TJP3	79	.	NM_001267561	exon12	c.A1408C	p.R470R	ACGCAGAGGAAGC	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52774305	52774305	+	Silent	SNP	A	A	G	rs1732293	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	44	82	0	0.396396	0	A|0.682;G|0.318	0.318	strong	.	KRT84	61	.	NM_033045	exon7	c.T1266C	p.D422D	TTTGGCATCACTG	.	PASS	Atlas-SNP
MBD1	4152	hgsc.bcm.edu	37	18	47800179	47800179	+	Missense_Mutation	SNP	G	G	C	rs125555	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	23	52	0	0.511111	0	G|0.819;C|0.181	0.181	strong	.	MBD1	228	.	NM_001204137	exon13	c.C1276G	p.P426A	AAGGTGGGGGCGA	.	PASS	Atlas-SNP
SEMA4C	54910	hgsc.bcm.edu	37	2	97532152	97532152	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	2	126	0	0.0134228	0	.	.	none	SEMA4C,caecum,carcinoma,-2,1	SEMA4C	56	1	NM_017789	exon3	c.A126G	p.V42V	CCGCCGTACTACC	.	scavenged	Atlas-SNP
TXNDC8	255220	hgsc.bcm.edu	37	9	113091523	113091523	+	Missense_Mutation	SNP	T	T	G	rs7041938	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	12	28	0	0.342857	0	T|0.904;G|0.096	0.096	strong	.	TXNDC8	30	.	NM_001003936	exon3	c.A178C	p.N60H	AATTGTTCACATC	.	PASS	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	37	21	43982247	43982247	+	Silent	SNP	C	C	A	rs77485357	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	87	151	0	0.530488	0	C|0.968;A|0.032	0.032	strong	.	SLC37A1	48	.	NM_018964	exon13	c.C1041A	p.L347L	TTTCCTCTTCTGG	.	PASS	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	37	22	17446157	17446157	+	Silent	SNP	G	G	T	rs1541529	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	81	142	0	0.45	0	G|0.960;T|0.040	0.040	strong	.	GAB4	95	.	NM_001037814	exon7	c.C1290A	p.A430A	TGGGTTGGCTGGA	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24419496	24419496	+	Missense_Mutation	SNP	A	A	G	rs4233050	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	20	23	0	0.434783	0	A|0.582;G|0.418	0.418	strong	.	MYOM3	131	.	NM_152372	exon10	c.T1031C	p.M344T	CGGACCATGTAGA	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7817665	7817665	+	Silent	SNP	T	T	C	rs72484720	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	233	209	1	0.987288	0.00478469	T|0.738;C|0.262	0.262	strong	.	OR5P2	68	.	NM_153444	exon1	c.A825G	p.T275T	CACCACTGTGTAC	.	PASS	Atlas-SNP
EVC	2121	hgsc.bcm.edu	37	4	5721049	5721049	+	Silent	SNP	A	A	G	rs35870680	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	67	127	0	0.471831	0	A|0.893;G|0.107	0.107	strong	.	EVC	90	.	NM_153717	exon2	c.A249G	p.S83S	CCCATCAAGGAGG	.	PASS	Atlas-SNP
GAS6	2621	hgsc.bcm.edu	37	13	114524944	114524944	+	Silent	SNP	A	A	G	rs7400002	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	20	45	0	1	0	A|0.641;G|0.359	0.359	strong	GAS6_ENST00000327773,NS,carcinoma,0,1	GAS6	75	1	NM_000820	exon14	c.T1869C	p.A623A	GCCGCCAGCAAAG	.	PASS	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	37	6	47846603	47846603	+	Silent	SNP	C	C	T	rs41273690	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	24	58	0	0.436364	0	C|0.965;T|0.035	0.035	strong	.	.	.	.	NM_001013732	exon3	c.G1977A	p.V659V	AACAGGCACTGTG	.	PASS	Atlas-SNP
APOL1	8542	hgsc.bcm.edu	37	22	36661842	36661842	+	Silent	SNP	G	G	A	rs136177	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	51	121	0	0.495146	0	G|0.164;A|0.836	0.836	strong	.	APOL1	35	.	NM_145343	exon7	c.G1008A	p.R336R	GGAGAGGGTTAAT	.	PASS	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	154681050	154681050	+	Silent	SNP	C	C	T	rs1129300	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	59	145	0	0.430657	0	C|0.837;G|0.000;T|0.163	0.163	strong	DPP6,NS,carcinoma,0,1	DPP6	383	1	NM_130797	exon24	c.C2373T	p.A791A	CACTGCCGATGGT	.	PASS	Atlas-SNP
EIF2AK1	27102	hgsc.bcm.edu	37	7	6066450	6066450	+	Missense_Mutation	SNP	T	T	C	rs2640	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	66	139	0	0.431373	0	T|0.918;C|0.082	0.082	strong	EIF2AK1,NS,carcinoma,0,1	EIF2AK1	76	1	NM_014413	exon14	c.A1673G	p.K558R	ATATACTTGGCTT	.	PASS	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2983971	2983971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	273	3	276	2	0.010989	0.00724638	.	.	none	CARD11,NS,carcinoma,0,1	CARD11	339	1	NM_032415	exon5	c.C559T	p.R187W	TGTCCCGCTCTTC	.	scavenged	Atlas-SNP
DNAI1	27019	hgsc.bcm.edu	37	9	34500821	34500821	+	Missense_Mutation	SNP	G	G	A	rs11793196	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	43	83	0	0.565789	0	G|0.812;A|0.188	0.188	strong	.	DNAI1	72	.	NM_012144	exon11	c.G1003A	p.V335I	CTGTCCGTCACTG	.	PASS	Atlas-SNP
KBTBD6	89890	hgsc.bcm.edu	37	13	41705897	41705897	+	Missense_Mutation	SNP	G	G	C	rs150633583	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	270	4	273	3	0.0148148	0.010989	G|0.998;C|0.002	0.002	strong	KBTBD6,trunk,malignant_melanoma,0,2	KBTBD6	83	2	NM_152903	exon1	c.C751G	p.P251A	CTTTGGGAGCAGC	.	scavenged	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371106	240371106	+	Silent	SNP	C	C	T	rs11586155	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	57	86	0	0.463415	0	C|0.783;T|0.217	0.217	strong	.	FMN2	451	.	NM_020066	exon5	c.C2994T	p.P998P	CATACCCCCTCCG	.	PASS	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234529570	234529570	+	Silent	SNP	G	G	A	rs2175593	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	39	135	0	0.351351	0	G|0.519;A|0.481	0.481	strong	.	TARBP1	111	.	NM_005646	exon27	c.C4257T	p.V1419V	TGCTTCGACCAAA	.	PASS	Atlas-SNP
EML3	256364	hgsc.bcm.edu	37	11	62378801	62378801	+	Silent	SNP	T	T	C	rs11553576	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	32	78	0	0.581818	0	T|0.718;C|0.282	0.282	strong	.	EML3	61	.	NM_153265	exon3	c.A210G	p.P70P	CAGTCCTGGGGGG	.	PASS	Atlas-SNP
KRT28	162605	hgsc.bcm.edu	37	17	38955173	38955173	+	Silent	SNP	G	G	A	rs7222207	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	95	194	0	0.46798	0	G|0.838;A|0.162	0.162	strong	.	KRT28	65	.	NM_181535	exon2	c.C529T	p.L177L	ACTTTAGCCTGAA	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4935985	4935985	+	Missense_Mutation	SNP	C	C	G	rs35869286	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	36	59	0	0.553846	0	C|0.942;G|0.058	0.058	strong	PPL,NS,carcinoma,0,1	PPL	168	1	NM_002705	exon22	c.G2671C	p.E891Q	ACGCCTCCTCCAC	.	PASS	Atlas-SNP
SLC9A8	23315	hgsc.bcm.edu	37	20	48491258	48491258	+	Silent	SNP	T	T	G	rs542234	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	288	287	290	0	0.996528	0	T|0.200;G|0.800	0.800	strong	.	SLC9A8	63	.	NM_001260491	exon11	c.T1023G	p.L341L	CATCCTTTTCTCA	.	PASS	Atlas-SNP
MPHOSPH10	10199	hgsc.bcm.edu	37	2	71360625	71360625	+	Missense_Mutation	SNP	G	G	T	rs1813160	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	338	164	354	1	0.485207	0.00282486	G|0.673;T|0.327	0.327	strong	.	MPHOSPH10	81	.	NM_005791	exon2	c.G687T	p.E229D	TGATGAGGAGGAG	.	PASS	Atlas-SNP
LTF	4057	hgsc.bcm.edu	37	3	46501268	46501268	+	Missense_Mutation	SNP	C	C	T	rs1126477	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	87	186	1	0.460317	0.00537634	C|0.578;T|0.421	0.421	strong	LTF,NS,carcinoma,+2,1	LTF	98	1	NM_002343	exon2	c.G85A	p.A29T	ATACGGCGCACCA	.	scavenged	Atlas-SNP
SCARB1	949	hgsc.bcm.edu	37	12	125284748	125284748	+	Silent	SNP	A	A	G	rs5888	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	96	0	1	0	T|0.004;G|0.645	0.645	strong	.	SCARB1	40	.	NM_005505	exon8	c.T1050C	p.A350A	CGGGTCAGCGTTG	.	PASS	Atlas-SNP
MEGF9	1955	hgsc.bcm.edu	37	9	123367681	123367681	+	Silent	SNP	C	C	G	rs56019987	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	114	207	0	0.481013	0	C|0.936;G|0.064	0.064	strong	.	MEGF9	33	.	NM_001080497	exon6	c.G1596C	p.V532V	AGCCCCCACAAAT	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13913885	13913885	+	Silent	SNP	A	A	G	rs3213936	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	37	98	0	0.445783	0	A|0.439;G|0.561	0.561	strong	.	DNAH5	868	.	NM_001369	exon11	c.T1503C	p.I501I	CCCTTCAATTGTG	.	PASS	Atlas-SNP
HELQ	113510	hgsc.bcm.edu	37	4	84370091	84370091	+	Silent	SNP	A	A	G	rs13141136	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	21	71	0	0.328125	0	A|0.654;G|0.346	0.346	strong	.	HELQ	95	.	NM_133636	exon3	c.T1036C	p.L346L	AATTCAATGTTAA	.	PASS	Atlas-SNP
NR1H3	10062	hgsc.bcm.edu	37	11	47282024	47282024	+	Silent	SNP	C	C	T	rs2279238	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	39	92	0	0.428571	0	C|0.733;T|0.267	0.267	strong	.	NR1H3	52	.	NM_001251934	exon4	c.C315T	p.S105S	ATGCAGCGTGTGT	.	PASS	Atlas-SNP
TMEM63A	9725	hgsc.bcm.edu	37	1	226034774	226034774	+	Silent	SNP	C	C	T	rs2292559	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	67	131	0	0.51938	0	C|0.957;T|0.043	0.043	strong	.	TMEM63A	75	.	NM_014698	exon24	c.G2391A	p.T797T	ACTGCCCGTGGCG	.	PASS	Atlas-SNP
WNT2B	7482	hgsc.bcm.edu	37	1	113063125	113063125	+	Silent	SNP	A	A	G	rs910697	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	33	93	0	0.4125	0	A|0.500;C|0.000;G|0.499;T|0.001	0.499	strong	.	WNT2B	51	.	NM_024494	exon5	c.A1170G	p.Q390Q	GGACCAAACCTGA	.	PASS	Atlas-SNP
SPATC1L	84221	hgsc.bcm.edu	37	21	47581423	47581423	+	Missense_Mutation	SNP	C	C	T	rs14378	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	15	22	0	0.384615	0	C|0.896;T|0.104	0.104	strong	.	.	.	.	NM_001142854	exon5	c.G893A	p.S298N	GGGCTGCTGTGCA	.	PASS	Atlas-SNP
SH3BP2	6452	hgsc.bcm.edu	37	4	2831383	2831383	+	Silent	SNP	T	T	G	rs231399	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	44	83	1	0.556962	0.0120482	T|0.554;G|0.446	0.446	strong	SH3BP2,NS,carcinoma,0,1	SH3BP2	43	1	NM_001145856	exon8	c.T921G	p.A307A	CCTGGCTGCTGAG	.	scavenged	Atlas-SNP
FAM69C	125704	hgsc.bcm.edu	37	18	72103782	72103782	+	Missense_Mutation	SNP	T	T	C	rs2278154	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	50	63	0	0.980392	0	T|0.666;C|0.334	0.334	strong	.	FAM69C	45	.	NM_001044369	exon4	c.A1214G	p.Q405R	AGGAGTTGGCGAA	.	PASS	Atlas-SNP
TNR	7143	hgsc.bcm.edu	37	1	175324711	175324711	+	Silent	SNP	G	G	A	rs61731115	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	62	145	0	0.446043	0	G|0.894;A|0.106	0.106	strong	.	TNR	399	.	NM_003285	exon17	c.C3177T	p.I1059I	CCAGGAGATCAGG	.	PASS	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	37	1	89844035	89844035	+	Missense_Mutation	SNP	T	T	C	rs35837853	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	39	90	0	0.506494	0	T|0.945;C|0.055	0.055	strong	.	GBP6	87	.	NM_198460	exon5	c.T488C	p.V163A	ATGGAGTAGAAGA	.	PASS	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	37	12	114377835	114377835	+	Missense_Mutation	SNP	A	A	G	rs2290788	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	23	76	0	0.315068	0	A|0.832;G|0.168	0.168	strong	.	RBM19	117	.	NM_001146699	exon15	c.T1868C	p.I623T	GCAGTGATTCCGC	.	PASS	Atlas-SNP
FAM107A	11170	hgsc.bcm.edu	37	3	58552997	58552997	+	Missense_Mutation	SNP	C	C	A	rs1043942	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	92	192	0	0.522727	0	G|0.000;C|0.931;A|0.069	0.069	strong	.	FAM107A	33	.	NM_001076778	exon3	c.G265T	p.A89S	GCTTGGCTTCCAG	.	PASS	Atlas-SNP
TMEM260	0	hgsc.bcm.edu	37	14	57075920	57075920	+	Missense_Mutation	SNP	G	G	T	rs17776256	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	107	205	0	0.537688	0	G|0.880;T|0.120	0.120	strong	.	.	.	.	NM_017799	exon6	c.G733T	p.A245S	AATCACGCCCGGT	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201109	24201109	+	Silent	SNP	C	C	T	rs2229580	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	230	106	255	0	0.46087	0	C|0.368;T|0.632	0.632	strong	CNR2,NS,carcinoma,0,1	CNR2	78	1	NM_001841	exon2	c.G999A	p.P333P	GGATCTCGGGGCT	.	PASS	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	37	8	87226700	87226700	+	Missense_Mutation	SNP	A	A	G	rs9656982	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	11	25	0	0.333333	0	A|0.866;G|0.134	0.134	strong	.	SLC7A13	97	.	NM_138817	exon4	c.T1355C	p.M452T	CAAGTCATCTTCT	.	PASS	Atlas-SNP
DPH1	1801	hgsc.bcm.edu	37	17	1940232	1940232	+	Missense_Mutation	SNP	A	A	G	rs1131600	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	30	68	0	0.422535	0	A|0.885;G|0.115	0.115	strong	DPH1,NS,carcinoma,0,1	DPH1	32	1	NM_001383	exon6	c.A677G	p.K226R	TGTCCAAAGAGGT	.	PASS	Atlas-SNP
LY6G5B	58496	hgsc.bcm.edu	37	6	31639979	31639979	+	Missense_Mutation	SNP	C	C	T	rs9267532	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	131	128	0	1	0	C|0.924;T|0.076	0.076	strong	.	LY6G5B	8	.	NM_021221	exon3	c.C526T	p.R176C	GAGCTGCGCCGCA	.	PASS	Atlas-SNP
CNRIP1	25927	hgsc.bcm.edu	37	2	68546449	68546449	+	Silent	SNP	G	G	A	rs13025842	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	35	63	0	0.4375	0	G|0.780;A|0.220	0.220	strong	.	CNRIP1	45	.	NM_001111101	exon1	c.C84T	p.D28D	CTGCCCGTCCACC	.	PASS	Atlas-SNP
ALDH4A1	8659	hgsc.bcm.edu	37	1	19202896	19202896	+	Silent	SNP	G	G	A	rs2230707	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	38	49	0	1	0	G|0.522;A|0.478	0.478	strong	.	ALDH4A1	72	.	NM_003748	exon12	c.C1251T	p.A417A	GCCCCCGGCCAGG	.	PASS	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	37	1	164529120	164529120	+	Missense_Mutation	SNP	G	G	A	rs2275558	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	76	166	0	0.41989	0	G|0.695;A|0.305	0.305	strong	PBX1_ENST00000420696,colon,carcinoma,0,1	PBX1	60	1	NM_001204963	exon1	c.G61A	p.G21S	CACCCCGGCCTGT	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6655433	6655433	+	Silent	SNP	G	G	A	rs997263	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	65	122	0	0.496183	0	G|0.642;A|0.358	0.358	strong	.	DCHS1	277	.	NM_003737	exon3	c.C1902T	p.H634H	ACCGCTGTGGGCA	.	PASS	Atlas-SNP
PYROXD2	84795	hgsc.bcm.edu	37	10	100148176	100148176	+	Missense_Mutation	SNP	A	A	G	rs2147896	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	41	95	0	0.476744	0	T|0.003;G|0.526	0.526	strong	.	PYROXD2	43	.	NM_032709	exon13	c.T1382C	p.M461T	TAGGGCATGTACT	.	PASS	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	37	17	5284719	5284719	+	Silent	SNP	T	T	C	rs1065482	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	35	74	0	0.402299	0	T|0.500;C|0.500	0.500	strong	.	RABEP1	59	.	NM_004703	exon17	c.T2406C	p.N802N	GAAGAATAAAGCT	.	PASS	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	37	1	171755170	171755170	+	Silent	SNP	G	G	A	rs2232818	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	94	154	0	0.546512	0	G|0.680;A|0.320	0.320	strong	.	METTL13	67	.	NM_015935	exon3	c.G1065A	p.S355S	GCTGTCGGCTAGA	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2820745	2820745	+	Silent	SNP	G	G	C	rs667859	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	26	39	0	0.634146	0	G|0.566;C|0.434	0.434	strong	.	CSMD1	1469	.	NM_033225	exon60	c.C9453G	p.L3151L	CTTACGGAGACAC	.	PASS	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	37	9	86504027	86504027	+	Missense_Mutation	SNP	A	A	C	rs146702826	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	85	175	0	0.491329	0	A|0.998;C|0.002	0.002	strong	.	KIF27	103	.	NM_017576	exon7	c.T1951G	p.S651A	CTTCTGATTCTTC	.	PASS	Atlas-SNP
VPS52	6293	hgsc.bcm.edu	37	6	33234454	33234454	+	Silent	SNP	G	G	A	rs34933266	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	45	86	0	0.542169	0	G|0.994;A|0.006	0.006	strong	.	VPS52	56	.	NM_022553	exon12	c.C1161T	p.Y387Y	GAGGGCGTAGTGC	.	PASS	Atlas-SNP
TBC1D15	64786	hgsc.bcm.edu	37	12	72307637	72307637	+	Silent	SNP	C	C	G	rs11178983	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	26	72	0	0.320988	0	C|0.947;G|0.053	0.053	strong	.	TBC1D15	99	.	NM_022771	exon13	c.C1383G	p.S461S	ACTTTCCCCTCTT	.	PASS	Atlas-SNP
CHI3L2	1117	hgsc.bcm.edu	37	1	111783982	111783982	+	Silent	SNP	C	C	A	rs13721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	87	81	0	0.988636	0	A|0.280;C|0.697;T|0.022	0.280	strong	.	CHI3L2	38	.	NM_004000	exon9	c.C952A	p.R318R	ATCACGCGGCTCC	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43531632	43531632	+	Missense_Mutation	SNP	T	T	C	rs220129	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	55	0	1	0	T|0.225;C|0.775	0.775	strong	.	UMODL1	186	.	NM_173568	exon11	c.T2300C	p.I767T	ACTCCATCATGGA	.	PASS	Atlas-SNP
SRPRB	58477	hgsc.bcm.edu	37	3	133524717	133524717	+	Missense_Mutation	SNP	G	G	C	rs1107413	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	58	140	0	0.449612	0	G|0.795;C|0.205	0.205	strong	.	SRPRB	28	.	NM_021203	exon2	c.G25C	p.V9L	CGCCGGGTGGCAG	.	PASS	Atlas-SNP
PEX6	5190	hgsc.bcm.edu	37	6	42933526	42933526	+	Silent	SNP	C	C	T	rs2274515	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	35	58	0	0.479452	0	C|0.937;T|0.063	0.063	strong	.	PEX6	44	.	NM_000287	exon13	c.G2364A	p.V788V	GGCAAACACTGAA	.	PASS	Atlas-SNP
PRKD1	5587	hgsc.bcm.edu	37	14	30066929	30066929	+	Silent	SNP	A	A	G	rs2230505	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	27	33	0	0.529412	0	T|0.088;G|0.396;C|0.100;A|0.416	0.396	strong	.	PRKD1	316	.	NM_002742	exon16	c.T2202C	p.I734I	CTCTCCAATGATC	.	PASS	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	37	11	70331716	70331716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	76	147	0	0.496732	0	.	.	none	.	SHANK2	340	.	NM_133266	exon10	c.C2918G	p.A973G	TAAAGTGCATTGC	.	PASS	Atlas-SNP
FIGNL1	63979	hgsc.bcm.edu	37	7	50514577	50514577	+	Missense_Mutation	SNP	C	C	T	rs10235371	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	50	95	0	0.45045	0	C|0.920;T|0.080	0.080	strong	.	FIGNL1	73	.	NM_001042762	exon4	c.G409A	p.V137M	TTACCACTGATGC	.	PASS	Atlas-SNP
DSC3	1825	hgsc.bcm.edu	37	18	28586964	28586964	+	Silent	SNP	A	A	G	rs1313586	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	64	123	0	0.48855	0	A|0.478;G|0.521	0.521	strong	DSC3,NS,carcinoma,0,1	DSC3	225	1	NM_024423	exon12	c.T1797C	p.P599P	TTCATCAGGATCA	.	PASS	Atlas-SNP
SCP2D1	140856	hgsc.bcm.edu	37	20	18794714	18794714	+	Silent	SNP	C	C	T	rs1053834	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	62	134	0	0.5	0	C|0.788;T|0.212	0.212	strong	.	.	.	.	NM_178483	exon1	c.C255T	p.T85T	GTGGACCATTGAT	.	PASS	Atlas-SNP
CCDC155	147872	hgsc.bcm.edu	37	19	49910869	49910869	+	Missense_Mutation	SNP	C	C	T	rs199889676	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	3	114	0	0.0241935	0	.	.	weak	CCDC155,colon,carcinoma,0,1	CCDC155	46	1	NM_144688	exon12	c.C934T	p.R312C	TCCTAGCGCACTC	.	scavenged	Atlas-SNP
THADA	63892	hgsc.bcm.edu	37	2	43571347	43571347	+	Silent	SNP	G	G	A	rs35422033	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	87	167	0	0.524096	0	G|0.983;A|0.017	0.017	strong	.	THADA	131	.	NM_001083953	exon30	c.C4257T	p.D1419D	TTTGGAGTCTGAG	.	PASS	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	37	5	141052416	141052416	+	Silent	SNP	G	G	T	rs1057371	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	50	93	0	0.446429	0	G|0.915;T|0.085	0.085	strong	.	ARAP3	139	.	NM_022481	exon8	c.C1170A	p.P390P	TGGTTGGGGGGGC	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113252011	113252011	+	Missense_Mutation	SNP	T	T	C	rs74597491	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	89	135	0	0.532934	0	T|0.983;C|0.017	0.017	strong	.	SVEP1	326	.	NM_153366	exon9	c.A1849G	p.I617V	CTCCAATTGGGAA	.	PASS	Atlas-SNP
MTRR	4552	hgsc.bcm.edu	37	5	7897319	7897319	+	Silent	SNP	G	G	A	rs1802059	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	53	125	0	0.427419	0	G|0.703;A|0.297	0.297	strong	MTRR,NS,carcinoma,+1,1	MTRR	74	1	NM_024010	exon14	c.G1992A	p.A664A	GGTGGCGAGAATC	.	PASS	Atlas-SNP
PXN	5829	hgsc.bcm.edu	37	12	120650264	120650264	+	Silent	SNP	G	G	A	rs25664	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	83	157	0	0.466292	0	G|0.980;A|0.020	0.020	strong	.	PXN	69	.	NM_001243756	exon11	c.C1671T	p.T557T	GCGGCCGGTGATG	.	PASS	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	37	11	102573569	102573569	+	Silent	SNP	C	C	A	rs3809018	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	168	149	0	1	0	C|0.870;A|0.130	0.130	strong	.	MMP27	84	.	NM_022122	exon4	c.G534T	p.V178V	GCCAAGCACTCCC	.	PASS	Atlas-SNP
MYRIP	25924	hgsc.bcm.edu	37	3	40286017	40286017	+	Silent	SNP	T	T	C	rs4618168	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	121	274	0	0.480159	0	T|0.418;C|0.582	0.582	strong	.	MYRIP	98	.	NM_015460	exon13	c.T2181C	p.S727S	CCACAGTGGCACT	.	PASS	Atlas-SNP
GRM6	2916	hgsc.bcm.edu	37	5	178408828	178408828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	5	104	0	0.037594	0	.	.	none	GRM6,NS,carcinoma,0,1	GRM6	149	1	NM_000843	exon10	c.G2464A	p.V822M	AGGACACGGTTAG	.	scavenged	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	37	4	144442611	144442611	+	Silent	SNP	T	T	C	rs11100790	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	61	128	0	0.586538	0	A|0.000;C|0.252;T|0.748	0.252	strong	.	SMARCA5	73	.	NM_003601	exon3	c.T282C	p.Y94Y	CGAGTATTTATTA	.	PASS	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	37	12	6707526	6707526	+	Silent	SNP	G	G	A	rs11539543	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	41	74	0	0.42268	0	G|0.870;C|0.000;A|0.130	0.130	strong	.	CHD4	539	.	NM_001273	exon11	c.C1548T	p.P516P	TGGTGTGGGAGAT	.	PASS	Atlas-SNP
S100P	6286	hgsc.bcm.edu	37	4	6698664	6698664	+	Silent	SNP	G	G	A	rs11737783	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	80	213	0	0.465116	0	G|0.972;A|0.028	0.028	strong	.	S100P	7	.	NM_005980	exon2	c.G183A	p.L61L	GGACCTGGATGCC	.	PASS	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	37	12	248155	248155	+	Silent	SNP	C	C	T	rs55923022	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	6	4	2	0	0.666667	0	C|0.880;T|0.120	0.120	strong	IQSEC3_ENST00000538872,NS,carcinoma,0,2	IQSEC3	154	2	NM_001170738	exon4	c.C1626T	p.A542A	CCCCGCCGTGGGC	.	PASS	Atlas-SNP
RIOK1	83732	hgsc.bcm.edu	37	6	7393452	7393452	+	Silent	SNP	C	C	T	rs2274212	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	104	97	0	1	0	C|0.560;T|0.440	0.440	strong	RIOK1,colon,carcinoma,+1,1	RIOK1	36	1	NM_031480	exon2	c.C192T	p.D64D	TTATGACGATGAT	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037424	33037424	+	Missense_Mutation	SNP	T	T	C	rs1126542	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	62	155	0	0.371257	0	T|0.680;G|0.000;C|0.319;A|0.000	0.319	strong	.	HLA-DPA1	20	.	NM_033554	exon2	c.A340G	p.T114A	CGTTGGTGGCCTG	.	PASS	Atlas-SNP
UPK3A	7380	hgsc.bcm.edu	37	22	45691594	45691594	+	Silent	SNP	A	A	G	rs1057356	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	28	44	0	0.56	0	A|0.474;G|0.526	0.526	strong	.	UPK3A	14	.	NM_006953	exon6	c.A858G	p.Q286Q	GCTCCAAGACTGA	.	PASS	Atlas-SNP
CCDC7	221016	hgsc.bcm.edu	37	10	32807434	32807434	+	Splice_Site	SNP	G	G	T	rs41276068	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	49	108	0	0.49	0	G|0.921;T|0.079	0.079	strong	.	CCDC7	47	.	NM_145023	exon12	c.993+1G>T	.	AAAGAGGTTGGAA	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114462322	114462322	+	Missense_Mutation	SNP	A	A	G	rs6477845	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	53	37	0	1	0	A|0.164;G|0.836	0.836	strong	.	C9orf84	207	.	NM_173521	exon22	c.T2903C	p.L968P	GTAAGCAGATACC	.	PASS	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	37	3	18427924	18427924	+	Silent	SNP	G	G	T	rs2229261	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	51	136	0	0.439655	0	T|0.613;G|0.387;A|0.000	0.613	strong	.	SATB1	96	.	NM_002971	exon8	c.C1386A	p.P462P	GATGAGGGGGGCA	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16967586	16967586	+	Missense_Mutation	SNP	C	C	G	rs62619939	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	44	86	0	0.536585	0	C|0.878;G|0.122	0.122	strong	.	CUBN	515	.	NM_001081	exon42	c.G6459C	p.L2153F	TACCACCAAGTAA	.	PASS	Atlas-SNP
TGOLN2	10618	hgsc.bcm.edu	37	2	85553784	85553784	+	Silent	SNP	C	C	T	rs1044973	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	96	205	0	0.470588	0	C|0.360;T|0.640	0.640	strong	.	TGOLN2	32	.	NM_001206841	exon2	c.G1071A	p.G357G	AAGTGTCCCTTCA	.	PASS	Atlas-SNP
RSL1D1	26156	hgsc.bcm.edu	37	16	11940390	11940390	+	Silent	SNP	T	T	C	rs8052900	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	39	74	0	0.481481	0	T|0.271;C|0.729	0.729	strong	RSL1D1,NS,carcinoma,0,1	RSL1D1	40	1	NM_015659	exon5	c.A603G	p.T201T	TAAGACTGTTCCA	.	PASS	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	37	1	185240474	185240474	+	Missense_Mutation	SNP	A	A	G	rs12041704	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	103	210	0	0.504902	0	A|0.637;G|0.363	0.363	strong	SWT1,NS,carcinoma,0,1	SWT1	88	1	NM_017673	exon17	c.A2461G	p.N821D	AACAGTAATTATC	.	PASS	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	37	19	36334419	36334419	+	Silent	SNP	G	G	A	rs437168	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	70	126	0	0.514706	0	G|0.821;A|0.179	0.179	strong	.	NPHS1	165	.	NM_004646	exon17	c.C2289T	p.V763V	GGCATCGACAGTG	.	PASS	Atlas-SNP
CDH11	1009	hgsc.bcm.edu	37	16	65038674	65038674	+	Silent	SNP	G	G	A	rs35182	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	110	87	0	1	0	G|0.923;A|0.077	0.077	strong	.	CDH11	260	.	NM_001797	exon3	c.C99T	p.P33P	GAAGGAGGGCCGC	.	PASS	Atlas-SNP
RNF112	7732	hgsc.bcm.edu	37	17	19319353	19319353	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	26	60	0	0.553191	0	.	.	none	.	RNF112	37	.	NM_007148	exon14	c.C1761T	p.A587A	AGCTGCCGTGGGG	.	PASS	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11757355	11757355	+	Silent	SNP	G	G	A	rs117483481	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	31	58	1	0.553571	0.0172414	G|0.995;A|0.005	0.005	strong	DNAH9,NS,carcinoma,+1,1	DNAH9	695	1	NM_001372	exon50	c.G9543A	p.P3181P	CTCTCCGCCTCTG	.	scavenged	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	37	17	33772550	33772550	+	Silent	SNP	C	C	T	rs76192030	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	90	161	0	0.494505	0	C|0.930;T|0.070	0.070	strong	SLFN13,rectum,carcinoma,-2,1	SLFN13	79	1	NM_144682	exon3	c.G150A	p.A50A	AGCACACGCGGCC	.	PASS	Atlas-SNP
RAET1G	353091	hgsc.bcm.edu	37	6	150239484	150239484	+	Missense_Mutation	SNP	C	C	T	rs4870111	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	559	276	533	1	0.493739	0.00187617	C|0.968;T|0.032	0.032	strong	.	RAET1G	31	.	NM_001001788	exon4	c.G668A	p.R223K	GTGGCCCTGGGTT	.	PASS	Atlas-SNP
TIGD2	166815	hgsc.bcm.edu	37	4	90034686	90034686	+	Silent	SNP	A	A	G	rs17015027	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	32	61	0	0.484848	0	A|0.795;G|0.205	0.205	strong	.	TIGD2	36	.	NM_145715	exon1	c.A561G	p.P187P	TCTACCATCAAGG	.	PASS	Atlas-SNP
SLURP1	57152	hgsc.bcm.edu	37	8	143823241	143823241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	26	56	0	0.490566	0	.	.	none	SLURP1,NS,carcinoma,0,1	SLURP1	16	1	NM_020427	exon2	c.C158T	p.T53M	ACCAGCGTGGTCA	.	PASS	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	37	1	94476388	94476388	+	Silent	SNP	C	C	G	rs1801574	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	40	95	0	0.434783	0	C|0.758;G|0.242	0.242	strong	ABCA4,NS,carcinoma,0,1	ABCA4	275	1	NM_000350	exon40	c.G5682C	p.L1894L	GACCAGCAGGGTC	.	PASS	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	37	9	130489558	130489558	+	Silent	SNP	A	A	G	rs472144	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	65	119	0	0.433333	0	A|0.377;G|0.623	0.623	strong	TTC16,NS,carcinoma,0,1	TTC16	55	1	NM_144965	exon12	c.A1578G	p.K526K	GCTTAAACGGCAC	.	PASS	Atlas-SNP
CTAGE1	64693	hgsc.bcm.edu	37	18	19995731	19995731	+	Missense_Mutation	SNP	T	T	C	rs9946136	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	92	112	0	0.593548	0	T|0.813;C|0.187	0.187	strong	.	CTAGE1	146	.	NM_172241	exon1	c.A2044G	p.I682V	TTCTTATGAACGG	.	PASS	Atlas-SNP
VPS52	6293	hgsc.bcm.edu	37	6	33239423	33239423	+	Silent	SNP	C	C	G	rs17221618	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	59	108	0	0.457364	0	C|0.956;G|0.044	0.044	strong	.	VPS52	56	.	NM_022553	exon1	c.G30C	p.A10A	CCGGGCCGCAGCC	.	PASS	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	37	6	117113653	117113653	+	Silent	SNP	T	T	C	rs615199	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	72	128	0	0.566929	0	C|0.301;N|0.000	0.301	strong	GPRC6A,NS,carcinoma,0,1	GPRC6A	152	1	NM_148963	exon6	c.A2433G	p.P811P	CACAGCTGGTACA	.	PASS	Atlas-SNP
GABRP	2568	hgsc.bcm.edu	37	5	170215638	170215638	+	Silent	SNP	T	T	C	rs10036156	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	78	180	0	0.472727	0	T|0.788;C|0.212	0.212	strong	.	GABRP	65	.	NM_014211	exon2	c.T19C	p.L7L	CTCCACTTGGCCT	.	PASS	Atlas-SNP
GCNT4	51301	hgsc.bcm.edu	37	5	74325101	74325101	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	52	103	0	0.490566	0	.	.	none	GCNT4,NS,carcinoma,-2,1	GCNT4	46	1	NM_016591	exon1	c.G762A	p.T254T	TTTCACCGTCTCC	.	PASS	Atlas-SNP
HP	3240	hgsc.bcm.edu	37	16	72094348	72094348	+	Silent	SNP	G	G	A	rs5475	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	255	120	221	0	0.470588	0	G|0.978;A|0.022	0.022	strong	.	HP	27	.	NM_005143	exon7	c.G780A	p.E260E	TAATGAGAGAGTG	.	PASS	Atlas-SNP
AMZ1	155185	hgsc.bcm.edu	37	7	2748803	2748803	+	Silent	SNP	C	C	T	rs58726146	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	52	78	0	0.565217	0	C|0.791;T|0.209	0.209	strong	AMZ1,NS,carcinoma,0,1	AMZ1	41	1	NM_133463	exon5	c.C696T	p.D232D	AGCAGACGGCCCC	.	PASS	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	37	11	5663706	5663706	+	Missense_Mutation	SNP	G	G	C	rs3740997	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	29	75	1	0.432836	0.0133333	G|0.965;C|0.035	0.035	strong	TRIM6-TRIM34,NS,carcinoma,0,2	TRIM6-TRIM34	68	2	NM_001003819	exon12	c.G1906C	p.D636H	GCTCCAGATCTGA	.	scavenged	Atlas-SNP
KLHL28	54813	hgsc.bcm.edu	37	14	45403616	45403616	+	Missense_Mutation	SNP	T	T	C	rs35728857	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	65	155	0	0.464286	0	T|0.997;C|0.003	0.003	strong	.	KLHL28	53	.	NM_017658	exon3	c.A1045G	p.I349V	TTCTGATAGTGAC	.	PASS	Atlas-SNP
HIST1H4B	8366	hgsc.bcm.edu	37	6	26027433	26027433	+	Silent	SNP	G	G	A	rs3752419	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	51	80	0	0.443478	0	G|0.628;A|0.372	0.372	strong	.	HIST1H4B	27	.	NM_003544	exon1	c.C48T	p.A16A	ACGCTTGGCACCT	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123846288	123846288	+	Missense_Mutation	SNP	G	G	A	rs4752642	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	51	102	0	0.398438	0	G|0.754;A|0.246	0.246	strong	.	TACC2	271	.	NM_206862	exon4	c.G4273A	p.A1425T	GCCCTGGCCACAC	.	PASS	Atlas-SNP
WDR27	253769	hgsc.bcm.edu	37	6	170058374	170058374	+	Missense_Mutation	SNP	C	C	T	rs3800544	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	69	143	0	0.482517	0	C|0.910;T|0.090	0.090	strong	.	WDR27	129	.	NM_182552	exon13	c.G1400A	p.R467H	TGACCACGTCGCT	.	PASS	Atlas-SNP
SPP1	6696	hgsc.bcm.edu	37	4	88903889	88903889	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	4	185	0	0.021978	0	.	.	none	SPP1,NS,carcinoma,+2,1	SPP1	35	1	NM_001251830	exon8	c.T825C	p.D275D	GATTGATAGTCAG	.	scavenged	Atlas-SNP
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46011298	46011298	+	Silent	SNP	G	G	A	rs74695406		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	251	5	173	0	0.0199203	0	A|1.000;|0.000	1.000	weak	KRTAP10-6,NS,carcinoma,0,1	KRTAP10-6	57	1	NM_198688	exon1	c.C1068T	p.S356S	GCAGAGGCTGTAG	.	scavenged	Atlas-SNP
DHX38	9785	hgsc.bcm.edu	37	16	72135014	72135014	+	Silent	SNP	T	T	C	rs1050363	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	328	140	338	0	0.426829	0	T|0.421;C|0.579	0.579	strong	DHX38,NS,carcinoma,0,1	DHX38	91	1	NM_014003	exon10	c.T1308C	p.A436A	GGATGCTACTTCT	.	PASS	Atlas-SNP
E2F3	1871	hgsc.bcm.edu	37	6	20490428	20490428	+	Missense_Mutation	SNP	G	G	A	rs4134982	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	57	176	0	0.416058	0	G|0.993;A|0.007	0.007	strong	E2F3,NS,carcinoma,-2,1	E2F3	30	1	NM_001949	exon7	c.G1165A	p.D389N	CATAGCGATTGCT	.	PASS	Atlas-SNP
ACAT1	38	hgsc.bcm.edu	37	11	108009660	108009660	+	Silent	SNP	C	C	A	rs35188041	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	76	134	1	0.550725	0.00746269	A|0.168;C|0.832;G|0.000	0.168	strong	ACAT1,colon,carcinoma,0,1	ACAT1	35	1	NM_000019	exon6	c.C471A	p.S157S	CATGTCCAATGTT	.	scavenged	Atlas-SNP
KDM5C	8242	hgsc.bcm.edu	37	X	53223819	53223819	+	Silent	SNP	C	C	T	rs76525703	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	279	278	245	1	0.996416	0.00408163	C|0.996;T|0.004	0.004	strong	.	KDM5C	385	.	NM_004187	exon23	c.G3540A	p.T1180T	GGAGGCCGTGCTC	.	PASS	Atlas-SNP
MTRNR2L7	100288485	hgsc.bcm.edu	37	10	37890955	37890955	+	Silent	SNP	G	G	A	rs2180706	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	7	7	8	0	1	0	G|0.434;A|0.566	0.566	strong	.	.	.	.	NM_001190489	exon1	c.C18T	p.F6F	GCAGCCGAACCCT	.	PASS	Atlas-SNP
MICAL1	64780	hgsc.bcm.edu	37	6	109767930	109767930	+	Missense_Mutation	SNP	G	G	T	rs9320288	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	96	227	0	0.434389	0	G|0.502;T|0.498	0.498	strong	.	MICAL1	79	.	NM_022765	exon18	c.C2273A	p.A758E	CCTTCCGCTTTGT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412335	105412335	+	Silent	SNP	C	C	T	rs202104959	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	4	291	0	0.190476	0	C|0.963;T|0.037	0.037	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,2	AHNAK2	719	2	NM_138420	exon7	c.G9453A	p.P3151P	GAACGACGGCATC	.	scavenged	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	37	2	97465379	97465379	+	Missense_Mutation	SNP	C	C	T	rs144495984	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	84	161	0	0.482759	0	C|1.000;T|0.000	0.000	weak	.	CNNM4	48	.	NM_020184	exon5	c.C1942T	p.P648S	TCGGTCCCCTCCG	.	PASS	Atlas-SNP
PSMD5	5711	hgsc.bcm.edu	37	9	123605139	123605139	+	Missense_Mutation	SNP	C	C	A	rs113345820	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	38	47	0	0.575758	0	C|0.997;A|0.003	0.003	strong	.	PSMD5	34	.	NM_005047	exon1	c.G49T	p.A17S	GCGGCGCTTCCAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179447848	179447848	+	Silent	SNP	T	T	C	rs4894029	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	70	174	0	0.421687	0	T|0.555;C|0.445	0.445	strong	.	TTN	18412	.	NM_001267550	exon313	c.A65682G	p.T21894T	AGAAACTGTTGGC	.	PASS	Atlas-SNP
BAIAP2	10458	hgsc.bcm.edu	37	17	79089590	79089590	+	Missense_Mutation	SNP	A	A	G	rs4969391	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	51	78	0	0.495146	0	A|0.843;G|0.157	0.157	strong	BAIAP2_ENST00000321300,colon,carcinoma,0,1	BAIAP2	74	1	NM_001144888	exon14	c.A1556G	p.Q519R	ACGTCCAGCTGAA	.	PASS	Atlas-SNP
APBA2	321	hgsc.bcm.edu	37	15	29346468	29346468	+	Silent	SNP	C	C	T	rs137995892	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	28	66	0	0.329412	0	C|0.994;T|0.006	0.006	strong	.	APBA2	132	.	NM_005503	exon3	c.C381T	p.H127H	TGCACACCCTGTG	.	PASS	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31320229	31320229	+	Missense_Mutation	SNP	A	A	G	rs2282632	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	60	126	0	0.521739	0	G|0.767;N|0.000	0.767	strong	.	ASXL3	405	.	NM_030632	exon11	c.A2861G	p.N954S	TAAGAAATGAAAG	.	PASS	Atlas-SNP
IL21	59067	hgsc.bcm.edu	37	4	123536963	123536963	+	Silent	SNP	G	G	A	rs4833837	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	154	163	0	0.993548	0	G|0.208;A|0.792	0.792	strong	.	IL21	16	.	NM_001207006	exon3	c.C234T	p.C78C	CTGAAAGCAGGAA	.	PASS	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	37	17	45447832	45447832	+	Missense_Mutation	SNP	A	A	G	rs55853213	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	69	95	1	0.556452	0.0105263	A|0.942;G|0.058	0.058	strong	C17orf57,NS,carcinoma,-2,1	.	.	1	NM_152347	exon11	c.A835G	p.I279V	GATATTATATTTA	.	scavenged	Atlas-SNP
ATF7IP2	80063	hgsc.bcm.edu	37	16	10574796	10574796	+	Missense_Mutation	SNP	C	C	T	rs9932051	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	23	75	0	0.418182	0	C|0.913;N|0.001	.	strong	.	ATF7IP2	40	.	NM_024997	exon11	c.C1610T	p.T537I	AAACAACCCCATT	.	PASS	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888049	52888049	+	Missense_Mutation	SNP	C	C	A	rs75346003	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	9	20	4	0.236842	0.2	C|0.872;A|0.128	0.128	strong	ZNF880,colon,carcinoma,-1,2	ZNF880	45	2	NM_001145434	exon4	c.C1216A	p.Q406K	GGAGAGCAACCTT	.	scavenged	Atlas-SNP
CNTNAP3B	728577	hgsc.bcm.edu	37	9	43891639	43891639	+	Silent	SNP	G	G	A	rs200586830	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	830	283	567	0	0.340964	0	.	.	weak	CNTNAP3B,NS,carcinoma,0,1	CNTNAP3B	37	1	NM_001201380	exon17	c.G2682A	p.Q894Q	TGATCAGCTTCCT	.	scavenged	Atlas-SNP
DMBX1	127343	hgsc.bcm.edu	37	1	46976717	46976717	+	Silent	SNP	C	C	T	rs12045245	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	62	130	0	0.418919	0	C|0.749;T|0.251	0.251	strong	.	DMBX1	50	.	NM_147192	exon3	c.C459T	p.A153A	CAAGGCCGAGGCC	.	PASS	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	37	16	77323235	77323235	+	Missense_Mutation	SNP	C	C	G	rs3743749	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	22	67	0	0.415094	0	C|0.827;G|0.173	0.173	strong	.	ADAMTS18	270	.	NM_199355	exon22	c.G3476C	p.S1159T	AGACAACTTGAGG	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207175070	207175070	+	Missense_Mutation	SNP	G	G	A	rs138061259	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	67	148	0	0.416149	0	G|0.981;A|0.019	0.019	strong	.	ZDBF2	531	.	NM_020923	exon5	c.G5818A	p.A1940T	CAGACAGCGAAAA	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	37	19	10106936	10106936	+	Silent	SNP	G	G	C	rs1559186	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	24	61	0	0.545455	0	G|0.601;C|0.399	0.399	strong	.	COL5A3	243	.	NM_015719	exon14	c.C1425G	p.L475L	CATAGAGAGCTGG	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117708971	117708971	+	Silent	SNP	C	C	T	rs9489143	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	77	139	0	0.490446	0	C|0.933;T|0.067	0.067	strong	.	ROS1	728	.	NM_002944	exon13	c.G1986A	p.E662E	TGAGGGCTCTGAC	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	37	5	176002542	176002542	+	Silent	SNP	C	C	T	rs41275281	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	39	81	0	0.386139	0	C|0.917;T|0.083	0.083	strong	CDHR2,NS,carcinoma,0,1	CDHR2	152	1	NM_017675	exon10	c.C804T	p.G268G	GGATGGCGACAAA	.	PASS	Atlas-SNP
VWC2	375567	hgsc.bcm.edu	37	7	49842377	49842377	+	Missense_Mutation	SNP	A	A	C	rs79731913	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	58	90	0	0.513274	0	A|0.958;C|0.042	0.042	strong	.	VWC2	30	.	NM_198570	exon3	c.A767C	p.Q256P	GTCCCCAGACGGA	.	PASS	Atlas-SNP
SH3PXD2A	9644	hgsc.bcm.edu	37	10	105362104	105362104	+	Silent	SNP	G	G	A	rs11191741	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	56	84	0	0.54902	0	G|0.718;A|0.282	0.282	strong	SH3PXD2A,NS,neuroblastoma,0,1	SH3PXD2A	90	1	NM_014631	exon14	c.C2787T	p.F929F	CTTGCCGAAGCCC	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29911119	29911119	+	Missense_Mutation	SNP	G	G	C	rs3173419	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	62	233	0	0.335135	0	C|0.006;G|0.577;T|0.416	0.006	strong	.	HLA-A	89	.	NM_001242758	exon3	c.G418C	p.D140H	CGGCAGGACGCCT	.	PASS	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	37	X	135313034	135313034	+	Missense_Mutation	SNP	T	T	G	rs1055497	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	97	86	0	1	0	0|0.026;G|0.527	0.527	strong	.	MAP7D3	102	.	NM_024597	exon9	c.A1505C	p.E502A	GCATTTTCAGGAG	.	PASS	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	37	4	155243573	155243573	+	Silent	SNP	C	C	T	rs13109747	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	89	176	0	0.511494	0	C|0.217;T|0.783	0.783	strong	DCHS2,NS,carcinoma,-1,2	DCHS2	594	2	NM_017639	exon13	c.G2721A	p.S907S	ATCATACGAAAGT	.	PASS	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	37	5	101815888	101815888	+	Silent	SNP	T	T	C	rs150189521	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	31	73	0	0.449275	0	T|0.994;C|0.006	0.006	strong	.	SLCO6A1	153	.	NM_173488	exon2	c.A609G	p.G203G	TTCAATTCCTACC	.	PASS	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	37	19	4510560	4510560	+	Missense_Mutation	SNP	C	C	T	rs7251858	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	128	111	0	0.977099	0	C|0.660;T|0.340	0.340	strong	PLIN4_ENST00000301286,NS,carcinoma,0,2	PLIN4	191	2	NM_001080400	exon3	c.G3370A	p.A1124T	TGGTGGCCAAAAG	.	PASS	Atlas-SNP
ZNF354B	117608	hgsc.bcm.edu	37	5	178294060	178294060	+	Missense_Mutation	SNP	G	G	A	rs11955074	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	125	197	0	0.520833	0	G|0.854;A|0.146	0.146	strong	.	ZNF354B	67	.	NM_058230	exon4	c.G244A	p.V82I	TCTGGTGTCTCCT	.	PASS	Atlas-SNP
CLEC4C	170482	hgsc.bcm.edu	37	12	7894056	7894056	+	Missense_Mutation	SNP	G	G	A	rs73056605	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	61	121	0	0.412162	0	G|0.766;A|0.234	0.234	strong	CLEC4C,NS,carcinoma,+2,2	CLEC4C	44	2	NM_130441	exon4	c.C196T	p.P66S	GGCTTGGATGATA	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	37	10	129921195	129921195	+	Silent	SNP	A	A	T	rs1063536	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	97	178	0	0.473171	0	A|0.894;T|0.106	0.106	strong	MKI67,NS,carcinoma,0,1	MKI67	363	1	NM_001145966	exon4	c.T237A	p.P79P	CCGTACAGGCTCA	.	PASS	Atlas-SNP
EML1	2009	hgsc.bcm.edu	37	14	100317272	100317272	+	Silent	SNP	C	C	T	rs34803725	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	63	146	0	0.42	0	C|0.985;T|0.015	0.015	strong	.	EML1	97	.	NM_001008707	exon2	c.C150T	p.D50D	AGAAGACGACATC	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34925689	34925689	+	Silent	SNP	G	G	A	rs61739710	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	76	208	0	0.410811	0	G|0.792;A|0.208	0.208	strong	.	SON	343	.	NM_032195	exon3	c.G4152A	p.L1384L	TGTCCTGGAGCCT	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80045086	80045086	+	Silent	SNP	G	G	C	rs4485435	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	43	91	0	0.518072	0	G|0.762;C|0.238	0.238	strong	.	FASN	154	.	NM_004104	exon21	c.C3267G	p.A1089A	GCCTCCGGCCACT	.	PASS	Atlas-SNP
DMP1	1758	hgsc.bcm.edu	37	4	88584148	88584148	+	Silent	SNP	C	C	T	rs2615498	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	66	112	0	0.594595	0	C|0.850;T|0.150	0.150	strong	.	DMP1	72	.	NM_004407	exon6	c.C1218T	p.S406S	AGACAGCGAATCC	.	PASS	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296152	39296152	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	7	191	1	0.0315315	0.0052356	.	.	none	KRTAP4-6,NS,carcinoma,0,1	KRTAP4-6	46	1	NM_030976	exon1	c.T588C	p.R196R	CAAGGGACGGGGG	.	scavenged	Atlas-SNP
F11	2160	hgsc.bcm.edu	37	4	187205301	187205301	+	Silent	SNP	T	T	C	rs5970	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	143	141	1	0.993056	0.0070922	T|0.839;C|0.161	0.161	strong	.	F11	65	.	NM_000128	exon11	c.T1191C	p.G397G	TCGTGGTGAGTGG	.	PASS	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	37	6	121629167	121629167	+	Silent	SNP	G	G	A	rs9398629	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	84	219	0	0.428571	0	G|0.704;A|0.296	0.296	strong	.	C6orf170	146	.	NM_152730	exon5	c.C645T	p.C215C	TTTTTCGCAGAGA	.	PASS	Atlas-SNP
CREB3L1	90993	hgsc.bcm.edu	37	11	46339011	46339011	+	Missense_Mutation	SNP	G	G	A	rs35652107	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	32	47	0	0.516129	0	G|0.914;A|0.086	0.086	strong	.	CREB3L1	30	.	NM_052854	exon10	c.G1231A	p.A411T	CTGGCCGCAGACG	.	PASS	Atlas-SNP
DIO1	1733	hgsc.bcm.edu	37	1	54359922	54359922	+	Silent	SNP	C	C	T	rs2294510	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	95	190	1	0.542857	0.00526316	C|0.898;T|0.102	0.102	strong	.	DIO1	66	.	NM_001039715	exon1	c.C39T	p.L13L	GAGGCTCTGGGTG	.	PASS	Atlas-SNP
DDHD2	23259	hgsc.bcm.edu	37	8	38095662	38095662	+	Missense_Mutation	SNP	C	C	T	rs2306899	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	119	237	0	0.506383	0	C|0.805;T|0.195	0.195	strong	DDHD2,NS,carcinoma,-1,1	DDHD2	60	1	NM_001164232	exon5	c.C557T	p.T186M	CACCCACGGAGCA	.	PASS	Atlas-SNP
SLC22A16	85413	hgsc.bcm.edu	37	6	110778128	110778128	+	Missense_Mutation	SNP	T	T	C	rs714368	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	44	86	0	0.52381	0	T|0.701;C|0.299	0.299	strong	.	SLC22A16	81	.	NM_033125	exon2	c.A146G	p.H49R	ACATGATGAGGGG	.	PASS	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	37	9	90322023	90322023	+	Missense_Mutation	SNP	G	G	A	rs1056719	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	28	71	0	0.538462	0	G|0.362;A|0.638	0.638	strong	.	DAPK1	329	.	NM_004938	exon26	c.G4037A	p.S1346N	ACACCAGTAACGG	.	PASS	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	37	19	5273571	5273571	+	Silent	SNP	T	T	G	rs1141371	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	120	0	1	0	T|0.785;G|0.215;A|0.000	0.215	strong	.	PTPRS	169	.	NM_130854	exon4	c.A261C	p.A87A	TGCCCCTGCACTC	.	PASS	Atlas-SNP
KRT82	3888	hgsc.bcm.edu	37	12	52788814	52788814	+	Missense_Mutation	SNP	C	C	T	rs61730587	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	65	138	1	0.52	0.00724638	C|0.991;T|0.009	0.009	strong	KRT82,NS,carcinoma,-1,1	KRT82	45	1	NM_033033	exon9	c.G1487A	p.R496Q	GATTTCCGCCCGC	.	scavenged	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	37	14	102807671	102807671	+	Missense_Mutation	SNP	C	C	T	rs9464	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	98	204	0	0.471154	0	T|0.080;G|0.001	0.080	strong	.	ZNF839	41	.	NM_018335	exon8	c.C1939T	p.P647S	TCCCCTCCAGTAA	.	PASS	Atlas-SNP
RNF32	140545	hgsc.bcm.edu	37	7	156469190	156469190	+	Silent	SNP	A	A	G	rs2302145	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	63	99	0	0.543103	0	A|0.477;G|0.523	0.523	strong	.	RNF32	77	.	NM_001184996	exon9	c.A930G	p.A310A	GGGTGCAGGCAGG	.	PASS	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	37	17	20217375	20217375	+	Silent	SNP	G	G	A	rs75296798	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	54	81	0	0.545455	0	G|0.923;A|0.077	0.077	strong	.	SPECC1	100	.	NM_001033553	exon15	c.G3204A	p.T1068T	TGAGACGTAACCC	.	PASS	Atlas-SNP
VSIG4	11326	hgsc.bcm.edu	37	X	65242157	65242157	+	Missense_Mutation	SNP	G	G	A	rs41307375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	138	132	0	0.992806	0	G|0.994;A|0.006	0.006	strong	.	VSIG4	54	.	NM_007268	exon8	c.C1148T	p.T383I	GGAACTGTGTCCA	.	PASS	Atlas-SNP
DGAT1	8694	hgsc.bcm.edu	37	8	145541766	145541766	+	Missense_Mutation	SNP	G	G	T	rs55962377	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	57	118	0	0.478992	0	G|0.941;T|0.059	0.059	strong	.	DGAT1	26	.	NM_012079	exon8	c.C743A	p.T248N	CGGTAGGTCAGAT	.	PASS	Atlas-SNP
SLC38A8	146167	hgsc.bcm.edu	37	16	84050776	84050776	+	Missense_Mutation	SNP	T	T	C	rs142821762	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	51	56	0	0.662338	0	T|1.000;C|0.000	0.000	strong	.	SLC38A8	60	.	NM_001080442	exon7	c.A922G	p.T308A	AGACAGTTACGAT	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4934564	4934564	+	Silent	SNP	C	C	G	rs1049207	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	56	95	0	0.5	0	C|0.573;G|0.427	0.427	strong	.	PPL	168	.	NM_002705	exon22	c.G4092C	p.L1364L	GGCCCGCAGGCCT	.	PASS	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17113147	17113147	+	Silent	SNP	A	A	G	rs3745345	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	65	142	0	0.477941	0	A|0.822;G|0.178	0.178	strong	.	CPAMD8	192	.	NM_015692	exon9	c.T828C	p.F276F	AAGCTCAAACTTG	.	PASS	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	37	19	44933947	44933947	+	Missense_Mutation	SNP	G	G	A	rs12151338	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	36	75	0	0.514286	0	G|0.732;A|0.268	0.268	strong	ZNF229,NS,carcinoma,+1,1	ZNF229	123	1	NM_014518	exon6	c.C1009T	p.R337C	GGTTACGTATGTG	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	51	136	0	0.284916	0	.	.	weak	ZNF814,NS,carcinoma,0,15	ZNF814	93	15	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	PASS	Atlas-SNP
COG4	25839	hgsc.bcm.edu	37	16	70515355	70515355	+	Silent	SNP	C	C	T	rs11054	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	41	40	0	1	0	C|0.538;A|0.002	.	strong	.	COG4	64	.	NM_015386	exon18	c.G2142A	p.S714S	AATGAGCGACCTC	.	PASS	Atlas-SNP
CABP2	51475	hgsc.bcm.edu	37	11	67288594	67288594	+	Missense_Mutation	SNP	C	C	T	rs2276118	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	43	91	0	0.447917	0	C|0.573;T|0.427	0.427	strong	.	CABP2	25	.	NM_016366	exon4	c.G281A	p.R94Q	CCGTCCCGGTCTC	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47811272	47811272	+	Silent	SNP	C	C	T	rs3737438	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	59	99	0	0.513043	0	C|0.650;T|0.350	0.350	strong	PCNT,NS,carcinoma,0,1	PCNT	283	1	NM_006031	exon21	c.C4197T	p.D1399D	CACGGACGCCGAG	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4934549	4934549	+	Silent	SNP	G	G	A	rs1049208	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	41	70	0	0.460674	0	G|0.589;A|0.411	0.411	strong	.	PPL	168	.	NM_002705	exon22	c.C4107T	p.S1369S	AAAGGCGCTCGCC	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	37	10	29754535	29754535	+	Missense_Mutation	SNP	G	G	A	rs17694739	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	100	210	0	0.483092	0	G|0.917;A|0.083	0.083	strong	SVIL,colon,carcinoma,+1,1	SVIL	226	1	NM_021738	exon34	c.C6122T	p.A2041V	TGGGGCGCGCTGT	.	PASS	Atlas-SNP
CNGA2	1260	hgsc.bcm.edu	37	X	150912502	150912502	+	Silent	SNP	G	G	A	rs113295831	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	98	111	0	0.989899	0	G|0.996;A|0.004	0.004	strong	.	CNGA2	136	.	NM_005140	exon7	c.G1527A	p.Q509Q	GACTCAGTATGCT	.	PASS	Atlas-SNP
PPP3R1	5534	hgsc.bcm.edu	37	2	68415767	68415767	+	Silent	SNP	G	G	A	rs687	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	100	191	0	0.483092	0	G|0.502;A|0.498	0.498	strong	.	PPP3R1	14	.	NM_000945	exon3	c.C99T	p.D33D	AGAATTGTCCAAA	.	PASS	Atlas-SNP
TBC1D5	9779	hgsc.bcm.edu	37	3	17208267	17208267	+	Missense_Mutation	SNP	T	T	C	rs1138454	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	80	129	0	0.519481	0	T|0.701;C|0.299	0.299	strong	.	TBC1D5	69	.	NM_001134381	exon23	c.A2152G	p.I718V	GTTTAATGGCCCC	.	PASS	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	37	8	145657840	145657840	+	Missense_Mutation	SNP	G	G	A	rs146566654	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	55	113	0	0.482456	0	G|1.000;A|0.000	0.000	strong	.	TONSL	128	.	NM_013432	exon23	c.C3563T	p.A1188V	TGCTCAGCATCTG	.	PASS	Atlas-SNP
GBE1	2632	hgsc.bcm.edu	37	3	81698130	81698130	+	Missense_Mutation	SNP	T	T	C	rs2229519	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	15	38	0	0.535714	0	T|0.679;C|0.320;N|0.000	0.320	strong	.	GBE1	111	.	NM_000158	exon5	c.A568G	p.R190G	TTGGTCTGGAATG	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73148481	73148481	+	Missense_Mutation	SNP	G	G	A	rs2973566	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	77	163	0	0.466667	0	G|0.830;A|0.170	0.170	strong	.	.	.	.	NM_001080479	exon14	c.G1754A	p.R585K	AGCAAAGAGCTTA	.	PASS	Atlas-SNP
MYOC	4653	hgsc.bcm.edu	37	1	171605387	171605387	+	Missense_Mutation	SNP	T	T	C	rs56314834	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	73	152	0	0.459119	0	T|0.995;C|0.005	0.005	strong	.	MYOC	69	.	NM_000261	exon3	c.A1193G	p.K398R	GCACCTTTGGCCT	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44248783	44248783	+	Missense_Mutation	SNP	G	G	T	rs142096969	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	354	110	331	0	0.310734	0	G|0.998;T|0.002	0.002	strong	KIAA1267,NS,carcinoma,0,1	.	.	1	NM_001193466	exon2	c.C727A	p.Q243K	TTCCTTGAAGTGC	.	PASS	Atlas-SNP
C2orf49	79074	hgsc.bcm.edu	37	2	105954140	105954140	+	Silent	SNP	G	G	A	rs55772482	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	49	94	1	0.538462	0.0106383	G|0.927;A|0.073	0.073	strong	C2orf49,NS,carcinoma,+2,1	C2orf49	19	1	NM_024093	exon1	c.G96A	p.E32E	TCTGGAGCAGGTT	.	scavenged	Atlas-SNP
FAM200B	285550	hgsc.bcm.edu	37	4	15689632	15689632	+	Silent	SNP	G	G	A	rs11729955	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	172	211	1	0.988506	0.00473934	G|0.683;A|0.317	0.317	strong	FAM200B_ENST00000422728,NS,carcinoma,0,2	FAM200B	56	2	NM_001145191	exon2	c.G1032A	p.E344E	CATGGAGGTATTG	.	PASS	Atlas-SNP
PAG1	55824	hgsc.bcm.edu	37	8	81897200	81897200	+	Silent	SNP	C	C	T	rs7006101	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	328	163	352	1	0.496951	0.00284091	C|0.853;T|0.147	0.147	strong	.	PAG1	39	.	NM_018440	exon7	c.G687A	p.S229S	GTCCACCGAGGCA	.	PASS	Atlas-SNP
TRMT12	55039	hgsc.bcm.edu	37	8	125463544	125463544	+	Silent	SNP	T	T	C	rs11556913	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	48	103	0	0.527473	0	A|0.000;C|0.268;G|0.000;T|0.731	0.268	strong	.	TRMT12	28	.	NM_017956	exon1	c.T376C	p.L126L	GCCGAGTTGGAGG	.	PASS	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159672419	159672419	+	Silent	SNP	G	G	C	rs551392	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	41	84	0	0.482353	0	G|0.777;C|0.222	0.222	strong	.	FNDC1	250	.	NM_032532	exon17	c.G4920C	p.L1640L	CAGCCTGGATGAA	.	PASS	Atlas-SNP
RRP9	9136	hgsc.bcm.edu	37	3	51969389	51969389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	40	91	0	0.421053	0	.	.	none	.	RRP9	40	.	NM_004704	exon10	c.G940A	p.E314K	ACTCCTCGGGGAT	.	PASS	Atlas-SNP
MC5R	4161	hgsc.bcm.edu	37	18	13826508	13826508	+	Silent	SNP	C	C	T	rs2236701	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	96	182	1	0.57485	0.00549451	C|0.775;T|0.225	0.225	strong	.	MC5R	83	.	NM_005913	exon1	c.C744T	p.T248T	GTTTACCGTGTGC	.	PASS	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	37	7	12620804	12620804	+	Silent	SNP	C	C	T	rs17283717	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	41	76	0	0.418367	0	C|0.733;T|0.267	0.267	strong	.	SCIN	105	.	NM_001112706	exon3	c.C474T	p.D158D	CTGGGACAGTTTC	.	PASS	Atlas-SNP
KLKB1	3818	hgsc.bcm.edu	37	4	187173012	187173012	+	Missense_Mutation	SNP	T	T	G	rs4253301	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	41	80	0	0.546667	0	T|0.904;G|0.096	0.096	strong	KLKB1_ENST00000264690,bladder,carcinoma,-1,2	KLKB1	155	2	NM_000892	exon10	c.T1141G	p.S381A	GACAACTCTGGTG	.	PASS	Atlas-SNP
TGM1	7051	hgsc.bcm.edu	37	14	24729687	24729687	+	Silent	SNP	C	C	T	rs35755034	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	34	98	0	0.465753	0	C|0.952;T|0.048	0.048	strong	.	TGM1	73	.	NM_000359	exon4	c.G726A	p.E242E	GTAGATCTCATTG	.	PASS	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	37	7	77247821	77247821	+	Missense_Mutation	SNP	G	G	A	rs9640663	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	9	31	0	0.391304	0	G|0.277;A|0.722	0.722	strong	PTPN12,rectum,carcinoma,0,1	PTPN12	83	1	NM_002835	exon12	c.G964A	p.V322I	AACATGGTCAGCT	.	PASS	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	37	9	78936358	78936358	+	Missense_Mutation	SNP	G	G	A	rs1110222	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	39	70	0	0.493671	0	G|0.679;A|0.321	0.321	strong	.	PCSK5	329	.	NM_001190482	exon30	c.G3824A	p.G1275D	AAGACGGCATATG	.	PASS	Atlas-SNP
KLK2	3817	hgsc.bcm.edu	37	19	51379893	51379893	+	Silent	SNP	C	C	T	rs198972	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	58	121	0	0.591837	0	C|0.585;T|0.415	0.415	strong	.	KLK2	66	.	NM_001002231	exon3	c.C372T	p.L124L	GCTGCTCCGCCTG	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79320095	79320095	+	Missense_Mutation	SNP	T	T	G	rs3739524	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	26	71	0	0.361111	0	G|0.303;N|0.000	0.303	strong	.	PRUNE2	331	.	NM_015225	exon8	c.A7095C	p.L2365F	TCTCAGTAAATCT	.	PASS	Atlas-SNP
CCDC110	256309	hgsc.bcm.edu	37	4	186379735	186379735	+	Missense_Mutation	SNP	T	T	C	rs6827370	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	21	51	0	0.446809	0	T|0.816;C|0.184	0.184	strong	.	CCDC110	78	.	NM_152775	exon6	c.A2006G	p.Q669R	GTAGATTGGTAGG	.	PASS	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159672542	159672542	+	Silent	SNP	C	C	T	rs550443	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	33	81	0	0.515625	0	C|0.789;T|0.211	0.211	strong	.	FNDC1	250	.	NM_032532	exon17	c.C5043T	p.A1681A	CAAAGCCACCCCA	.	PASS	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982247	240982247	+	Silent	SNP	A	A	G	rs75044548	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	22	150	0	0.785714	0	A|0.813;G|0.187	0.187	strong	PRR21,NS,carcinoma,0,2	PRR21	53	2	NM_001080835	exon1	c.T153C	p.H51H	CCGTGGATGAAGG	.	PASS	Atlas-SNP
FAM89A	375061	hgsc.bcm.edu	37	1	231155682	231155682	+	Missense_Mutation	SNP	C	C	T	rs141463019	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	47	75	0	0.516484	0	C|0.999;T|0.001	0.001	strong	.	FAM89A	8	.	NM_198552	exon2	c.G482A	p.R161Q	GGGCCTCGGTCCC	.	PASS	Atlas-SNP
CCDC38	120935	hgsc.bcm.edu	37	12	96284650	96284650	+	Silent	SNP	A	A	G	rs6538681	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	52	0	1	0	A|0.248;G|0.752	0.752	strong	.	CCDC38	45	.	NM_182496	exon9	c.T831C	p.A277A	AAGGACAGCTGTC	.	PASS	Atlas-SNP
ATG4B	23192	hgsc.bcm.edu	37	2	242606080	242606080	+	Missense_Mutation	SNP	G	G	A	rs35613684	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	65	153	0	0.496183	0	G|0.998;A|0.002	0.002	strong	.	ATG4B	35	.	NM_178326	exon8	c.G559A	p.V187I	ACCAGCGTTCCCT	.	PASS	Atlas-SNP
GPRC5C	55890	hgsc.bcm.edu	37	17	72436949	72436949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	18	34	0	0.473684	0	.	.	none	.	GPRC5C	92	.	NM_022036	exon2	c.T1169C	p.M390T	TTTCCATGGATGA	.	PASS	Atlas-SNP
ZCCHC2	54877	hgsc.bcm.edu	37	18	60231851	60231851	+	Silent	SNP	A	A	G	rs12956093	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	73	144	0	0.51773	0	A|0.878;G|0.122	0.122	strong	.	ZCCHC2	64	.	NM_017742	exon10	c.A1734G	p.G578G	GAAAGGAAAGCCA	.	PASS	Atlas-SNP
SMCR8	140775	hgsc.bcm.edu	37	17	18220268	18220268	+	Missense_Mutation	SNP	A	A	G	rs79875842	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	57	112	0	0.445312	0	A|0.991;G|0.009	0.009	strong	.	SMCR8	62	.	NM_144775	exon1	c.A1165G	p.I389V	GAAAGCATACCCT	.	PASS	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	37	2	196822004	196822004	+	Missense_Mutation	SNP	A	A	G	rs62623378	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	431	235	402	0	0.545244	0	A|0.921;G|0.079	0.079	strong	.	DNAH7	512	.	NM_018897	exon19	c.T3059C	p.I1020T	CTCATTATATCTC	.	PASS	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	37	22	21066789	21066789	+	Silent	SNP	A	A	G	rs5996654	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	247	222	336	1	0.898785	0.00297619	A|0.618;G|0.382	0.382	strong	PI4KA_ENST00000255882,NS,carcinoma,0,1	PI4KA	313	1	NM_058004	exon50	c.T5787C	p.T1929T	GGCCAGAGTGGAC	.	PASS	Atlas-SNP
SBSPON	157869	hgsc.bcm.edu	37	8	74005131	74005131	+	Missense_Mutation	SNP	A	A	G	rs59331088	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	60	124	0	0.5	0	A|0.660;G|0.340	0.340	strong	.	.	.	.	NM_153225	exon1	c.T172C	p.F58L	CGGTGAAGCGACA	.	PASS	Atlas-SNP
UNC5CL	222643	hgsc.bcm.edu	37	6	40998141	40998141	+	Silent	SNP	G	G	A	rs736795	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	72	192	0	0.473684	0	G|0.767;A|0.233	0.233	strong	.	UNC5CL	52	.	NM_173561	exon8	c.C1320T	p.C440C	CATGCCGCAAAGC	.	PASS	Atlas-SNP
PADI1	29943	hgsc.bcm.edu	37	1	17550121	17550121	+	Silent	SNP	G	G	A	rs2293912	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	90	0	1	0	G|0.877;A|0.121	0.121	strong	.	PADI1	77	.	NM_013358	exon3	c.G279A	p.R93R	GGTGAGGGTCTCC	.	PASS	Atlas-SNP
C1orf27	54953	hgsc.bcm.edu	37	1	186363119	186363119	+	Missense_Mutation	SNP	C	C	G	rs12084264	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	266	130	275	0	0.488722	0	C|0.756;G|0.244	0.244	strong	C1orf27_ENST00000287859,NS,carcinoma,0,2	C1orf27	41	2	NM_017847	exon9	c.C752G	p.S251C	GTCATTCTTTTGA	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	37	2	228160027	228160027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	3	116	0	0.029703	0	.	.	none	COL4A3_ENST00000328380,NS,carcinoma,+1,2	COL4A3	293	2	NM_000091	exon41	c.C3560T	p.A1187V	CTGGTGCTCAAGG	.	scavenged	Atlas-SNP
NDUFS7	374291	hgsc.bcm.edu	37	19	1388538	1388538	+	Missense_Mutation	SNP	C	C	T	rs1142530	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	119	96	0	0.991667	0	C|0.511;T|0.489	0.489	strong	.	NDUFS7	4	.	NM_024407	exon3	c.C68T	p.P23L	TGGGCCCGGCTGT	.	PASS	Atlas-SNP
CUL7	9820	hgsc.bcm.edu	37	6	43020188	43020188	+	Silent	SNP	G	G	A	rs4711738	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	33	66	0	0.358696	0	G|0.755;A|0.245	0.245	strong	.	CUL7	133	.	NM_001168370	exon2	c.C495T	p.D165D	CTTCACGTCGGTT	.	PASS	Atlas-SNP
CHST1	8534	hgsc.bcm.edu	37	11	45672261	45672261	+	Silent	SNP	A	A	G	rs3802762	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	221	208	0	0.991031	0	G|0.689;N|0.000	0.689	strong	.	CHST1	81	.	NM_003654	exon4	c.T213C	p.S71S	GGAGCCACTGCGC	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	37	16	24802325	24802325	+	Missense_Mutation	SNP	C	C	T	rs3803716	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	22	40	0	0.52381	0	C|0.850;T|0.150	0.150	strong	.	TNRC6A	171	.	NM_014494	exon6	c.C2362T	p.P788S	CCCAAACCTGCTC	.	PASS	Atlas-SNP
ENPP6	133121	hgsc.bcm.edu	37	4	185012387	185012387	+	Silent	SNP	C	C	T	rs28495394	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	46	106	0	0.433962	0	C|0.898;T|0.102	0.102	strong	.	ENPP6	61	.	NM_153343	exon8	c.G1266A	p.P422P	GACAGGCGGGGCA	.	PASS	Atlas-SNP
CYP3A43	64816	hgsc.bcm.edu	37	7	99457605	99457605	+	Missense_Mutation	SNP	C	C	G	rs680055	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	108	114	0	1	0	C|0.863;G|0.137	0.137	strong	.	CYP3A43	52	.	NM_057096	exon10	c.C1018G	p.P340A	GTTTTACCCAATA	.	PASS	Atlas-SNP
ARHGAP9	64333	hgsc.bcm.edu	37	12	57867907	57867907	+	Silent	SNP	G	G	A	rs61754174	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	23	74	0	0.410714	0	G|0.994;A|0.006	0.006	strong	.	ARHGAP9	79	.	NM_001080157	exon15	c.C1836T	p.T612T	GGCTCCGGTGACC	.	PASS	Atlas-SNP
KIAA0753	9851	hgsc.bcm.edu	37	17	6513329	6513329	+	Missense_Mutation	SNP	G	G	A	rs2304977	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	290	266	0	0.996564	0	G|0.714;A|0.286	0.286	strong	.	KIAA0753	63	.	NM_014804	exon9	c.C1697T	p.P566L	GACGCTGGTGGGG	.	PASS	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	37	17	8416982	8416982	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	26	57	0	0.42623	0	.	.	none	.	MYH10	148	.	NM_001256012	exon23	c.G2619A	p.K873K	AAGCGGCTTCACC	.	PASS	Atlas-SNP
YAF2	10138	hgsc.bcm.edu	37	12	42554505	42554505	+	Silent	SNP	A	A	G	rs1059360	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	48	125	0	0.347826	0	A|0.654;G|0.346	0.346	strong	.	YAF2	16	.	NM_001190979	exon5	c.T501C	p.A167A	TGCAGAAGCAGCA	.	PASS	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	37	1	12401868	12401868	+	Silent	SNP	A	A	C	rs28551666	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	66	0	1	0	A|0.203;C|0.797	0.797	strong	.	VPS13D	316	.	NM_015378	exon41	c.A8658C	p.P2886P	GCAGCCATTTGTC	.	PASS	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	37	3	58109162	58109162	+	Missense_Mutation	SNP	G	G	A	rs1131356	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	46	88	0	0.494624	0	G|0.596;A|0.404	0.404	strong	.	FLNB	430	.	NM_001457	exon21	c.G3469A	p.D1157N	AGCGTCGACTGCT	.	PASS	Atlas-SNP
ACSF3	197322	hgsc.bcm.edu	37	16	89167138	89167138	+	Missense_Mutation	SNP	G	G	C	rs11547019	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	7	27	0	0.269231	0	G|0.956;C|0.044	0.044	strong	ACSF3,colon,carcinoma,-2,1	ACSF3	40	1	NM_174917	exon3	c.G49C	p.A17P	GCCTTGGCGTCCT	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55578991	55578991	+	Silent	SNP	C	C	T	rs66537410	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	46	93	0	0.505495	0	C|0.899;T|0.101	0.101	strong	OR5L1,NS,carcinoma,0,1	OR5L1	145	1	NM_001004738	exon1	c.C49T	p.L17L	CTTGGACTATCAG	.	PASS	Atlas-SNP
CD81	975	hgsc.bcm.edu	37	11	2417893	2417893	+	Silent	SNP	C	C	T	rs14077	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	35	76	0	0.492958	0	C|0.922;T|0.078	0.078	strong	.	CD81	11	.	NM_004356	exon7	c.C597T	p.S199S	CTTCTCCGGGAAG	.	PASS	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22775185	22775185	+	Silent	SNP	C	C	T	rs1140026	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	36	91	0	0.444444	0	C|0.786;T|0.214	0.214	strong	.	ZNF521	269	.	NM_015461	exon5	c.G3597A	p.K1199K	CTGACACTTGATG	.	PASS	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	37	10	105194086	105194086	+	Missense_Mutation	SNP	C	C	T	rs2986014	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	19	57	0	0.365385	0	C|0.578;T|0.422	0.422	strong	.	PDCD11	160	.	NM_014976	exon24	c.C3646T	p.L1216F	AAGACCCTCTTAT	.	PASS	Atlas-SNP
PPP1R12C	54776	hgsc.bcm.edu	37	19	55614923	55614923	+	Silent	SNP	T	T	C	rs2532060	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	77	144	0	0.450292	0	T|0.385;C|0.615	0.615	strong	.	PPP1R12C	46	.	NM_017607	exon4	c.A585G	p.E195E	GGCTGCTTCCACA	.	PASS	Atlas-SNP
KRBOX4	55634	hgsc.bcm.edu	37	X	46332301	46332301	+	Silent	SNP	A	A	C	rs144294150	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	154	159	0	0.993548	0	A|0.995;C|0.005	0.005	strong	.	.	.	.	NM_001129898	exon6	c.A370C	p.R124R	GAATCCAGAACAT	.	PASS	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	37	3	12861608	12861608	+	Missense_Mutation	SNP	G	G	A	rs3817121	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	55	76	0	0.591398	0	A|0.144;G|0.856	0.144	strong	CAND2_ENST00000456430,NS,carcinoma,-2,2	CAND2	138	2	NM_001162499	exon11	c.G2968A	p.V990I	AGCACCGTCATCA	.	PASS	Atlas-SNP
CELF5	60680	hgsc.bcm.edu	37	19	3281298	3281298	+	Silent	SNP	G	G	A	rs36030381	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	30	50	0	0.545455	0	G|0.917;A|0.083	0.083	strong	.	CELF5	32	.	NM_021938	exon6	c.G705A	p.P235P	GACGCCGTCCCTC	.	PASS	Atlas-SNP
UGT2B28	54490	hgsc.bcm.edu	37	4	70160338	70160338	+	Silent	SNP	G	G	C	rs72552703	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	42	83	0	0.352941	0	G|0.792;C|0.208	0.208	strong	.	UGT2B28	101	.	NM_053039	exon6	c.G1401C	p.V467V	ATTTGTGATGTGC	.	PASS	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	37	18	9887149	9887149	+	Missense_Mutation	SNP	G	G	C	rs11662946	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	53	95	1	0.456897	0.0105263	G|0.937;C|0.063	0.063	strong	TXNDC2_ENST00000306084,colon,carcinoma,-1,2	TXNDC2	168	2	NM_001098529	exon2	c.G673C	p.A225P	AATATTGCCAAGA	.	scavenged	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	37	11	5067984	5067984	+	Missense_Mutation	SNP	A	A	G	rs2500016	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	249	120	192	0	0.481928	0	A|0.493;G|0.507	0.507	strong	.	OR52J3	77	.	NM_001001916	exon1	c.A229G	p.T77A	CTTTCTACAACCT	.	PASS	Atlas-SNP
LY6G6C	80740	hgsc.bcm.edu	37	6	31687008	31687008	+	Silent	SNP	G	G	A	rs1065356	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	143	119	0	0.993056	0	G|0.690;A|0.310	0.310	strong	LY6G6C,NS,adenocarcinoma,-1,1	LY6G6C	9	1	NM_025261	exon3	c.C243T	p.R81R	CAGCTTGCGGTTG	.	PASS	Atlas-SNP
TYR	7299	hgsc.bcm.edu	37	11	88911696	88911696	+	Missense_Mutation	SNP	C	C	A	rs1042602	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	50	97	0	0.520833	0	C|0.751;A|0.249	0.249	strong	TYR,NS,carcinoma,0,1	TYR	130	1	NM_000372	exon1	c.C575A	p.S192Y	GGGGATCTGAAAT	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114464487	114464487	+	Missense_Mutation	SNP	T	T	C	rs1407390	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	97	123	0	0.979798	0	T|0.152;C|0.848	0.848	strong	.	C9orf84	207	.	NM_173521	exon21	c.A2795G	p.Y932C	TTCTCATAATTCA	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9074265	9074265	+	Missense_Mutation	SNP	G	G	A	rs10406209	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	319	152	290	0	0.476489	0	G|0.826;A|0.174	0.174	strong	.	MUC16	4315	.	NM_024690	exon3	c.C13181T	p.T4394I	GCTCCAGTAGGAC	.	PASS	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	37	1	223116472	223116472	+	Missense_Mutation	SNP	G	G	A	rs71583926	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	85	115	0	0.574324	0	AAT|0.500;GAG|0.500	.	alt	.	DISP1	145	.	NM_032890	exon4	c.G307A	p.E103K	CATCCCGAGGCTG	.	PASS	Atlas-SNP
DND1	373863	hgsc.bcm.edu	37	5	140050926	140050926	+	Silent	SNP	G	G	A	rs62384220	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	869	174	503	0	0.20023	0	G|0.970;A|0.030	0.030	strong	DND1,NS,carcinoma,0,1	DND1	15	1	NM_194249	exon4	c.C1014T	p.N338N	CAGGAGGTTGGCC	.	scavenged	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152185750	152185750	+	Silent	SNP	G	G	A	rs12729662	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	136	130	0	0.635514	0	G|0.723;A|0.277	0.277	strong	HRNR,colon,carcinoma,0,1	HRNR	403	1	NM_001009931	exon3	c.C8355T	p.Y2785Y	TTGGCCGTAGCTG	.	PASS	Atlas-SNP
ACVR1C	130399	hgsc.bcm.edu	37	2	158443889	158443889	+	Silent	SNP	G	G	A	rs4556933	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	84	176	0	0.474576	0	G|0.540;A|0.460	0.460	strong	.	ACVR1C	85	.	NM_145259	exon2	c.C114T	p.F38F	GCAGGTGAAGTTT	.	PASS	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	37	6	34008006	34008006	+	Silent	SNP	A	A	G	rs2229900	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	65	106	0	0.52	0	T|0.098;G|0.315	0.315	strong	GRM4_ENST00000374181,NS,carcinoma,-2,3	GRM4	317	3	NM_000841	exon8	c.T1455C	p.D485D	GGCAGAATCGTTG	.	PASS	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	37	18	52895531	52895531	+	Silent	SNP	T	T	C	rs8766	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	23	77	0	0.469388	0	T|0.626;C|0.374	0.374	strong	.	TCF4	178	.	NM_001243226	exon20	c.A2247G	p.S749S	AGGCTCTGAGGAC	.	PASS	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57971190	57971190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	12	227	1	0.0474308	0.00440529	.	.	none	OR1S2,trunk,malignant_melanoma,0,1	OR1S2	119	1	NM_001004459	exon1	c.C464T	p.T155I	AGCAAAGTGCCGA	.	scavenged	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	41725630	41725630	+	Missense_Mutation	SNP	G	G	C	rs2297270	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	13	41	0	0.393939	0	G|0.854;C|0.146	0.146	strong	.	DSCAM	347	.	NM_001271534	exon5	c.C696G	p.D232E	GCGATGGTCAAAC	.	PASS	Atlas-SNP
STK17A	9263	hgsc.bcm.edu	37	7	43664198	43664198	+	Silent	SNP	A	A	G	rs10233697	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	19	41	0	0.38	0	A|0.868;G|0.132	0.132	strong	.	STK17A	31	.	NM_004760	exon7	c.A1002G	p.E334E	GATGGAAAAGGCA	.	PASS	Atlas-SNP
FRMD7	90167	hgsc.bcm.edu	37	X	131212944	131212944	+	Silent	SNP	A	A	G	rs7051368	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	42	41	0	1	0	A|0.911;G|0.089	0.089	strong	.	FRMD7	69	.	NM_194277	exon12	c.T1101C	p.N367N	CACTCCATTCACA	.	PASS	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	37	12	52992743	52992743	+	Missense_Mutation	SNP	C	C	T	rs142970524	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	110	193	0	0.511628	0	C|0.999;T|0.001	0.001	strong	.	KRT72	70	.	NM_001146225	exon2	c.G580A	p.G194R	TCACCCCGTCCCC	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7818151	7818151	+	Silent	SNP	G	G	A	rs73406606	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	88	51	0	0.988764	0	G|0.739;A|0.261	0.261	strong	OR5P2,brain,glioma,0,1	OR5P2	68	1	NM_153444	exon1	c.C339T	p.A113A	GGCCATGGCAGCC	.	PASS	Atlas-SNP
GCOM1	145781	hgsc.bcm.edu	37	15	57925836	57925836	+	Missense_Mutation	SNP	C	C	T	rs16977629	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	51	146	1	0.408	0.00684932	C|0.862;N|0.000	.	strong	GCOM1,NS,carcinoma,0,1	GCOM1	66	1	NM_001018090	exon8	c.C830T	p.A277V	TGAAAGCGATTGA	.	scavenged	Atlas-SNP
PIGQ	9091	hgsc.bcm.edu	37	16	630902	630902	+	Silent	SNP	C	C	G	rs1045274	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	16	65	0	0.410256	0	C|0.846;G|0.154	0.154	strong	PIGQ,NS,carcinoma,0,1	PIGQ	43	1	NM_148920	exon9	c.C1461G	p.L487L	TCTGCTCGTGGAC	.	PASS	Atlas-SNP
HLA-DPB1	3115	hgsc.bcm.edu	37	6	33048640	33048640	+	Missense_Mutation	SNP	A	A	G	rs1042140	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	17	57	0	0.5	0	A|0.758;C|0.000;G|0.242;T|0.000	0.242	strong	.	HLA-DPB1	28	.	NM_002121	exon2	c.A292G	p.K98E	GAGGAGAAGCGGG	.	PASS	Atlas-SNP
ALDH16A1	126133	hgsc.bcm.edu	37	19	49965173	49965173	+	Silent	SNP	A	A	T	rs7259560	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	14	39	0	0.518519	0	A|0.718;T|0.282	0.282	strong	.	ALDH16A1	54	.	NM_153329	exon7	c.A792T	p.G264G	GGCGGGAGAGTGT	.	PASS	Atlas-SNP
SLC25A17	10478	hgsc.bcm.edu	37	22	41195082	41195082	+	Silent	SNP	G	G	A	rs117487309	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	110	188	0	0.506912	0	G|0.971;A|0.029	0.029	strong	.	SLC25A17	25	.	NM_006358	exon2	c.C60T	p.S20S	TGTCACGCTTCCC	.	PASS	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	37	19	56565127	56565127	+	Silent	SNP	G	G	A	rs392801	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	94	147	0	0.513661	0	G|0.876;A|0.124	0.124	strong	.	NLRP5	217	.	NM_153447	exon13	c.G3252A	p.A1084A	TGCTGCGCTGTGC	.	PASS	Atlas-SNP
PSMG4	389362	hgsc.bcm.edu	37	6	3264526	3264526	+	Missense_Mutation	SNP	C	C	T	rs4959788	bycluster;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	96	109	0	0.989691	0	C|0.522;T|0.478	0.478	strong	PSMG4_ENST00000419065,colon,carcinoma,-1,4	PSMG4	23	4	NM_001128592	exon3	c.C334T	p.L112F	TCCACTCTTCCCA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281007	152281007	+	Missense_Mutation	SNP	A	A	G	rs7512553	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	544	178	346	0	0.327206	0	A|0.030;G|0.970	0.970	strong	FLG,brain,glioma,+2,1	FLG	900	1	NM_002016	exon3	c.T6355C	p.Y2119H	GATCATAATGGGA	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1268579	1268579	+	Missense_Mutation	SNP	T	T	G	rs190148881	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	402	25	422	1	0.0621891	0.00236967	T|0.984;G|0.016	0.016	strong	MUC5B,NS,carcinoma,0,5	MUC5B	473	5	NM_002458	exon31	c.T10469G	p.V3490G	CCACGGTGACTTC	.	scavenged	Atlas-SNP
NF2	4771	hgsc.bcm.edu	37	22	30051596	30051596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	5	158	0	0.026738	0	.	.	none	NF2_ENST00000403999,colon,carcinoma,-1,8	NF2	1312	8	NM_000268	exon6	c.A530G	p.Y177C	ATCTGTATCAGAT	.	scavenged	Atlas-SNP
DDX20	11218	hgsc.bcm.edu	37	1	112308953	112308953	+	Missense_Mutation	SNP	T	T	C	rs197412	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	38	105	0	0.4	0	C|0.483;N|0.000	0.483	strong	DDX20,NS,carcinoma,+1,1	DDX20	50	1	NM_007204	exon11	c.T1907C	p.I636T	AAGTTATTGAACA	.	PASS	Atlas-SNP
CPNE1	8904	hgsc.bcm.edu	37	20	34214173	34214173	+	Missense_Mutation	SNP	G	G	A	rs11543239	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	32	55	0	0.470588	0	G|0.925;A|0.075	0.075	strong	.	CPNE1	44	.	NM_003915	exon16	c.C1619T	p.P540L	GCCTGGGGGGCCT	.	PASS	Atlas-SNP
CDC14A	8556	hgsc.bcm.edu	37	1	100949860	100949860	+	Silent	SNP	G	G	A	rs2270694	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	26	38	0	0.509804	0	G|0.905;A|0.095	0.095	strong	.	CDC14A	65	.	NM_033313	exon11	c.G990A	p.S330S	AGCATCGTTGTGG	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87489318	87489318	+	Silent	SNP	G	G	C	rs3812644	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	35	114	0	0.364583	0	G|0.944;C|0.056	0.056	strong	GRID1,NS,carcinoma,0,1	GRID1	204	1	NM_017551	exon9	c.C1287G	p.P429P	GCCCATGGGCCTC	.	PASS	Atlas-SNP
RELN	5649	hgsc.bcm.edu	37	7	103205779	103205779	+	Missense_Mutation	SNP	G	G	A	rs115913736	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	45	127	0	0.409091	0	G|0.994;A|0.006	0.006	strong	RELN,NS,lymphoid_neoplasm,+1,1	RELN	593	1	NM_173054	exon34	c.C5156T	p.S1719L	CTTTCCGAGGTGT	.	PASS	Atlas-SNP
MLXIP	22877	hgsc.bcm.edu	37	12	122617989	122617989	+	Missense_Mutation	SNP	A	A	G	rs7978353	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	79	0	1	0	A|0.566;G|0.434	0.434	strong	MLXIP,colon,carcinoma,0,2	MLXIP	46	2	NM_014938	exon9	c.A1187G	p.E396G	TGGATGAGCAGGG	.	PASS	Atlas-SNP
SLC7A9	11136	hgsc.bcm.edu	37	19	33355081	33355081	+	Silent	SNP	G	G	A	rs35170371	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	62	99	0	0.48062	0	G|0.782;A|0.218	0.218	strong	.	SLC7A9	78	.	NM_001243036	exon4	c.C399T	p.S133S	ATACTCGGAGAAG	.	PASS	Atlas-SNP
UCHL1	7345	hgsc.bcm.edu	37	4	41259633	41259633	+	Missense_Mutation	SNP	C	C	A	rs5030732	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	29	26	0	1	0	C|0.758;A|0.242	0.242	strong	.	UCHL1	19	.	NM_004181	exon3	c.C53A	p.S18Y	TGCTGTCCCGGCT	.	PASS	Atlas-SNP
BCMO1	53630	hgsc.bcm.edu	37	16	81301694	81301694	+	Missense_Mutation	SNP	A	A	T	rs12934922	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	63	50	0	0.984375	0	A|0.670;T|0.330	0.330	strong	.	BCMO1	53	.	NM_017429	exon6	c.A801T	p.R267S	CCGGAGAATGAGC	.	PASS	Atlas-SNP
EXOSC3	51010	hgsc.bcm.edu	37	9	37780831	37780831	+	Missense_Mutation	SNP	A	A	G	rs3208406	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	58	137	0	0.442748	0	A|0.941;G|0.059	0.059	strong	.	EXOSC3	8	.	NM_016042	exon4	c.T673C	p.Y225H	GTGGATAGAGTTT	.	PASS	Atlas-SNP
NUP37	79023	hgsc.bcm.edu	37	12	102494849	102494849	+	Silent	SNP	T	T	C	rs17438178	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	62	163	0	0.430556	0	T|0.976;C|0.024	0.024	strong	.	NUP37	26	.	NM_024057	exon3	c.A315G	p.R105R	AAATAATCTAATT	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917509	2917509	+	Missense_Mutation	SNP	G	G	A	rs61754927	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	20	44	0	0.416667	0	G|0.974;A|0.026	0.026	strong	.	ZNF57	57	.	NM_173480	exon4	c.G890A	p.R297K	TTCAAAGACATGA	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123769200	123769200	+	Missense_Mutation	SNP	C	C	T	rs17611	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	46	77	0	0.534884	0	C|0.644;T|0.356	0.356	strong	.	C5	124	.	NM_001735	exon19	c.G2404A	p.V802I	TGCCAACGCCTTG	.	PASS	Atlas-SNP
PLA2G3	50487	hgsc.bcm.edu	37	22	31536133	31536133	+	Missense_Mutation	SNP	A	A	C	rs2232176	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	21	45	0	0.446809	0	A|0.211;C|0.789	0.789	strong	PLA2G3_ENST00000215885,NS,carcinoma,0,4	PLA2G3	85	4	NM_015715	exon1	c.T208G	p.S70A	TACATGACTGCAG	.	PASS	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	37	13	38237564	38237564	+	Silent	SNP	A	A	G	rs75514550	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	91	168	0	0.614865	0	A|0.988;G|0.012	0.012	strong	.	TRPC4	389	.	NM_003306	exon6	c.T1677C	p.N559N	AAATGCATTATTC	.	PASS	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	37	10	69908157	69908157	+	Missense_Mutation	SNP	T	T	C	rs11596653	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	98	207	0	0.532609	0	T|0.874;C|0.126	0.126	strong	.	MYPN	189	.	NM_032578	exon5	c.T1178C	p.V393A	CTGCAGTCATTCC	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	37	15	90335788	90335788	+	Missense_Mutation	SNP	C	C	T	rs25651	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	40	83	0	0.454545	0	C|0.642;T|0.358	0.358	strong	.	ANPEP	124	.	NM_001150	exon17	c.G2255A	p.S752N	ACCTCGCTGTACC	.	PASS	Atlas-SNP
GRK4	2868	hgsc.bcm.edu	37	4	2990499	2990499	+	Missense_Mutation	SNP	G	G	T	rs2960306	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	37	57	0	0.536232	0	G|0.638;T|0.362	0.362	strong	.	GRK4	72	.	NM_182982	exon3	c.G194T	p.R65L	GAAGACGTCTCTT	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1080954	1080954	+	Silent	SNP	G	G	A	rs11245929	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	74	124	0	0.552239	0	G|0.919;A|0.081	0.081	strong	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	614	2	NM_002457	exon10	c.G1338A	p.T446T	GAAGACGGTGGTG	.	PASS	Atlas-SNP
GTPBP4	23560	hgsc.bcm.edu	37	10	1061767	1061767	+	Silent	SNP	G	G	A	rs2306405	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	37	86	0	0.435294	0	G|0.914;A|0.086	0.086	strong	.	GTPBP4	57	.	NM_012341	exon16	c.G1683A	p.P561P	TCCCCCGTCCTCT	.	PASS	Atlas-SNP
TMPRSS11F	389208	hgsc.bcm.edu	37	4	68925094	68925094	+	Missense_Mutation	SNP	G	G	A	rs142412240	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	87	177	0	0.432836	0	G|0.999;A|0.001	0.001	strong	.	TMPRSS11F	79	.	NM_207407	exon9	c.C1108T	p.P370S	TTCCTGGAGTTAT	.	PASS	Atlas-SNP
UVRAG	7405	hgsc.bcm.edu	37	11	75852448	75852448	+	Silent	SNP	C	C	T	rs636420	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	11	23	0	0.611111	0	C|0.920;T|0.080	0.080	strong	.	UVRAG	69	.	NM_003369	exon15	c.C2091T	p.S697S	GAGTTCCGATAAG	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	37	1	62579891	62579891	+	Missense_Mutation	SNP	G	G	T	rs12140153	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	107	186	0	0.507109	0	G|0.943;T|0.057	0.057	strong	.	INADL	179	.	NM_176877	exon35	c.G4628T	p.G1543V	GCCGGGGCCTGGG	.	PASS	Atlas-SNP
F10	2159	hgsc.bcm.edu	37	13	113801737	113801737	+	Silent	SNP	C	C	T	rs5960	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	59	132	0	0.443609	0	C|0.292;T|0.708	0.708	strong	F10,NS,carcinoma,0,1	F10	53	1	NM_000504	exon7	c.C792T	p.T264T	TGGAACCATTCTG	.	PASS	Atlas-SNP
ZNF101	94039	hgsc.bcm.edu	37	19	19790690	19790690	+	Missense_Mutation	SNP	C	C	T	rs35358946	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	23	39	0	0.46	0	C|0.994;T|0.006	0.006	strong	.	ZNF101	43	.	NM_033204	exon4	c.C892T	p.H298Y	TCCCTTCACAGAC	.	PASS	Atlas-SNP
GIMAP4	55303	hgsc.bcm.edu	37	7	150269542	150269542	+	Missense_Mutation	SNP	G	G	T	rs2293172	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	63	134	0	0.516393	0	G|0.866;T|0.134	0.134	strong	.	GIMAP4	61	.	NM_018326	exon3	c.G384T	p.E128D	CACTGAGGAAGAG	.	PASS	Atlas-SNP
ACOX3	8310	hgsc.bcm.edu	37	4	8375342	8375342	+	Silent	SNP	G	G	A	rs2280571	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	80	76	0	1	0	G|0.864;A|0.136	0.136	strong	.	ACOX3	70	.	NM_003501	exon16	c.C1842T	p.S614S	CTCACCGGAGAAG	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55595114	55595114	+	Silent	SNP	G	G	T	rs34929168	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	110	274	0	0.460251	0	G|0.913;T|0.087	0.087	strong	.	OR5L2	135	.	NM_001004739	exon1	c.G420T	p.L140L	GAAGCTGCGTGTG	.	PASS	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	37	1	248512637	248512637	+	Silent	SNP	C	C	T	rs2039824	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	109	275	1	0.459916	0.00363636	C|0.518;T|0.482	0.482	strong	.	OR14C36	113	.	NM_001001918	exon1	c.C561T	p.C187C	CTCTTGCTCTGAC	.	PASS	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	37	5	179071947	179071947	+	Silent	SNP	A	A	G	rs4645306	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	169	190	0	0.590909	0	A|0.743;G|0.257	0.257	strong	.	C5orf60	24	.	NM_001142306	exon1	c.T75C	p.I25I	TGTACCAATAACA	.	PASS	Atlas-SNP
INPP4A	3631	hgsc.bcm.edu	37	2	99179971	99179971	+	Silent	SNP	C	C	G	rs61748143	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	83	143	1	0.48538	0.00699301	C|0.994;G|0.006	0.006	strong	INPP4A_ENST00000409540,caecum,carcinoma,+2,3	INPP4A	205	3	NM_001134224	exon19	c.C1914G	p.T638T	TCTCACCGACTGC	.	scavenged	Atlas-SNP
UFL1	23376	hgsc.bcm.edu	37	6	96999725	96999725	+	Silent	SNP	C	C	T	rs1127175	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	95	227	0	0.465686	0	C|0.662;T|0.338	0.338	strong	KIAA0776,NS,carcinoma,0,2	.	.	2	NM_015323	exon17	c.C1911T	p.D637D	AGAAGACTTTATT	.	PASS	Atlas-SNP
ANKEF1	63926	hgsc.bcm.edu	37	20	10030188	10030188	+	Missense_Mutation	SNP	T	T	A	rs652633	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	68	99	0	0.507463	0	T|0.761;A|0.239	0.239	strong	.	.	.	.	NM_198798	exon6	c.T971A	p.L324Q	ATCCACTGTGGGC	.	PASS	Atlas-SNP
KRTAP7-1	337878	hgsc.bcm.edu	37	21	32201822	32201822	+	Silent	SNP	G	G	T	rs9982910	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	171	177	0	0.994186	0	G|0.504;T|0.496	0.496	strong	.	.	.	.	NM_181606	exon2	c.C195A	p.G65G	GCAGCCGCCCAGG	.	PASS	Atlas-SNP
ZNF35	7584	hgsc.bcm.edu	37	3	44700347	44700347	+	Silent	SNP	G	G	A	rs139090092	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	94	209	0	0.465347	0	G|0.993;A|0.007	0.007	strong	.	ZNF35	34	.	NM_003420	exon4	c.G492A	p.R164R	AAAGAGGCAGAGA	.	PASS	Atlas-SNP
MAP3K5	4217	hgsc.bcm.edu	37	6	136977568	136977568	+	Silent	SNP	T	T	C	rs2076260	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	31	56	0	0.508197	0	T|0.613;C|0.387	0.387	strong	MAP3K5,NS,carcinoma,0,1	MAP3K5	136	1	NM_005923	exon10	c.A1557G	p.L519L	ATATATTAAAATT	.	PASS	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	37	14	73727509	73727509	+	Missense_Mutation	SNP	T	T	G	rs177389	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	30	57	0	0.47619	0	C|0.003;G|0.633;T|0.364	0.633	strong	.	PAPLN	180	.	NM_173462	exon16	c.T1997G	p.M666R	GGGGCATGCCCAG	.	PASS	Atlas-SNP
VPS37C	55048	hgsc.bcm.edu	37	11	60906279	60906279	+	Missense_Mutation	SNP	G	G	T	rs80029472	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	47	78	0	0.494737	0	C|0.000;G|0.965;T|0.035	0.035	strong	.	VPS37C	30	.	NM_017966	exon2	c.C23A	p.T8N	TGCAGGGTCTTAT	.	PASS	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	37	7	5391702	5391702	+	Missense_Mutation	SNP	C	C	G	rs3801048	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	52	93	0	0.448276	0	C|0.797;G|0.203	0.203	strong	.	TNRC18	311	.	NM_001080495	exon17	c.G5218C	p.E1740Q	GGAATTCTTCGTC	.	PASS	Atlas-SNP
C1QTNF9	338872	hgsc.bcm.edu	37	13	24890157	24890157	+	Missense_Mutation	SNP	C	C	T	rs1974332	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	78	184	0	0.376812	0	C|0.782;T|0.218	0.218	strong	.	C1QTNF9	22	.	NM_178540	exon2	c.C16T	p.L6F	TGGTGGCTTCTGC	.	PASS	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	37	10	101604207	101604207	+	Silent	SNP	C	C	T	rs3740066	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	24	33	0	0.5	0	C|0.678;T|0.322	0.322	strong	ABCC2,NS,carcinoma,0,1	ABCC2	160	1	NM_000392	exon28	c.C3972T	p.I1324I	TGACATCGGTAGC	.	PASS	Atlas-SNP
ELMO1	9844	hgsc.bcm.edu	37	7	36895342	36895342	+	Silent	SNP	C	C	T	rs13246439	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	103	175	0	0.578652	0	C|0.903;T|0.097	0.097	strong	.	ELMO1	141	.	NM_014800	exon22	c.G1998A	p.T666T	TCCATCCGTCCAG	.	PASS	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	37	3	186459775	186459775	+	Silent	SNP	C	C	T	rs5030086	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	67	144	0	0.458904	0	C|0.965;T|0.035	0.035	strong	.	KNG1	129	.	NM_001102416	exon10	c.C1590T	p.D530D	TGAAGACAGTACT	.	PASS	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	37	5	149008484	149008484	+	Silent	SNP	G	G	A	rs3733661	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	53	61	0	0.588889	0	G|0.941;A|0.059	0.059	strong	.	ARHGEF37	45	.	NM_001001669	exon12	c.G1773A	p.P591P	AACACCGGAGCCC	.	PASS	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61542863	61542863	+	Silent	SNP	G	G	A	rs11907248	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	97	148	0	0.530055	0	G|0.924;A|0.076	0.076	strong	.	DIDO1	321	.	NM_080797	exon3	c.C102T	p.I34I	CTTGGCGATAGTG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8982212	8982212	+	Silent	SNP	A	A	G	rs78717907	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	37	80	0	0.480519	0	A|0.981;G|0.019	0.019	strong	MUC16_ENST00000397910,NS,carcinoma,-2,2	MUC16	4315	2	NM_024690	exon70	c.T42063C	p.H14021H	GATGCCATGGGTC	.	PASS	Atlas-SNP
SLC4A9	83697	hgsc.bcm.edu	37	5	139740454	139740454	+	Silent	SNP	C	C	T	rs34507975	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	56	148	0	0.459016	0	C|0.790;T|0.210	0.210	strong	.	SLC4A9	125	.	NM_001258428	exon2	c.C360T	p.H120H	CCCCCACGTGCCC	.	PASS	Atlas-SNP
OR52R1	119695	hgsc.bcm.edu	37	11	4825010	4825010	+	Missense_Mutation	SNP	T	T	A	rs6578533	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	40	52	0	0.597015	0	A|0.369;N|0.000	0.369	strong	.	OR52R1	81	.	NM_001005177	exon1	c.A601T	p.N201Y	GCCCATTCCCACG	.	PASS	Atlas-SNP
GSPT1	2935	hgsc.bcm.edu	37	16	12009304	12009304	+	Missense_Mutation	SNP	C	C	A	rs11544193	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	14	26	0	0.466667	0	C|0.663;A|0.337	0.337	strong	.	GSPT1	71	.	NM_001130006	exon1	c.G274T	p.G92C	CCGGGCCCCGCAG	.	PASS	Atlas-SNP
CNGA4	1262	hgsc.bcm.edu	37	11	6262909	6262909	+	Missense_Mutation	SNP	G	G	A	rs61745230	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	70	121	0	0.564516	0	G|0.966;A|0.034	0.034	strong	.	CNGA4	96	.	NM_001037329	exon5	c.G1166A	p.R389Q	TCATCCGAGAGGG	.	PASS	Atlas-SNP
FAM160B1	57700	hgsc.bcm.edu	37	10	116602805	116602805	+	Silent	SNP	A	A	G	rs17092491	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	84	129	0	0.48	0	A|0.908;G|0.092	0.092	strong	.	FAM160B1	107	.	NM_020940	exon6	c.A636G	p.E212E	AGAGGAACTATCT	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	37	2	160737621	160737621	+	Silent	SNP	C	C	T	rs11675155	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	59	120	0	0.508621	0	C|0.818;T|0.182	0.182	strong	LY75,NS,carcinoma,0,1	LY75	151	1	NM_002349	exon8	c.G1377A	p.T459T	GTTGGGCGTCTTA	.	PASS	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225669996	225669996	+	Silent	SNP	A	A	G	rs4674940	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	82	173	0	0.443243	0	A|0.924;G|0.076	0.076	strong	.	DOCK10	308	.	NM_014689	exon36	c.T3978C	p.F1326F	CTTGTCAAATCGA	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	37	19	10088271	10088271	+	Missense_Mutation	SNP	C	C	G	rs2161468	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	54	80	0	0.5	0	C|0.631;G|0.369	0.369	strong	.	COL5A3	243	.	NM_015719	exon42	c.G3125C	p.R1042P	CTTACCCGGGACC	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2396556	2396556	+	Silent	SNP	C	C	T	rs7252886	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	60	125	0	0.447761	0	C|0.631;T|0.369	0.369	strong	.	TMPRSS9	79	.	NM_182973	exon2	c.C162T	p.G54G	ACAGGGCTTCCAC	.	PASS	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	37	9	96436037	96436037	+	Missense_Mutation	SNP	G	G	A	rs41276200	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	75	119	0	0.5	0	G|0.990;A|0.010	0.010	strong	.	PHF2	113	.	NM_005392	exon18	c.G2519A	p.S840N	GCAAGAGTGCAGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152282311	152282311	+	Missense_Mutation	SNP	C	C	T	rs12407807	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	118	250	0	0.508621	0	C|0.829;T|0.171	0.171	strong	.	FLG	900	.	NM_002016	exon3	c.G5051A	p.R1684H	TGGTGGCGGGATC	.	PASS	Atlas-SNP
CES1	1066	hgsc.bcm.edu	37	16	55855361	55855361	+	Missense_Mutation	SNP	G	G	T	rs2307227	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	46	109	0	0.474227	0	G|0.956;T|0.044	0.044	strong	.	CES1	78	.	NM_001025195	exon5	c.C612A	p.D204E	AATGTTGTCCTGG	.	PASS	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	37	1	19612477	19612477	+	Missense_Mutation	SNP	C	C	T	rs2231198	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	186	186	0	0.994652	0	C|0.603;T|0.397	0.397	strong	.	AKR7A3	30	.	NM_012067	exon3	c.G412A	p.V138M	GCTCCACGAACTT	.	PASS	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	37	4	154533506	154533506	+	Missense_Mutation	SNP	C	C	G	rs36113034	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	26	67	0	0.490566	0	C|0.988;G|0.012	0.012	strong	.	KIAA0922	214	.	NM_001131007	exon26	c.C3521G	p.S1174C	AAACATCTAGAGA	.	PASS	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	37	5	71494906	71494906	+	Silent	SNP	G	G	A	rs61734262	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	33	57	0	0.568965	0	G|0.900;A|0.100	0.100	strong	.	MAP1B	243	.	NM_005909	exon5	c.G5724A	p.K1908K	TGAGAAGATAGAG	.	PASS	Atlas-SNP
MANEA	79694	hgsc.bcm.edu	37	6	96034560	96034560	+	Missense_Mutation	SNP	C	C	T	rs62417812	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	30	69	0	0.422535	0	C|0.917;T|0.083	0.083	strong	.	MANEA	58	.	NM_024641	exon2	c.C245T	p.T82I	AAATCACTATGAA	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3351147	3351147	+	Silent	SNP	G	G	A	rs17066296	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	39	65	0	0.52	0	G|0.914;A|0.086	0.086	strong	.	CSMD1	1469	.	NM_033225	exon11	c.C1446T	p.Y482Y	TCACACGTACAAG	.	PASS	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	37	22	38130459	38130459	+	Missense_Mutation	SNP	G	G	T	rs8140207	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	68	178	0	0.414634	0	G|0.726;T|0.274	0.274	strong	.	TRIOBP	262	.	NM_001039141	exon9	c.G4116T	p.E1372D	AGCAGAGCCCCCT	.	PASS	Atlas-SNP
PRAMEF1	65121	hgsc.bcm.edu	37	1	12855752	12855752	+	Silent	SNP	G	G	A	rs80197258	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	489	10	400	5	0.0204499	0.0125	G|0.997;A|0.003	0.003	strong	PRAMEF1,NS,carcinoma,0,2	PRAMEF1	78	2	NM_023013	exon4	c.G1032A	p.L344L	TCTGCTGGAGAAA	.	scavenged	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	37	17	649067	649067	+	Missense_Mutation	SNP	A	A	G	rs1062923	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	88	80	0	0.988764	0	A|0.912;G|0.088	0.088	strong	.	GEMIN4	116	.	NM_015721	exon2	c.T2216C	p.I739T	GATACAATCTCAC	.	PASS	Atlas-SNP
PRAMEF13	400736	hgsc.bcm.edu	37	1	13448351	13448351	+	Missense_Mutation	SNP	T	T	C	rs71183793	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	576	428	354	26	0.743056	0.0734463	T|0.131;C|0.869	0.869	strong	PRAMEF13,brain,glioma,0,1	PRAMEF13	10	1	NM_001024661	exon4	c.A1124G	p.H375R	GAGCAGTGGCTCA	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280782	152280782	+	Missense_Mutation	SNP	A	A	G	rs2184953	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	489	317	305	0	0.648262	0	A|0.483;G|0.517	0.517	strong	.	FLG	900	.	NM_002016	exon3	c.T6580C	p.Y2194H	TGTCATATGTTTT	.	PASS	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279704	1279704	+	Silent	SNP	A	A	G	rs62012906		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	66	121	0	0.702128	0	.	.	weak	.	TPSB2	8	.	NM_024164	exon3	c.T96C	p.V32V	ACCCCCAACGATG	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	37	3	113376110	113376110	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	12	106	0	0.0875912	0	.	.	none	.	KIAA2018	180	.	NM_001009899	exon7	c.A4419G	p.Q1473Q	TTGCTGTTGCTGC	.	PASS	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	37	9	96411414	96411414	+	Silent	SNP	G	G	A	rs16912641	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	81	201	0	0.417526	0	G|0.954;A|0.046	0.046	strong	.	PHF2	113	.	NM_005392	exon5	c.G522A	p.L174L	GAAGCTGAAGGAG	.	PASS	Atlas-SNP
GDF5	8200	hgsc.bcm.edu	37	20	34022387	34022387	+	Missense_Mutation	SNP	A	A	C	rs224331	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	19	58	0	0.395833	0	A|0.641;C|0.359	0.359	strong	GDF5OS_ENST00000374375,NS,carcinoma,0,3	GDF5	66	3	NM_000557	exon2	c.T826G	p.S276A	GCAAGGAGGCCGG	.	PASS	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	37	1	234546245	234546245	+	Silent	SNP	C	C	T	rs1141264	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	103	246	0	0.436441	0	C|0.658;T|0.342	0.342	strong	.	TARBP1	111	.	NM_005646	exon23	c.G3738A	p.T1246T	TAAAAACGTACAA	.	PASS	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	37	18	65179657	65179657	+	Missense_Mutation	SNP	T	T	C	rs12953840	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	43	99	0	0.421569	0	T|0.998;C|0.002	0.002	strong	.	DSEL	196	.	NM_032160	exon2	c.A2219G	p.Y740C	CCCAGATAATTGA	.	PASS	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	37	19	1008683	1008683	+	Missense_Mutation	SNP	G	G	A	rs2285906	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	13	27	0	0.481481	0	G|0.875;A|0.125	0.125	strong	GRIN3B,NS,carcinoma,0,1	GRIN3B	46	1	NM_138690	exon7	c.G2533A	p.A845T	GGCAGCGCTCTGC	.	PASS	Atlas-SNP
CILP	8483	hgsc.bcm.edu	37	15	65494212	65494212	+	Missense_Mutation	SNP	A	A	G	rs2073711	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	93	0	1	0	A|0.431;G|0.569	0.569	strong	.	CILP	124	.	NM_003613	exon8	c.T1184C	p.I395T	TTACCTATGACAA	.	PASS	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	37	22	37469591	37469591	+	Silent	SNP	G	G	A	rs4820268	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	39	66	0	0.513158	0	G|0.418;A|0.582	0.582	strong	TMPRSS6,NS,carcinoma,0,2	TMPRSS6	99	2	NM_153609	exon13	c.C1563T	p.D521D	CTCTTCGTCGCTG	.	PASS	Atlas-SNP
SIX5	147912	hgsc.bcm.edu	37	19	46268902	46268902	+	Missense_Mutation	SNP	C	C	T	rs2341097	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	58	154	0	0.405594	0	C|0.678;T|0.322	0.322	strong	SIX5,NS,carcinoma,0,1	SIX5	35	1	NM_175875	exon3	c.G2077A	p.V693M	TCAGCACGGTGTG	.	PASS	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	37	19	36549684	36549684	+	Silent	SNP	G	G	A	rs61742664	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	27	76	0	0.369863	0	G|0.947;A|0.053	0.053	strong	.	WDR62	102	.	NM_173636	exon2	c.G180A	p.V60V	GCAGGTGTCACTC	.	PASS	Atlas-SNP
SETD5	55209	hgsc.bcm.edu	37	3	9517369	9517369	+	Missense_Mutation	SNP	C	C	T	rs11542009	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	60	172	0	0.410959	0	T|0.068;G|0.000;C|0.932	0.068	strong	.	SETD5	210	.	NM_001080517	exon23	c.C3923T	p.T1308I	TGTCCACAGACTC	.	PASS	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	37	5	140858245	140858245	+	Silent	SNP	C	C	T	rs3805695	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	88	189	0	0.473118	0	C|0.789;T|0.211	0.211	strong	.	PCDHGC3	173	.	NM_032402	exon1	c.C2562T	p.A854A	ACTGGCCCTTCCT	.	PASS	Atlas-SNP
ANKK1	255239	hgsc.bcm.edu	37	11	113270828	113270828	+	Missense_Mutation	SNP	G	G	A	rs1800497	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	80	175	0	0.416667	0	G|0.703;A|0.297	0.297	strong	.	ANKK1	83	.	NM_178510	exon8	c.G2137A	p.E713K	CTGGTCGAGGCAG	.	PASS	Atlas-SNP
OR10G3	26533	hgsc.bcm.edu	37	14	22038276	22038276	+	Silent	SNP	C	C	T	rs28436899	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	132	243	1	0.552301	0.00411523	C|0.978;T|0.022	0.022	strong	.	OR10G3	40	.	NM_001005465	exon1	c.G600A	p.T200T	TACAAACGTCACC	.	PASS	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	37	15	90245253	90245253	+	Silent	SNP	C	C	T	rs4316730	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	89	92	0	1	0	C|0.564;T|0.436	0.436	strong	.	WDR93	63	.	NM_020212	exon2	c.C276T	p.T92T	GCCCACCGTCTAC	.	PASS	Atlas-SNP
MFI2	4241	hgsc.bcm.edu	37	3	196743130	196743130	+	Silent	SNP	T	T	C	rs6779362	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	42	91	0	0.506024	0	T|0.686;C|0.314	0.314	strong	MFI2,NS,carcinoma,0,1	MFI2	88	1	NM_005929	exon8	c.A1011G	p.T337T	GGTCTGTGTGGCG	.	PASS	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	37	20	39991171	39991171	+	Silent	SNP	G	G	A	rs61739307	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	15	40	0	0.428571	0	G|0.883;A|0.117	0.117	strong	EMILIN3,rectum,carcinoma,0,1	EMILIN3	63	1	NM_052846	exon4	c.C1038T	p.A346A	GCTGGCGGCCTGA	.	PASS	Atlas-SNP
GPR55	9290	hgsc.bcm.edu	37	2	231775094	231775094	+	Missense_Mutation	SNP	C	C	A	rs3749073	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	60	127	0	0.472441	0	C|0.826;A|0.174	0.174	strong	.	GPR55	46	.	NM_005683	exon2	c.G584T	p.G195V	ATGATGCCCATGG	.	PASS	Atlas-SNP
PPIL3	53938	hgsc.bcm.edu	37	2	201736166	201736166	+	Missense_Mutation	SNP	A	A	C	rs7562391	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	62	122	0	0.516667	0	A|0.804;C|0.196	0.196	strong	.	PPIL3	20	.	NM_032472	exon7	c.T450G	p.D150E	GTGTACATCATTA	.	PASS	Atlas-SNP
DBX1	120237	hgsc.bcm.edu	37	11	20178717	20178717	+	Silent	SNP	G	G	T	rs831464	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	23	38	0	0.489362	0	G|0.881;T|0.119	0.119	strong	DBX1,NS,carcinoma,0,1	DBX1	39	1	NM_001029865	exon3	c.C538A	p.R180R	TGCCCCGCCGAGG	.	PASS	Atlas-SNP
RAB3GAP1	22930	hgsc.bcm.edu	37	2	135911422	135911422	+	Silent	SNP	T	T	C	rs17261772	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	122	0	1	0	C|0.626;G|0.000;T|0.374	0.626	strong	.	RAB3GAP1	87	.	NM_001172435	exon19	c.T2265C	p.F755F	ACTCTTTGATGAT	.	PASS	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	37	5	141059868	141059868	+	Silent	SNP	T	T	C	rs11167756	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	107	170	0	0.475556	0	T|0.567;C|0.433	0.433	strong	.	ARAP3	139	.	NM_022481	exon2	c.A186G	p.L62L	TGTCTGTAGCAGG	.	PASS	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	37	1	204587569	204587569	+	Missense_Mutation	SNP	G	G	C	rs3747631	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	49	93	0	0.462264	0	G|0.818;C|0.182	0.182	strong	.	LRRN2	81	.	NM_006338	exon3	c.C1552G	p.L518V	GGAGGAGAGCACG	.	PASS	Atlas-SNP
GLYATL3	389396	hgsc.bcm.edu	37	6	49485266	49485266	+	Missense_Mutation	SNP	C	C	A	rs9367358	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	154	148	0	1	0	C|0.732;A|0.268	0.268	strong	.	GLYATL3	19	.	NM_001010904	exon4	c.C310A	p.Q104K	CAAATACAAGGTG	.	PASS	Atlas-SNP
NWD1	284434	hgsc.bcm.edu	37	19	16890243	16890243	+	Missense_Mutation	SNP	C	C	G	rs773930	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	23	57	0	0.338235	0	C|0.826;G|0.174	0.174	strong	.	NWD1	303	.	NM_001007525	exon12	c.C2698G	p.Q900E	GAAGAGCAGCATG	.	PASS	Atlas-SNP
SPZ1	84654	hgsc.bcm.edu	37	5	79616544	79616544	+	Missense_Mutation	SNP	G	G	A	rs2047589	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	111	253	1	0.45679	0.00395257	G|0.941;A|0.059	0.059	strong	.	SPZ1	60	.	NM_032567	exon1	c.G510A	p.M170I	TGAAATGTTATCA	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50588131	50588131	+	Silent	SNP	C	C	T	rs138271	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	71	110	0	0.577236	0	C|0.799;T|0.201	0.201	strong	.	MOV10L1	238	.	NM_018995	exon20	c.C2715T	p.D905D	GTCGGACATCAGT	.	PASS	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	37	11	102563739	102563739	+	Silent	SNP	C	C	T	rs1276289	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	69	0	1	0	C|0.594;T|0.406	0.406	strong	MMP27,NS,carcinoma,0,1	MMP27	84	1	NM_022122	exon9	c.G1227A	p.G409G	CGGGAACCCTTTG	.	PASS	Atlas-SNP
SLC51A	200931	hgsc.bcm.edu	37	3	195956827	195956827	+	Silent	SNP	T	T	C	rs17852687	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	117	108	0	0.991525	0	T|0.544;C|0.456	0.456	strong	.	.	.	.	NM_152672	exon7	c.T675C	p.L225L	TTTCCTTGGCGTG	.	PASS	Atlas-SNP
DDX53	168400	hgsc.bcm.edu	37	X	23019346	23019346	+	Missense_Mutation	SNP	G	G	T	rs5926203	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	45	35	0	1	0	G|0.686;0|0.012	.	strong	.	DDX53	76	.	NM_182699	exon1	c.G1172T	p.R391M	AGATAAGGAAGAT	.	PASS	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	37	22	37900243	37900243	+	Silent	SNP	G	G	A	rs3817802	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	96	81	0	0.989691	0	A|0.060;C|0.000;G|0.939	0.060	strong	.	CARD10	55	.	NM_014550	exon9	c.C1584T	p.A528A	GGAGCCGGCACTG	.	PASS	Atlas-SNP
ATP9B	374868	hgsc.bcm.edu	37	18	77067000	77067000	+	Silent	SNP	T	T	G	rs3760541	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	23	95	0	0.410714	0	T|0.570;G|0.430	0.430	strong	.	ATP9B	96	.	NM_198531	exon15	c.T1539G	p.A513A	TCAAGCTGGTGGA	.	PASS	Atlas-SNP
DND1	373863	hgsc.bcm.edu	37	5	140050907	140050907	+	Missense_Mutation	SNP	C	C	T	rs1706742		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	764	132	490	0	0.172775	0	.	.	weak	.	DND1	15	.	NM_194249	exon4	c.G1033A	p.A345T	CCTCAGCCCCAGC	.	PASS	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	37	13	42875258	42875258	+	Silent	SNP	T	T	C	rs61741710	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	58	106	0	0.495726	0	T|0.992;C|0.008	0.008	strong	.	AKAP11	146	.	NM_016248	exon8	c.T2376C	p.Y792Y	CCCATATCATATT	.	PASS	Atlas-SNP
TAP2	6891	hgsc.bcm.edu	37	6	32800224	32800224	+	Silent	SNP	C	C	A	rs2228397	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	106	107	0	0.990654	0	C|0.750;A|0.250	0.250	strong	.	TAP2	98	.	NM_018833	exon7	c.G1158T	p.G386G	CTGCACCCCCAAG	.	PASS	Atlas-SNP
BAIAP2L1	55971	hgsc.bcm.edu	37	7	97922851	97922851	+	Silent	SNP	C	C	T	rs12728	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	60	121	0	0.526316	0	C|0.634;T|0.366	0.366	strong	.	BAIAP2L1	61	.	NM_018842	exon14	c.G1518A	p.S506S	GGGTGCCGAGCGA	.	PASS	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48753423	48753423	+	Silent	SNP	C	C	T	rs4148416	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	46	91	0	0.442308	0	C|0.893;T|0.107	0.107	strong	.	ABCC3	138	.	NM_003786	exon22	c.C3039T	p.G1013G	GCTGGGCGTCTAT	.	PASS	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	37	1	113237171	113237171	+	Silent	SNP	A	A	G	rs883593	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	51	109	0	0.495146	0	A|0.765;G|0.235	0.235	strong	MOV10,NS,carcinoma,0,1	MOV10	74	1	NM_020963	exon9	c.A1392G	p.T464T	GCTGACAGGGCGC	.	PASS	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	37	21	41137499	41137499	+	Silent	SNP	A	A	G	rs12626544	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	35	76	0	0.546875	0	A|0.661;G|0.339	0.339	strong	.	IGSF5	62	.	NM_001080444	exon3	c.A138G	p.Q46Q	CCCCCAAAATGCA	.	PASS	Atlas-SNP
DNAJC15	29103	hgsc.bcm.edu	37	13	43639845	43639845	+	Silent	SNP	A	A	C	rs3783044	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	24	28	0	0.585366	0	A|0.790;C|0.210	0.210	strong	.	DNAJC15	16	.	NM_013238	exon2	c.A132C	p.G44G	TGTAGGACTGGGT	.	PASS	Atlas-SNP
SMC5	23137	hgsc.bcm.edu	37	9	72933774	72933774	+	Missense_Mutation	SNP	A	A	G	rs11142365	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	58	179	0	0.381579	0	A|0.888;G|0.112	0.112	strong	.	SMC5	96	.	NM_015110	exon15	c.A2045G	p.H682R	GCAAACATCTGGA	.	PASS	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	37	1	248512767	248512767	+	Missense_Mutation	SNP	G	G	T	rs28545014	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	350	166	318	0	0.474286	0	G|0.502;T|0.498	0.498	strong	OR14C36,NS,carcinoma,-2,2	OR14C36	113	2	NM_001001918	exon1	c.G691T	p.D231Y	GGAGCAGACAGAA	.	PASS	Atlas-SNP
TEKT4	150483	hgsc.bcm.edu	37	2	95542433	95542433	+	Missense_Mutation	SNP	C	C	G	rs17120062	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	28	69	0	0.451613	0	C|0.977;G|0.023	0.023	strong	TEKT4,brain,glioma,0,1	TEKT4	72	1	NM_144705	exon6	c.C1227G	p.N409K	GACCAACAGTCTC	.	PASS	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	37	X	135310785	135310785	+	Missense_Mutation	SNP	T	T	C	rs2273221	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	125	197	1	1	0.00507614	0|0.030;C|0.478	0.478	strong	.	MAP7D3	102	.	NM_024597	exon11	c.A1883G	p.Q628R	GACCTTTGCTGCA	.	PASS	Atlas-SNP
ZNF671	79891	hgsc.bcm.edu	37	19	58233008	58233008	+	Missense_Mutation	SNP	G	G	A	rs3746207	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	74	169	0	0.480519	0	G|0.819;A|0.181	0.181	strong	.	ZNF671	55	.	NM_024833	exon4	c.C446T	p.A149V	ACTCCTGCTACAA	.	PASS	Atlas-SNP
ZNF37A	7587	hgsc.bcm.edu	37	10	38406359	38406359	+	Missense_Mutation	SNP	A	A	C	rs150470434	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	81	163	0	0.433155	0	A|0.998;C|0.002	0.002	strong	.	ZNF37A	118	.	NM_003421	exon7	c.A280C	p.N94H	AAGTTCAATGAGT	.	PASS	Atlas-SNP
SUGP1	57794	hgsc.bcm.edu	37	19	19413092	19413092	+	Missense_Mutation	SNP	C	C	T	rs17751061	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	50	110	0	0.384615	0	C|0.891;T|0.109	0.109	strong	.	SUGP1	63	.	NM_172231	exon7	c.G869A	p.R290H	TTCTCACGGTTGT	.	PASS	Atlas-SNP
ERAP2	64167	hgsc.bcm.edu	37	5	96228072	96228072	+	Missense_Mutation	SNP	C	C	T	rs75263594	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	109	162	0	0.486607	0	C|0.975;T|0.025	0.025	strong	.	ERAP2	77	.	NM_001130140	exon6	c.C1040T	p.T347M	GGGAGACGTCACT	.	PASS	Atlas-SNP
HUS1	3364	hgsc.bcm.edu	37	7	48004962	48004962	+	Silent	SNP	C	C	T	rs1056663	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	81	84	0	0.987805	0	C|0.560;T|0.440	0.440	strong	.	HUS1	36	.	NM_004507	exon8	c.G834A	p.A278A	GGACAGCGCAGGG	.	PASS	Atlas-SNP
TCHP	84260	hgsc.bcm.edu	37	12	110341933	110341933	+	Missense_Mutation	SNP	A	A	G	rs10774978	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	20	43	0	0.5	0	A|0.700;G|0.300	0.300	strong	.	TCHP	45	.	NM_001143852	exon3	c.A380G	p.K127R	CAGCCAAAGAAGA	.	PASS	Atlas-SNP
ITLN1	55600	hgsc.bcm.edu	37	1	160853312	160853312	+	Silent	SNP	C	C	T	rs79969862	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	49	155	0	0.352518	0	C|0.984;T|0.016	0.016	strong	.	ITLN1	45	.	NM_017625	exon3	c.G63A	p.E21E	ATTAGCCTCATCT	.	PASS	Atlas-SNP
RPUSD4	84881	hgsc.bcm.edu	37	11	126074192	126074192	+	Silent	SNP	A	A	G	rs2276312	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	14	41	0	0.451613	0	A|0.818;G|0.182	0.182	strong	.	RPUSD4	36	.	NM_032795	exon6	c.T828C	p.S276S	TCCAAAAGACAAG	.	PASS	Atlas-SNP
SLC35B3	51000	hgsc.bcm.edu	37	6	8413890	8413890	+	Silent	SNP	A	A	G	rs3757099	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	22	57	0	0.44898	0	A|0.639;G|0.360	0.360	strong	.	SLC35B3	38	.	NM_001142540	exon11	c.T1098C	p.L366L	AACATTAAGAAAT	.	PASS	Atlas-SNP
MATN2	4147	hgsc.bcm.edu	37	8	98991223	98991223	+	Silent	SNP	A	A	G	rs1869608	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	33	76	0	0.452055	0	A|0.775;G|0.225	0.225	strong	.	MATN2	165	.	NM_002380	exon6	c.A1068G	p.K356K	AGATAAAAAAACG	.	PASS	Atlas-SNP
TRPV3	162514	hgsc.bcm.edu	37	17	3422077	3422077	+	Silent	SNP	G	G	A	rs12946883	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	58	127	1	0.483333	0.00787402	G|0.699;A|0.301	0.301	strong	TRPV3,NS,carcinoma,0,1	TRPV3	85	1	NM_001258205	exon15	c.C1878T	p.S626S	TGCGTCGCTGAAG	.	scavenged	Atlas-SNP
DNASE2	1777	hgsc.bcm.edu	37	19	12989560	12989560	+	Silent	SNP	G	G	A	rs2293682	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	64	105	0	0.516129	0	G|0.706;A|0.294	0.294	strong	DNASE2,NS,adenoma,0,1	DNASE2	23	1	NM_001375	exon4	c.C435T	p.S145S	AGGCCAGCTGTAT	.	PASS	Atlas-SNP
PPAN	56342	hgsc.bcm.edu	37	19	10218524	10218524	+	Silent	SNP	C	C	G	rs2305791	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	37	61	0	0.486842	0	C|0.716;G|0.284	0.284	strong	.	PPAN	43	.	NM_020230	exon4	c.C336G	p.V112V	CCAGGTCAAGAAG	.	PASS	Atlas-SNP
ARHGAP39	80728	hgsc.bcm.edu	37	8	145806262	145806262	+	Silent	SNP	C	C	T	rs117042905	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	11	42	0	0.55	0	C|0.960;T|0.040	0.040	strong	ARHGAP39,NS,carcinoma,0,1	ARHGAP39	80	1	NM_025251	exon4	c.G480A	p.A160A	AAACGCCGCGGGC	.	PASS	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	37	6	29080004	29080004	+	Missense_Mutation	SNP	A	A	G	rs28757581	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	361	176	361	1	0.487535	0.00277008	A|0.839;G|0.161	0.161	strong	OR2J3,NS,carcinoma,0,1	OR2J3	53	1	NM_001005216	exon1	c.A337G	p.T113A	GGAACCACAGAGT	.	PASS	Atlas-SNP
LATS2	26524	hgsc.bcm.edu	37	13	21562371	21562371	+	Silent	SNP	C	C	T	rs59928188	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	17	23	0	0.548387	0	C|0.959;T|0.041	0.041	strong	LATS2_ENST00000382592,NS,carcinoma,-1,2	LATS2	176	2	NM_014572	exon4	c.G1548A	p.P516P	GTAGGGCGGAGGC	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10346781	10346781	+	Missense_Mutation	SNP	T	T	C	rs3744554	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	231	112	220	0	0.484848	0	T|0.573;C|0.427	0.427	strong	.	MYH4	349	.	NM_017533	exon40	c.A5731G	p.K1911E	GTTCCTTGGCCTC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280759	152280759	+	Silent	SNP	A	A	G	rs2338554	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	525	114	317	0	0.217143	0	A|0.718;G|0.282	0.282	strong	FLG,NS,carcinoma,-2,2	FLG	900	2	NM_002016	exon3	c.T6603C	p.D2201D	AGAGCCATCTCCT	.	PASS	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	37	2	86371883	86371883	+	Silent	SNP	T	T	C	rs8244	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	48	84	1	0.5	0.0119048	T|0.689;G|0.000;C|0.310;A|0.000	0.310	strong	IMMT,colon,carcinoma,-1,1	IMMT	65	1	NM_006839	exon15	c.A1785G	p.A595A	CTCAACTGCACTA	.	scavenged	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214819980	214819980	+	Missense_Mutation	SNP	C	C	T	rs3748696	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	117	176	1	0.570732	0.00568182	C|0.919;G|0.000;T|0.080	0.080	strong	.	CENPF	321	.	NM_016343	exon13	c.C7067T	p.A2356V	ATGCAGCTCTTGA	.	PASS	Atlas-SNP
SLC37A2	219855	hgsc.bcm.edu	37	11	124951719	124951719	+	Missense_Mutation	SNP	G	G	A	rs34485243	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	27	73	0	0.355263	0	G|0.965;A|0.035	0.035	strong	.	SLC37A2	105	.	NM_001145290	exon9	c.G802A	p.G268S	GAGAGCGGCCTTG	.	PASS	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	37	5	180051003	180051003	+	Missense_Mutation	SNP	T	T	C	rs307826	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	131	137	0	0.984962	0	T|0.920;G|0.006	.	strong	.	FLT4	356	.	NM_182925	exon11	c.A1480G	p.T494A	CCTGCGTGGTCAC	.	PASS	Atlas-SNP
ATF6	22926	hgsc.bcm.edu	37	1	161751741	161751741	+	Missense_Mutation	SNP	A	A	G	rs1058405	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	53	59	0	0.6625	0	A|0.793;G|0.207	0.207	strong	.	ATF6	84	.	NM_007348	exon3	c.A199G	p.M67V	GATTTGATGCCTT	.	PASS	Atlas-SNP
OR4A5	81318	hgsc.bcm.edu	37	11	51411460	51411460	+	Silent	SNP	G	G	A	rs34285763	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	41	93	0	0.44086	0	G|0.897;A|0.103	0.103	strong	OR4A5,NS,carcinoma,-1,1	OR4A5	116	1	NM_001005272	exon1	c.C936T	p.S312S	GAGGACGGACACT	.	PASS	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	37	2	202245423	202245423	+	Missense_Mutation	SNP	A	A	T	rs34594680	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	63	133	0	0.529412	0	A|0.935;T|0.065	0.065	strong	.	TRAK2	62	.	NM_015049	exon16	c.T2588A	p.I863N	GGACCAATTTCTG	.	PASS	Atlas-SNP
FBXO4	26272	hgsc.bcm.edu	37	5	41925431	41925431	+	Missense_Mutation	SNP	G	G	A	rs2231916	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	10	16	0	0.5	0	.	.	alt	.	FBXO4	42	.	NM_033484	exon1	c.G20A	p.R7H	AGCCGCGCAGCGG	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	37	10	129914162	129914162	+	Missense_Mutation	SNP	G	G	C	rs143381225	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	20	41	0	0.5	0	G|0.998;C|0.002	0.002	strong	.	MKI67	363	.	NM_002417	exon7	c.C510G	p.D170E	TTTTGAGTCATCT	.	PASS	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982271	240982271	+	Silent	SNP	G	G	A	rs76841013	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	30	142	0	0.857143	0	G|0.755;A|0.245	0.245	strong	PRR21,NS,lymphoid_neoplasm,0,4	PRR21	53	4	NM_001080835	exon1	c.C129T	p.H43H	AGAGCCGTGGATG	.	PASS	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	37	11	3249984	3249984	+	Missense_Mutation	SNP	C	C	T	rs12295710	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	28	54	0	0.430769	0	C|0.601;T|0.399	0.399	strong	MRGPRE,colon,carcinoma,+2,1	MRGPRE	35	1	NM_001039165	exon2	c.G46A	p.G16S	GGGCGCCGTTGGC	.	PASS	Atlas-SNP
MPHOSPH10	10199	hgsc.bcm.edu	37	2	71376999	71376999	+	Missense_Mutation	SNP	G	G	A	rs6574	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	302	132	323	0	0.437086	0	G|0.736;T|0.001	.	strong	.	MPHOSPH10	81	.	NM_005791	exon11	c.G1900A	p.E634K	CAGGATGAAGGTA	.	PASS	Atlas-SNP
NEK2	4751	hgsc.bcm.edu	37	1	211840498	211840498	+	Missense_Mutation	SNP	T	T	C	rs2230489	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	111	185	0	0.511521	0	T|0.684;G|0.030	.	strong	.	NEK2	49	.	NM_002497	exon7	c.A1061G	p.N354S	CTGTAGTTCTTCA	.	PASS	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	37	14	56096686	56096686	+	Silent	SNP	A	A	C	rs74053638	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	72	154	0	0.45	0	A|0.976;C|0.024	0.024	strong	.	KTN1	147	.	NM_004986	exon7	c.A1092C	p.T364T	GATGACAGAGAAA	.	PASS	Atlas-SNP
TKT	7086	hgsc.bcm.edu	37	3	53269163	53269163	+	Silent	SNP	G	G	A	rs1051483	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	43	95	0	0.452632	0	G|0.833;C|0.000;A|0.167	0.167	strong	.	TKT	38	.	NM_001258028	exon6	c.C489T	p.D163D	CTCCCCGTCTCCC	.	PASS	Atlas-SNP
WDR72	256764	hgsc.bcm.edu	37	15	53907948	53907948	+	Missense_Mutation	SNP	G	G	A	rs17730281	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	100	76	0	1	0	G|0.773;A|0.227	0.227	strong	.	WDR72	177	.	NM_182758	exon15	c.C2455T	p.L819F	TATTGAGGTGCTT	.	PASS	Atlas-SNP
ACSL1	2180	hgsc.bcm.edu	37	4	185687863	185687863	+	Silent	SNP	A	A	G	rs11727009	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	100	110	0	1	0	A|0.768;G|0.232	0.232	strong	.	ACSL1	77	.	NM_001995	exon13	c.T1176C	p.F392F	GGAGGCAAAGTCC	.	PASS	Atlas-SNP
USP25	29761	hgsc.bcm.edu	37	21	17250244	17250244	+	Missense_Mutation	SNP	A	A	C	rs149241751	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	98	160	0	0.553672	0	A|0.999;C|0.001	0.001	strong	.	USP25	156	.	NM_013396	exon23	c.A2929C	p.K977Q	GAAGAAAAGGATA	.	PASS	Atlas-SNP
CDKAL1	54901	hgsc.bcm.edu	37	6	21201493	21201493	+	Silent	SNP	G	G	A	rs9465994	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	29	44	0	0.568627	0	G|0.451;A|0.549	0.549	strong	CDKAL1,NS,carcinoma,+1,1	CDKAL1	55	1	NM_017774	exon15	c.G1536A	p.S512S	AGTCTCGGGTTTG	.	PASS	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	37	20	39991144	39991144	+	Silent	SNP	A	A	G	rs41307177	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	19	42	0	0.5	0	A|0.888;G|0.112	0.112	strong	EMILIN3,rectum,carcinoma,0,1	EMILIN3	63	1	NM_052846	exon4	c.T1065C	p.L355L	GCCATCAAGGCTC	.	PASS	Atlas-SNP
OR52N4	390072	hgsc.bcm.edu	37	11	5776595	5776595	+	Missense_Mutation	SNP	T	T	G	rs12363178	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	254	113	247	1	0.444882	0.00404858	T|0.816;G|0.184	0.184	strong	.	OR52N4	55	.	NM_001005175	exon1	c.T625G	p.W209G	CTGATTTGGGGCT	.	PASS	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	37	3	122646828	122646828	+	Missense_Mutation	SNP	A	A	G	rs2276774	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	41	89	0	0.353448	0	A|0.858;G|0.142	0.142	strong	.	SEMA5B	303	.	NM_001256347	exon8	c.T821C	p.I274T	TTCTCAATAGTCC	.	PASS	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	37	1	203743122	203743122	+	Silent	SNP	G	G	A	rs3820194	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	68	176	1	0.433121	0.00568182	G|0.691;A|0.309	0.309	strong	LAX1,NS,carcinoma,+1,1	LAX1	48	1	NM_017773	exon5	c.G510A	p.S170S	TCCCTCGGCACAC	.	scavenged	Atlas-SNP
HLA-DMA	3108	hgsc.bcm.edu	37	6	32917544	32917544	+	Missense_Mutation	SNP	C	C	T	rs201644248		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	39	87	0	0.481481	0	.	.	weak	.	HLA-DMA	20	.	NM_006120	exon3	c.G496A	p.V166I	CAGGGACGGAATG	.	PASS	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	37	1	24979487	24979487	+	Missense_Mutation	SNP	C	C	T	rs144082896	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	237	100	232	0	0.421941	0	C|0.997;T|0.003	0.003	strong	.	SRRM1	81	.	NM_005839	exon8	c.C1004T	p.P335L	CTCCTCCACCAAG	.	PASS	Atlas-SNP
NCAPD2	9918	hgsc.bcm.edu	37	12	6635274	6635274	+	Missense_Mutation	SNP	G	G	A	rs10849482	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	33	58	0	0.417722	0	G|0.854;A|0.146	0.146	strong	.	NCAPD2	99	.	NM_014865	exon19	c.G2389A	p.V797M	ACACTGGTGAGCA	.	PASS	Atlas-SNP
CLEC10A	10462	hgsc.bcm.edu	37	17	6979179	6979179	+	Silent	SNP	A	A	G	rs364569	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	41	105	0	0.398058	0	A|0.544;G|0.456	0.456	strong	.	CLEC10A	40	.	NM_182906	exon7	c.T546C	p.P182P	GTTGACAGGGCAG	.	PASS	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	37	14	102808273	102808273	+	Missense_Mutation	SNP	C	C	A	rs1053019	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	69	139	0	0.418182	0	C|0.920;A|0.080	0.080	strong	.	ZNF839	41	.	NM_018335	exon8	c.C2541A	p.F847L	CCGGTTCCCCTGT	.	PASS	Atlas-SNP
CPPED1	55313	hgsc.bcm.edu	37	16	12798778	12798778	+	Missense_Mutation	SNP	C	C	T	rs149102231	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	45	71	0	0.511364	0	C|0.987;T|0.013	0.013	strong	.	CPPED1	41	.	NM_018340	exon3	c.G418A	p.E140K	ACTCCTCGACGGT	.	PASS	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79069121	79069121	+	Silent	SNP	A	A	G	rs11854507	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	27	78	0	0.391304	0	A|0.706;G|0.294	0.294	strong	.	ADAMTS7	142	.	NM_014272	exon10	c.T1530C	p.A510A	GTCCACAGCTGCA	.	PASS	Atlas-SNP
NOMO1	23420	hgsc.bcm.edu	37	16	14969016	14969016	+	Missense_Mutation	SNP	T	T	A	rs79100490	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	870	263	603	1	0.302299	0.00165837	.	.	weak	.	NOMO1	60	.	NM_014287	exon19	c.T2178A	p.N726K	CGGCAATGAGGAA	.	PASS	Atlas-SNP
ATP6V1C2	245973	hgsc.bcm.edu	37	2	10908893	10908893	+	Missense_Mutation	SNP	A	A	G	rs1198849	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	66	59	0	1	0	A|0.600;G|0.400	0.400	strong	.	ATP6V1C2	73	.	NM_001039362	exon6	c.A427G	p.N143D	GCCTACAACACTC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9005719	9005719	+	Silent	SNP	A	A	G	rs4804375	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	125	147	1	0.984252	0.00680272	A|0.267;G|0.733	0.733	strong	.	MUC16	4315	.	NM_024690	exon46	c.T39687C	p.D13229D	TACTCCATCCTTC	.	PASS	Atlas-SNP
KLHDC8A	55220	hgsc.bcm.edu	37	1	205308368	205308368	+	Silent	SNP	C	C	T	rs1105387	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	29	53	0	0.446154	0	C|0.754;T|0.246	0.246	strong	.	KLHDC8A	31	.	NM_018203	exon4	c.G711A	p.R237R	GGGCTGCCGGTAG	.	PASS	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	37	21	37664501	37664501	+	Silent	SNP	G	G	A	rs9978057	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	36	105	1	0.455696	0.00952381	G|0.751;A|0.249	0.249	strong	DOPEY2,NS,carcinoma,0,1	DOPEY2	184	1	NM_005128	exon36	c.G6615A	p.R2205R	TGTCAGGATTCTA	.	scavenged	Atlas-SNP
C2orf57	165100	hgsc.bcm.edu	37	2	232457880	232457880	+	Missense_Mutation	SNP	T	T	C	rs74460533	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	38	120	0	0.4	0	T|0.948;C|0.052	0.052	strong	C2orf57,NS,carcinoma,+1,1	C2orf57	35	1	NM_152614	exon1	c.T218C	p.V73A	GTGCAGTTGTTCC	.	PASS	Atlas-SNP
FAM111A	63901	hgsc.bcm.edu	37	11	58920492	58920492	+	Missense_Mutation	SNP	C	C	G	rs116918730	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	45	61	0	0.46875	0	C|0.966;G|0.034	0.034	strong	.	FAM111A	57	.	NM_001142520	exon5	c.C1351G	p.Q451E	GGACAACAAGTAC	.	PASS	Atlas-SNP
ZNF763	284390	hgsc.bcm.edu	37	19	12087921	12087921	+	Silent	SNP	G	G	C	rs376310072	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	15	174	3	0.0777202	0.0172414	.	.	alt	ZNF763,NS,carcinoma,+1,2	ZNF763	31	2	NM_001012753	exon2	c.G81C	p.S27S	TATTTCGCAGAGG	.	scavenged	Atlas-SNP
CYB5RL	606495	hgsc.bcm.edu	37	1	54661150	54661150	+	Missense_Mutation	SNP	C	C	T	rs946448	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	36	47	0	0.5	0	C|0.708;T|0.292	0.292	strong	.	CYB5RL	17	.	NM_001031672	exon3	c.G140A	p.R47K	TCCCACCTTGCCA	.	PASS	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	37	1	205817018	205817018	+	Missense_Mutation	SNP	T	T	C	rs201477375	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	552	210	414	0	0.380435	0	.	.	weak	.	PM20D1	56	.	NM_152491	exon2	c.A251G	p.H84R	CCTTTATGAATGT	.	PASS	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	37	12	53090190	53090190	+	Silent	SNP	C	C	T	rs7138818	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	45	51	0	1	0	C|0.590;T|0.410	0.410	strong	KRT77,NS,carcinoma,0,1	KRT77	58	1	NM_175078	exon3	c.G783A	p.R261R	GCCAGTCCTCTTG	.	PASS	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	37	6	30672463	30672463	+	Silent	SNP	G	G	A	rs10947087	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	118	223	0	0.506438	0	G|0.962;A|0.038	0.038	strong	.	MDC1	218	.	NM_014641	exon10	c.C4497T	p.S1499S	GGAGGCGGAAGCC	.	PASS	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	37	17	5290033	5290033	+	Silent	SNP	T	T	C	rs1071705	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	83	156	0	0.538961	0	T|0.566;C|0.434	0.434	strong	.	NUP88	47	.	NM_002532	exon16	c.A2157G	p.K719K	CTCCTCTTTCAGG	.	PASS	Atlas-SNP
MLPH	79083	hgsc.bcm.edu	37	2	238443226	238443226	+	Missense_Mutation	SNP	A	A	G	rs2292884	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	81	176	0	0.435484	0	A|0.644;G|0.356	0.356	strong	.	MLPH	41	.	NM_024101	exon9	c.A1040G	p.H347R	ATAAGCATATTTC	.	PASS	Atlas-SNP
PASK	23178	hgsc.bcm.edu	37	2	242054718	242054718	+	Silent	SNP	G	G	A	rs61748659	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	56	140	0	0.414815	0	G|0.982;A|0.018	0.018	strong	.	PASK	230	.	NM_015148	exon13	c.C3183T	p.H1061H	ATTGGCGTGCTCC	.	PASS	Atlas-SNP
BBS12	166379	hgsc.bcm.edu	37	4	123664427	123664427	+	Silent	SNP	G	G	C	rs13135766	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	53	156	0	0.365517	0	G|0.853;C|0.147	0.147	strong	.	BBS12	63	.	NM_001178007	exon3	c.G1380C	p.V460V	ACAAGTGAATGAA	.	PASS	Atlas-SNP
GLDC	2731	hgsc.bcm.edu	37	9	6589230	6589230	+	Silent	SNP	C	C	T	rs121964976	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	29	87	0	0.376623	0	T|0.021;G|0.000;C|0.978	0.021	strong	.	GLDC	118	.	NM_000170	exon12	c.G1545A	p.R515R	GCTGGTCCTCTTG	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104633227	104633227	+	Silent	SNP	A	A	C	rs76304797	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	65	66	0	0.984848	0	A|0.973;C|0.027	0.027	strong	.	KIF26A	84	.	NM_015656	exon5	c.A955C	p.R319R	TCCAAGAGGAAGA	.	PASS	Atlas-SNP
SLC39A5	283375	hgsc.bcm.edu	37	12	56630764	56630764	+	Silent	SNP	G	G	A	rs17118409	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	31	69	0	0.462687	0	G|0.959;A|0.041	0.041	strong	.	SLC39A5	52	.	NM_173596	exon11	c.G1257A	p.A419A	CTTAGCGGTCTTC	.	PASS	Atlas-SNP
RPLP0	6175	hgsc.bcm.edu	37	12	120637199	120637199	+	Silent	SNP	G	G	A	rs1045110	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	64	76	0	0.646465	0	G|0.926;A|0.074	0.074	strong	RPLP0,NS,carcinoma,-2,1	RPLP0	27	1	NM_053275	exon3	c.C144T	p.R48R	CTTCCCGCGAAGG	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44060775	44060775	+	Missense_Mutation	SNP	C	C	T	rs63750417	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	57	42	0	0.982759	0	C|0.552;A|0.040	.	strong	.	MAPT	135	.	NM_001123066	exon6	c.C605T	p.P202L	GGCCGCCGCTGAA	.	PASS	Atlas-SNP
APOBEC3H	164668	hgsc.bcm.edu	37	22	39496336	39496336	+	Missense_Mutation	SNP	G	G	T	rs139293	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	71	157	0	0.467105	0	A|0.000;G|0.804;T|0.196	0.196	strong	.	APOBEC3H	28	.	NM_001166003	exon2	c.G53T	p.R18L	AGCGCCGCCTCAG	.	PASS	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	37	11	68855363	68855363	+	Missense_Mutation	SNP	G	G	A	rs3829241	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	58	118	0	0.5	0	G|0.756;A|0.244	0.244	strong	.	TPCN2	63	.	NM_139075	exon25	c.G2201A	p.G734E	AGCCCGGGGAGGA	.	PASS	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	37	12	53227803	53227803	+	Missense_Mutation	SNP	A	A	G	rs2638497	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	95	84	0	0.989583	0	A|0.331;G|0.669	0.669	strong	KRT79,NS,carcinoma,+1,1	KRT79	78	1	NM_175834	exon1	c.T242C	p.L81S	CGCCCCAACAAGG	.	PASS	Atlas-SNP
PSD3	23362	hgsc.bcm.edu	37	8	18725428	18725428	+	Silent	SNP	A	A	G	rs17127370	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	87	185	0	0.47541	0	A|0.898;G|0.102	0.102	strong	.	PSD3	142	.	NM_015310	exon4	c.T1390C	p.L464L	AGTATAATGTCTC	.	PASS	Atlas-SNP
ACTL7B	10880	hgsc.bcm.edu	37	9	111617650	111617650	+	Silent	SNP	G	G	A	rs11543179	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	19	42	0	0.475	0	G|0.782;A|0.218	0.218	strong	.	ACTL7B	57	.	NM_006686	exon1	c.C561T	p.Y187Y	GTAGGAGTAGATG	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79400868	79400868	+	Silent	SNP	C	C	T	rs11098194	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	83	122	0	0.497006	0	C|0.673;T|0.327	0.327	strong	.	FRAS1	779	.	NM_025074	exon56	c.C8439T	p.D2813D	TGAGGACGCAGGT	.	PASS	Atlas-SNP
DEFB114	245928	hgsc.bcm.edu	37	6	49928116	49928116	+	Silent	SNP	G	G	A	rs17736782	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	61	94	0	0.476562	0	G|0.916;A|0.084	0.084	strong	.	DEFB114	12	.	NM_001037499	exon2	c.C99T	p.Y33Y	ACGACCGTAACGT	.	PASS	Atlas-SNP
H6PD	9563	hgsc.bcm.edu	37	1	9323910	9323910	+	Missense_Mutation	SNP	G	G	A	rs6688832	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	36	61	0	0.486486	0	G|0.662;A|0.338	0.338	strong	.	H6PD	71	.	NM_004285	exon5	c.G1358A	p.R453Q	CTGTGCGGGAGCG	.	PASS	Atlas-SNP
CAPN12	147968	hgsc.bcm.edu	37	19	39233146	39233146	+	Silent	SNP	A	A	G	rs936524	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	297	296	283	2	0.996633	0.00706714	A|0.326;G|0.674	0.674	strong	.	CAPN12	43	.	NM_144691	exon3	c.T330C	p.A110A	GGCGGCAGCTGCA	.	PASS	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	37	13	38138689	38138689	+	Missense_Mutation	SNP	C	C	T	rs9547952	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	24	78	0	0.369231	0	C|0.916;T|0.084	0.084	strong	.	POSTN	161	.	NM_006475	exon22	c.G2440A	p.V814M	TCCTCACGGGTGT	.	PASS	Atlas-SNP
TJAP1	93643	hgsc.bcm.edu	37	6	43472708	43472708	+	Silent	SNP	T	T	C	rs3734689	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	55	85	0	0.478261	0	T|0.953;C|0.047	0.047	strong	.	TJAP1	35	.	NM_001146016	exon11	c.T789C	p.H263H	TGTGCATGTGGAC	.	PASS	Atlas-SNP
PMPCA	23203	hgsc.bcm.edu	37	9	139306467	139306467	+	Silent	SNP	C	C	T	rs10870144	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	371	180	333	1	0.485175	0.003003	C|0.870;T|0.130	0.130	strong	.	PMPCA	29	.	NM_015160	exon2	c.C90T	p.Y30Y	TGCGTACAGACGG	.	PASS	Atlas-SNP
FUCA2	2519	hgsc.bcm.edu	37	6	143825104	143825104	+	Missense_Mutation	SNP	G	G	T	rs11155297	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	92	168	1	0.560976	0.00595238	G|0.844;T|0.156	0.156	strong	FUCA2,colon,carcinoma,0,1	FUCA2	28	1	NM_032020	exon3	c.C698A	p.A233E	TCCGGTGCTCCTC	.	scavenged	Atlas-SNP
FCHSD1	89848	hgsc.bcm.edu	37	5	141029072	141029072	+	Silent	SNP	G	G	A	rs11739451	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	30	67	0	0.555556	0	G|0.879;A|0.121	0.121	strong	.	FCHSD1	51	.	NM_033449	exon5	c.C265T	p.L89L	CCAGCAGGCAGCG	.	PASS	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	37	1	89849268	89849268	+	Silent	SNP	T	T	C	rs41288387	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	343	183	343	0	0.533528	0	T|0.945;C|0.055	0.055	strong	.	GBP6	87	.	NM_198460	exon9	c.T1423C	p.L475L	TCCATCTTGCAGT	.	PASS	Atlas-SNP
MS4A14	84689	hgsc.bcm.edu	37	11	60184191	60184191	+	Missense_Mutation	SNP	G	G	A	rs3825020	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	35	64	0	0.472973	0	G|0.445;A|0.555	0.555	strong	.	MS4A14	120	.	NM_001261828	exon6	c.G1849A	p.G617R	AAAGATGGACAAG	.	PASS	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	37	19	57839567	57839567	+	Missense_Mutation	SNP	T	T	A	rs1968090	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	88	61	0	1	0	T|0.268;A|0.732	0.732	strong	.	ZNF543	61	.	NM_213598	exon4	c.T737A	p.L246H	AGCACCTCATCAT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214814778	214814778	+	Missense_Mutation	SNP	G	G	A	rs3795518	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	70	183	0	0.4	0	G|0.883;A|0.117	0.117	strong	.	CENPF	321	.	NM_016343	exon12	c.G3097A	p.G1033R	GAAACCGGAAATG	.	PASS	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73455273	73455273	+	Silent	SNP	T	T	C	rs3752751	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	42	73	0	0.461538	0	T|0.408;C|0.591	0.591	strong	.	CDH23	365	.	NM_022124	exon21	c.T2388C	p.D796D	CTCTGATGTGACC	.	PASS	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	37	12	6030301	6030301	+	Missense_Mutation	SNP	G	G	A	rs3741901	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	36	101	1	0.349515	0.00990099	G|0.943;A|0.057	0.057	strong	ANO2_ENST00000327087,lower_third,carcinoma,+1,2	ANO2	309	2	NM_020373	exon3	c.C427T	p.P143S	CGAGCGGTCCCAG	.	scavenged	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225528183	225528183	+	Missense_Mutation	SNP	C	C	A	rs3856145	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	314	137	233	0	0.436306	0	C|0.498;A|0.500	0.500	strong	.	DNAH14	300	.	NM_001373	exon67	c.C10179A	p.D3393E	AATAGACAACCCC	.	PASS	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	37	15	90771704	90771704	+	Silent	SNP	G	G	A	rs3751656	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	24	45	0	0.45283	0	G|0.746;A|0.254	0.254	strong	.	SEMA4B	51	.	NM_020210	exon15	c.G2343A	p.P781P	CACCCCGCTCGAT	.	PASS	Atlas-SNP
CD101	9398	hgsc.bcm.edu	37	1	117560058	117560058	+	Missense_Mutation	SNP	C	C	G	rs17235773	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	77	148	0	0.553957	0	C|0.944;G|0.056	0.056	strong	.	CD101	95	.	NM_001256109	exon5	c.C1575G	p.S525R	TCTGAGCTGGACT	.	PASS	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	37	3	10302056	10302056	+	Missense_Mutation	SNP	A	A	G	rs2241314	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	41	80	0	0.42268	0	A|0.772;G|0.228	0.228	strong	.	TATDN2	59	.	NM_014760	exon3	c.A650G	p.H217R	CAGAGCATCCCAG	.	PASS	Atlas-SNP
TECPR1	25851	hgsc.bcm.edu	37	7	97854393	97854393	+	Silent	SNP	G	G	A	rs2291745	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	76	185	0	0.452381	0	G|0.727;A|0.273	0.273	strong	.	TECPR1	77	.	NM_015395	exon18	c.C2535T	p.Y845Y	CCACATGTACCGG	.	PASS	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	37	19	19656615	19656615	+	Silent	SNP	C	C	T	rs61744761	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	76	188	0	0.426966	0	C|0.845;T|0.155	0.155	strong	.	CILP2	84	.	NM_153221	exon8	c.C3261T	p.G1087G	TGACGGCTTCTCC	.	PASS	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	37	1	18808056	18808056	+	Missense_Mutation	SNP	G	G	C	rs7515150	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	22	47	0	0.44898	0	G|0.888;C|0.112	0.112	strong	.	KLHDC7A	60	.	NM_152375	exon1	c.G581C	p.R194P	AACCCCGTGAGCA	.	PASS	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	37	19	4409756	4409756	+	Silent	SNP	A	A	G	rs2230636	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	35	32	0	1	0	A|0.809;G|0.191	0.191	strong	.	CHAF1A	69	.	NM_005483	exon3	c.A960G	p.R320R	CCGCAGAGTGAGT	.	PASS	Atlas-SNP
USP48	84196	hgsc.bcm.edu	37	1	22109370	22109370	+	Silent	SNP	G	G	A	rs10917042	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	22	55	0	0.458333	0	G|0.772;A|0.228	0.228	strong	.	USP48	91	.	NM_001032730	exon1	c.C81T	p.H27H	CTCGATGTGCTCC	.	PASS	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	37	16	50368663	50368663	+	Silent	SNP	G	G	A	rs1062348	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	80	147	0	0.551724	0	G|0.826;A|0.174	0.174	strong	.	BRD7	61	.	NM_013263	exon7	c.C846T	p.A282A	TGCTTCGGCATCT	.	PASS	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53104078	53104078	+	Silent	SNP	G	G	A	rs72598686	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	38	57	0	0.644068	0	G|0.706;A|0.294	0.294	strong	POM121L12,NS,carcinoma,0,1	POM121L12	146	1	NM_182595	exon1	c.G714A	p.P238P	GAAGCCGAGCCTC	.	PASS	Atlas-SNP
KRTAP12-2	353323	hgsc.bcm.edu	37	21	46086718	46086718	+	Missense_Mutation	SNP	G	G	C	rs7276859	bycluster;by2hit2allele;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	107	117	0	0.990741	0	.	.	alt	.	KRTAP12-2	10	.	NM_181684	exon1	c.C86G	p.S29C	TGGCAGGAGCTGG	.	PASS	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	37	6	26104448	26104448	+	Silent	SNP	A	A	G	rs198852	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	45	82	0	0.445545	0	A|0.734;G|0.266	0.266	strong	.	HIST1H4C	14	.	NM_003542	exon1	c.A273G	p.L91L	TGCCCTAAAACGT	.	PASS	Atlas-SNP
MTIF2	4528	hgsc.bcm.edu	37	2	55476591	55476591	+	Silent	SNP	G	G	A	rs2576709	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	292	147	279	1	0.503425	0.00358423	A|0.032;C|0.000;G|0.968	0.032	strong	.	MTIF2	64	.	NM_002453	exon9	c.C921T	p.Y307Y	CACATCGTAAGCC	.	PASS	Atlas-SNP
INO80D	54891	hgsc.bcm.edu	37	2	206874339	206874339	+	Silent	SNP	G	G	A	rs817991	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	76	124	0	0.550725	0	G|0.629;A|0.371	0.371	strong	.	INO80D	134	.	NM_017759	exon9	c.C1722T	p.P574P	GCTGGCGGGCATG	.	PASS	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	37	7	150649531	150649531	+	Silent	SNP	G	G	A	rs1805120	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	40	93	0	0.449438	0	G|0.708;A|0.292	0.292	strong	.	KCNH2	157	.	NM_000238	exon6	c.C1539T	p.F513F	AGAGCCGAAGATG	.	PASS	Atlas-SNP
OCA2	4948	hgsc.bcm.edu	37	15	28090173	28090173	+	Silent	SNP	C	C	T	rs12592307	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	94	184	0	0.474747	0	C|0.769;T|0.231	0.231	strong	OCA2,NS,carcinoma,0,1	OCA2	173	1	NM_000275	exon23	c.G2364A	p.S788S	GTTTGCCGACGCG	.	PASS	Atlas-SNP
SYT15	83849	hgsc.bcm.edu	37	10	46968665	46968665	+	Silent	SNP	G	G	A	rs200814731	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	23	66	0	0.194915	0	G|0.911;A|0.089	0.089	strong	SYT15_ENST00000416127,colon,carcinoma,0,15	SYT15	165	15	NM_031912	exon3	c.C271T	p.L91L	TGTGCAGGGGCAC	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	37	1	62380298	62380298	+	Missense_Mutation	SNP	G	G	A	rs1056513	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	272	270	303	0	0.992647	0	G|0.530;A|0.470	0.470	strong	.	INADL	179	.	NM_176877	exon26	c.G3532A	p.G1178S	ATCACCGGTAACC	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114490229	114490229	+	Silent	SNP	T	T	G	rs10512411	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	70	158	0	0.463576	0	T|0.852;G|0.148	0.148	strong	C9orf84_ENST00000374287,NS,carcinoma,-2,2	C9orf84	207	2	NM_173521	exon11	c.A1326C	p.A442A	TTCTTTTGCCAGA	.	PASS	Atlas-SNP
CSGALNACT1	55790	hgsc.bcm.edu	37	8	19316086	19316086	+	Silent	SNP	G	G	A	rs12155539	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	324	156	303	1	0.481481	0.00330033	G|0.616;A|0.384	0.384	strong	CSGALNACT1,colon,carcinoma,0,1	CSGALNACT1	72	1	NM_018371	exon5	c.C702T	p.H234H	GAATTCGTGTTTG	.	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	133981746	133981746	+	Silent	SNP	G	G	A	rs17693031	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	33	89	0	0.388235	0	G|0.971;A|0.029	0.029	strong	TG,NS,carcinoma,+2,1	TG	416	1	NM_003235	exon32	c.G5907A	p.P1969P	CCTGCCGTTCCAA	.	PASS	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	154681216	154681216	+	Silent	SNP	G	G	A	rs1129301	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	42	68	0	0.488372	0	A|0.260;C|0.000;G|0.739;N|0.000	0.260	strong	.	DPP6	383	.	NM_130797	exon25	c.G2427A	p.R809R	AATTAGGGGAAAG	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133541454	133541454	+	Missense_Mutation	SNP	A	A	G	rs12691830	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	204	166	2	1	0.0120482	A|0.299;G|0.701	0.701	strong	NCKAP5,colon,carcinoma,0,1	NCKAP5	322	1	NM_207363	exon14	c.T2930C	p.I977T	GCAGAAATTCCTT	.	scavenged	Atlas-SNP
NOTCH2NL	388677	hgsc.bcm.edu	37	1	145248876	145248876	+	Missense_Mutation	SNP	A	A	G	rs61788900	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	3113	520	2635	239	0.167041	0.0907021	.	.	weak	NOTCH2NL_ENST00000362074,colon,carcinoma,0,2	NOTCH2NL	100	2	NM_203458	exon2	c.A20G	p.N7S	ACCACAATGGCAC	.	scavenged	Atlas-SNP
DBNDD1	79007	hgsc.bcm.edu	37	16	90075226	90075226	+	Silent	SNP	C	C	T	rs4362387	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	23	49	0	0.5	0	C|0.947;T|0.053	0.053	strong	.	DBNDD1	9	.	NM_024043	exon3	c.G345A	p.S115S	GTCGTCCGAGTCA	.	PASS	Atlas-SNP
RRN3	54700	hgsc.bcm.edu	37	16	15178499	15178499	+	Missense_Mutation	SNP	G	G	A	rs76732059	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	374	87	241	0	0.23262	0	G|0.960;A|0.040	0.040	strong	.	RRN3	36	.	NM_018427	exon7	c.C596T	p.S199L	ACTCACGATGGTA	.	PASS	Atlas-SNP
MMACHC	25974	hgsc.bcm.edu	37	1	45973928	45973928	+	Silent	SNP	G	G	A	rs2275276	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	86	168	0	0.462366	0	G|0.526;A|0.474	0.474	strong	.	MMACHC	22	.	NM_015506	exon3	c.G321A	p.V107V	CGAGGTGCACCCC	.	PASS	Atlas-SNP
FUT2	2524	hgsc.bcm.edu	37	19	49206674	49206674	+	Nonsense_Mutation	SNP	G	G	A	rs601338	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	22	38	0	0.458333	0	G|0.575;A|0.425	0.425	strong	FUT2,NS,carcinoma,0,2	FUT2	30	2	NM_001097638	exon2	c.G461A	p.W154X	GCTCCTGGACCTT	.	PASS	Atlas-SNP
MYBPH	4608	hgsc.bcm.edu	37	1	203144794	203144794	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	5	236	0	0.0206612	0	.	.	none	MYBPH,NS,carcinoma,-2,1	MYBPH	41	1	NM_004997	exon1	c.C90T	p.P30P	TTCTCCGGGAGGC	.	scavenged	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	37	1	208202279	208202279	+	Silent	SNP	G	G	A	rs113155197	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	68	131	0	0.489209	0	G|0.997;A|0.003	0.003	strong	.	PLXNA2	178	.	NM_025179	exon30	c.C5334T	p.F1778F	GTCCATGAAGGTC	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2413961	2413961	+	Silent	SNP	G	G	C	rs10153475	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	55	91	0	0.478261	0	G|0.632;C|0.368	0.368	strong	TMPRSS9,NS,carcinoma,0,1	TMPRSS9	79	1	NM_182973	exon9	c.G1416C	p.S472S	CAAATCGATGCAG	.	PASS	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	37	10	13230950	13230950	+	Silent	SNP	C	C	T	rs2296222	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	39	97	0	0.410526	0	C|0.837;T|0.163	0.163	strong	.	MCM10	76	.	NM_182751	exon10	c.C1288T	p.L430L	GCGGATCTGCAGT	.	PASS	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	37	7	150649603	150649603	+	Silent	SNP	G	G	A	rs740952	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	70	156	0	0.429448	0	A|0.278;G|0.722;T|0.000	0.278	strong	.	KCNH2	157	.	NM_000238	exon6	c.C1467T	p.I489I	GACGGCGATGCGG	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	6985270	6985270	+	Missense_Mutation	SNP	C	C	T	rs11664063	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	80	156	0	0.479042	0	C|0.823;T|0.177	0.177	strong	LAMA1,NS,carcinoma,0,1	LAMA1	458	1	NM_005559	exon39	c.G5626A	p.A1876T	ACTCAGCGGCATG	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	37	1	62550230	62550230	+	Silent	SNP	C	C	T	rs17123051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	39	85	2	0.433333	0.0235294	C|0.985;T|0.015	0.015	strong	INADL_ENST00000543708,NS,carcinoma,+1,2	INADL	179	2	NM_176877	exon33	c.C4287T	p.P1429P	GTGTCCCATTGTC	.	scavenged	Atlas-SNP
CHRM4	1132	hgsc.bcm.edu	37	11	46406767	46406767	+	Silent	SNP	G	G	A	rs2067482	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	87	213	0	0.453125	0	G|0.844;T|0.003	.	strong	.	CHRM4	47	.	NM_000741	exon1	c.C1341T	p.T447T	GTTGATGGTGCTG	.	PASS	Atlas-SNP
NEIL2	252969	hgsc.bcm.edu	37	8	11640784	11640784	+	Silent	SNP	A	A	G	rs8191642	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	334	332	341	1	0.994012	0.00293255	A|0.751;G|0.249	0.249	strong	.	NEIL2	14	.	NM_001135746	exon4	c.A564G	p.P188P	TTCCCCAGTGGTC	.	PASS	Atlas-SNP
LRRC25	126364	hgsc.bcm.edu	37	19	18502835	18502835	+	Missense_Mutation	SNP	G	G	A	rs6512265	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	108	240	1	0.488688	0.00416667	G|0.273;A|0.727	0.727	strong	.	LRRC25	16	.	NM_145256	exon2	c.C880T	p.P294S	CCATTGGGGCCTG	.	PASS	Atlas-SNP
CAPN9	10753	hgsc.bcm.edu	37	1	230903350	230903350	+	Silent	SNP	T	T	C	rs3828126	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	52	99	0	0.52	0	T|0.736;C|0.264	0.264	strong	.	CAPN9	116	.	NM_006615	exon5	c.T600C	p.T200T	CTTCACTGGGGGT	.	PASS	Atlas-SNP
MANSC4	100287284	hgsc.bcm.edu	37	12	27916206	27916206	+	Missense_Mutation	SNP	G	G	A	rs11049125	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	295	131	311	1	0.444068	0.00321543	G|0.869;A|0.131	0.131	strong	.	MANSC4	9	.	NM_001146221	exon3	c.C488T	p.T163M	TTTATCGTGGTGG	.	PASS	Atlas-SNP
PJA2	9867	hgsc.bcm.edu	37	5	108714298	108714298	+	Missense_Mutation	SNP	T	T	C	rs1045706	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	205	201	0	1	0	T|0.639;C|0.361	0.361	strong	.	PJA2	53	.	NM_014819	exon4	c.A890G	p.Q297R	GTATTTTGTTCAC	.	PASS	Atlas-SNP
RPL27A	6157	hgsc.bcm.edu	37	11	8707233	8707233	+	Silent	SNP	C	C	T	rs6735	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	38	75	0	0.319328	0	C|0.830;G|0.005	.	strong	.	RPL27A	5	.	NM_000990	exon5	c.C327T	p.Y109Y	CTACTACAAAGTT	.	PASS	Atlas-SNP
MRTO4	51154	hgsc.bcm.edu	37	1	19585207	19585207	+	Silent	SNP	G	G	A	rs41367945	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	62	137	0	0.525424	0	G|1.000;|0.000	.	weak	MRTO4,colon,carcinoma,0,2	MRTO4	17	2	NM_016183	exon8	c.G603A	p.K201K	ATTCAAGGTGACC	.	PASS	Atlas-SNP
ENPP5	59084	hgsc.bcm.edu	37	6	46135884	46135884	+	Missense_Mutation	SNP	C	C	G	rs34109856	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	52	59	0	0.604651	0	C|0.961;G|0.039	0.039	strong	.	ENPP5	44	.	NM_021572	exon2	c.G116C	p.R39P	TCCCAACGGAATC	.	PASS	Atlas-SNP
ANXA6	309	hgsc.bcm.edu	37	5	150489390	150489390	+	Silent	SNP	A	A	G	rs1133202	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	27	31	0	1	0	A|0.234;G|0.766	0.766	strong	.	ANXA6	102	.	NM_001155	exon22	c.T1608C	p.P536P	TCCACTAGGTGTG	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982726	57982726	+	Silent	SNP	G	G	T	rs1993089	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	244	98	290	0	0.401639	0	G|0.609;T|0.391	0.391	strong	OR1S1,NS,carcinoma,0,1	OR1S1	139	1	NM_001004458	exon1	c.G510T	p.L170L	TGCTCTGACACAC	.	PASS	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	37	14	34269167	34269167	+	Missense_Mutation	SNP	G	G	C	rs12434716	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	35	45	0	0.603448	0	G|0.846;C|0.154	0.154	strong	.	NPAS3	266	.	NM_001164749	exon12	c.G1654C	p.A552P	CTGGGCGCGATGC	.	PASS	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	37	1	113241052	113241052	+	Silent	SNP	T	T	C	rs2306940	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	24	49	0	0.436364	0	T|0.747;G|0.002	.	strong	.	MOV10	74	.	NM_020963	exon16	c.T2460C	p.A820A	CAAAGCTCGCCTG	.	PASS	Atlas-SNP
TNIP1	10318	hgsc.bcm.edu	37	5	150436503	150436503	+	Missense_Mutation	SNP	G	G	C	rs2233290	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	44	60	0	0.556962	0	G|0.885;C|0.115	0.115	strong	TNIP1,NS,lymphoid_neoplasm,0,1	TNIP1	51	1	NM_001252385	exon6	c.C451G	p.P151A	CACGGGGCAGGGG	.	PASS	Atlas-SNP
IFT74	80173	hgsc.bcm.edu	37	9	26978259	26978259	+	Missense_Mutation	SNP	A	A	G	rs11555693	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	23	44	0	0.522727	0	A|0.823;G|0.177	0.177	strong	.	IFT74	46	.	NM_001099222	exon3	c.A254G	p.K85R	GGACGAAAGGTAC	.	PASS	Atlas-SNP
IFNE	338376	hgsc.bcm.edu	37	9	21481556	21481556	+	Missense_Mutation	SNP	T	T	G	rs1125488	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	184	86	179	0	0.467391	0	T|0.945;G|0.055	0.055	strong	.	IFNE	16	.	NM_176891	exon1	c.A138C	p.Q46H	CAAGGTTTGCAAC	.	PASS	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	37	14	21542753	21542753	+	Silent	SNP	G	G	A	rs1243472	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	16	8	22	0	0.5	0	G|0.741;A|0.259	0.259	strong	.	ARHGEF40	84	.	NM_018071	exon3	c.G864A	p.A288A	CCGGGCGTGGATG	.	PASS	Atlas-SNP
OR6M1	390261	hgsc.bcm.edu	37	11	123676413	123676413	+	Silent	SNP	G	G	A	rs7952150	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	66	0	0.464286	0	G|0.788;A|0.212	0.212	strong	.	OR6M1	60	.	NM_001005325	exon1	c.C645T	p.Y215Y	GTACACGTAGGAC	.	PASS	Atlas-SNP
OR2AG2	338755	hgsc.bcm.edu	37	11	6790028	6790028	+	Missense_Mutation	SNP	C	C	G	rs10839616	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	85	161	0	0.52795	0	C|0.737;G|0.263	0.263	strong	OR2AG2,right_upper_lobe,carcinoma,-1,1	OR2AG2	55	1	NM_001004490	exon1	c.G161C	p.R54P	TGGAGCCGGGCTT	.	PASS	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	37	15	52446200	52446200	+	Silent	SNP	G	G	A	rs6493537	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	42	54	0	0.56	0	G|0.873;A|0.127	0.127	strong	.	GNB5	28	.	NM_016194	exon4	c.C312T	p.H104H	GTTCCCGTGGCCT	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76421464	76421464	+	Silent	SNP	C	C	T	rs35422926	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	58	97	0	0.527273	0	C|0.818;T|0.182	0.182	strong	.	DNAH17	347	.	NM_173628	exon80	c.G13104A	p.P4368P	CTCTCGCGGAGGA	.	PASS	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	37	2	24149439	24149439	+	Silent	SNP	G	G	A	rs61739076	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	5	5	7	0	1	0	G|0.906;A|0.094	0.094	strong	.	ATAD2B	110	.	NM_001242338	exon1	c.C202T	p.L68L	CATCCAGAGTGAC	.	PASS	Atlas-SNP
ART3	419	hgsc.bcm.edu	37	4	77033590	77033590	+	Missense_Mutation	SNP	C	C	T	rs1128864	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	72	103	0	0.525547	0	C|0.574;T|0.426	0.426	strong	.	ART3	34	.	NM_001130016	exon12	c.C1088T	p.S363L	CATCCTCGGGCAA	.	PASS	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240981375	240981375	+	Missense_Mutation	SNP	T	T	A	rs6732185	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	108	109	0	1	0	T|0.277;A|0.723	0.723	strong	.	PRR21	53	.	NM_001080835	exon1	c.A1025T	p.K342M	AGAGACTTGGATG	.	PASS	Atlas-SNP
A4GALT	53947	hgsc.bcm.edu	37	22	43089400	43089400	+	Silent	SNP	G	G	A	rs139550090	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	55	112	0	0.495495	0	G|0.994;A|0.006	0.006	strong	A4GALT,colon,carcinoma,0,2	A4GALT	35	2	NM_017436	exon3	c.C558T	p.F186F	GCCGCCGAACTTC	.	PASS	Atlas-SNP
SLC29A3	55315	hgsc.bcm.edu	37	10	73122284	73122284	+	Silent	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	79	137	0	0.548611	0	.	.	none	SLC29A3,NS,carcinoma,+1,1	SLC29A3	51	1	NM_018344	exon6	c.G1347A	p.T449T	GGCCACGGGAGTG	.	PASS	Atlas-SNP
COL23A1	91522	hgsc.bcm.edu	37	5	177674821	177674821	+	Missense_Mutation	SNP	T	T	C	rs200475672	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	68	157	0	0.465753	0	.	.	weak	.	COL23A1	47	.	NM_173465	exon21	c.A1224G	p.I408M	CTCCACTATGAGC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179444939	179444939	+	Missense_Mutation	SNP	C	C	T	rs2303838	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	49	106	0	0.471154	0	C|0.677;T|0.323	0.323	strong	.	TTN	18412	.	NM_001267550	exon318	c.G67075A	p.V22359I	CATTGACAGGTGG	.	PASS	Atlas-SNP
LRRC16A	55604	hgsc.bcm.edu	37	6	25600968	25600968	+	Silent	SNP	G	G	A	rs10456324	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	143	143	0	0.993056	0	G|0.607;A|0.393	0.393	strong	LRRC16A_ENST00000329474,NS,carcinoma,0,1	LRRC16A	168	1	NM_001173977	exon33	c.G3546A	p.A1182A	GTGTGCGCAGAAG	.	PASS	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296167	39296167	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	7	185	1	0.0344828	0.00540541	.	.	none	KRTAP4-6,bladder,carcinoma,0,9	KRTAP4-6	46	9	NM_030976	exon1	c.T573C	p.I191I	GGTGGAAATGACA	.	scavenged	Atlas-SNP
ADH4	127	hgsc.bcm.edu	37	4	100047812	100047812	+	Silent	SNP	G	G	A	rs1126672	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	56	136	0	0.405797	0	G|0.824;A|0.176	0.176	strong	ADH4,NS,carcinoma,0,1	ADH4	35	1	NM_000670	exon8	c.C1051T	p.L351L	TCACCAGTGCATC	.	PASS	Atlas-SNP
AIFM1	9131	hgsc.bcm.edu	37	X	129283520	129283520	+	Silent	SNP	A	A	G	rs1139851	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	92	63	0	1	0	0|0.004;G|0.504	0.504	strong	.	AIFM1	75	.	NM_001130847	exon3	c.T273C	p.D91D	TTTTTCATCCTCT	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	37	2	160743040	160743040	+	Missense_Mutation	SNP	T	T	A	rs2271381	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	13	23	0	0.722222	0	T|0.798;A|0.202	0.202	strong	.	LY75	151	.	NM_002349	exon5	c.A804T	p.E268D	TTCTTTTTCTGTA	.	PASS	Atlas-SNP
STARD6	147323	hgsc.bcm.edu	37	18	51858197	51858197	+	Silent	SNP	A	A	G	rs17470798	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	49	116	0	0.418803	0	A|0.839;G|0.161	0.161	strong	.	STARD6	19	.	NM_139171	exon4	c.T300C	p.S100S	GGCAAAACTTTGT	.	PASS	Atlas-SNP
RIMBP3C	150221	hgsc.bcm.edu	37	22	21742598	21742598	+	Missense_Mutation	SNP	G	G	A	rs468931	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1053	191	1045	1	0.181387	0.000956938	G|0.250;A|0.750	0.750	weak	RIMBP3B,NS,carcinoma,0,3	RIMBP3C	6	3	NM_001128633	exon1	c.G4451A	p.R1484K	AGAAAAGGCAGTT	.	scavenged	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65676726	65676726	+	Missense_Mutation	SNP	C	C	T	rs33918653	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	18	9	16	0	0.5	0	C|0.807;T|0.193	0.193	strong	.	IGDCC4	95	.	NM_020962	exon20	c.G3374A	p.C1125Y	TTCCTGCAGGCTG	.	PASS	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	37	1	60506744	60506744	+	Silent	SNP	G	G	A	rs10493277	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	200	231	0	1	0	G|0.861;A|0.139	0.139	strong	.	C1orf87	55	.	NM_152377	exon4	c.C402T	p.S134S	CACATAGGATAAG	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52778947	52778947	+	Silent	SNP	A	A	G	rs1791631	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	53	94	0	0.53	0	A|0.685;G|0.315	0.315	strong	.	KRT84	61	.	NM_033045	exon1	c.T423C	p.T141T	GTTCACAGTCACA	.	PASS	Atlas-SNP
GPR142	350383	hgsc.bcm.edu	37	17	72368383	72368383	+	Silent	SNP	C	C	A	rs144235997	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	69	183	0	0.475862	0	C|0.994;A|0.006	0.006	strong	GPR142,bladder,carcinoma,-2,1	GPR142	74	1	NM_181790	exon4	c.C1033A	p.R345R	AGGGGCCGGAGTG	.	PASS	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	37	11	47745589	47745589	+	Missense_Mutation	SNP	T	T	C	rs34242224	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	19	65	0	0.404255	0	T|0.943;C|0.057	0.057	strong	.	FNBP4	99	.	NM_015308	exon14	c.A2455G	p.I819V	TAGCTATAGCTGA	.	PASS	Atlas-SNP
NR3C1	2908	hgsc.bcm.edu	37	5	142661490	142661490	+	Silent	SNP	A	A	G	rs6196	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	69	152	0	0.5	0	A|0.852;G|0.148	0.148	strong	.	NR3C1	124	.	NM_001024094	exon9	c.T2301C	p.N767N	ATTTCCATTTGAA	.	PASS	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	37	4	8605818	8605818	+	Silent	SNP	C	C	T	rs6852001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	46	43	0	0.630137	0	C|0.812;T|0.188	0.188	strong	CPZ,NS,carcinoma,0,1	CPZ	95	1	NM_001014447	exon4	c.C612T	p.C204C	CCGCTGCGCCCAC	.	PASS	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	37	10	43292647	43292647	+	Missense_Mutation	SNP	A	A	G	rs787795	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	40	88	0	0.430108	0	A|0.810;C|0.002	.	strong	.	BMS1	132	.	NM_014753	exon10	c.A1955G	p.K652R	ATTACAAGGAAGA	.	PASS	Atlas-SNP
PSMC4	5704	hgsc.bcm.edu	37	19	40486606	40486606	+	Silent	SNP	T	T	C	rs1127090	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	101	224	0	0.441048	0	T|0.960;C|0.040	0.040	strong	.	PSMC4	48	.	NM_006503	exon10	c.T1125C	p.I375I	TGATATTAACTCC	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790948	4790948	+	Missense_Mutation	SNP	C	C	A	rs11033800	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	44	83	0	0.564103	0	C|0.707;A|0.293	0.293	strong	.	OR51F1	60	.	NM_001004752	exon1	c.G200T	p.R67M	GATAGCCTGAAGA	.	PASS	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	37	2	219602754	219602754	+	Missense_Mutation	SNP	C	C	T	rs114586336	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	28	45	0	0.56	0	C|0.996;T|0.004	0.004	strong	.	TTLL4	96	.	NM_014640	exon3	c.C355T	p.R119C	CTATACCGCCGCT	.	PASS	Atlas-SNP
TM7SF2	7108	hgsc.bcm.edu	37	11	64880743	64880743	+	Missense_Mutation	SNP	C	C	T	rs11539360	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	17	31	0	0.447368	0	C|0.967;T|0.033	0.033	strong	.	TM7SF2	30	.	NM_003273	exon4	c.C356T	p.A119V	TGTCAGCGGGGCT	.	PASS	Atlas-SNP
PSMD3	5709	hgsc.bcm.edu	37	17	38137364	38137364	+	Silent	SNP	G	G	A	rs3087852	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	100	106	0	1	0	G|0.491;A|0.509	0.509	strong	.	PSMD3	56	.	NM_002809	exon1	c.G141A	p.S47S	CGGGTCGACGGGG	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57601929	57601929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	3	158	0	0.0188679	0	.	.	none	LRP1,caecum,carcinoma,0,1	LRP1	428	1	NM_002332	exon77	c.G11968A	p.E3990K	AAGGGCGAGAACC	.	scavenged	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917798	2917798	+	Silent	SNP	A	A	G	rs61755868	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	67	140	0	0.455782	0	A|0.975;G|0.025	0.025	strong	.	ZNF57	57	.	NM_173480	exon4	c.A1179G	p.K393K	CTATAAATGTGAA	.	PASS	Atlas-SNP
HIST1H2BA	255626	hgsc.bcm.edu	37	6	25727265	25727265	+	Silent	SNP	C	C	T	rs4712960	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	42	91	0	0.456522	0	C|0.714;T|0.286	0.286	strong	.	HIST1H2BA	25	.	NM_170610	exon1	c.C129T	p.I43I	TTACATCTACAAA	.	PASS	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18776819	18776819	+	Silent	SNP	G	G	A	rs2060363	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	22	31	0	0.423077	0	G|0.953;A|0.047	0.047	strong	.	ADAMTSL1	306	.	NM_001040272	exon19	c.G2592A	p.A864A	CATCGCGGCCGCC	.	PASS	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	37	12	129559421	129559421	+	Missense_Mutation	SNP	C	C	T	rs73159540	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	103	224	0	0.520202	0	C|0.919;T|0.081	0.081	strong	.	TMEM132D	299	.	NM_133448	exon9	c.G2299A	p.V767I	CCTTGACCAGGGT	.	PASS	Atlas-SNP
LNX1	84708	hgsc.bcm.edu	37	4	54373579	54373579	+	Missense_Mutation	SNP	G	G	A	rs147992678	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	88	164	0	0.483516	0	G|0.998;A|0.002	0.002	strong	.	LNX1	139	.	NM_001126328	exon4	c.C680T	p.A227V	CTCAAAGCTCGAT	.	PASS	Atlas-SNP
FER	2241	hgsc.bcm.edu	37	5	108380419	108380419	+	Silent	SNP	T	T	C	rs919771	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	330	139	330	0	0.421212	0	T|0.895;C|0.105	0.105	strong	.	FER	100	.	NM_005246	exon15	c.T1752C	p.D584D	AAAGGATAAAACT	.	PASS	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	37	1	117156603	117156603	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	89	161	0	0.511494	0	.	.	none	.	IGSF3	294	.	NM_001542	exon4	c.T616A	p.S206T	TGCTGGAGTGAAG	.	PASS	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	37	9	77416972	77416972	+	Silent	SNP	C	C	T	rs11144089	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	88	180	0	0.483516	0	C|0.911;T|0.089	0.089	strong	.	TRPM6	377	.	NM_017662	exon16	c.G1851A	p.L617L	TTTCATCAGCACA	.	PASS	Atlas-SNP
PCSK9	255738	hgsc.bcm.edu	37	1	55505651	55505651	+	Silent	SNP	C	C	T	rs28385701	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	68	73	0	0.607143	0	C|0.993;T|0.007	0.007	strong	.	PCSK9	76	.	NM_174936	exon1	c.C141T	p.S47S	GCGTTCCGAGGAG	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	37	1	232574921	232574921	+	Missense_Mutation	SNP	T	T	C	rs2275307	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	44	79	0	0.556962	0	T|0.688;C|0.311	0.311	strong	.	SIPA1L2	218	.	NM_020808	exon13	c.A3964G	p.T1322A	AGATGGTGGACGC	.	PASS	Atlas-SNP
NGEF	25791	hgsc.bcm.edu	37	2	233750074	233750074	+	Silent	SNP	C	C	T	rs2292725	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	41	88	0	0.482353	0	C|0.798;T|0.202	0.202	strong	.	NGEF	198	.	NM_019850	exon10	c.G1353A	p.V451V	TGCCTTCACCACC	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87489317	87489317	+	Missense_Mutation	SNP	T	T	C	rs3812645	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	36	117	0	0.378947	0	T|0.964;C|0.036	0.036	strong	GRID1,NS,carcinoma,0,1	GRID1	204	1	NM_017551	exon9	c.A1288G	p.M430V	TGCCCATGGGCCT	.	PASS	Atlas-SNP
CCDC93	54520	hgsc.bcm.edu	37	2	118771566	118771566	+	Silent	SNP	C	C	A	rs11545372	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	49	73	0	0.411765	0	C|0.673;A|0.327	0.327	strong	CCDC93,NS,carcinoma,0,1	CCDC93	70	1	NM_019044	exon1	c.G6T	p.G2G	GGGCAACCCCATG	.	PASS	Atlas-SNP
CD8B	926	hgsc.bcm.edu	37	2	87073852	87073852	+	Missense_Mutation	SNP	C	C	T	rs2228022	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	414	218	389	0	0.52657	0	C|0.829;T|0.171	0.171	strong	.	CD8B	37	.	NM_004931	exon4	c.G538A	p.V180I	CCAGGACGCCAGC	.	PASS	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	37	5	149323906	149323906	+	Silent	SNP	T	T	G	rs2277925	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	46	125	0	0.455446	0	T|0.786;G|0.214	0.214	strong	PDE6A,NS,carcinoma,0,1	PDE6A	98	1	NM_000440	exon1	c.A331C	p.R111R	AAAGCCTGGTGGC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036959	33036959	+	Silent	SNP	G	G	A	rs2308929	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	52	91	0	0.541667	0	G|0.695;A|0.305	0.305	strong	.	HLA-DPA1	20	.	NM_033554	exon3	c.C465T	p.N155N	CTCCCCGTTGCAC	.	PASS	Atlas-SNP
ZPLD1	131368	hgsc.bcm.edu	37	3	102181131	102181131	+	Missense_Mutation	SNP	A	A	G	rs12054046	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	81	82	0	0.987805	0	A|0.884;G|0.116	0.116	strong	.	ZPLD1	82	.	NM_175056	exon6	c.A637G	p.T213A	GATTCAACCTACA	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214820494	214820494	+	Silent	SNP	G	G	A	rs3790648	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	62	130	0	0.442857	0	G|0.910;A|0.090	0.090	strong	CENPF,bladder,carcinoma,+1,1	CENPF	321	1	NM_016343	exon13	c.G7581A	p.L2527L	TAGACTGAAAAAT	.	PASS	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	37	14	76259376	76259376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	64	118	0	0.516129	0	.	.	none	.	TTLL5	102	.	NM_015072	exon27	c.G3104A	p.R1035Q	TTCAGCGGCTAGC	.	PASS	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	37	8	36788479	36788479	+	Missense_Mutation	SNP	A	A	G	rs16885577	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	32	58	0	0.426667	0	A|0.799;G|0.201	0.201	strong	.	KCNU1	359	.	NM_001031836	exon25	c.A2747G	p.N916S	TCTACAATTATCA	.	PASS	Atlas-SNP
ABHD10	55347	hgsc.bcm.edu	37	3	111710398	111710398	+	Missense_Mutation	SNP	A	A	G	rs17429033	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	356	173	342	0	0.485955	0	A|0.961;G|0.039	0.039	strong	.	ABHD10	20	.	NM_018394	exon5	c.A751G	p.I251V	GATGACATTGTAC	.	PASS	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	37	6	79688366	79688366	+	Silent	SNP	T	T	C	rs12209235	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	128	164	0	1	0	T|0.952;C|0.048	0.048	strong	.	PHIP	177	.	NM_017934	exon24	c.A2832G	p.T944T	AATCCATGTTGAT	.	PASS	Atlas-SNP
HSP90AB1	3326	hgsc.bcm.edu	37	6	44221316	44221316	+	Missense_Mutation	SNP	G	G	A	rs76772157	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	34	198	0	0.151111	0	G|0.986;A|0.014	0.014	strong	HSP90AB1,extremity,malignant_melanoma,0,1	HSP90AB1	83	1	NM_007355	exon12	c.G2156A	p.R719H	CGTCTCGCATGGA	.	PASS	Atlas-SNP
PGLYRP2	114770	hgsc.bcm.edu	37	19	15587103	15587103	+	Silent	SNP	C	C	T	rs35973013	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	86	146	0	0.554839	0	C|0.981;T|0.019	0.019	strong	.	PGLYRP2	116	.	NM_052890	exon2	c.G378A	p.A126A	CAGCCCCGCCAGC	.	PASS	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	37	7	107849908	107849908	+	Silent	SNP	G	G	A	rs1269621	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	62	150	0	0.442857	0	G|0.434;A|0.566	0.566	strong	.	NRCAM	267	.	NM_001037132	exon9	c.C1032T	p.N344N	TAATGCGTTTTTT	.	PASS	Atlas-SNP
ODF3B	440836	hgsc.bcm.edu	37	22	50969647	50969647	+	Missense_Mutation	SNP	C	C	G	rs139023197	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	60	104	0	0.526316	0	C|0.969;G|0.031	0.031	strong	.	ODF3B	6	.	NM_001014440	exon4	c.G391C	p.G131R	GGACACCCCAGTT	.	PASS	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	37	19	44223412	44223412	+	Silent	SNP	C	C	T	rs34471331	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	19	30	0	0.513514	0	C|0.924;T|0.076	0.076	strong	.	IRGC	67	.	NM_019612	exon2	c.C702T	p.H234H	GGAGCACGACCTG	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4933907	4933907	+	Silent	SNP	T	T	C	rs17137389	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	64	126	0	0.453901	0	T|0.902;C|0.098	0.098	strong	.	PPL	168	.	NM_002705	exon22	c.A4749G	p.Q1583Q	TTCCGATTGGAGC	.	PASS	Atlas-SNP
ZNF17	7565	hgsc.bcm.edu	37	19	57932027	57932027	+	Silent	SNP	C	C	T	rs2158009	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	54	49	0	1	0	C|0.820;T|0.180	0.180	strong	.	ZNF17	49	.	NM_006959	exon3	c.C1167T	p.N389N	ATGCAACGAATGT	.	PASS	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42772038	42772038	+	Missense_Mutation	SNP	A	A	T	rs12495805	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	60	135	0	0.454545	0	A|0.792;T|0.208	0.208	strong	.	CCDC13	71	.	NM_144719	exon13	c.T1639A	p.S547T	TCTCTGACACTTG	.	PASS	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	37	11	129746707	129746707	+	Silent	SNP	G	G	T	rs2229650	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	72	162	1	0.510638	0.00617284	T|0.203;G|0.797;A|0.000	0.203	strong	NFRKB,right_upper_lobe,carcinoma,-1,1	NFRKB	101	1	NM_006165	exon15	c.C1731A	p.G577G	AAACACGCCCTTC	.	scavenged	Atlas-SNP
PHF21A	51317	hgsc.bcm.edu	37	11	45987091	45987091	+	Silent	SNP	A	A	T	rs151169176	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	230	128	186	0	0.556522	0	A|0.994;T|0.006	0.006	strong	.	PHF21A	107	.	NM_016621	exon9	c.T771A	p.A257A	CTGAGGAGCTGCG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092951	1092951	+	Silent	SNP	T	T	C	rs187978467	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	19	52	5	0.246753	0.0961538	.	.	weak	MUC2_ENST00000441003,NS,carcinoma,+1,2	MUC2	614	2	NM_002457	exon30	c.T4770C	p.T1590T	CACCACTACGGTG	.	scavenged	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	37	2	24431184	24431184	+	Missense_Mutation	SNP	C	C	T	rs2303291	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	116	83	0	1	0	C|0.829;T|0.171	0.171	strong	.	ITSN2	224	.	NM_006277	exon37	c.G4600A	p.A1534T	CCCAGGCGGTCCT	.	PASS	Atlas-SNP
XCL2	6846	hgsc.bcm.edu	37	1	168511284	168511284	+	Silent	SNP	T	T	C	rs4282797	bycluster;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	105	245	0	0.963303	0	T|0.709;C|0.291	0.291	strong	XCL2,colon,carcinoma,-2,1	XCL2	18	1	NM_003175	exon2	c.A123G	p.P41P	GCTAACTGGCAGT	.	PASS	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	37	17	33513337	33513337	+	Missense_Mutation	SNP	T	T	A	rs11654824	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	52	102	0	0.485981	0	T|0.948;A|0.052	0.052	strong	.	UNC45B	133	.	NM_173167	exon20	c.T2555A	p.I852N	TGGAGATCCTCCA	.	PASS	Atlas-SNP
UMOD	7369	hgsc.bcm.edu	37	16	20352532	20352532	+	Silent	SNP	G	G	A	rs141800038	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	37	73	0	0.560606	0	G|0.994;A|0.006	0.006	strong	.	UMOD	128	.	NM_003361	exon7	c.C1458T	p.Y486Y	GCCCACGTAGAGA	.	PASS	Atlas-SNP
SPATC1L	84221	hgsc.bcm.edu	37	21	47581835	47581835	+	Missense_Mutation	SNP	C	C	T	rs113710653	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	22	14	28	0	0.636364	0	C|0.942;T|0.058	0.058	strong	.	.	.	.	NM_001142854	exon4	c.G691A	p.E231K	CCTGCTCGATCTT	.	PASS	Atlas-SNP
PABPC1L	80336	hgsc.bcm.edu	37	20	43547677	43547677	+	Missense_Mutation	SNP	T	T	G	rs2075960	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	67	127	0	0.482014	0	T|0.781;G|0.219	0.219	strong	.	PABPC1L	59	.	NM_001124756	exon4	c.T634G	p.S212A	CTCTTCTCCCAGT	.	PASS	Atlas-SNP
TSEN2	80746	hgsc.bcm.edu	37	3	12538040	12538040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	50	118	0	0.413223	0	.	.	none	.	TSEN2	46	.	NM_001145394	exon4	c.A295G	p.I99V	CCTATCATCACAT	.	PASS	Atlas-SNP
BMP2K	55589	hgsc.bcm.edu	37	4	79832488	79832488	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	306	155	289	1	0.506536	0.00346021	.	.	none	.	BMP2K	169	.	NM_198892	exon16	c.A2787G	p.V929V	AAGTGTAGATGTA	.	PASS	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	37	7	131191461	131191461	+	Silent	SNP	A	A	G	rs3212300	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	83	128	0	0.488235	0	A|0.940;G|0.060	0.060	strong	.	PODXL	53	.	NM_001018111	exon6	c.T1126C	p.L376L	AGATCAATTTCTC	.	PASS	Atlas-SNP
SMARCAD1	56916	hgsc.bcm.edu	37	4	95186055	95186055	+	Silent	SNP	A	A	G	rs2306802	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	198	137	1	1	0.00729927	A|0.691;G|0.309	0.309	strong	SMARCAD1,NS,carcinoma,0,1	SMARCAD1	97	1	NM_001128429	exon10	c.A1479G	p.Q493Q	AAACCAAAGGTAA	.	PASS	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	37	17	28417576	28417576	+	Missense_Mutation	SNP	G	G	C	rs35724168	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	40	114	0	0.465116	0	G|0.984;C|0.016	0.016	strong	.	EFCAB5	122	.	NM_198529	exon20	c.G3821C	p.R1274T	AAAATAGGATGTT	.	PASS	Atlas-SNP
MOGAT1	116255	hgsc.bcm.edu	37	2	223536541	223536541	+	Missense_Mutation	SNP	G	G	A	rs35959734	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	69	131	0	0.475862	0	G|0.939;A|0.061	0.061	strong	.	MOGAT1	47	.	NM_058165	exon1	c.G37A	p.A13T	CAGCTGGCGCGGC	.	PASS	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	37	12	113307744	113307744	+	Silent	SNP	C	C	T	rs149945171	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	2	108	0	0.0148148	0	C|0.999;T|0.001	0.001	strong	RPH3A,NS,carcinoma,0,1	RPH3A	98	1	NM_001143854	exon10	c.C696T	p.P232P	GCCTCCCGTGCGC	.	scavenged	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	37	14	24806902	24806902	+	Missense_Mutation	SNP	G	G	A	rs34106261	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	74	143	0	0.556391	0	G|0.936;A|0.064	0.064	strong	.	RIPK3	43	.	NM_006871	exon7	c.C899T	p.T300M	CTCACCGTGGAGA	.	PASS	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106999822	106999822	+	Missense_Mutation	SNP	G	G	A	rs2297970	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	60	154	0	0.41958	0	G|0.768;A|0.232	0.232	strong	AIM1,NS,carcinoma,0,1	AIM1	161	1	NM_001624	exon12	c.G4184A	p.C1395Y	AAAATTGTAAGAT	.	PASS	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	37	17	5280440	5280440	+	Silent	SNP	T	T	C	rs3026101	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	29	49	0	0.467742	0	T|0.635;C|0.365	0.365	strong	RABEP1,NS,haematopoietic_neoplasm,+1,1	RABEP1	59	1	NM_004703	exon14	c.T2055C	p.R685R	ATACCGTGAGGAC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9066259	9066259	+	Missense_Mutation	SNP	T	T	C	rs17000770	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	82	156	0	0.525641	0	T|0.643;C|0.357	0.357	strong	MUC16_ENST00000397910,NS,carcinoma,0,3	MUC16	4315	3	NM_024690	exon3	c.A21187G	p.T7063A	TCTGAGTCAAAGT	.	PASS	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	37	9	35957355	35957355	+	Silent	SNP	G	G	A	rs2233568	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	60	147	0	0.46875	0	G|0.634;A|0.366	0.366	strong	OR2S2,NS,carcinoma,0,1	OR2S2	46	1	NM_019897	exon1	c.C741T	p.T247T	CACCACGGTGAGG	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150901209	150901209	+	Silent	SNP	G	G	T	rs142359154	bycluster;by1000genomes;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	44	53	0	0.494382	0	G|0.999;A|0.001	.	alt	.	FAT2	465	.	NM_001447	exon18	c.C10945A	p.R3649R	GGTTCCGCCAGTG	.	PASS	Atlas-SNP
CYP2W1	54905	hgsc.bcm.edu	37	7	1023013	1023013	+	Silent	SNP	C	C	T	rs2272375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	11	8	4	0	0.727273	0	C|0.645;T|0.355	0.355	strong	.	CYP2W1	28	.	NM_017781	exon1	c.C166T	p.L56L	CGGTCCCTGATGG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093778	1093778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	4	81	0	0.045977	0	.	.	none	.	MUC2	614	.	NM_002457	exon31	c.C5585G	p.S1862C	CCACCTCTTCCCC	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790758	4790758	+	Silent	SNP	G	G	A	rs11033796	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	62	108	0	0.558559	0	G|0.690;A|0.310	0.310	strong	.	OR51F1	60	.	NM_001004752	exon1	c.C390T	p.D130D	CAGAGGGTCACAG	.	PASS	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	37	3	194373833	194373833	+	Silent	SNP	G	G	A	rs66771418	bycluster;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	247	125	235	0	0.506073	0	CA|1.000;|0.000	.	alt	.	LSG1	38	.	NM_018385	exon8	c.C798T	p.T266T	AAACTTGGTTGTG	.	PASS	Atlas-SNP
SLC39A5	283375	hgsc.bcm.edu	37	12	56630444	56630444	+	Missense_Mutation	SNP	G	G	C	rs74812296	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	43	79	0	0.462366	0	G|0.987;C|0.013	0.013	strong	.	SLC39A5	52	.	NM_173596	exon10	c.G1121C	p.S374T	GCCACAGTCATGG	.	PASS	Atlas-SNP
MAVS	57506	hgsc.bcm.edu	37	20	3843027	3843027	+	Missense_Mutation	SNP	C	C	A	rs7262903	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	68	154	0	0.485714	0	C|0.840;A|0.160	0.160	strong	.	MAVS	34	.	NM_020746	exon5	c.C592A	p.Q198K	CAGGAGCAGGACA	.	PASS	Atlas-SNP
BPIFB3	359710	hgsc.bcm.edu	37	20	31656632	31656632	+	Missense_Mutation	SNP	C	C	G	rs6057717	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	39	70	0	0.4875	0	C|0.625;G|0.375	0.375	strong	C20orf185,NS,carcinoma,0,1	.	.	1	NM_182658	exon10	c.C1002G	p.H334Q	CCTGCACCAGCAA	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64686125	64686125	+	Silent	SNP	G	G	T	rs35648226	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	41	110	0	0.471264	0	G|0.752;T|0.248	0.248	strong	.	SYNE2	577	.	NM_182914	exon110	c.G19857T	p.L6619L	GAGACTGCAGGTG	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134351655	134351655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	50	78	0	0.531915	0	.	.	none	.	PRRC2B	266	.	NM_013318	exon15	c.G4139A	p.S1380N	CCGAAAGCAGCGA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280691	152280691	+	Missense_Mutation	SNP	A	A	T	rs117945779		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	475	35	304	1	0.0736842	0.00328947	.	.	weak	FLG,NS,malignant_melanoma,+1,1	FLG	900	1	NM_002016	exon3	c.T6671A	p.L2224Q	CCCACCAGTGAGT	.	scavenged	Atlas-SNP
OR8D1	283159	hgsc.bcm.edu	37	11	124180477	124180477	+	Silent	SNP	G	G	A	rs6590057	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	50	81	0	0.520833	0	G|0.939;A|0.061	0.061	strong	.	OR8D1	53	.	NM_001002917	exon1	c.C186T	p.F62F	GCTGAGGAAATAG	.	PASS	Atlas-SNP
MVK	4598	hgsc.bcm.edu	37	12	110019233	110019233	+	Silent	SNP	G	G	A	rs34368092	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	53	96	0	0.5	0	G|0.950;A|0.050	0.050	strong	MVK,colon,carcinoma,+1,1	MVK	42	1	NM_000431	exon5	c.G405A	p.S135S	GTGGTCGGAGCTG	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43923703	43923703	+	Silent	SNP	C	C	T	rs12185235	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	83	109	0	1	0	C|0.853;T|0.147	0.147	strong	.	.	.	.	NM_175882	exon1	c.C1431T	p.T477T	CTGCACCGTGGCC	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4716811	4716811	+	Silent	SNP	A	A	C	rs2306877	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	71	175	0	0.467105	0	A|0.703;C|0.297	0.297	strong	.	ITPR1	659	.	NM_001099952	exon23	c.A2658C	p.L886L	CCTTCTACGATTA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152285099	152285099	+	Missense_Mutation	SNP	C	C	T	rs74129461	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	110	204	0	0.486726	0	C|0.815;T|0.185	0.185	strong	.	FLG	900	.	NM_002016	exon3	c.G2263A	p.E755K	AGTCTTCTGAATG	.	PASS	Atlas-SNP
AZU1	566	hgsc.bcm.edu	37	19	829568	829568	+	Silent	SNP	C	C	T	rs12460890	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	25	45	0	0.657895	0	C|0.714;T|0.286	0.286	strong	AZU1,NS,carcinoma,0,1	AZU1	31	1	NM_001700	exon3	c.C222T	p.P74P	GAACCCCGGGGTT	.	PASS	Atlas-SNP
OR4K13	390433	hgsc.bcm.edu	37	14	20502120	20502120	+	Silent	SNP	C	C	T	rs17277032	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	43	69	0	0.641791	0	C|0.636;T|0.364	0.364	strong	.	OR4K13	68	.	NM_001004714	exon1	c.G798A	p.S266S	ATCTACCGAGTAT	.	PASS	Atlas-SNP
IRF3	3661	hgsc.bcm.edu	37	19	50162909	50162909	+	Missense_Mutation	SNP	C	C	G	rs7251	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	86	72	0	1	0	C|0.546;G|0.454	0.454	strong	IRF3,NS,carcinoma,0,1	IRF3	27	1	NM_001197122	exon8	c.G1296C	p.E432D	GCTCAGCTCTCCC	.	PASS	Atlas-SNP
PIGH	5283	hgsc.bcm.edu	37	14	68060574	68060574	+	Silent	SNP	G	G	A	rs45474396	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	69	126	0	0.627273	0	G|0.905;A|0.095	0.095	strong	.	PIGH	13	.	NM_004569	exon2	c.C276T	p.I92I	ATCAATGATTAAC	.	PASS	Atlas-SNP
DNAH12	201625	hgsc.bcm.edu	37	3	57494915	57494915	+	Missense_Mutation	SNP	G	G	T	rs115576589	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	376	186	443	0	0.494681	0	G|0.990;T|0.010	0.010	strong	.	DNAH12	182	.	NM_198564	exon6	c.C494A	p.P165Q	TTAACTGGTGGTT	.	PASS	Atlas-SNP
ARL17B	100506084	hgsc.bcm.edu	37	17	44430254	44430254	+	Missense_Mutation	SNP	G	G	C	rs35595570	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	936	188	470	1	0.200855	0.00212766	G|0.905;C|0.095	0.095	strong	ARL17B,NS,other,0,1	ARL17B	3	1	NM_001039083	exon3	c.C191G	p.A64G	CAGACAGCGAAGG	.	scavenged	Atlas-SNP
KLHL12	59349	hgsc.bcm.edu	37	1	202888947	202888947	+	Silent	SNP	T	T	C	rs3182429	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	77	158	0	0.409574	0	T|0.778;C|0.222	0.222	strong	.	KLHL12	50	.	NM_021633	exon3	c.A285G	p.T95T	ATGTACTGTTTCT	.	PASS	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	37	12	102069077	102069077	+	Silent	SNP	A	A	G	rs764291	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	70	162	0	0.534351	0	A|0.807;G|0.193	0.193	strong	.	MYBPC1	235	.	NM_206819	exon26	c.A2817G	p.P939P	CCGTCCAGGTCCA	.	PASS	Atlas-SNP
KIAA1609	57707	hgsc.bcm.edu	37	16	84516204	84516204	+	Silent	SNP	G	G	A	rs62640938	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	84	149	0	0.525	0	G|0.981;A|0.019	0.019	strong	.	KIAA1609	39	.	NM_020947	exon6	c.C1071T	p.N357N	CAGTCCGTTCGGG	.	PASS	Atlas-SNP
FAM228A	653140	hgsc.bcm.edu	37	2	24413298	24413298	+	Missense_Mutation	SNP	A	A	G	rs2288073	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	215	217	0	0.99537	0	A|0.776;G|0.224	0.224	strong	C2orf84,NS,carcinoma,+1,1	.	.	1	NM_001040710	exon6	c.A419G	p.Y140C	TCATCTATGCAGA	.	PASS	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	37	8	105368408	105368408	+	Silent	SNP	A	A	G	rs4734780	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	35	58	0	0.514706	0	A|0.929;G|0.071	0.071	strong	.	.	.	.	NM_030788	exon4	c.A1395G	p.A465A	CATGGCAAGTGCA	.	PASS	Atlas-SNP
ALPP	250	hgsc.bcm.edu	37	2	233245139	233245139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	402	5	491	1	0.0124378	0.00203666	.	.	none	ALPP,colon,carcinoma,-2,1	ALPP	53	1	NM_001632	exon7	c.T802C	p.Y268H	GCCCGGTATGTGT	.	scavenged	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	37	1	6190315	6190315	+	Silent	SNP	C	C	T	rs17029184	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	56	111	0	0.444444	0	C|0.905;T|0.095	0.095	strong	.	CHD5	267	.	NM_015557	exon22	c.G3336A	p.A1112A	AGTGTCCGCCGTG	.	PASS	Atlas-SNP
DOK2	9046	hgsc.bcm.edu	37	8	21766900	21766900	+	Silent	SNP	G	G	A	rs17853066	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	66	106	0	0.481752	0	G|0.869;A|0.131	0.131	strong	.	DOK2	51	.	NM_003974	exon5	c.C1161T	p.A387A	CTGCCCGGCTGGC	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57569478	57569478	+	Silent	SNP	C	C	T	rs12814239	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	30	95	0	0.384615	0	C|0.956;T|0.044	0.044	strong	.	LRP1	428	.	NM_002332	exon23	c.C3783T	p.C1261C	GAGCTGCCGCAGC	.	PASS	Atlas-SNP
INPP1	3628	hgsc.bcm.edu	37	2	191231503	191231503	+	Silent	SNP	G	G	A	rs10931450	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	33	110	0	0.392857	0	G|0.733;A|0.267	0.267	strong	.	INPP1	29	.	NM_002194	exon4	c.G348A	p.V116V	CAAGGTGGCATCT	.	PASS	Atlas-SNP
HHLA2	11148	hgsc.bcm.edu	37	3	108095365	108095365	+	Silent	SNP	G	G	A	rs2124736	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	36	53	0	0.514286	0	G|0.881;A|0.119	0.119	strong	.	HHLA2	95	.	NM_007072	exon9	c.G1185A	p.E395E	TGGTGAGCGCTGT	.	PASS	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	37	1	7723957	7723957	+	Silent	SNP	G	G	A	rs12128526	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	66	57	0	1	0	G|0.581;A|0.419	0.419	strong	.	CAMTA1	226	.	NM_015215	exon9	c.G1350A	p.S450S	CAGCTCGGAGAGC	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39578424	39578424	+	Missense_Mutation	SNP	G	G	T	rs2071607	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	51	101	0	0.455357	0	G|0.854;T|0.146	0.146	strong	.	KRT37	61	.	NM_003770	exon5	c.C917A	p.A306D	GACATGGCCTGCA	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17084066	17084066	+	Missense_Mutation	SNP	G	G	A	rs201206414		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1252	81	1131	2	0.0646965	0.00176835	G|0.999;A|0.001	0.001	weak	Q13209_HUMAN,NS,carcinoma,0,1	.	.	1	NM_001271733	exon14	c.C1855T	p.R619W	TCTCCCGCACATG	.	scavenged	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	37	17	21318912	21318912	+	Silent	SNP	C	C	A	rs35011501	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	258	41	231	0	0.158915	0	C|0.733;A|0.267	0.267	strong	.	.	.	.	NM_001194958	exon3	c.C258A	p.I86I	GCTCATCTTCTCG	.	PASS	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194349178	194349178	+	Silent	SNP	C	C	T	rs1563970	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	180	188	0	0.994475	0	C|0.674;T|0.326	0.326	strong	TMEM44_ENST00000392432,colon,carcinoma,0,2	TMEM44	42	2	NM_138399	exon2	c.G198A	p.A66A	GCAGCACGCAGCA	.	PASS	Atlas-SNP
SDC3	9672	hgsc.bcm.edu	37	1	31347399	31347399	+	Missense_Mutation	SNP	C	C	T	rs4949184	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	34	74	0	0.43038	0	C|0.795;T|0.205	0.205	strong	.	SDC3	45	.	NM_014654	exon4	c.G907A	p.D303N	GCTCATCCCGGAT	.	PASS	Atlas-SNP
KRT71	112802	hgsc.bcm.edu	37	12	52946498	52946498	+	Missense_Mutation	SNP	C	C	T	rs665470	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	78	181	0	0.419355	0	C|0.774;N|0.000	.	strong	.	KRT71	70	.	NM_033448	exon1	c.G364A	p.E122K	GGATCTCGGGGTC	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12409327	12409327	+	Missense_Mutation	SNP	C	C	T	rs17165910	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	132	258	0	0.507692	0	C|0.841;T|0.159	0.159	strong	.	VWDE	123	.	NM_001135924	exon12	c.G2605A	p.E869K	TCCCCTCCTCCAC	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	37	13	77738664	77738664	+	Silent	SNP	A	A	G	rs2274547	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	35	125	0	0.368421	0	A|0.832;G|0.168	0.168	strong	.	MYCBP2	1029	.	NM_015057	exon43	c.T6472C	p.L2158L	TTTCCAATTGGAT	.	PASS	Atlas-SNP
RBM33	155435	hgsc.bcm.edu	37	7	155530954	155530954	+	Silent	SNP	T	T	C	rs2178428	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	88	140	0	0.556962	0	T|0.707;C|0.293	0.293	strong	.	RBM33	157	.	NM_053043	exon11	c.T1594C	p.L532L	CCAGCCTTGCAGC	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79028726	79028726	+	Missense_Mutation	SNP	A	A	G	rs13158477	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	75	155	0	0.477707	0	A|0.895;G|0.105	0.105	strong	.	CMYA5	643	.	NM_153610	exon2	c.A4138G	p.I1380V	TCTCTTATCACTC	.	PASS	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	37	3	58112488	58112488	+	Silent	SNP	C	C	T	rs2362904	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	57	129	0	0.522936	0	C|0.489;T|0.511	0.511	strong	.	FLNB	430	.	NM_001457	exon24	c.C4221T	p.P1407P	CATCCCCGGTGAG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306971	1306971	+	Missense_Mutation	SNP	A	A	G	rs72775466	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	538	183	310	0	0.340149	0	.	.	strong	TPSD1,NS,NS,0,1	TPSD1	47	1	NM_012217	exon3	c.A428G	p.H143R	CCAGCCACATCCA	.	PASS	Atlas-SNP
OR10G9	219870	hgsc.bcm.edu	37	11	123893757	123893757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	387	29	308	0	0.0749354	0	.	.	none	OR10G9,NS,carcinoma,0,2	OR10G9	80	2	NM_001001953	exon1	c.C38T	p.T13M	TCCTCACGGGCCT	.	scavenged	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	37	4	95561459	95561459	+	Missense_Mutation	SNP	A	A	G	rs7690296	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	70	91	0	1	0	A|0.655;G|0.345	0.345	strong	PDLIM5,colon,carcinoma,-2,1	PDLIM5	76	1	NM_001256426	exon13	c.A1228G	p.T410A	AGCGCTACTTACT	.	PASS	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	37	18	55816791	55816791	+	Silent	SNP	G	G	A	rs4149601	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	56	124	0	0.459016	0	G|0.696;A|0.304	0.304	strong	.	NEDD4L	126	.	NM_001144968	exon1	c.G24A	p.Q8Q	TGAGCAGGTAACA	.	PASS	Atlas-SNP
CDT1	81620	hgsc.bcm.edu	37	16	88874632	88874632	+	Silent	SNP	C	C	G	rs572275	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	127	118	0	0.984496	0	C|0.482;G|0.518	0.518	strong	.	CDT1	30	.	NM_030928	exon10	c.C1587G	p.L529L	GGACCTCGCCCAC	.	PASS	Atlas-SNP
OCA2	4948	hgsc.bcm.edu	37	15	28202804	28202804	+	Missense_Mutation	SNP	G	G	A	rs374415755	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	27	29	0	0.490909	0	.	.	weak	OCA2,caecum,carcinoma,0,1	OCA2	173	1	NM_000275	exon16	c.C1714T	p.R572C	GGCGGCGCACAGC	.	PASS	Atlas-SNP
CDK11A	728642	hgsc.bcm.edu	37	1	1636044	1636044	+	Silent	SNP	G	G	A	rs61745144	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	577	218	349	0	0.377816	0	G|0.014;A|0.986	0.986	weak	CDC2L2,NS,carcinoma,0,1	CDK11A	38	1	NM_024011	exon14	c.C1509T	p.Y503Y	CTCCACGTAGTTC	.	PASS	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32135186	32135186	+	Missense_Mutation	SNP	T	T	A	rs3759302	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	20	66	0	0.444444	0	T|0.847;A|0.153	0.153	strong	.	.	.	.	NM_018169	exon4	c.T1297A	p.S433T	AATACTTCTTATA	.	PASS	Atlas-SNP
VWA5B1	127731	hgsc.bcm.edu	37	1	20645086	20645086	+	Missense_Mutation	SNP	T	T	A	rs35480773	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	25	42	0	0.5	0	T|0.963;A|0.037	0.037	strong	.	VWA5B1	44	.	NM_001039500	exon6	c.T713A	p.V238E	CAGGGGTGGAGAG	.	PASS	Atlas-SNP
OR2T33	391195	hgsc.bcm.edu	37	1	248437002	248437002	+	Missense_Mutation	SNP	C	C	T	rs146010336	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	709	89	669	11	0.125529	0.0164425	C|0.992;T|0.008	0.008	strong	OR2T33,NS,carcinoma,+2,1	OR2T33	133	1	NM_001004695	exon1	c.G115A	p.G39S	AATTGCCAAACAG	.	scavenged	Atlas-SNP
WNT6	7475	hgsc.bcm.edu	37	2	219736472	219736472	+	Silent	SNP	G	G	A	rs13417214	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	93	143	0	0.513812	0	G|0.979;A|0.021	0.021	strong	WNT6_ENST00000233948,NS,carcinoma,0,1	WNT6	21	1	NM_006522	exon3	c.G567A	p.A189A	GGACGCGCGGCAC	.	PASS	Atlas-SNP
DUSP4	1846	hgsc.bcm.edu	37	8	29207692	29207692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	17	9	12	0	0.529412	0	.	.	none	.	DUSP4	58	.	NM_001394	exon1	c.G104A	p.G35D	AGGGTGCCGTGGC	.	PASS	Atlas-SNP
TTC24	164118	hgsc.bcm.edu	37	1	156551248	156551248	+	Missense_Mutation	SNP	G	G	A	rs192869620	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	67	120	0	0.54918	0	G|0.994;A|0.006	0.006	strong	TTC24,NS,carcinoma,0,2	TTC24	46	2	NM_001105669	exon2	c.G92A	p.R31Q	GGCTGCGGCAAGA	.	PASS	Atlas-SNP
ELF1	1997	hgsc.bcm.edu	37	13	41517985	41517985	+	Silent	SNP	A	A	G	rs3764056	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	256	127	244	0	0.496094	0	A|0.521;G|0.479	0.479	strong	.	ELF1	65	.	NM_172373	exon6	c.T606C	p.D202D	CTTTCCATCTTTG	.	PASS	Atlas-SNP
PSAPL1	768239	hgsc.bcm.edu	37	4	7436073	7436073	+	Silent	SNP	C	C	T	rs61740031	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	91	127	0	0.938144	0	C|0.870;T|0.130	0.130	strong	.	PSAPL1	51	.	NM_001085382	exon1	c.G534A	p.A178A	TTCAGGCGCCTGG	.	PASS	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	37	7	105658460	105658460	+	Missense_Mutation	SNP	C	C	G	rs73195662	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	20	56	0	0.377358	0	C|0.945;G|0.055	0.055	strong	.	CDHR3	153	.	NM_152750	exon12	c.C1595G	p.T532S	AAACAACCCCCAT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412542	105412542	+	Silent	SNP	A	A	G	rs12433815	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	78	200	1	0.987342	0.005	A|0.668;G|0.332	0.332	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T9246C	p.D3082D	CTTGACATCTATC	.	PASS	Atlas-SNP
PTP4A3	11156	hgsc.bcm.edu	37	8	142441117	142441117	+	Silent	SNP	G	G	A	rs145258592	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	45	64	0	0.494505	0	G|0.999;A|0.001	0.001	strong	.	PTP4A3	19	.	NM_032611	exon5	c.G495A	p.T165T	ACACACGCACAAG	.	PASS	Atlas-SNP
RPL3L	6123	hgsc.bcm.edu	37	16	1996720	1996720	+	Missense_Mutation	SNP	C	C	T	rs147512517		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	15	47	0	0.46875	0	C|1.000;T|0.000	0.000	weak	RPL3L,caecum,carcinoma,-1,1	RPL3L	42	1	NM_005061	exon7	c.G857A	p.R286H	CCGATGCGGAAGA	.	PASS	Atlas-SNP
EXO5	64789	hgsc.bcm.edu	37	1	40981230	40981230	+	Silent	SNP	G	G	A	rs3795344	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	48	123	0	0.505263	0	G|0.958;A|0.042	0.042	strong	.	.	.	.	NM_022774	exon3	c.G1014A	p.E338E	CGTGGAGGAGGCT	.	PASS	Atlas-SNP
CAAP1	79886	hgsc.bcm.edu	37	9	26892654	26892654	+	Silent	SNP	G	G	A	rs3739548	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	41	0	0.464286	0	G|0.879;C|0.000;A|0.121	0.121	strong	.	.	.	.	NM_024828	exon1	c.C60T	p.A20A	CGCTGCGGCCGCC	.	PASS	Atlas-SNP
SCARF1	8578	hgsc.bcm.edu	37	17	1538669	1538669	+	Missense_Mutation	SNP	C	C	T	rs36108564	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	42	75	0	0.506024	0	C|0.913;T|0.087	0.087	strong	.	SCARF1	46	.	NM_003693	exon11	c.G1876A	p.G626S	CAGGACCCGACTG	.	PASS	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	73102442	73102442	+	Silent	SNP	C	C	T	rs2815738	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	55	103	0	0.495495	0	T|0.158;C|0.842	0.158	strong	.	RIMS1	278	.	NM_014989	exon31	c.C4548T	p.F1516F	TCAATTCAGTGAT	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202733238	202733238	+	Silent	SNP	C	C	T	rs3196669	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	55	65	0	1	0	C|0.346;T|0.654	0.654	strong	.	KDM5B	166	.	NM_006618	exon6	c.G747A	p.T249T	GGCTTCCGTTGTC	.	PASS	Atlas-SNP
HOXB6	3216	hgsc.bcm.edu	37	17	46675240	46675240	+	Silent	SNP	G	G	T	rs34438598	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	31	45	0	0.596154	0	G|0.956;T|0.044	0.044	strong	.	HOXB6	13	.	NM_018952	exon3	c.C273A	p.S91S	GGCGCCGGAGAGT	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187542736	187542736	+	Silent	SNP	T	T	C	rs35753072	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	92	237	0	0.455446	0	T|0.926;C|0.074	0.074	strong	.	FAT1	500	.	NM_005245	exon10	c.A5004G	p.T1668T	TTTTGATGTAAAC	.	PASS	Atlas-SNP
USP10	9100	hgsc.bcm.edu	37	16	84778685	84778685	+	Missense_Mutation	SNP	A	A	G	rs1862792	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	68	110	0	0.417178	0	A|0.797;G|0.203	0.203	strong	.	USP10	51	.	NM_001272075	exon5	c.A610G	p.M204V	GGTGACATGCCCC	.	PASS	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	37	8	56270383	56270383	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	224	3	221	1	0.0133929	0.00452489	.	.	none	XKR4,NS,carcinoma,-2,1	XKR4	104	1	NM_052898	exon2	c.C952T	p.L318L	CCACAGCTGGTCC	.	scavenged	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	37	6	170176146	170176146	+	Missense_Mutation	SNP	G	G	A	rs41265401	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	54	98	0	0.473684	0	G|0.925;A|0.075	0.075	strong	.	C6orf70	63	.	NM_018341	exon15	c.G1505A	p.R502H	TGGATCGTCTTCC	.	PASS	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	37	9	133924451	133924451	+	Missense_Mutation	SNP	C	C	T	rs869457	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	122	107	0	0.99187	0	C|0.729;T|0.271	0.271	strong	.	LAMC3	167	.	NM_006059	exon9	c.C1564T	p.P522S	GAGCACCCCCCAC	.	PASS	Atlas-SNP
HNRPDL	9987	hgsc.bcm.edu	37	4	83348652	83348652	+	Silent	SNP	T	T	C	rs61729822	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	68	151	0	0.379888	0	T|0.975;C|0.025	0.025	strong	.	HNRPDL	35	.	NM_031372	exon4	c.A840G	p.T280T	AGTATATGTGATA	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12414725	12414725	+	Nonsense_Mutation	SNP	G	G	A	rs17165936	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	67	150	0	0.462069	0	G|0.840;A|0.160	0.160	strong	.	VWDE	123	.	NM_001135924	exon8	c.C1153T	p.R385X	CATCTCGAGAAAA	.	PASS	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	37	15	29421059	29421059	+	Missense_Mutation	SNP	A	A	C	rs200682124	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	16	56	0	0.307692	0	.	.	weak	.	FAM189A1	20	.	NM_015307	exon8	c.T936G	p.S312R	ACCTATACTTGTA	.	PASS	Atlas-SNP
C6orf211	79624	hgsc.bcm.edu	37	6	151789912	151789912	+	Silent	SNP	C	C	T	rs9397054	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	57	112	0	0.483051	0	C|0.855;T|0.145	0.145	strong	.	C6orf211	30	.	NM_024573	exon5	c.C993T	p.H331H	TTACCACAATCAT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417147	105417147	+	Silent	SNP	A	A	G	rs2013445	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	214	257	0	1	0	A|0.593;G|0.407	0.407	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T4641C	p.S1547S	GTCAGCAGAAGGG	.	PASS	Atlas-SNP
CBS	875	hgsc.bcm.edu	37	21	44480616	44480616	+	Silent	SNP	G	G	A	rs1801181	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	13	28	0	0.65	0	G|0.720;A|0.280	0.280	strong	.	CBS	85	.	NM_000071	exon12	c.C1080T	p.A360A	CTGCGCGGCCTTC	.	PASS	Atlas-SNP
SLC27A2	11001	hgsc.bcm.edu	37	15	50475035	50475035	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	20	45	0	0.454545	0	.	.	none	.	SLC27A2	50	.	NM_003645	exon1	c.C411T	p.N137N	TTACAACATCCGC	.	PASS	Atlas-SNP
GALNT8	26290	hgsc.bcm.edu	37	12	4853806	4853806	+	Missense_Mutation	SNP	A	A	G	rs34776842	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	26	32	0	0.530612	0	A|0.927;G|0.073	0.073	strong	.	GALNT8	89	.	NM_017417	exon4	c.A800G	p.E267G	GCTGGGAAGCTGC	.	PASS	Atlas-SNP
OR5F1	338674	hgsc.bcm.edu	37	11	55761528	55761528	+	Missense_Mutation	SNP	T	T	C	rs35607186	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	51	120	0	0.425	0	T|0.905;C|0.095	0.095	strong	OR5F1,NS,carcinoma,+1,1	OR5F1	116	1	NM_003697	exon1	c.A574G	p.T192A	GGATTGTGTCAGA	.	PASS	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	37	4	76797739	76797739	+	Nonsense_Mutation	SNP	G	G	A	rs149631239	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	144	312	0	0.49827	0	G|0.999;A|0.001	0.001	strong	.	PPEF2	108	.	NM_006239	exon11	c.C1021T	p.Q341X	GTCCCTGTGCAGA	.	PASS	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	37	6	31324057	31324057	+	Missense_Mutation	SNP	C	C	A	rs12697943	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	118	168	0	0.408305	0	C|0.990;A|0.010	0.010	strong	.	HLA-B	54	.	NM_005514	exon3	c.G506T	p.R169L	CACTTGCGCTGGG	.	PASS	Atlas-SNP
CDON	50937	hgsc.bcm.edu	37	11	125851055	125851055	+	Silent	SNP	A	A	G	rs564214	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	69	137	0	0.463087	0	A|0.698;G|0.302	0.302	strong	CDON,brain,glioma,0,1	CDON	137	1	NM_016952	exon17	c.T3165C	p.N1055N	GACTGCATTGGGG	.	PASS	Atlas-SNP
MS4A6A	64231	hgsc.bcm.edu	37	11	59940599	59940599	+	Missense_Mutation	SNP	T	T	A	rs7232	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	49	64	0	1	0	T|0.641;A|0.359	0.359	strong	.	MS4A6A	85	.	NM_001247999	exon7	c.A637T	p.T213S	AGAGAGTTCCCTG	.	PASS	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204924020	204924020	+	Missense_Mutation	SNP	C	C	T	rs3795564	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	38	92	0	0.493506	0	C|0.993;T|0.007	0.007	strong	.	NFASC	396	.	NM_001005388	exon7	c.C476T	p.T159M	CTTTGACGCTCCA	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	37	2	160711045	160711045	+	Missense_Mutation	SNP	G	G	C	rs3951216	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	162	170	0	1	0	G|0.536;C|0.464	0.464	strong	.	LY75	151	.	NM_002349	exon18	c.C2421G	p.D807E	AGCACGGTCTAAA	.	PASS	Atlas-SNP
LDLRAD1	388633	hgsc.bcm.edu	37	1	54483792	54483792	+	Silent	SNP	G	G	T	rs116802374	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	52	96	0	0.448276	0	G|0.979;T|0.021	0.021	strong	.	LDLRAD1	22	.	NM_001276392	exon1	c.C58A	p.R20R	GTCTTCGGTTTCC	.	PASS	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	37	19	5455796	5455796	+	Silent	SNP	A	A	G	rs420325	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	38	49	0	1	0	A|0.316;G|0.684	0.684	strong	ZNRF4,colon,carcinoma,0,2	ZNRF4	59	2	NM_181710	exon1	c.A294G	p.A98A	GCAGGCAGTGGTA	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216592003	216592003	+	Silent	SNP	T	T	C	rs4253963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	150	129	2	0.993378	0.0155039	T|0.380;C|0.620	0.620	strong	USH2A,NS,carcinoma,-1,1	USH2A	1168	1	NM_007123	exon3	c.A504G	p.T168T	ATCTACTGTCTTT	.	scavenged	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	37	12	40688695	40688695	+	Silent	SNP	T	T	C	rs7966550	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	62	92	0	0.639175	0	T|0.907;C|0.093	0.093	strong	LRRK2_ENST00000298910,NS,carcinoma,0,2	LRRK2	763	2	NM_198578	exon22	c.T2857C	p.L953L	AAAATATTATCTT	.	PASS	Atlas-SNP
RASAL3	64926	hgsc.bcm.edu	37	19	15574858	15574858	+	Silent	SNP	C	C	T	rs78677793	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	23	55	0	0.353846	0	C|0.894;T|0.106	0.106	strong	.	RASAL3	49	.	NM_022904	exon2	c.G312A	p.P104P	CTGCTCCGGCTCC	.	PASS	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	37	19	58003488	58003488	+	Silent	SNP	A	A	G	rs2074070	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	138	169	1	0.846626	0.00591716	A|0.647;G|0.353	0.353	strong	.	ZNF419	134	.	NM_001098491	exon4	c.A210G	p.A70A	ACTTGCATCTTCC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093368	1093368	+	Silent	SNP	G	G	A	rs111440994		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	3	70	0	0.0326087	0	.	.	weak	MUC2_ENST00000441003,NS,carcinoma,0,8	MUC2	614	8	NM_002457	exon30	c.G5187A	p.T1729T	CACTACGGTGACC	.	scavenged	Atlas-SNP
TRIM14	9830	hgsc.bcm.edu	37	9	100862339	100862339	+	Silent	SNP	C	C	A	rs35830621	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	75	180	0	0.454545	0	C|0.951;A|0.049	0.049	strong	.	TRIM14	24	.	NM_033219	exon3	c.G411T	p.T137T	AAGCTGCGTGTTT	.	PASS	Atlas-SNP
STRA6	64220	hgsc.bcm.edu	37	15	74473739	74473739	+	Missense_Mutation	SNP	C	C	T	rs736118	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	56	75	0	0.528302	0	C|0.873;T|0.127	0.127	strong	STRA6,NS,carcinoma,0,1	STRA6	66	1	NM_001199042	exon17	c.G1698A	p.M566I	GGCCACCATGGCA	.	PASS	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	37	3	123419782	123419782	+	Missense_Mutation	SNP	G	G	A	rs3732485	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	22	23	0	0.511628	0	G|0.987;A|0.013	0.013	strong	.	MYLK	224	.	NM_053025	exon18	c.C2533T	p.R845C	CATAGCGGTCACT	.	PASS	Atlas-SNP
CCDC65	85478	hgsc.bcm.edu	37	12	49312540	49312540	+	Missense_Mutation	SNP	C	C	T	rs78877829	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	43	127	0	0.417476	0	C|0.965;T|0.035	0.035	strong	.	CCDC65	41	.	NM_033124	exon6	c.C880T	p.R294C	TATATCCGTAATG	.	PASS	Atlas-SNP
POPDC2	64091	hgsc.bcm.edu	37	3	119379186	119379186	+	Missense_Mutation	SNP	C	C	T	rs4688023	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	42	92	0	0.466667	0	C|0.615;T|0.385	0.385	strong	.	POPDC2	36	.	NM_022135	exon1	c.G85A	p.V29I	GGTAGACAGCCCC	.	PASS	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56386358	56386358	+	Silent	SNP	T	T	A	rs2526360	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	33	66	1	0.485294	0.0151515	T|0.704;A|0.296	0.296	strong	BZRAP1_ENST00000355701,NS,carcinoma,0,2	BZRAP1	287	2	NM_004758	exon22	c.A4275T	p.R1425R	GTGTTCTCGGGGA	.	scavenged	Atlas-SNP
CCDC170	80129	hgsc.bcm.edu	37	6	151907027	151907027	+	Missense_Mutation	SNP	G	G	A	rs41290243	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	65	123	0	0.52	0	G|0.986;A|0.014	0.014	strong	.	.	.	.	NM_025059	exon7	c.G1096A	p.V366I	CAGATGGTCTCCC	.	PASS	Atlas-SNP
ACACB	32	hgsc.bcm.edu	37	12	109684125	109684125	+	Missense_Mutation	SNP	G	G	A	rs61752535	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	96	190	0	0.45283	0	G|0.937;A|0.063	0.063	strong	.	ACACB	330	.	NM_001093	exon38	c.G5443A	p.E1815K	GCATCCGAGATGG	.	PASS	Atlas-SNP
USPL1	10208	hgsc.bcm.edu	37	13	31231778	31231778	+	Missense_Mutation	SNP	G	G	C	rs17609459	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	34	97	0	0.435897	0	C|0.020;G|0.980	0.020	strong	.	USPL1	82	.	NM_005800	exon9	c.G1564C	p.A522P	CAACACGCTCTCA	.	PASS	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	37	19	12985576	12985576	+	Silent	SNP	A	A	G	rs11085822	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	66	85	1	0.666667	0.0117647	A|0.639;G|0.361	0.361	strong	MAST1_ENST00000251472,NS,carcinoma,0,2	MAST1	214	2	NM_014975	exon26	c.A4605G	p.S1535S	GGGCTCAGGCACC	.	scavenged	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	37	19	22574357	22574357	+	Missense_Mutation	SNP	C	C	G	rs78240139		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	711	106	718	0	0.149086	0	C|0.500;G|0.500	0.500	weak	ZNF98_ENST00000357774,NS,carcinoma,0,4	ZNF98	230	4	NM_001098626	exon4	c.G1680C	p.K560N	GGAAATCTTTGCA	.	scavenged	Atlas-SNP
TEX101	83639	hgsc.bcm.edu	37	19	43922061	43922061	+	Silent	SNP	A	A	G	rs3816438	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	403	206	394	0	0.511166	0	A|0.783;G|0.217	0.217	strong	.	TEX101	28	.	NM_031451	exon8	c.A477G	p.P159P	TTGTCCAACCTGT	.	PASS	Atlas-SNP
MC5R	4161	hgsc.bcm.edu	37	18	13826088	13826088	+	Silent	SNP	C	C	T	rs17848292	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	91	166	0	0.598684	0	C|0.850;T|0.150	0.150	strong	.	MC5R	83	.	NM_005913	exon1	c.C324T	p.D108D	AGCAGACGCCTTT	.	PASS	Atlas-SNP
PADI4	23569	hgsc.bcm.edu	37	1	17668563	17668563	+	Missense_Mutation	SNP	G	G	A	rs35903413	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	71	111	0	0.510791	0	G|0.908;A|0.092	0.092	strong	.	PADI4	70	.	NM_012387	exon7	c.G778A	p.D260N	GACACCGACTTCC	.	PASS	Atlas-SNP
WRNIP1	56897	hgsc.bcm.edu	37	6	2770468	2770468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	3	129	0	0.0223881	0	.	.	none	WRNIP1,NS,carcinoma,-1,1	WRNIP1	39	1	NM_020135	exon3	c.C1129T	p.L377F	ATTGTTCTTGAGA	.	scavenged	Atlas-SNP
TNFRSF10B	8795	hgsc.bcm.edu	37	8	22926313	22926313	+	Missense_Mutation	SNP	G	G	A	rs1129424	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	10	7	15	0	0.7	0	G|0.295;A|0.705	0.705	strong	.	TNFRSF10B	34	.	NM_147187	exon1	c.C95T	p.P32L	ACCCGGGGCCCAG	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201919	24201919	+	Silent	SNP	T	T	C	rs35761398	bycluster;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	49	137	1	0.475728	0.00729927	CC|1.000;|0.000	.	alt	CNR2,NS,carcinoma,-1,2	CNR2	78	2	NM_001841	exon2	c.A189G	p.Q63Q	GCGGAGTTGGTGG	.	scavenged	Atlas-SNP
SEC14L5	9717	hgsc.bcm.edu	37	16	5050897	5050897	+	Silent	SNP	G	G	C	rs2286966	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	79	87	0	1	0	G|0.589;C|0.411	0.411	strong	.	SEC14L5	79	.	NM_014692	exon10	c.G1101C	p.G367G	TGAGGGGAGCACA	.	PASS	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	37	1	94473845	94473845	+	Silent	SNP	T	T	C	rs2275029	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	41	81	0	0.431579	0	T|0.804;C|0.196	0.196	strong	ABCA4,NS,carcinoma,0,1	ABCA4	275	1	NM_000350	exon42	c.A5844G	p.P1948P	GGTGCCTGGATAA	.	PASS	Atlas-SNP
ALDH3A1	218	hgsc.bcm.edu	37	17	19644472	19644472	+	Silent	SNP	A	A	T	rs2072330	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	81	153	0	0.457627	0	A|0.701;T|0.299	0.299	strong	.	ALDH3A1	40	.	NM_001135168	exon5	c.T741A	p.P247P	GTAGTCAGGGGCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418155	105418155	+	Silent	SNP	G	G	C	rs141600524	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	47	240	0	1	0	G|0.897;C|0.103	0.103	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C3633G	p.L1211L	AATGCTGAGGTCA	.	PASS	Atlas-SNP
MCM8	84515	hgsc.bcm.edu	37	20	5966626	5966626	+	Missense_Mutation	SNP	G	G	T	rs150257637	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	70	115	0	0.448718	0	G|0.999;T|0.001	0.001	strong	.	MCM8	125	.	NM_032485	exon16	c.G2012T	p.G671V	ACATTGGCTATGC	.	PASS	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	37	16	4649300	4649300	+	Missense_Mutation	SNP	C	C	G	rs7195763	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	73	139	0	0.51773	0	C|0.901;G|0.099	0.099	strong	.	C16orf96	28	.	NM_001145011	exon15	c.C3143G	p.S1048C	CTCCATCTCCCCC	.	PASS	Atlas-SNP
CCT2	10576	hgsc.bcm.edu	37	12	69986788	69986788	+	Silent	SNP	A	A	G	rs1043434	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	57	65	0	1	0	A|0.800;G|0.200	0.200	strong	.	CCT2	49	.	NM_006431	exon9	c.A783G	p.T261T	CTCTACAGCAAAG	.	PASS	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21174496	21174496	+	Missense_Mutation	SNP	C	C	T	rs12824121	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	46	119	0	0.438095	0	C|0.990;T|0.010	0.010	strong	.	SLCO1B7	85	.	NM_001009562	exon3	c.C320T	p.P107L	GAACACCGTCTGA	.	PASS	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	37	11	108383676	108383676	+	Missense_Mutation	SNP	A	A	G	rs10749920	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	77	149	0	0.478261	0	A|0.676;G|0.324	0.324	strong	.	EXPH5	193	.	NM_015065	exon6	c.T2558C	p.L853P	TCAGTCAGTGCAG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1266537	1266537	+	Silent	SNP	G	G	T	rs199659189	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	316	94	440	2	0.297468	0.00454545	G|0.790;T|0.211	0.211	strong	MUC5B,NS,carcinoma,0,2	MUC5B	473	2	NM_002458	exon31	c.G8427T	p.L2809L	AGCCCTGTCCAGC	.	scavenged	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33499071	33499071	+	Silent	SNP	G	G	A	rs10410414	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	21	47	0	0.428571	0	G|0.809;A|0.191	0.191	strong	.	RHPN2	107	.	NM_033103	exon7	c.C609T	p.T203T	AACCCCGGTGAGA	.	PASS	Atlas-SNP
ADAM15	8751	hgsc.bcm.edu	37	1	155030557	155030557	+	Silent	SNP	A	A	C	rs11264303	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	29	49	0	0.508772	0	A|0.558;C|0.442	0.442	strong	.	ADAM15	92	.	NM_001261464	exon14	c.A1677C	p.T559T	CCAGACAGCTAAT	.	PASS	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	37	19	53209554	53209554	+	Missense_Mutation	SNP	G	G	T	rs76627659		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	69	152	0	0.5	0	.	.	weak	ZNF611,NS,carcinoma,+1,1	ZNF611	72	1	NM_030972	exon7	c.C754A	p.P252T	AATGGGGTATCTG	.	PASS	Atlas-SNP
UNC93A	54346	hgsc.bcm.edu	37	6	167709702	167709702	+	Nonsense_Mutation	SNP	G	G	A	rs2235197	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	91	199	0	0.502762	0	G|0.915;A|0.085	0.085	strong	.	UNC93A	66	.	NM_018974	exon3	c.G452A	p.W151X	GTGTGTGGGGCAA	.	PASS	Atlas-SNP
KCNMB3	27094	hgsc.bcm.edu	37	3	178962463	178962463	+	Silent	SNP	C	C	T	rs372618559		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	234	8	185	0	0.034188	0	.	.	weak	KCNMB3_ENST00000497599,NS,carcinoma,0,4	KCNMB3	46	4	NM_014407	exon3	c.G279A	p.S93S	GCAGGTCGATTCT	.	scavenged	Atlas-SNP
CNTNAP1	8506	hgsc.bcm.edu	37	17	40835922	40835922	+	Silent	SNP	A	A	C	rs2271029	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	29	54	0	0.568627	0	A|0.417;C|0.583	0.583	strong	CNTNAP1,rectum,carcinoma,0,2	CNTNAP1	116	2	NM_003632	exon2	c.A151C	p.R51R	GCGCCGAGATTCG	.	PASS	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79064143	79064143	+	Silent	SNP	C	C	G	rs11635870	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	34	89	0	0.485714	0	C|0.715;G|0.285	0.285	strong	.	ADAMTS7	142	.	NM_014272	exon15	c.G2160C	p.A720A	TGCGCCCGCTGGG	.	PASS	Atlas-SNP
SLC17A2	10246	hgsc.bcm.edu	37	6	25916979	25916979	+	Silent	SNP	C	C	T	rs1865760	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	49	85	0	0.466667	0	C|0.634;T|0.366	0.366	strong	.	SLC17A2	70	.	NM_005835	exon8	c.G864A	p.L288L	GGTGCACAACCAG	.	PASS	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	37	5	52201722	52201722	+	Missense_Mutation	SNP	C	C	T	rs4145748	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	89	133	0	0.539394	0	C|0.929;T|0.071	0.071	strong	ITGA1,NS,carcinoma,0,1	ITGA1	112	1	NM_181501	exon12	c.C1439T	p.T480M	TCCAGACGCTCAG	.	PASS	Atlas-SNP
PDIA6	10130	hgsc.bcm.edu	37	2	10930903	10930903	+	Missense_Mutation	SNP	T	T	C	rs4807	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	88	149	0	0.56051	0	T|0.748;C|0.252	0.252	strong	PDIA6,colon,carcinoma,0,1	PDIA6	31	1	NM_005742	exon7	c.A641G	p.K214R	TTCACTTTTCCTT	.	PASS	Atlas-SNP
GAK	2580	hgsc.bcm.edu	37	4	882643	882643	+	Silent	SNP	G	G	A	rs2279181	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	81	100	0	1	0	G|0.901;A|0.099	0.099	strong	.	GAK	104	.	NM_005255	exon11	c.C1197T	p.S399S	AGCGACGGACTGG	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	603625	603625	+	Silent	SNP	T	T	C	rs56342526	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	49	126	0	0.418803	0	T|0.866;C|0.134	0.134	strong	.	HCN2	36	.	NM_001194	exon2	c.T714C	p.D238D	CAAGGATGAGACC	.	PASS	Atlas-SNP
SLC25A6	293	hgsc.bcm.edu	37	X	1510877	1510877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	28	81	0	0.444444	0	.	.	none	.	SLC25A6	27	.	NM_001636	exon1	c.C26G	p.A9G	TCTTTGGCGAAGG	.	PASS	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	37	15	76726465	76726465	+	Missense_Mutation	SNP	G	G	T	rs1607017	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	165	195	0	0.993976	0	G|0.674;T|0.326	0.326	strong	.	SCAPER	160	.	NM_020843	exon25	c.C3265A	p.P1089T	GTGAGGGTTTGTT	.	PASS	Atlas-SNP
ZNF492	57615	hgsc.bcm.edu	37	19	22846867	22846867	+	Silent	SNP	G	G	A	rs74406853	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	110	198	0	0.594595	0	G|0.955;A|0.045	0.045	strong	.	ZNF492	129	.	NM_020855	exon4	c.G396A	p.T132T	ACATACGATAAGA	.	PASS	Atlas-SNP
ACPT	93650	hgsc.bcm.edu	37	19	51297826	51297826	+	Missense_Mutation	SNP	C	C	A	rs55735528	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	32	84	0	0.450704	0	C|0.752;A|0.248	0.248	strong	.	ACPT	43	.	NM_033068	exon9	c.C974A	p.A325D	ATCCCGCCAAAGA	.	PASS	Atlas-SNP
IL27	246778	hgsc.bcm.edu	37	16	28513403	28513403	+	Missense_Mutation	SNP	A	A	G	rs181206	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	30	61	0	0.545455	0	A|0.798;G|0.202	0.202	strong	.	IL27	27	.	NM_145659	exon4	c.T356C	p.L119P	CCCAGCAGGGCAT	.	PASS	Atlas-SNP
CES1	1066	hgsc.bcm.edu	37	16	55853545	55853545	+	Missense_Mutation	SNP	C	C	A	rs115629050	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	41	64	0	0.460674	0	C|0.955;A|0.045	0.045	strong	.	CES1	78	.	NM_001025195	exon7	c.G808T	p.A270S	TGATAGCAATTTG	.	PASS	Atlas-SNP
FBXO11	80204	hgsc.bcm.edu	37	2	48059539	48059539	+	Silent	SNP	A	A	G	rs141756242	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	35	130	0	0.343137	0	A|0.998;G|0.002	0.002	strong	.	FBXO11	127	.	NM_001190274	exon11	c.T1347C	p.N449N	AATATGATTCCGT	.	PASS	Atlas-SNP
PPFIA1	8500	hgsc.bcm.edu	37	11	70118489	70118489	+	Missense_Mutation	SNP	G	G	A	rs546502	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	76	86	0	0.987013	0	G|0.821;A|0.179	0.179	strong	.	PPFIA1	114	.	NM_177423	exon2	c.G211A	p.V71I	CACGAGGTTGGTC	.	PASS	Atlas-SNP
OR2M7	391196	hgsc.bcm.edu	37	1	248487300	248487300	+	Missense_Mutation	SNP	C	C	T	rs4916129	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	381	180	379	1	0.472441	0.00263852	C|0.571;T|0.429	0.429	strong	.	OR2M7	84	.	NM_001004691	exon1	c.G571A	p.D191N	ATGTGTCATTGCA	.	PASS	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	37	8	27293865	27293865	+	Silent	SNP	C	C	T	rs7005936	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	309	130	334	0	0.420712	0	C|0.638;T|0.362	0.362	strong	PTK2B_ENST00000544172,brain,glioma,0,6	PTK2B	304	6	NM_173174	exon20	c.C1341T	p.H447H	AAATCACGTGAGT	.	PASS	Atlas-SNP
ZNF160	90338	hgsc.bcm.edu	37	19	53572494	53572494	+	Silent	SNP	G	G	T	rs11665677	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	57	70	0	0.581633	0	G|0.683;T|0.317	0.317	strong	ZNF160,NS,carcinoma,-1,1	ZNF160	75	1	NM_001102603	exon7	c.C1293A	p.G431G	GACTTTGCCACAT	.	PASS	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88783100	88783100	+	Missense_Mutation	SNP	T	T	C	rs1803382	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	35	61	0	0.522388	0	T|0.811;C|0.189	0.189	strong	.	PIEZO1	79	.	NM_001142864	exon47	c.A6793G	p.I2265V	TGACGATGTCCTC	.	PASS	Atlas-SNP
SSBP2	23635	hgsc.bcm.edu	37	5	80736444	80736444	+	Silent	SNP	A	A	G	rs9596	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	305	121	262	0	0.396721	0	A|0.544;G|0.456	0.456	strong	.	SSBP2	25	.	NM_001256732	exon14	c.T885C	p.G295G	CCCAGGACCCATT	.	PASS	Atlas-SNP
WDR4	10785	hgsc.bcm.edu	37	21	44283574	44283574	+	Silent	SNP	C	C	T	rs11911090	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	65	139	0	0.419355	0	C|0.895;T|0.105	0.105	strong	.	WDR4	35	.	NM_018669	exon4	c.G429A	p.G143G	CAGGTGCCCCAGC	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133539566	133539566	+	Silent	SNP	G	G	A	rs6730282	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	285	285	328	0	1	0	G|0.434;A|0.566	0.566	strong	.	NCKAP5	322	.	NM_207363	exon14	c.C4818T	p.H1606H	AGGGCTGTGTCTA	.	PASS	Atlas-SNP
C20orf196	149840	hgsc.bcm.edu	37	20	5843812	5843812	+	Silent	SNP	T	T	C	rs1699233	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	111	154	0	1	0	T|0.525;C|0.475	0.475	strong	.	C20orf196	17	.	NM_152504	exon3	c.T321C	p.G107G	GTTTGGTCATCCA	.	PASS	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	37	15	77176158	77176158	+	Missense_Mutation	SNP	T	T	C	rs3812908	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	140	165	0	0.992908	0	T|0.628;C|0.372	0.372	strong	.	SCAPER	160	.	NM_020843	exon1	c.A1G	p.M1V	CCATCATTCTTTA	.	PASS	Atlas-SNP
FAM166B	730112	hgsc.bcm.edu	37	9	35562549	35562549	+	Silent	SNP	G	G	A	rs755774	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	29	50	0	0.568627	0	G|0.653;A|0.347	0.347	strong	.	FAM166B	19	.	NM_001164310	exon5	c.C567T	p.C189C	GCGGGCGCAGGGC	.	PASS	Atlas-SNP
KRTAP29-1	100533177	hgsc.bcm.edu	37	17	39458893	39458893	+	Missense_Mutation	SNP	G	G	A	rs758741	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	49	87	0	0.471154	0	G|0.768;A|0.232	0.232	strong	.	KRTAP29-1	2	.	NM_001257309	exon1	c.C211T	p.R71C	GAAGGCGGGTAGG	.	PASS	Atlas-SNP
DDX55	57696	hgsc.bcm.edu	37	12	124102305	124102305	+	Missense_Mutation	SNP	T	T	A	rs147152712	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	63	104	0	0.504	0	T|0.999;A|0.001	0.001	strong	.	DDX55	51	.	NM_020936	exon11	c.T1050A	p.S350R	TCACAGTGCCTTC	.	PASS	Atlas-SNP
ENPP5	59084	hgsc.bcm.edu	37	6	46135283	46135283	+	Silent	SNP	A	A	G	rs34450398	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	275	144	276	1	0.523636	0.00362319	A|0.951;G|0.049	0.049	strong	.	ENPP5	44	.	NM_021572	exon2	c.T717C	p.H239H	CATTCCATGATCA	.	PASS	Atlas-SNP
PAM	5066	hgsc.bcm.edu	37	5	102345546	102345546	+	Silent	SNP	A	A	C	rs2230457	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	35	69	0	0.448718	0	A|0.744;C|0.256;T|0.000	0.256	strong	.	PAM	180	.	NM_138822	exon20	c.A2307C	p.I769I	AATTATAGACATC	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	37	12	104067812	104067812	+	Silent	SNP	C	C	T	rs11614418	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	28	56	0	0.491228	0	C|0.625;T|0.375	0.375	strong	.	STAB2	370	.	NM_017564	exon23	c.C2499T	p.Y833Y	GCCCTACGTGCAG	.	PASS	Atlas-SNP
MTR	4548	hgsc.bcm.edu	37	1	237058828	237058828	+	Silent	SNP	C	C	T	rs1131449	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	108	188	0	0.559586	0	C|0.456;G|0.000;T|0.544	0.544	strong	MTR,NS,carcinoma,0,2	MTR	127	2	NM_000254	exon31	c.C3576T	p.L1192L	GAGACTCGCAGAC	.	PASS	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	37	17	36667022	36667022	+	Silent	SNP	C	C	T	rs15537	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	10	11	0	0.833333	0	C|0.926;T|0.074	0.074	strong	.	ARHGAP23	48	.	NM_001199417	exon24	c.C4290T	p.P1430P	GGGCCCCCCGGAG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152278689	152278689	+	Silent	SNP	C	C	A	rs57672167	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	806	456	515	2	0.565757	0.0038835	C|0.688;A|0.312	0.312	strong	FLG,NS,carcinoma,-2,1	FLG	900	1	NM_002016	exon3	c.G8673T	p.V2891V	CTGGCTCACACTG	.	PASS	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	37	2	204073414	204073414	+	Missense_Mutation	SNP	A	A	G	rs140112414	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	72	217	0	0.48	0	A|0.964;G|0.036	0.036	strong	NBEAL1_ENST00000449802,NS,carcinoma,0,2	NBEAL1	266	2	NM_001114132	exon51	c.A7474G	p.T2492A	GGACACACCAACG	.	PASS	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	37	17	9792872	9792872	+	Silent	SNP	T	T	C	rs17681708	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	32	84	0	0.457143	0	T|0.817;C|0.183	0.183	strong	GLP2R,NS,carcinoma,0,1	GLP2R	90	1	NM_004246	exon13	c.T1512C	p.H504H	CCTACATCTAGCC	.	PASS	Atlas-SNP
OR5R1	219479	hgsc.bcm.edu	37	11	56185224	56185224	+	Missense_Mutation	SNP	A	A	G	rs12785840	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	110	55	0	0.982143	0	A|0.853;G|0.147	0.147	strong	OR5R1,NS,carcinoma,0,1	OR5R1	83	1	NM_001004744	exon1	c.T485C	p.I162T	AAAGTGATAACGG	.	PASS	Atlas-SNP
OR52R1	119695	hgsc.bcm.edu	37	11	4824878	4824878	+	Missense_Mutation	SNP	A	A	C	rs2053116	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	70	125	0	0.614035	0	A|0.631;C|0.369	0.369	strong	.	OR52R1	81	.	NM_001005177	exon1	c.T733G	p.S245A	GGGAGGAACGTGT	.	PASS	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	37	16	1291188	1291188	+	Silent	SNP	C	C	T	rs62012906		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	138	134	0	0.726316	0	.	.	weak	TPSAB1,NS,carcinoma,0,1	TPSAB1	24	1	NM_003294	exon3	c.C96T	p.V32V	CATCGTCGGGGGT	.	PASS	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	37	2	98736225	98736225	+	Missense_Mutation	SNP	C	C	T	rs2305355	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	59	114	0	0.561905	0	C|0.875;T|0.125	0.125	strong	.	VWA3B	138	.	NM_144992	exon4	c.C541T	p.R181W	ATCATACGGTGAG	.	PASS	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	37	12	5841733	5841733	+	Missense_Mutation	SNP	A	A	C	rs1860961	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	75	154	0	0.46875	0	A|0.870;C|0.130	0.130	strong	ANO2,NS,carcinoma,0,1	ANO2	309	1	NM_020373	exon15	c.T1498G	p.S500A	CAGCAGACTGGTT	.	PASS	Atlas-SNP
SOAT2	8435	hgsc.bcm.edu	37	12	53509933	53509933	+	Missense_Mutation	SNP	C	C	T	rs2272296	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	87	143	0	0.514793	0	C|0.751;T|0.249	0.249	strong	.	SOAT2	44	.	NM_003578	exon7	c.C761T	p.T254I	CTGGGACCCTTCG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152283283	152283283	+	Missense_Mutation	SNP	C	C	T	rs11586631	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	86	201	0	0.421569	0	C|0.851;T|0.149	0.149	strong	.	FLG	900	.	NM_002016	exon3	c.G4079A	p.R1360H	TGGTGGCGGGATC	.	PASS	Atlas-SNP
UGCG	7357	hgsc.bcm.edu	37	9	114694486	114694486	+	Silent	SNP	A	A	G	rs7850023	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	110	213	0	0.518868	0	A|0.701;G|0.299	0.299	strong	.	UGCG	32	.	NM_003358	exon8	c.A861G	p.T287T	TGCTACAATAATT	.	PASS	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	37	2	11727507	11727507	+	Splice_Site	SNP	G	G	A	rs13394619	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	44	59	0	0.511628	0	G|0.377;A|0.623	0.623	strong	GREB1_ENST00000263834,NS,carcinoma,0,1	GREB1	308	1	NM_148903	exon10	c.1160-1G>A	.	ACTGCAGTATTTG	.	PASS	Atlas-SNP
LILRB4	11006	hgsc.bcm.edu	37	19	55175009	55175009	+	Missense_Mutation	SNP	G	G	T	rs11540761	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	336	182	224	1	0.541667	0.00446429	G|0.810;T|0.190	0.190	strong	.	LILRB4	86	.	NM_006847	exon2	c.G54T	p.R18S	CCCCAGGACCCAC	.	PASS	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	37	19	7615903	7615903	+	Silent	SNP	G	G	A	rs8107538	bycluster;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	12	12	0	0.8	0	G|0.793;A|0.207	0.207	strong	.	PNPLA6	163	.	NM_001166111	exon19	c.G2121A	p.P707P	GCAGCCGCGAGCC	.	PASS	Atlas-SNP
STRN4	29888	hgsc.bcm.edu	37	19	47223949	47223949	+	Silent	SNP	G	G	A	rs313841	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	97	225	0	0.489899	0	G|0.913;N|0.000	.	strong	.	STRN4	33	.	NM_001039877	exon17	c.C2193T	p.H731H	CTCCTCGTGCTTC	.	PASS	Atlas-SNP
GPC1	2817	hgsc.bcm.edu	37	2	241404317	241404317	+	Silent	SNP	C	C	T	rs2229458	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	96	113	0	1	0	C|0.493;T|0.507	0.507	strong	GPC1,NS,carcinoma,0,1	GPC1	32	1	NM_002081	exon6	c.C1059T	p.P353P	GGGCCCCGGGCCT	.	PASS	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	37	8	133192521	133192521	+	Silent	SNP	A	A	G	rs41272389	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	19	55	0	0.387755	0	A|0.951;G|0.049	0.049	strong	.	KCNQ3	164	.	NM_004519	exon4	c.T660C	p.N220N	CAGAACATTGCCT	.	PASS	Atlas-SNP
NPHP4	261734	hgsc.bcm.edu	37	1	5926507	5926507	+	Silent	SNP	T	T	C	rs555164	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	60	128	0	0.416667	0	T|0.698;C|0.302	0.302	strong	NPHP4,NS,carcinoma,0,1	NPHP4	119	1	NM_015102	exon26	c.A3570G	p.E1190E	CCGTGGTTCCCCG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152278856	152278856	+	Missense_Mutation	SNP	T	T	G	rs11582087	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	726	165	553	1	0.227273	0.00180832	T|0.892;G|0.108	0.108	strong	.	FLG	900	.	NM_002016	exon3	c.A8506C	p.S2836R	TTGCACTTCTGGA	.	PASS	Atlas-SNP
NFKBID	84807	hgsc.bcm.edu	37	19	36387378	36387378	+	Silent	SNP	C	C	G	rs73590883	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	62	124	0	0.492063	0	C|0.972;G|0.028	0.028	strong	.	NFKBID	30	.	NM_139239	exon7	c.G321C	p.L107L	TGCTCCCAGGTTC	.	PASS	Atlas-SNP
EVPLL	645027	hgsc.bcm.edu	37	17	18291559	18291559	+	Silent	SNP	T	T	C	rs9890369	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	439	175	358	0	0.398633	0	T|0.770;C|0.230	0.230	strong	EVPLL,NS,NS,+2,1	EVPLL	10	1	NM_001145127	exon10	c.T903C	p.H301H	TCCTCATTGACTC	.	PASS	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	37	18	347254	347254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	250	3	241	0	0.012	0	.	.	none	COLEC12,NS,carcinoma,-1,1	COLEC12	121	1	NM_130386	exon5	c.G368A	p.R123H	ATCTCACGAAGTT	.	scavenged	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	37	9	78938186	78938186	+	Missense_Mutation	SNP	G	G	C	rs2803429	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	47	126	0	0.431193	0	G|0.675;C|0.325	0.325	strong	.	PCSK5	329	.	NM_001190482	exon31	c.G4240C	p.E1414Q	GAAAAGGAGACTA	.	PASS	Atlas-SNP
GRIN1	2902	hgsc.bcm.edu	37	9	140051376	140051376	+	Silent	SNP	G	G	A	rs1126442	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	66	115	0	0.511628	0	G|0.800;A|0.200	0.200	strong	.	GRIN1	51	.	NM_001185091	exon7	c.G918A	p.V306V	CGCCGTGGGCGTG	.	PASS	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	37	9	117110046	117110046	+	Missense_Mutation	SNP	C	C	T	rs3748178	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	31	50	0	0.574074	0	C|0.891;T|0.109	0.109	strong	.	AKNA	119	.	NM_030767	exon16	c.G3356A	p.R1119Q	GCTGGCCGGCCGC	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144875979	144875979	+	Silent	SNP	G	G	C	rs71664005	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	32	155	0	0.231884	0	G|0.216;C|0.784	0.784	strong	.	PDE4DIP	817	.	NM_014644	exon29	c.C4701G	p.L1567L	TTACCTGAGGGCC	.	PASS	Atlas-SNP
STRBP	55342	hgsc.bcm.edu	37	9	125895238	125895238	+	Missense_Mutation	SNP	C	C	T	rs79286922	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	61	139	0	0.469231	0	C|0.988;T|0.012	0.012	strong	.	STRBP	73	.	NM_018387	exon17	c.G1783A	p.V595I	TCACAACGCCCTT	.	PASS	Atlas-SNP
LCT	3938	hgsc.bcm.edu	37	2	136590746	136590746	+	Missense_Mutation	SNP	C	C	T	rs3754689	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	70	0	1	0	C|0.681;T|0.319	0.319	strong	LCT,colon,carcinoma,+1,2	LCT	309	2	NM_002299	exon2	c.G655A	p.V219I	GGACAACAGAGAG	.	PASS	Atlas-SNP
TRIM17	51127	hgsc.bcm.edu	37	1	228602660	228602660	+	Silent	SNP	G	G	C	rs503203	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	47	113	0	0.494737	0	G|0.745;C|0.255	0.255	strong	.	TRIM17	66	.	NM_001024940	exon2	c.C114G	p.A38A	GATGCAGGCTCGG	.	PASS	Atlas-SNP
MTIF2	4528	hgsc.bcm.edu	37	2	55490788	55490788	+	Silent	SNP	T	T	C	rs1134722	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	31	57	1	0.484375	0.0175439	T|0.941;C|0.059	0.059	strong	MTIF2,NS,carcinoma,0,1	MTIF2	64	1	NM_002453	exon4	c.A207G	p.L69L	TGTTACTAGAAGC	.	scavenged	Atlas-SNP
KDM5C	8242	hgsc.bcm.edu	37	X	53230909	53230909	+	Silent	SNP	C	C	T	rs74850270	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	110	90	0	1	0	C|0.988;T|0.012	0.012	strong	.	KDM5C	385	.	NM_004187	exon14	c.G1884A	p.Q628Q	AATGCACTGGCGC	.	PASS	Atlas-SNP
TAS1R1	80835	hgsc.bcm.edu	37	1	6639073	6639073	+	Missense_Mutation	SNP	G	G	A	rs149418903	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	115	169	1	0.522727	0.00591716	G|0.999;A|0.001	0.001	strong	TAS1R1,colon,carcinoma,0,1	TAS1R1	76	1	NM_138697	exon6	c.G1955A	p.R652H	CAGTTCGCTCATT	.	scavenged	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57077464	57077464	+	Silent	SNP	T	T	C	rs10896602	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	86	164	0	0.477778	0	T|0.650;C|0.350	0.350	strong	.	TNKS1BP1	148	.	NM_033396	exon6	c.A2721G	p.Q907Q	CAAATCTTGGCCC	.	PASS	Atlas-SNP
LCN10	414332	hgsc.bcm.edu	37	9	139634451	139634451	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	46	95	0	0.474227	0	.	.	none	.	LCN10	21	.	NM_001001712	exon5	c.T525C	p.A175A	GTCACAAGCGTCC	.	PASS	Atlas-SNP
FNDC7	163479	hgsc.bcm.edu	37	1	109256135	109256135	+	Silent	SNP	T	T	C	rs11102279	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	117	184	1	0.567961	0.00543478	T|0.865;C|0.135	0.135	strong	.	FNDC7	113	.	NM_001144937	exon2	c.T66C	p.V22V	TCAGGTTGCTTCA	.	PASS	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105152282	105152282	+	Missense_Mutation	SNP	G	G	A	rs209373	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	207	246	1	0.985714	0.00406504	0|0.030;A|0.341	0.341	strong	.	NRK	321	.	NM_198465	exon12	c.G1072A	p.V358M	TACACCGTGAGAA	.	PASS	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	37	11	55594869	55594869	+	Missense_Mutation	SNP	G	G	A	rs56711116	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	104	200	0	0.479263	0	G|0.901;A|0.099	0.099	strong	OR5L2,colon,carcinoma,0,2	OR5L2	135	2	NM_001004739	exon1	c.G175A	p.V59M	ACCCCCGTGTACT	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33036999	33036999	+	Missense_Mutation	SNP	T	T	C	rs199711661		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	58	84	0	0.537037	0	.	.	weak	.	HLA-DPA1	20	.	NM_033554	exon3	c.A425G	p.K142R	AAGAACTTGTCAA	.	PASS	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	37	22	37915100	37915100	+	Silent	SNP	A	A	G	rs7287804	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	4	13	0	0.2	0	A|0.879;G|0.121	0.121	strong	.	CARD10	55	.	NM_014550	exon1	c.T108C	p.H36H	CAGCCGATGCCGG	.	PASS	Atlas-SNP
MEGF6	1953	hgsc.bcm.edu	37	1	3428608	3428608	+	Missense_Mutation	SNP	G	G	A	rs11585362	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	306	160	231	1	0.522876	0.004329	G|0.738;A|0.262	0.262	strong	.	MEGF6	91	.	NM_001409	exon8	c.C938T	p.A313V	TAGCCCGCGTGAC	.	PASS	Atlas-SNP
OR10A6	390093	hgsc.bcm.edu	37	11	7950024	7950024	+	Silent	SNP	A	A	G	rs12272735	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	114	222	0	0.450593	0	A|0.658;G|0.342	0.342	strong	.	OR10A6	49	.	NM_001004461	exon1	c.T186C	p.F62F	CAGGAGAAACAGG	.	PASS	Atlas-SNP
KIAA1671	85379	hgsc.bcm.edu	37	22	25573431	25573431	+	Silent	SNP	G	G	A	rs12168578	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	87	196	0	0.450777	0	G|0.899;A|0.101	0.101	strong	.	KIAA1671	28	.	NM_001145206	exon7	c.G5016A	p.E1672E	GTCCGAGAGCAGA	.	PASS	Atlas-SNP
ZFAND2A	90637	hgsc.bcm.edu	37	7	1195215	1195215	+	Silent	SNP	A	A	C	rs1133116	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	63	119	0	0.466667	0	A|0.857;C|0.143	0.143	strong	.	ZFAND2A	9	.	NM_182491	exon4	c.T156G	p.V52V	GACGTGAACATCC	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371223	240371223	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	20	74	0	0.19802	0	.	.	none	FMN2,NS,carcinoma,0,3	FMN2	451	3	NM_020066	exon5	c.C3111T	p.P1037P	ACTTCCCGGAGCG	.	PASS	Atlas-SNP
TFB2M	64216	hgsc.bcm.edu	37	1	246714587	246714587	+	Silent	SNP	G	G	A	rs10754526	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	45	171	0	0.401786	0	G|0.554;A|0.446	0.446	strong	.	TFB2M	46	.	NM_022366	exon5	c.C723T	p.P241P	ATTTCCGGGATCT	.	PASS	Atlas-SNP
OR4E2	26686	hgsc.bcm.edu	37	14	22134018	22134018	+	Missense_Mutation	SNP	C	C	T	rs61732411	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	115	208	0	0.547619	0	C|0.830;T|0.170	0.170	strong	OR4E2,NS,carcinoma,-1,1	OR4E2	44	1	NM_001001912	exon1	c.C722T	p.S241L	CCTGCTCGGCCCA	.	PASS	Atlas-SNP
SNN	8303	hgsc.bcm.edu	37	16	11769948	11769948	+	Silent	SNP	C	C	T	rs1050068	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	24	38	0	0.436364	0	C|0.695;T|0.305	0.305	strong	.	SNN	7	.	NM_003498	exon2	c.C33T	p.G11G	CACGGGCGTGGTC	.	PASS	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	37	5	148996328	148996328	+	Silent	SNP	G	G	A	rs57292511	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	72	105	0	0.590164	0	G|0.954;A|0.046	0.046	strong	.	ARHGEF37	45	.	NM_001001669	exon5	c.G657A	p.V219V	GGAAGTGGGTAAG	.	PASS	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	37	4	25032135	25032135	+	Missense_Mutation	SNP	C	C	T	rs74901868	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	45	42	0	0.517241	0	C|0.806;T|0.194	0.194	strong	.	LGI2	62	.	NM_018176	exon1	c.G181A	p.G61S	TGTCGCCCGGCAC	.	PASS	Atlas-SNP
FOXN1	8456	hgsc.bcm.edu	37	17	26864302	26864302	+	Missense_Mutation	SNP	G	G	C	rs532648	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	91	166	0	0.526012	0	G|0.618;C|0.382	0.382	strong	.	FOXN1	51	.	NM_003593	exon8	c.G1795C	p.A599P	TTGGCAGCCCCGG	.	PASS	Atlas-SNP
SPNS1	83985	hgsc.bcm.edu	37	16	28995145	28995145	+	Silent	SNP	C	C	T	rs4788114	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	26	51	0	0.509804	0	C|0.943;T|0.057	0.057	strong	.	SPNS1	47	.	NM_001142448	exon12	c.C1359T	p.F453F	CTCCTTCTTGTCC	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9057704	9057704	+	Silent	SNP	G	G	T	rs12984130	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	218	113	170	0	0.518349	0	G|0.768;T|0.232	0.232	strong	.	MUC16	4315	.	NM_024690	exon3	c.C29742A	p.I9914I	GGACATGATTTCT	.	PASS	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79089111	79089111	+	Missense_Mutation	SNP	A	A	G	rs3825807	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	32	57	0	0.52459	0	A|0.704;G|0.296	0.296	strong	.	ADAMTS7	142	.	NM_014272	exon4	c.T640C	p.S214P	GTCGAGACTCCAG	.	PASS	Atlas-SNP
TEK	7010	hgsc.bcm.edu	37	9	27190655	27190655	+	Missense_Mutation	SNP	G	G	A	rs1334811	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	69	147	0	0.50365	0	G|0.928;A|0.072	0.072	strong	.	TEK	250	.	NM_000459	exon10	c.G1456A	p.V486I	AAACCCGTTAATC	.	PASS	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	37	18	77474921	77474921	+	Silent	SNP	G	G	A	rs2126082	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	19	17	0	0.655172	0	G|0.813;A|0.187	0.187	strong	.	CTDP1	67	.	NM_004715	exon8	c.G1461A	p.P487P	GAAGCCGAAGGCT	.	PASS	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	37	11	12247813	12247813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	5	95	0	0.0403226	0	.	.	none	MICAL2,NS,haematopoietic_neoplasm,0,1	MICAL2	114	1	NM_014632	exon14	c.C1784T	p.T595M	TGACCACGGGCAA	.	PASS	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	37	14	24808388	24808388	+	Silent	SNP	A	A	G	rs3181247	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	54	108	0	0.482143	0	A|0.926;G|0.074	0.074	strong	RIPK3,NS,carcinoma,0,1	RIPK3	43	1	NM_006871	exon3	c.T304C	p.L102L	CCGACAAGGAGCC	.	PASS	Atlas-SNP
GSG2	83903	hgsc.bcm.edu	37	17	3628362	3628362	+	Missense_Mutation	SNP	T	T	C	rs3809806	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	45	97	0	0.517241	0	T|0.447;C|0.553	0.553	strong	GSG2_ENST00000325418,NS,carcinoma,0,1	GSG2	48	1	NM_031965	exon1	c.T1133C	p.V378A	AGAATGTCTGCTT	.	PASS	Atlas-SNP
SYTL3	94120	hgsc.bcm.edu	37	6	159178345	159178345	+	Missense_Mutation	SNP	C	C	T	rs901363	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	30	67	0	0.447761	0	C|0.605;T|0.394	0.394	strong	.	SYTL3	49	.	NM_001242384	exon15	c.C1240T	p.P414S	ATCATTCCTCTGG	.	PASS	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	37	3	53845295	53845295	+	Silent	SNP	C	C	T	rs10154841	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	44	63	0	0.494382	0	C|0.753;T|0.247	0.247	strong	.	CACNA1D	324	.	NM_000720	exon49	c.C6408T	p.N2136N	AGCCAACGGGGAT	.	PASS	Atlas-SNP
NDUFS2	4720	hgsc.bcm.edu	37	1	161172233	161172233	+	Missense_Mutation	SNP	C	C	A	rs11538340	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	51	92	0	0.435897	0	A|0.068;C|0.932;G|0.000	0.068	strong	.	NDUFS2	33	.	NM_001166159	exon1	c.C58A	p.P20T	CTGCGGCCTGGGG	.	PASS	Atlas-SNP
ANKH	56172	hgsc.bcm.edu	37	5	14769103	14769103	+	Silent	SNP	G	G	A	rs17251667	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	298	151	220	0	0.506711	0	G|0.877;A|0.123	0.123	strong	.	ANKH	64	.	NM_054027	exon2	c.C294T	p.A98A	AAAGACGGCAGCG	.	PASS	Atlas-SNP
MRPS35	60488	hgsc.bcm.edu	37	12	27867727	27867727	+	Missense_Mutation	SNP	G	G	A	rs1127787	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	24	75	0	0.380952	0	G|0.873;A|0.127	0.127	strong	.	MRPS35	26	.	NM_001190864	exon2	c.G127A	p.G43R	ACACCCGGAAATG	.	PASS	Atlas-SNP
GCNT1	2650	hgsc.bcm.edu	37	9	79118400	79118400	+	Missense_Mutation	SNP	C	C	T	rs147866228	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	258	129	182	0	0.5	0	C|0.994;T|0.006	0.006	strong	.	GCNT1	52	.	NM_001490	exon4	c.C1103T	p.P368L	GTGCTCCCTACCC	.	PASS	Atlas-SNP
ELP6	54859	hgsc.bcm.edu	37	3	47545911	47545911	+	Missense_Mutation	SNP	G	G	A	rs377204125		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	33	13	25	0	0.393939	0	.	.	weak	.	.	.	.	NM_001031703	exon4	c.C232T	p.R78C	GCCCACGCTCCCG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281523	152281523	+	Missense_Mutation	SNP	A	A	C	rs80059102	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	510	151	338	2	0.296078	0.00591716	A|0.917;C|0.081;G|0.002	0.081	strong	FLG,NS,carcinoma,+1,1	FLG	900	1	NM_002016	exon3	c.T5839G	p.W1947G	GCTCCCAAGCAGA	.	scavenged	Atlas-SNP
SP100	6672	hgsc.bcm.edu	37	2	231331896	231331896	+	Silent	SNP	G	G	A	rs1050224	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	49	74	0	0.604938	0	G|0.320;A|0.680	0.680	strong	.	SP100	167	.	NM_001206702	exon13	c.G1257A	p.S419S	AGCCTCGAGCGGG	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	603874	603874	+	Silent	SNP	C	C	T	rs55780677	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	32	57	0	0.516129	0	C|0.837;T|0.163	0.163	strong	.	HCN2	36	.	NM_001194	exon2	c.C963T	p.R321R	GGCACGCGCCCTG	.	PASS	Atlas-SNP
DUSP10	11221	hgsc.bcm.edu	37	1	221912334	221912334	+	Silent	SNP	T	T	G	rs35552569	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	102	230	0	0.434043	0	T|0.997;G|0.003	0.003	strong	.	DUSP10	64	.	NM_007207	exon2	c.A753C	p.P251P	GTGAAGTGGCTGG	.	PASS	Atlas-SNP
SUSD5	26032	hgsc.bcm.edu	37	3	33195284	33195284	+	Silent	SNP	G	G	A	rs61743511	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	42	75	0	0.531646	0	G|0.848;A|0.152	0.152	strong	SUSD5,NS,carcinoma,0,1	SUSD5	53	1	NM_015551	exon5	c.C840T	p.P280P	ATCTGCGGGGACA	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39253815	39253815	+	Silent	SNP	G	G	A	rs77163010	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	85	195	0	0.438144	0	G|0.983;A|0.017	0.017	strong	.	KRTAP4-8	57	.	NM_031960	exon1	c.C522T	p.C174C	GCGGGGGCAGGTG	.	PASS	Atlas-SNP
SMCR7	125170	hgsc.bcm.edu	37	17	18167684	18167684	+	Missense_Mutation	SNP	G	G	A	rs12603700	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	23	45	0	0.589744	0	G|0.896;A|0.104	0.104	strong	.	SMCR7	20	.	NM_148886	exon4	c.G1004A	p.G335E	TGGAGGGGCTGGC	.	PASS	Atlas-SNP
SFTPA1	653509	hgsc.bcm.edu	37	10	81373810	81373810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	432	218	419	0	0.50463	0	.	.	none	.	SFTPA1	23	.	NM_001093770	exon6	c.G733A	p.D245N	TACACAGATGGGC	.	PASS	Atlas-SNP
OR5AU1	390445	hgsc.bcm.edu	37	14	21623290	21623290	+	Missense_Mutation	SNP	T	T	C	rs7145814	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	92	129	0	0.989247	0	T|0.240;C|0.760	0.760	strong	.	OR5AU1	46	.	NM_001004731	exon1	c.A895G	p.I299V	GGCAGATGGCAGT	.	PASS	Atlas-SNP
DHDH	27294	hgsc.bcm.edu	37	19	49438363	49438363	+	Missense_Mutation	SNP	G	G	A	rs2270941	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	29	16	0	1	0	G|0.533;A|0.467	0.467	strong	DHDH,NS,carcinoma,0,1	DHDH	35	1	NM_014475	exon2	c.G197A	p.S66N	ACCCGAGCGTGGG	.	PASS	Atlas-SNP
GPLD1	2822	hgsc.bcm.edu	37	6	24437408	24437408	+	Silent	SNP	G	G	A	rs61733145	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	41	101	0	0.518987	0	G|0.961;A|0.039	0.039	strong	GPLD1,NS,adenoma,0,1	GPLD1	91	1	NM_001503	exon21	c.C2130T	p.S710S	GTCTCCGCTGAAG	.	PASS	Atlas-SNP
ANKEF1	63926	hgsc.bcm.edu	37	20	10032413	10032413	+	Silent	SNP	T	T	G	rs683145	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	29	81	0	0.371795	0	T|0.752;G|0.248	0.248	strong	.	.	.	.	NM_198798	exon7	c.T1746G	p.A582A	TGGAGCTTTAATA	.	PASS	Atlas-SNP
GJA4	2701	hgsc.bcm.edu	37	1	35260769	35260769	+	Missense_Mutation	SNP	C	C	T	rs1764391	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	27	44	0	0.482143	0	C|0.634;T|0.366	0.366	strong	.	GJA4	25	.	NM_002060	exon2	c.C955T	p.P319S	CAAAAACCCCCAA	.	PASS	Atlas-SNP
CLHC1	130162	hgsc.bcm.edu	37	2	55404883	55404883	+	Silent	SNP	T	T	C	rs13032294	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	40	61	0	0.588235	0	T|0.932;C|0.068	0.068	strong	C2orf63_ENST00000407122,NS,carcinoma,0,2	.	.	2	NM_152385	exon12	c.A1419G	p.Q473Q	TTCAACTTGGGGA	.	PASS	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056072	26056072	+	Silent	SNP	G	G	C	rs8384	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	60	118	0	0.508475	0	G|0.834;C|0.166	0.166	strong	.	HIST1H1C	80	.	NM_005319	exon1	c.C585G	p.P195P	GGCCTTGGGCTTC	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	37	5	73163831	73163831	+	Silent	SNP	C	C	T	rs2931423	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	57	110	0	0.475	0	C|0.759;T|0.241	0.241	strong	.	.	.	.	NM_001080479	exon19	c.C2283T	p.G761G	TCCAGGCACCACC	.	PASS	Atlas-SNP
MON2	23041	hgsc.bcm.edu	37	12	62965212	62965212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	4	113	0	0.04	0	.	.	none	.	MON2	160	.	NM_015026	exon30	c.C4364T	p.S1455F	GCCCTTCTGAAAG	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158604391	158604391	+	Missense_Mutation	SNP	T	T	C	rs16830483	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	68	134	0	0.503704	0	T|0.947;C|0.053	0.053	strong	.	SPTA1	720	.	NM_003126	exon39	c.A5507G	p.N1836S	TTTTCATTGATCC	.	PASS	Atlas-SNP
COG3	83548	hgsc.bcm.edu	37	13	46067593	46067593	+	Silent	SNP	G	G	A	rs2985959	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	113	148	1	1	0.00675676	G|0.624;A|0.376	0.376	strong	COG3,NS,carcinoma,0,1	COG3	52	1	NM_031431	exon12	c.G1299A	p.E433E	AAATGAGGTGCTT	.	PASS	Atlas-SNP
ZNF202	7753	hgsc.bcm.edu	37	11	123600380	123600380	+	Missense_Mutation	SNP	C	C	T	rs145114988	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	58	93	0	0.537037	0	C|0.998;T|0.002	0.002	strong	.	ZNF202	72	.	NM_003455	exon5	c.G556A	p.A186T	CCGGTGCCCCCAG	.	PASS	Atlas-SNP
AMPH	273	hgsc.bcm.edu	37	7	38431481	38431481	+	Silent	SNP	C	C	A	rs1058655	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	61	106	0	0.491935	0	C|0.852;A|0.148	0.148	strong	.	AMPH	157	.	NM_001635	exon19	c.G1746T	p.P582P	CAGCTCCGGTGTC	.	PASS	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	37	2	210558162	210558162	+	Missense_Mutation	SNP	G	G	A	rs741006	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	80	195	0	0.493827	0	G|0.850;A|0.150	0.150	strong	.	MAP2	372	.	NM_002374	exon7	c.G1268A	p.R423K	AGCAAAGGGATAC	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17130199	17130199	+	Silent	SNP	G	G	A	rs41289311	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	72	99	0	0.637168	0	G|0.968;A|0.032	0.032	strong	.	CUBN	515	.	NM_001081	exon15	c.C1911T	p.L637L	GTGCTCGAGGCTC	.	PASS	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202705455	202705455	+	Silent	SNP	G	G	C	rs1141109	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	93	114	0	0.978947	0	T|0.000;G|0.349;C|0.651	0.651	strong	.	KDM5B	166	.	NM_006618	exon21	c.C3150G	p.P1050P	ATGTACGGGGATA	.	PASS	Atlas-SNP
RTDR1	27156	hgsc.bcm.edu	37	22	23482460	23482460	+	Silent	SNP	A	A	G	rs4822360	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	43	82	0	0.462366	0	A|0.436;G|0.564	0.564	strong	RTDR1,NS,carcinoma,0,1	RTDR1	39	1	NM_014433	exon2	c.T148C	p.L50L	CACACAAGGCCAT	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72830539	72830539	+	Missense_Mutation	SNP	C	C	G	rs62051555	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	68	129	0	0.489209	0	C|0.973;G|0.027	0.027	strong	.	ZFHX3	404	.	NM_006885	exon9	c.G6042C	p.Q2014H	CTCGAGCTGTTTG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179579822	179579822	+	Silent	SNP	T	T	A	rs2562836	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	114	238	0	0.48927	0	T|0.630;N|0.001	.	strong	.	TTN	18412	.	NM_001267550	exon90	c.A26091T	p.L8697L	ACTGGTTAGGAAG	.	PASS	Atlas-SNP
ZNF280C	55609	hgsc.bcm.edu	37	X	129349295	129349295	+	Silent	SNP	T	T	G	rs209238	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	63	89	0	1	0	0|0.003;G|0.509	0.509	strong	.	ZNF280C	63	.	NM_017666	exon15	c.A1851C	p.G617G	GTGAATTCCCCGA	.	PASS	Atlas-SNP
NPTXR	23467	hgsc.bcm.edu	37	22	39222627	39222627	+	Missense_Mutation	SNP	G	G	A	rs34637063	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	58	91	1	0.53211	0.010989	G|0.996;A|0.004	0.004	strong	NPTXR,colon,carcinoma,0,2	NPTXR	34	2	NM_014293	exon3	c.C976T	p.R326W	TGGACCGCAGCCA	.	scavenged	Atlas-SNP
SLC14A1	6563	hgsc.bcm.edu	37	18	43319274	43319274	+	Silent	SNP	G	G	A	rs17675299	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	63	123	0	0.434483	0	G|0.960;A|0.040	0.040	strong	.	SLC14A1	84	.	NM_001146037	exon6	c.G978A	p.A326A	AGCAGCGGGTGAG	.	PASS	Atlas-SNP
TNPO3	23534	hgsc.bcm.edu	37	7	128641226	128641226	+	Silent	SNP	G	G	C	rs2305324	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	170	138	0	0.994152	0	G|0.635;C|0.365	0.365	strong	.	TNPO3	148	.	NM_012470	exon6	c.C759G	p.L253L	GGCATAGAGAGCT	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90500627	90500627	+	Missense_Mutation	SNP	G	G	A	rs34946554	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	28	52	0	0.538462	0	G|0.915;A|0.085	0.085	strong	.	.	.	.	NM_178828	exon4	c.G1225A	p.V409M	TGGAACGTGTCAA	.	PASS	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	37	9	78506145	78506145	+	Silent	SNP	G	G	A	rs7020560	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	16	56	0	0.551724	0	G|0.877;A|0.123	0.123	strong	.	PCSK5	329	.	NM_006200	exon1	c.G48A	p.L16L	CCTGCTGTGCGTG	.	PASS	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	37	7	38796570	38796570	+	Silent	SNP	G	G	A	rs2240350	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	17	51	0	0.459459	0	G|0.643;A|0.357	0.357	strong	.	VPS41	102	.	NM_014396	exon19	c.C1563T	p.D521D	GTTCTTGTCATAG	.	PASS	Atlas-SNP
NEK2	4751	hgsc.bcm.edu	37	1	211836789	211836789	+	Silent	SNP	T	T	C	rs12031285	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	308	143	291	1	0.464286	0.00343643	T|0.733;C|0.267	0.267	strong	.	NEK2	49	.	NM_002497	exon8	c.A1317G	p.R439R	GATCTGTCTGCTT	.	PASS	Atlas-SNP
PTGS1	5742	hgsc.bcm.edu	37	9	125143973	125143973	+	Missense_Mutation	SNP	C	C	A	rs5789	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	27	78	0	0.369863	0	C|0.979;A|0.021	0.021	strong	.	PTGS1	84	.	NM_000962	exon7	c.C709A	p.L237M	GACAATCTGGAGC	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	34113010	34113010	+	Silent	SNP	C	C	T	rs2288613	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	62	50	0	0.984127	0	C|0.577;N|0.001	.	strong	RYR3,NS,carcinoma,0,1	RYR3	760	1	NM_001036	exon78	c.C10812T	p.F3604F	AACATTCGAAGTA	.	PASS	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24416070	24416070	+	Silent	SNP	G	G	C	rs7533060	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	48	89	0	0.527473	0	G|0.447;C|0.553	0.553	strong	.	MYOM3	131	.	NM_152372	exon14	c.C1572G	p.P524P	GGGGCTGGGCTCC	.	PASS	Atlas-SNP
CYP3A43	64816	hgsc.bcm.edu	37	7	99447241	99447241	+	Silent	SNP	T	T	C	rs800667	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	128	149	0	1	0	T|0.798;G|0.002	.	strong	.	CYP3A43	52	.	NM_057096	exon7	c.T594C	p.N198N	CAACAATCCACAA	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225237950	225237950	+	Missense_Mutation	SNP	A	A	G	rs78320839	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	84	186	0	0.435233	0	A|0.991;G|0.009	0.009	strong	.	DNAH14	300	.	NM_001373	exon16	c.A1951G	p.I651V	CTGTCTATCTTCA	.	PASS	Atlas-SNP
MRPL9	65005	hgsc.bcm.edu	37	1	151733327	151733327	+	Missense_Mutation	SNP	T	T	C	rs74228558	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	7	19	0	0.333333	0	T|0.909;C|0.091	0.091	strong	.	MRPL9	21	.	NM_031420	exon6	c.A637G	p.I213V	GTGTGATAGGCTC	.	PASS	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39908506	39908506	+	Missense_Mutation	SNP	G	G	A	rs587404	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	53	99	0	0.452991	0	G|0.640;A|0.360	0.360	strong	MACF1_ENST00000361689,NS,carcinoid-endocrine_tumour,-1,2	MACF1	909	2	NM_012090	exon75	c.G13048A	p.A4350T	TTGGAAGCCATGA	.	PASS	Atlas-SNP
C16orf59	80178	hgsc.bcm.edu	37	16	2512523	2512523	+	Silent	SNP	G	G	A	rs3810794	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	30	50	0	0.535714	0	G|0.724;A|0.276	0.276	strong	.	C16orf59	13	.	NM_025108	exon7	c.G858A	p.S286S	GCTCTCGGCAGGT	.	PASS	Atlas-SNP
SIRT3	23410	hgsc.bcm.edu	37	11	233212	233212	+	Silent	SNP	C	C	A	rs11555236	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	83	0	1	0	C|0.849;A|0.151	0.151	strong	.	SIRT3	28	.	NM_012239	exon3	c.G477T	p.S159S	CCCCGGCGATCTG	.	PASS	Atlas-SNP
CRTAC1	55118	hgsc.bcm.edu	37	10	99625319	99625319	+	Missense_Mutation	SNP	C	C	T	rs56007204	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	68	101	0	0.539683	0	C|0.846;T|0.154	0.154	strong	CRTAC1,NS,adenoma,0,2	CRTAC1	86	2	NM_018058	exon15	c.G1972A	p.E658K	TGGGCTCGCAGCT	.	PASS	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	37	7	139801777	139801777	+	Silent	SNP	T	T	G	rs1062277	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	96	157	0	0.592593	0	T|0.659;G|0.341	0.341	strong	.	JHDM1D	54	.	NM_030647	exon12	c.A1612C	p.R538R	CTAATCTTTTGAG	.	PASS	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	37	19	57839150	57839150	+	Missense_Mutation	SNP	A	A	G	rs8100491	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	118	143	0	1	0	A|0.278;G|0.722	0.722	strong	ZNF543,NS,lymphoid_neoplasm,+1,2	ZNF543	61	2	NM_213598	exon4	c.A320G	p.Q107R	AGGAACAACTGAC	.	PASS	Atlas-SNP
COX10	1352	hgsc.bcm.edu	37	17	13980058	13980058	+	Missense_Mutation	SNP	A	A	T	rs2230351	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	31	79	0	0.492063	0	A|0.940;T|0.060	0.060	strong	.	COX10	36	.	NM_001303	exon3	c.A184T	p.T62S	TATGTCACACAGC	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123847355	123847355	+	Silent	SNP	G	G	A	rs10788237	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	26	42	0	0.553191	0	G|0.767;A|0.233	0.233	strong	TACC2,colon,carcinoma,0,1	TACC2	271	1	NM_206862	exon4	c.G5340A	p.G1780G	GCCAGGGCCTGAG	.	PASS	Atlas-SNP
FAM194A	131831	hgsc.bcm.edu	37	3	150391810	150391810	+	Missense_Mutation	SNP	A	A	C	rs73003074	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	40	74	0	0.512821	0	A|0.820;C|0.180	0.180	strong	.	FAM194A	91	.	NM_152394	exon11	c.T1276G	p.L426V	TCTCTAAGAGCTC	.	PASS	Atlas-SNP
NCAPD2	9918	hgsc.bcm.edu	37	12	6637941	6637941	+	Silent	SNP	C	C	T	rs10849484	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	53	85	0	0.486239	0	C|0.847;T|0.153	0.153	strong	.	NCAPD2	99	.	NM_014865	exon26	c.C3396T	p.S1132S	GGTCAGCGAGATG	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141751592	141751592	+	Silent	SNP	G	G	A	rs13007735	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	75	155	0	0.457317	0	G|0.558;A|0.442	0.442	strong	LRP1B,NS,lymphoid_neoplasm,-2,1	LRP1B	1315	1	NM_018557	exon16	c.C2616T	p.D872D	GCTTCCGTCTAGG	.	PASS	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	37	22	43614316	43614316	+	Silent	SNP	C	C	G	rs9620123	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	25	71	0	0.462963	0	C|0.719;G|0.281	0.281	strong	.	SCUBE1	105	.	NM_173050	exon15	c.G1836C	p.A612A	CTCCAGCGCCTTG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1083293	1083293	+	Silent	SNP	T	T	C	rs7394853	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	39	56	2	0.4875	0.0357143	T|0.705;C|0.295	0.295	strong	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	614	2	NM_002457	exon16	c.T2193C	p.D731D	GGGGGATGTGGTC	.	scavenged	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1101078	1101078	+	Missense_Mutation	SNP	A	A	G	rs11245954	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	65	88	0	0.560345	0	A|0.924;G|0.076	0.076	strong	.	MUC2	614	.	NM_002457	exon42	c.A7465G	p.S2489G	AGGTGCAGCCAGA	.	PASS	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42799765	42799765	+	Missense_Mutation	SNP	G	G	A	rs17238798	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	101	172	0	0.517949	0	G|0.817;A|0.183	0.183	strong	.	CCDC13	71	.	NM_144719	exon2	c.C73T	p.R25W	GTAACCGTTTGTG	.	PASS	Atlas-SNP
CUEDC1	404093	hgsc.bcm.edu	37	17	55950064	55950064	+	Silent	SNP	C	C	T	rs35704289	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	61	106	0	0.476562	0	C|0.717;T|0.283	0.283	strong	.	CUEDC1	37	.	NM_001271875	exon5	c.G744A	p.E248E	TTGCAGCTCCTTC	.	PASS	Atlas-SNP
ZNF470	388566	hgsc.bcm.edu	37	19	57088850	57088850	+	Silent	SNP	T	T	C	rs3752180	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	22	69	0	0.458333	0	T|0.693;C|0.307	0.307	strong	.	ZNF470	103	.	NM_001001668	exon6	c.T1053C	p.D351D	TAGTGATTGCTCA	.	PASS	Atlas-SNP
KRTAP12-2	353323	hgsc.bcm.edu	37	21	46086719	46086719	+	Missense_Mutation	SNP	A	A	G	rs63164960	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	109	117	1	1	0.00854701	A|0.470;G|0.530	0.530	strong	.	KRTAP12-2	10	.	NM_181684	exon1	c.T85C	p.S29P	GGCAGGAGCTGGG	.	PASS	Atlas-SNP
MRM1	79922	hgsc.bcm.edu	37	17	34958598	34958598	+	Missense_Mutation	SNP	G	G	C	rs78943308	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	15	28	0	0.384615	0	G|0.947;C|0.053	0.053	strong	MRM1,NS,carcinoma,0,1	MRM1	19	1	NM_024864	exon1	c.G359C	p.C120S	GTGTCTGCATGGA	.	PASS	Atlas-SNP
CENPI	2491	hgsc.bcm.edu	37	X	100395663	100395663	+	Silent	SNP	G	G	T	rs2273380	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	97	135	0	0.979798	0	G|0.697;0|0.002	.	strong	.	CENPI	70	.	NM_006733	exon15	c.G1479T	p.V493V	TAGTGTGCTTCAG	.	PASS	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	37	19	56369215	56369215	+	Silent	SNP	C	C	T	rs395503	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	63	150	0	0.434483	0	C|0.574;T|0.426	0.426	strong	.	NLRP4	331	.	NM_134444	exon3	c.C456T	p.I152I	AGTGATCATTCAA	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306346	+	Missense_Mutation	SNP	C	C	G	rs3865205	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	15	79	1	0.194805	0.0126582	C|0.851;T|0.149	.	strong	TPSD1,rectum,carcinoma,0,4	TPSD1	47	4	NM_012217	exon1	c.C65G	p.P22R	CGAGCCCGGCCTA	.	scavenged	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037557	33037557	+	Silent	SNP	C	C	T	rs1042177	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	52	164	0	0.390977	0	C|0.814;T|0.186	0.186	strong	.	HLA-DPA1	20	.	NM_033554	exon2	c.G207A	p.K69K	CTCCTTCTTGTCC	.	PASS	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101591923	101591923	+	Silent	SNP	A	A	G	rs4965778	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	47	71	0	0.552941	0	A|0.548;G|0.452	0.452	strong	.	LRRK1	310	.	NM_024652	exon24	c.A3447G	p.T1149T	CCTGACAGCCACA	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46911188	46911188	+	Missense_Mutation	SNP	C	C	G	rs79980197	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	120	207	0	0.55814	0	C|0.938;G|0.062	0.062	strong	.	COL18A1	129	.	NM_030582	exon21	c.C2657G	p.P886R	GCCCCCCCGGACC	.	PASS	Atlas-SNP
ZNF514	84874	hgsc.bcm.edu	37	2	95815306	95815306	+	Silent	SNP	C	C	T	rs36045840	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	45	88	0	0.463918	0	C|0.972;T|0.028	0.028	strong	.	ZNF514	34	.	NM_032788	exon5	c.G924A	p.R308R	ATGAGTCCTCTGA	.	PASS	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	37	19	21300462	21300462	+	Missense_Mutation	SNP	A	A	G	rs2884554	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	23	31	0	0.425926	0	A|0.264;G|0.736	0.736	strong	.	ZNF714	121	.	NM_182515	exon5	c.A992G	p.K331R	AACATAAAAGAAT	.	PASS	Atlas-SNP
CPO	130749	hgsc.bcm.edu	37	2	207833983	207833983	+	Silent	SNP	A	A	G	rs7582305	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	159	161	0	0.99375	0	A|0.685;G|0.315	0.315	strong	CPO,NS,carcinoma,+2,1	CPO	42	1	NM_173077	exon9	c.A948G	p.T316T	TGGAACATATGGG	.	PASS	Atlas-SNP
GFOD2	81577	hgsc.bcm.edu	37	16	67709262	67709262	+	Silent	SNP	G	G	A	rs34895002	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	40	61	0	0.555556	0	G|0.980;A|0.020	0.020	strong	.	GFOD2	36	.	NM_030819	exon3	c.C954T	p.F318F	CCCCTGGAAGGAC	.	PASS	Atlas-SNP
ZNF268	10795	hgsc.bcm.edu	37	12	133780033	133780033	+	Silent	SNP	C	C	T	rs189953075	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	6	5	2	0	0.833333	0	C|0.997;T|0.003	0.003	strong	.	ZNF268	71	.	NM_001165881	exon6	c.C1761T	p.T587T	ATGCACCGACTGT	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	37	11	244141	244141	+	Missense_Mutation	SNP	G	G	A	rs7128029	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	83	146	0	0.988095	0	G|0.202;N|0.000	.	strong	.	PSMD13	53	.	NM_175932	exon2	c.G196A	p.A66T	TCAAAGGCTGGTG	.	PASS	Atlas-SNP
TIPIN	54962	hgsc.bcm.edu	37	15	66641417	66641417	+	Silent	SNP	T	T	C	rs11856320	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	328	174	294	0	0.530488	0	T|0.945;C|0.055	0.055	strong	.	TIPIN	23	.	NM_017858	exon6	c.A456G	p.E152E	AAAATCTTCATGT	.	PASS	Atlas-SNP
AKR1C2	1646	hgsc.bcm.edu	37	10	5043747	5043747	+	Missense_Mutation	SNP	C	C	G	rs142672563	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	327	158	274	0	0.48318	0	C|0.998;G|0.002	0.002	strong	.	AKR1C2	68	.	NM_001354	exon4	c.G211C	p.D71H	TGCCATCTGCAAT	.	PASS	Atlas-SNP
CRYBG3	131544	hgsc.bcm.edu	37	3	97660106	97660106	+	Missense_Mutation	SNP	A	A	C	rs4857302	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	49	104	0	0.449541	0	A|0.498;C|0.502	0.502	strong	.	CRYBG3	86	.	NM_153605	exon20	c.A8620C	p.N2874H	GGAAAGAATACTC	.	PASS	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	37	11	102643718	102643718	+	Silent	SNP	G	G	T	rs17359286	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	39	106	0	0.428571	0	G|0.976;T|0.024	0.024	strong	.	MMP10	44	.	NM_002425	exon8	c.C1086A	p.I362I	TCCTCTGATGGCC	.	PASS	Atlas-SNP
ACTL9	284382	hgsc.bcm.edu	37	19	8808900	8808900	+	Missense_Mutation	SNP	A	A	G	rs10410943	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	62	145	0	0.469697	0	A|0.251;G|0.749	0.749	strong	.	ACTL9	74	.	NM_178525	exon1	c.T152C	p.V51A	ACCACCACGCCGG	.	PASS	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29679401	29679401	+	Silent	SNP	A	A	G	rs55865524	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	66	119	0	0.545455	0	A|0.999;G|0.001	0.001	strong	.	NF1	1586	.	NM_001042492	exon51	c.A7584G	p.Q2528Q	GGGGCAACCTTCT	.	PASS	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	37	17	650518	650518	+	Silent	SNP	G	G	A	rs35696687	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	151	142	0	0.986928	0	G|0.897;A|0.103	0.103	strong	.	GEMIN4	116	.	NM_015721	exon2	c.C765T	p.D255D	GGGGTCGTCCTCT	.	PASS	Atlas-SNP
CHID1	66005	hgsc.bcm.edu	37	11	870446	870446	+	Missense_Mutation	SNP	G	G	A	rs6682	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	39	96	0	0.443182	0	G|0.487;A|0.513	0.513	strong	.	CHID1	29	.	NM_001142676	exon12	c.C1088T	p.A363V	TCTGAGGCCTGGC	.	PASS	Atlas-SNP
SYT2	127833	hgsc.bcm.edu	37	1	202574784	202574784	+	Silent	SNP	G	G	A	rs1968583	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	239	108	261	1	0.451883	0.00383142	G|0.596;A|0.404	0.404	strong	.	SYT2	51	.	NM_177402	exon2	c.C117T	p.S39S	CTCCTGGCTCTCC	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36869769	36869769	+	Missense_Mutation	SNP	C	C	T	rs41282824	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	103	194	0	0.474654	0	C|0.961;T|0.039	0.039	strong	KIAA1755,colon,carcinoma,0,1	KIAA1755	145	1	NM_001029864	exon3	c.G764A	p.R255Q	CCACACCGGGCTT	.	PASS	Atlas-SNP
FAM131C	348487	hgsc.bcm.edu	37	1	16385131	16385131	+	Missense_Mutation	SNP	C	C	A	rs1832151	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	485	168	442	0	0.346392	0	C|0.837;A|0.163	0.163	strong	.	FAM131C	21	.	NM_182623	exon7	c.G644T	p.S215I	GAGGGGCTGGGCG	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	7	91	1	0.0886076	0.010989	.	.	none	KRTAP4-5,NS,carcinoma,0,4	KRTAP4-5	34	4	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	scavenged	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	37	17	6441376	6441376	+	Missense_Mutation	SNP	G	G	A	rs28493751	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	106	174	1	0.53	0.00574713	G|0.926;A|0.074	0.074	strong	PITPNM3,brain,glioma,0,1	PITPNM3	91	1	NM_031220	exon2	c.C49T	p.P17S	GCCAGGGGGCACC	.	scavenged	Atlas-SNP
DBH	1621	hgsc.bcm.edu	37	9	136522274	136522274	+	Missense_Mutation	SNP	C	C	T	rs6271	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	66	161	0	0.423077	0	C|0.956;T|0.044	0.044	strong	.	DBH	86	.	NM_000787	exon11	c.C1645T	p.R549C	TTCAACCGCGACG	.	PASS	Atlas-SNP
FAM71F2	346653	hgsc.bcm.edu	37	7	128315791	128315791	+	Silent	SNP	C	C	G	rs61738927	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	41	37	0	0.569444	0	C|0.679;G|0.321	0.321	strong	.	FAM71F2	19	.	NM_001012454	exon2	c.C243G	p.V81V	CGGGGTCACCTCC	.	PASS	Atlas-SNP
WWP2	11060	hgsc.bcm.edu	37	16	69967897	69967897	+	Silent	SNP	T	T	C	rs2270841	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	66	147	0	0.458333	0	T|0.194;C|0.806	0.806	strong	WWP2,NS,carcinoma,0,1	WWP2	88	1	NM_001270454	exon17	c.T1707C	p.H569H	GTCTCATGAGGTG	.	PASS	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	37	15	29416901	29416901	+	Missense_Mutation	SNP	A	A	G	rs2279482	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	22	41	0	0.5	0	A|0.843;G|0.157	0.157	strong	.	FAM189A1	20	.	NM_015307	exon10	c.T1292C	p.V431A	CCAGGCACAGCCT	.	PASS	Atlas-SNP
ACOT12	134526	hgsc.bcm.edu	37	5	80631642	80631642	+	Missense_Mutation	SNP	C	C	T	rs10371	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	81	189	0	0.378505	0	C|0.852;T|0.148	0.148	strong	.	ACOT12	57	.	NM_130767	exon12	c.G1207A	p.A403T	GATAAGCCAAATG	.	PASS	Atlas-SNP
PRKCD	5580	hgsc.bcm.edu	37	3	53213657	53213657	+	Silent	SNP	T	T	C	rs2230493	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	68	214	0	0.390805	0	T|0.897;C|0.103	0.103	strong	.	PRKCD	124	.	NM_212539	exon3	c.T180C	p.D60D	GTTCGATGCCCAC	.	PASS	Atlas-SNP
CPNE3	8895	hgsc.bcm.edu	37	8	87540872	87540872	+	Silent	SNP	G	G	A	rs10956871	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	47	102	0	0.516484	0	G|0.775;A|0.225	0.225	strong	.	CPNE3	65	.	NM_003909	exon3	c.G99A	p.L33L	TGTGTTGTTTTTG	.	PASS	Atlas-SNP
NPHP4	261734	hgsc.bcm.edu	37	1	5937327	5937327	+	Silent	SNP	C	C	T	rs3747990	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	200	105	241	0	0.525	0	C|0.906;T|0.094	0.094	strong	.	NPHP4	119	.	NM_015102	exon20	c.G2643A	p.A881A	CACGTCCGCCAGC	.	PASS	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	37	18	9887877	9887877	+	Silent	SNP	G	G	A	rs34362649	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	88	165	0	0.54321	0	G|0.960;A|0.040	0.040	strong	.	TXNDC2	168	.	NM_001098529	exon2	c.G1401A	p.G467G	GGCCGGGGAGAGG	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51917968	51917968	+	Silent	SNP	T	T	G	rs4715271	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	24	83	0	0.375	0	T|0.921;G|0.079	0.079	strong	PKHD1_ENST00000340994,NS,malignant_melanoma,-1,4	PKHD1	927	4	NM_170724	exon21	c.A2046C	p.P682P	CAGCACTGGGGAG	.	PASS	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	37	10	25701316	25701316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	2	155	0	0.0118343	0	.	.	none	GPR158,NS,carcinoma,0,2	GPR158	255	2	NM_020752	exon4	c.C1249T	p.R417X	TATTTACGACTTG	.	scavenged	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	37	7	4841318	4841318	+	Silent	SNP	G	G	A	rs6945581	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	73	110	0	0.489933	0	G|0.861;A|0.139	0.139	strong	RADIL,brain,glioma,0,2	RADIL	110	2	NM_018059	exon12	c.C2808T	p.N936N	GAGTCCGTTCCTC	.	PASS	Atlas-SNP
TSHR	7253	hgsc.bcm.edu	37	14	81575005	81575005	+	Missense_Mutation	SNP	C	C	A	rs3783941	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	80	104	0	1	0	C|0.384;A|0.616	0.616	strong	.	TSHR	462	.	NM_001142626	exon9	c.C805A	p.R269S	GCCCCACGCTCCA	.	PASS	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	37	X	8504833	8504833	+	Missense_Mutation	SNP	C	C	T	rs808119	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	60	66	0	1	0	C|0.447;T|0.553	0.553	strong	.	KAL1	78	.	NM_000216	exon11	c.G1600A	p.V534I	AGCCAACAGGCTT	.	PASS	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	37	2	10095185	10095185	+	Silent	SNP	T	T	C	rs16867251	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	92	164	0	0.582278	0	T|0.810;C|0.190	0.190	strong	.	GRHL1	95	.	NM_198182	exon2	c.T162C	p.D54D	TGGAGATGAAGAC	.	PASS	Atlas-SNP
ATL2	64225	hgsc.bcm.edu	37	2	38604351	38604351	+	Missense_Mutation	SNP	A	A	G	rs3731847	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	9	44	0	0.290323	0	A|0.523;G|0.477	0.477	strong	.	ATL2	49	.	NM_001135673	exon1	c.T52C	p.W18R	GGCGCCACAGCCC	.	PASS	Atlas-SNP
CPNE7	27132	hgsc.bcm.edu	37	16	89657630	89657630	+	Missense_Mutation	SNP	C	C	G	rs377056293	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	34	70	0	0.465753	0	.	.	alt	.	CPNE7	56	.	NM_014427	exon15	c.C1489G	p.R497G	GTGGCACGCGTGG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306817	1306817	+	Missense_Mutation	SNP	G	G	A	rs3993983	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	391	106	298	0	0.2711	0	G|0.999;A|0.001	0.001	weak	TPSD1,trunk,malignant_melanoma,0,1	TPSD1	47	1	NM_012217	exon3	c.G274A	p.A92T	CTGGCCGCCCTCA	.	PASS	Atlas-SNP
SF3A3	10946	hgsc.bcm.edu	37	1	38449910	38449910	+	Silent	SNP	T	T	C	rs11210870	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	34	70	0	0.395349	0	T|0.718;C|0.282	0.282	strong	.	SF3A3	37	.	NM_006802	exon6	c.A399G	p.E133E	TCCCTCTTCATCT	.	PASS	Atlas-SNP
TCFL5	10732	hgsc.bcm.edu	37	20	61488785	61488785	+	Silent	SNP	T	T	C	rs2294996	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	53	134	0	0.430894	0	A|0.005;C|0.255	0.255	strong	.	TCFL5	43	.	NM_006602	exon4	c.A1200G	p.Q400Q	CCTACGTTGAGAC	.	PASS	Atlas-SNP
POP1	10940	hgsc.bcm.edu	37	8	99146261	99146261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	39	70	0	0.534247	0	.	.	none	POP1,NS,carcinoma,0,1	POP1	85	1	NM_001145860	exon6	c.A820G	p.T274A	ATAGACACAGGTA	.	PASS	Atlas-SNP
MGAT5B	146664	hgsc.bcm.edu	37	17	74921072	74921072	+	Silent	SNP	G	G	C	rs3889145	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	38	89	0	0.404255	0	G|0.785;C|0.215	0.215	strong	MGAT5B,NS,carcinoma,0,2	MGAT5B	98	2	NM_198955	exon8	c.G1083C	p.R361R	AGGCCGGGGAAGC	.	PASS	Atlas-SNP
TTLL7	79739	hgsc.bcm.edu	37	1	84372060	84372060	+	Silent	SNP	G	G	A	rs41301084	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	87	132	0	0.508772	0	G|0.985;A|0.015	0.015	strong	.	TTLL7	93	.	NM_024686	exon17	c.C2079T	p.I693I	AAACCGGATCTTC	.	PASS	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	37	11	77409568	77409568	+	Silent	SNP	T	T	C	rs4945203	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	338	170	312	0	0.502959	0	T|0.813;C|0.187	0.187	strong	.	RSF1	105	.	NM_016578	exon7	c.A2679G	p.P893P	TTTGCATGGTTCA	.	PASS	Atlas-SNP
PGLYRP4	57115	hgsc.bcm.edu	37	1	153313044	153313044	+	Missense_Mutation	SNP	C	C	T	rs12063091	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	19	29	0	0.513514	0	C|0.923;T|0.077	0.077	strong	PGLYRP4,NS,carcinoma,0,1	PGLYRP4	45	1	NM_020393	exon7	c.G637A	p.V213I	GGACAACGCCGGG	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	37	14	102909991	102909991	+	Silent	SNP	C	C	T	rs17100923	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	27	44	0	0.5625	0	C|0.899;T|0.101	0.101	strong	.	TECPR2	114	.	NM_001172631	exon12	c.C2760T	p.S920S	TCTGAGCGTGGAT	.	PASS	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	37	14	23312594	23312594	+	Missense_Mutation	SNP	G	G	A	rs1042704	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	29	62	0	0.5	0	G|0.873;A|0.127	0.127	strong	.	MMP14	40	.	NM_004995	exon5	c.G817A	p.D273N	CTGCCCGATGATG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105411700	105411700	+	Missense_Mutation	SNP	A	A	G	rs4264326	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	209	203	1	1	0.00492611	A|0.454;G|0.546	0.546	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,2	AHNAK2	719	2	NM_138420	exon7	c.T10088C	p.V3363A	AGGTCCACAGAAG	.	PASS	Atlas-SNP
OR1K1	392392	hgsc.bcm.edu	37	9	125562527	125562527	+	Silent	SNP	T	T	C	rs10985782	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	99	207	1	0.490099	0.00483092	T|0.876;C|0.124	0.124	strong	OR1K1,NS,carcinoma,0,1	OR1K1	34	1	NM_080859	exon1	c.T126C	p.G42G	CCTGGGTAATGGA	.	PASS	Atlas-SNP
TMEM101	84336	hgsc.bcm.edu	37	17	42092267	42092267	+	Silent	SNP	C	C	T	rs35301047	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	102	223	0	0.419753	0	C|0.988;T|0.012	0.012	strong	.	TMEM101	18	.	NM_032376	exon1	c.G54A	p.L18L	CGAACCCAACTGC	.	PASS	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	37	X	8538659	8538659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	218	9	166	0	0.0412844	0	.	.	none	.	KAL1	78	.	NM_000216	exon7	c.T943G	p.W315G	GATCCCAAACTAT	.	PASS	Atlas-SNP
MFI2	4241	hgsc.bcm.edu	37	3	196742290	196742290	+	Silent	SNP	T	T	C	rs9855410	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	71	126	0	0.496504	0	T|0.712;C|0.288	0.288	strong	.	MFI2	88	.	NM_005929	exon9	c.A1179G	p.P393P	GATCTCTGGCTTG	.	PASS	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	37	17	3844787	3844787	+	Silent	SNP	C	C	G	rs1800912	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	88	97	0	1	0	C|0.787;G|0.213	0.213	strong	ATP2A3,NS,carcinoma,-2,1	ATP2A3	148	1	NM_174956	exon13	c.G1707C	p.A569A	TGGGGGCGCGTCC	.	PASS	Atlas-SNP
ZNF518B	85460	hgsc.bcm.edu	37	4	10445207	10445207	+	Missense_Mutation	SNP	T	T	C	rs75487798	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	62	137	0	0.3875	0	T|0.978;C|0.022	0.022	strong	.	ZNF518B	116	.	NM_053042	exon3	c.A2746G	p.I916V	GAAAAATTGAAGG	.	PASS	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	37	19	1008879	1008879	+	Silent	SNP	G	G	C	rs2285907	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	32	64	0	0.551724	0	G|0.891;C|0.109	0.109	strong	.	GRIN3B	46	.	NM_138690	exon8	c.G2655C	p.T885T	CAACACGGAGCCA	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	871987	871987	+	Silent	SNP	G	G	A	rs78047294	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	37	101	0	0.393617	0	G|0.771;A|0.229	0.229	strong	.	MED16	61	.	NM_005481	exon12	c.C2037T	p.T679T	ATCCGAGGTGGCC	.	PASS	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	37	9	116346287	116346287	+	Silent	SNP	C	C	T	rs3810927	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	111	77	0	1	0	C|0.832;T|0.168	0.168	strong	RGS3_ENST00000374140,NS,carcinoma,0,2	RGS3	251	2	NM_144488	exon21	c.C2595T	p.Y865Y	CACCTACAGCCAG	.	PASS	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	37	12	130387850	130387850	+	Missense_Mutation	SNP	T	T	A	rs142888394	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	95	166	0	0.527778	0	T|0.996;A|0.004	0.004	strong	.	TMEM132D	299	.	NM_133448	exon1	c.A35T	p.H12L	GACCAGTGGTGCC	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	37	5	176017639	176017639	+	Missense_Mutation	SNP	C	C	A	rs17078347	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	404	199	335	1	0.492574	0.00298507	C|0.804;A|0.196	0.196	strong	.	CDHR2	152	.	NM_017675	exon28	c.C3490A	p.L1164M	GCTTTGCTGCTGG	.	PASS	Atlas-SNP
SLC1A5	6510	hgsc.bcm.edu	37	19	47278938	47278938	+	Silent	SNP	G	G	A	rs1060043	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	76	164	0	0.45509	0	G|0.933;A|0.067	0.067	strong	.	SLC1A5	31	.	NM_005628	exon8	c.C1455T	p.Y485Y	GTCCACGTAATTT	.	PASS	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	37	15	68695349	68695349	+	Silent	SNP	G	G	A	rs11629460	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	49	74	0	0.505155	0	G|0.934;A|0.066	0.066	strong	.	ITGA11	110	.	NM_001004439	exon2	c.C72T	p.N24N	GTCCATGTTGAAG	.	PASS	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	37	3	184049143	184049143	+	Silent	SNP	C	C	T	rs76779558	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	38	96	0	0.413043	0	C|0.983;T|0.017	0.017	strong	.	EIF4G1	151	.	NM_001194946	exon30	c.C4272T	p.V1424V	ATTCGTCGCTGAA	.	PASS	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	37	19	38847431	38847431	+	Silent	SNP	T	T	C	rs2286475	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	88	195	0	0.483516	0	T|0.735;C|0.265	0.265	strong	.	CATSPERG	121	.	NM_021185	exon11	c.T1245C	p.T415T	GTATACTCTACTG	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17157572	17157572	+	Silent	SNP	G	G	A	rs41289313	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	76	176	0	0.463415	0	G|0.935;A|0.065	0.065	strong	CUBN,NS,carcinoma,0,1	CUBN	515	1	NM_001081	exon7	c.C618T	p.Y206Y	GGGTCCGTACGTC	.	PASS	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	37	6	154360655	154360655	+	Silent	SNP	C	C	T	rs41292890	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	42	78	0	0.525	0	C|0.998;T|0.002	0.002	strong	.	OPRM1	241	.	NM_001145279	exon3	c.C255T	p.S85S	GCACAGCGGTGCC	.	PASS	Atlas-SNP
MCPH1	79648	hgsc.bcm.edu	37	8	6303025	6303025	+	Silent	SNP	G	G	A	rs2584	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	77	165	1	0.487342	0.00606061	G|0.814;A|0.186	0.186	strong	MCPH1,caecum,carcinoma,+1,1	MCPH1	65	1	NM_001172574	exon8	c.G1782A	p.T594T	GGAGACGTCTACA	.	scavenged	Atlas-SNP
C2orf43	60526	hgsc.bcm.edu	37	2	20974586	20974586	+	Missense_Mutation	SNP	C	C	T	rs114010802	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	102	203	0	0.504951	0	C|0.993;T|0.007	0.007	strong	.	C2orf43	28	.	NM_021925	exon4	c.G452A	p.R151Q	GGGACTCGCTTCA	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	37	6	168376847	168376847	+	Silent	SNP	C	C	G	rs77867907	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	32	222	0	0.169312	0	C|0.500;G|0.500	0.500	weak	.	.	.	.	NM_001129895	exon1	c.G486C	p.L162L	GGGGAGCAGGAGG	.	PASS	Atlas-SNP
FAM83E	54854	hgsc.bcm.edu	37	19	49107039	49107039	+	Silent	SNP	G	G	T	rs201027346	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	32	48	0	0.507937	0	G|0.999;T|0.001	0.001	weak	.	FAM83E	34	.	NM_017708	exon4	c.C888A	p.P296P	TTTCTGGGGGGGC	.	PASS	Atlas-SNP
USP34	9736	hgsc.bcm.edu	37	2	61647901	61647901	+	Silent	SNP	A	A	G	rs778155	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	125	106	0	1	0	A|0.679;G|0.320	0.320	strong	USP34,colon,carcinoma,0,1	USP34	334	1	NM_014709	exon2	c.T111C	p.Y37Y	ATTGATATAAGTA	.	PASS	Atlas-SNP
IBA57	200205	hgsc.bcm.edu	37	1	228362923	228362923	+	Silent	SNP	C	C	T	rs202126055	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	55	111	0	0.518868	0	C|0.999;T|0.001	0.001	weak	.	IBA57	22	.	NM_001010867	exon3	c.C780T	p.Y260Y	CTGCTACATTGGC	.	PASS	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	37	11	102575442	102575442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	38	80	0	0.417582	0	.	.	none	.	MMP27	84	.	NM_022122	exon2	c.G167A	p.R56K	AGACTCCTATTCT	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76521121	76521121	+	Silent	SNP	T	T	C	rs17729253	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	48	77	0	0.979592	0	T|0.830;C|0.170	0.170	strong	.	DNAH17	347	.	NM_173628	exon25	c.A3834G	p.L1278L	CTTCAGTAGGCGG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1081438	1081438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	2	196	0	0.0101523	0	.	.	none	MUC2_ENST00000441003,colon,carcinoma,-1,2	MUC2	614	2	NM_002457	exon12	c.C1456T	p.R486C	GTCTTCCGCCCGT	.	scavenged	Atlas-SNP
GDAP1	54332	hgsc.bcm.edu	37	8	75274141	75274141	+	Silent	SNP	T	T	G	rs11554166	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	12	36	0	0.444444	0	T|0.753;G|0.247	0.247	strong	.	GDAP1	36	.	NM_018972	exon4	c.T507G	p.S169S	AGAGTCTGAGCTG	.	PASS	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	37	12	52984620	52984620	+	Silent	SNP	C	C	T	rs12818575	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	47	128	0	0.412281	0	C|0.812;T|0.188	0.188	strong	.	KRT72	70	.	NM_001146225	exon6	c.G1089A	p.Q363Q	ACCCACCTGCTTC	.	PASS	Atlas-SNP
C15orf52	388115	hgsc.bcm.edu	37	15	40630073	40630073	+	Missense_Mutation	SNP	G	G	A	rs78494549	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	34	51	0	0.539683	0	G|0.937;A|0.063	0.063	strong	.	C15orf52	47	.	NM_207380	exon6	c.C667T	p.R223W	CCGGCCGGCTCCA	.	PASS	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	37	11	5020509	5020509	+	Silent	SNP	C	C	T	rs11035066	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	366	193	324	0	0.527322	0	C|0.718;T|0.282	0.282	strong	.	OR51L1	60	.	NM_001004755	exon1	c.C297T	p.C99C	TGCTTGCTATGCT	.	PASS	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	37	1	52703491	52703491	+	Missense_Mutation	SNP	G	G	C	rs35385323	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	73	89	0	0.489933	0	G|0.935;C|0.065	0.065	strong	.	ZFYVE9	131	.	NM_007323	exon4	c.G402C	p.K134N	AGAGAAGAAATGT	.	PASS	Atlas-SNP
ALS2CR12	130540	hgsc.bcm.edu	37	2	202215492	202215492	+	Missense_Mutation	SNP	C	C	G	rs13014235	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	38	76	0	0.475	0	C|0.340;G|0.660	0.660	strong	.	ALS2CR12	54	.	NM_001127391	exon3	c.G127C	p.V43L	CTGGTACAAGAGG	.	PASS	Atlas-SNP
UNKL	64718	hgsc.bcm.edu	37	16	1416355	1416355	+	Silent	SNP	C	C	T	rs75956141	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	31	58	0	0.449275	0	C|0.982;T|0.018	0.018	strong	.	UNKL	46	.	NM_001193388	exon15	c.G1938A	p.R646R	CCGCTCCCGGCAG	.	PASS	Atlas-SNP
ZKSCAN7	55888	hgsc.bcm.edu	37	3	44607013	44607013	+	Missense_Mutation	SNP	T	T	C	rs13081859	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	46	125	0	0.403509	0	T|0.732;C|0.268	0.268	strong	.	.	.	.	NM_018651	exon3	c.T458C	p.F153S	TGCATTTTGAGGA	.	PASS	Atlas-SNP
CUL2	8453	hgsc.bcm.edu	37	10	35302705	35302705	+	Silent	SNP	C	C	T	rs12830	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	20	8	25	0	0.4	0	T|0.272;G|0.012	0.272	strong	CUL2,colon,carcinoma,-1,1	CUL2	63	1	NM_001198778	exon19	c.G1968A	p.S656S	TGAAAACGAAGAT	.	PASS	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65242044	65242044	+	Silent	SNP	C	C	T	rs184528	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	148	114	0	0.986667	0	C|0.642;T|0.358	0.358	strong	.	SPTB	378	.	NM_001024858	exon22	c.G4641A	p.A1547A	CTCCGCCGCCTCC	.	PASS	Atlas-SNP
RAP1GAP	5909	hgsc.bcm.edu	37	1	21976289	21976289	+	Silent	SNP	C	C	T	rs141127873	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	58	181	0	0.414286	0	C|0.996;T|0.004	0.004	strong	.	RAP1GAP	119	.	NM_001145658	exon2	c.G45A	p.G15G	GTCCACCCTGAAA	.	PASS	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	37	9	139835725	139835725	+	Missense_Mutation	SNP	C	C	T	rs374757784		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	13	16	0	0.541667	0	.	.	weak	.	FBXW5	36	.	NM_018998	exon8	c.G1435A	p.V479I	TGCTGACGTCCAG	.	PASS	Atlas-SNP
PML	5371	hgsc.bcm.edu	37	15	74328116	74328116	+	Missense_Mutation	SNP	A	A	G	rs743580	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	43	77	0	0.511905	0	A|0.492;C|0.000;G|0.508	0.508	strong	.	PML	169	.	NM_033239	exon8	c.A2314G	p.S772G	GGGGAAAGCAGAG	.	PASS	Atlas-SNP
ABTB1	80325	hgsc.bcm.edu	37	3	127395817	127395817	+	Silent	SNP	G	G	A	rs35834653	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	75	95	0	0.539568	0	G|0.962;A|0.038	0.038	strong	.	ABTB1	36	.	NM_172027	exon7	c.G534A	p.L178L	CCGCCTGGACATT	.	PASS	Atlas-SNP
FTSJD1	55783	hgsc.bcm.edu	37	16	71319539	71319539	+	Silent	SNP	C	C	T	rs3826247	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	51	144	0	0.435897	0	C|0.460;T|0.540	0.540	strong	.	FTSJD1	70	.	NM_018348	exon3	c.G285A	p.A95A	TTTCCCCGCTTTA	.	PASS	Atlas-SNP
AKD1	221264	hgsc.bcm.edu	37	6	109827716	109827716	+	Missense_Mutation	SNP	C	C	T	rs2277114	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	56	171	0	0.491228	0	C|0.610;T|0.390	0.390	strong	.	AKD1	223	.	NM_001145128	exon35	c.G4663A	p.V1555I	CAGCTACAATTTG	.	PASS	Atlas-SNP
EFNA3	1944	hgsc.bcm.edu	37	1	155058663	155058663	+	Missense_Mutation	SNP	G	G	A	rs17723260	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	115	235	0	0.532407	0	G|0.911;A|0.089	0.089	strong	EFNA3,colon,carcinoma,0,1	EFNA3	15	1	NM_004952	exon4	c.G568A	p.V190M	CCCAATGTGAAGA	.	PASS	Atlas-SNP
SPATA22	84690	hgsc.bcm.edu	37	17	3343519	3343519	+	Silent	SNP	T	T	C	rs17822627	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	385	180	358	0	0.467532	0	T|0.774;C|0.226	0.226	strong	.	SPATA22	49	.	NM_032598	exon9	c.A1014G	p.E338E	TTTTTGTTCAGAA	.	PASS	Atlas-SNP
MIA2	117153	hgsc.bcm.edu	37	14	39722023	39722023	+	Missense_Mutation	SNP	G	G	C	rs10134365	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	21	49	0	0.428571	0	G|0.714;C|0.286	0.286	strong	MIA2,rectum,carcinoma,0,1	MIA2	82	1	NM_054024	exon5	c.G1639C	p.D547H	TCTAAAGATAGTG	.	PASS	Atlas-SNP
SLC18A1	6570	hgsc.bcm.edu	37	8	20038466	20038466	+	Missense_Mutation	SNP	T	T	G	rs2270641	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	39	35	0	1	0	A|0.013;C|0.004	.	strong	SLC18A1,NS,lymphoid_neoplasm,0,1	SLC18A1	68	1	NM_001142324	exon3	c.A10C	p.T4P	GAATGGTCCGGAG	.	PASS	Atlas-SNP
HIST1H1T	3010	hgsc.bcm.edu	37	6	26107790	26107790	+	Missense_Mutation	SNP	G	G	T	rs198845	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	263	129	306	0	0.490494	0	G|0.742;T|0.258	0.258	strong	.	HIST1H1T	40	.	NM_005323	exon1	c.C532A	p.Q178K	TCTGCTGTTGCTT	.	PASS	Atlas-SNP
DMWD	1762	hgsc.bcm.edu	37	19	46289509	46289509	+	Silent	SNP	G	G	A	rs11545326	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	30	30	0	0.384615	0	G|0.917;A|0.083	0.083	strong	.	DMWD	46	.	NM_004943	exon3	c.C1245T	p.G415G	CGGGGCGCCCCCG	.	PASS	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	37	20	44578674	44578674	+	Silent	SNP	T	T	A	rs16990951	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	41	95	0	0.476744	0	T|0.821;A|0.179	0.179	strong	.	ZNF335	115	.	NM_022095	exon23	c.A3522T	p.P1174P	CCGCTCTGGGCCC	.	PASS	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	37	12	53217701	53217701	+	Silent	SNP	C	C	A	rs10876354	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	91	0	1	0	C|0.550;A|0.450	0.450	strong	.	KRT79	78	.	NM_175834	exon6	c.G1116T	p.L372L	CCCCTGCAGCCTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417103	105417103	+	Missense_Mutation	SNP	G	G	A	rs61996045	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	241	241	232	0	1	0	G|0.702;A|0.298	0.298	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C4685T	p.P1562L	CCCTCTGGGAGTT	.	PASS	Atlas-SNP
IL25	64806	hgsc.bcm.edu	37	14	23844979	23844979	+	Silent	SNP	C	C	A	rs79877597	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	190	188	0	0.994764	0	A|0.271;C|0.727;T|0.002	0.271	strong	IL25,NS,carcinoma,0,1	IL25	21	1	NM_022789	exon2	c.C424A	p.R142R	TTCTACCGGCGGC	.	PASS	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	37	16	10788219	10788219	+	Missense_Mutation	SNP	G	G	A	rs141349037	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	26	77	0	0.325	0	G|0.999;A|0.001	0.001	strong	.	TEKT5	66	.	NM_144674	exon1	c.C512T	p.T171M	TTGACCGTCTCCA	.	PASS	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	37	20	46385955	46385955	+	Silent	SNP	C	C	T	rs61730618	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	29	70	0	0.391892	0	C|0.982;T|0.018	0.018	strong	.	SULF2	131	.	NM_001161841	exon2	c.G153A	p.T51T	GTCGTCCGTCAGC	.	PASS	Atlas-SNP
HTRA4	203100	hgsc.bcm.edu	37	8	38845602	38845602	+	Silent	SNP	T	T	G	rs62504414	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	40	74	0	0.465116	0	T|0.950;G|0.050	0.050	strong	.	HTRA4	25	.	NM_153692	exon9	c.T1416G	p.P472P	CATACCTGAAACA	.	PASS	Atlas-SNP
HDHD3	81932	hgsc.bcm.edu	37	9	116136155	116136155	+	Silent	SNP	G	G	A	rs17765613	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	38	78	0	0.520548	0	G|0.965;A|0.035	0.035	strong	.	HDHD3	10	.	NM_031219	exon2	c.C480T	p.S160S	AGCCTCGGAGGTC	.	PASS	Atlas-SNP
DNASE1L3	1776	hgsc.bcm.edu	37	3	58191266	58191266	+	Silent	SNP	C	C	T	rs2070117	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	55	125	0	0.491071	0	C|0.747;T|0.253	0.253	strong	.	DNASE1L3	36	.	NM_004944	exon3	c.G252A	p.T84T	GTTGTACGTTATG	.	PASS	Atlas-SNP
OTOP3	347741	hgsc.bcm.edu	37	17	72943126	72943126	+	Silent	SNP	G	G	A	rs8066909	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	40	93	0	0.487805	0	G|0.683;A|0.317	0.317	strong	OTOP3,NS,carcinoma,0,1	OTOP3	64	1	NM_178233	exon6	c.G1176A	p.A392A	CCTGGCGGGCACA	.	PASS	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	37	17	80159566	80159566	+	Silent	SNP	T	T	C	rs8072670	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	122	188	0	0.482213	0	T|0.203;C|0.797	0.797	strong	CCDC57_ENST00000389641,NS,carcinoma,-1,2	CCDC57	102	2	NM_198082	exon2	c.A255G	p.E85E	GGCCTCTTCCCAC	.	PASS	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	37	11	68840412	68840412	+	Silent	SNP	C	C	G	rs1466220	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	69	113	0	0.985714	0	C|0.563;G|0.437	0.437	strong	TPCN2,NS,carcinoma,+2,1	TPCN2	63	1	NM_139075	exon13	c.C1173G	p.L391L	TCTGCTCTCAGCT	.	PASS	Atlas-SNP
WDSUB1	151525	hgsc.bcm.edu	37	2	160112881	160112881	+	Missense_Mutation	SNP	G	G	T	rs7591849	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	44	94	0	0.444444	0	G|0.422;T|0.578	0.578	strong	WDSUB1,colon,carcinoma,+1,2	WDSUB1	39	2	NM_152528	exon9	c.C958A	p.R320S	CTGTGCGCCTTGC	.	PASS	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	37	19	22498943	22498943	+	Silent	SNP	T	T	C	rs8104705	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	12	14	0	1	0	T|0.467;C|0.533	0.533	strong	.	ZNF729	78	.	NM_001242680	exon4	c.T2724C	p.C908C	ACCCTGTAAATGT	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72344238	72344238	+	Silent	SNP	C	C	T	rs17817969	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	43	101	0	0.457447	0	C|0.907;T|0.093	0.093	strong	.	ZNF407	231	.	NM_001146190	exon1	c.C1263T	p.L421L	TATTCTCGTGTTG	.	PASS	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	37	1	240975229	240975229	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	30	69	0	0.394737	0	.	.	none	RGS7_ENST00000366565,right_upper_lobe,carcinoma,-1,2	RGS7	308	2	NM_002924	exon14	c.G1071A	p.S357S	ATTTTCCGAGCTG	.	PASS	Atlas-SNP
DUSP12	11266	hgsc.bcm.edu	37	1	161721707	161721707	+	Silent	SNP	C	C	T	rs1063178	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	291	129	291	0	0.443299	0	C|0.639;N|0.000	.	strong	.	DUSP12	20	.	NM_007240	exon3	c.C510T	p.Y170Y	GGGATACGAAGTG	.	PASS	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	37	5	231111	231111	+	Silent	SNP	T	T	C	rs1126417	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	548	294	512	2	0.536496	0.00390625	T|0.273;C|0.727	0.727	strong	.	SDHA	80	.	NM_004168	exon7	c.T891C	p.P297P	CCACCCTACAGGT	.	PASS	Atlas-SNP
C3orf33	285315	hgsc.bcm.edu	37	3	155481609	155481609	+	Silent	SNP	G	G	A	rs7653384	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	96	0	1	0	G|0.508;A|0.492	0.492	strong	.	C3orf33	18	.	NM_173657	exon6	c.C453T	p.Y151Y	TGTCCAGTAGATT	.	PASS	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	37	19	55673164	55673164	+	Silent	SNP	T	T	C	rs56726774	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	12	42	0	0.387097	0	T|0.882;C|0.118	0.118	strong	.	.	.	.	NM_001256714	exon6	c.A714G	p.V238V	GCGGAATACGGCC	.	PASS	Atlas-SNP
NSUN4	387338	hgsc.bcm.edu	37	1	46806550	46806550	+	Missense_Mutation	SNP	C	C	T	rs41293277	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	58	99	0	0.552381	0	C|0.790;T|0.210	0.210	strong	.	NSUN4	26	.	NM_199044	exon1	c.C52T	p.L18F	GTGGACCTCGCGA	.	PASS	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	37	3	174814920	174814920	+	Missense_Mutation	SNP	A	A	G	rs9836841	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	47	104	0	0.474747	0	A|0.617;G|0.383	0.383	strong	.	NAALADL2	86	.	NM_207015	exon2	c.A384G	p.I128M	AAAAATACTTTGC	.	PASS	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	37	4	111409705	111409705	+	Missense_Mutation	SNP	T	T	C	rs1126483	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	24	10	31	0	0.416667	0	T|0.471;C|0.529	0.529	strong	ENPEP,NS,carcinoma,0,1	ENPEP	149	1	NM_001977	exon2	c.T653C	p.V218A	GCATAGTGGCCAC	.	scavenged	Atlas-SNP
ELAVL3	1995	hgsc.bcm.edu	37	19	11569316	11569316	+	Silent	SNP	G	G	A	rs2242112	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	48	106	0	0.475248	0	G|0.956;A|0.044	0.044	strong	ELAVL3,colon,carcinoma,0,1	ELAVL3	58	1	NM_032281	exon4	c.C444T	p.Y148Y	GCGGCCGTACTGG	.	PASS	Atlas-SNP
ST3GAL5	8869	hgsc.bcm.edu	37	2	86088311	86088311	+	Missense_Mutation	SNP	T	T	C	rs1138484	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	38	86	0	0.413043	0	T|0.829;C|0.171	0.171	strong	.	ST3GAL5	51	.	NM_003896	exon3	c.A311G	p.H104R	TTTACATGGTCAG	.	PASS	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	37	15	42171462	42171462	+	Missense_Mutation	SNP	C	C	T	rs12708402	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	24	50	0	0.4	0	C|0.800;T|0.200	0.200	strong	.	SPTBN5	171	.	NM_016642	exon16	c.G3073A	p.V1025I	ACTTTACGACCAC	.	PASS	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	37	1	205810947	205810947	+	Missense_Mutation	SNP	C	C	T	rs11240573	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	321	155	298	0	0.482866	0	C|0.906;T|0.094	0.094	strong	.	PM20D1	56	.	NM_152491	exon9	c.G1036A	p.G346R	TGACCCCTGCTTT	.	PASS	Atlas-SNP
FUT3	2525	hgsc.bcm.edu	37	19	5844792	5844792	+	Missense_Mutation	SNP	A	A	C	rs28362459	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	114	188	0	0.564356	0	A|0.832;C|0.168	0.168	strong	FUT3,NS,carcinoma,0,1	FUT3	30	1	NM_001097640	exon3	c.T59G	p.L20R	AATAGCAGTGCGG	.	PASS	Atlas-SNP
ZC3H12D	340152	hgsc.bcm.edu	37	6	149795522	149795522	+	Missense_Mutation	SNP	G	G	A	rs7747948	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	29	27	0	1	0	G|0.788;A|0.212	0.212	strong	.	ZC3H12D	21	.	NM_207360	exon2	c.C158T	p.P53L	GCAGCCGGGTGCT	.	PASS	Atlas-SNP
TPSB2	64499	hgsc.bcm.edu	37	16	1279574	1279574	+	Missense_Mutation	SNP	C	C	G	rs71384640		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	49	123	0	0.942308	0	G|1.000;|0.000	1.000	weak	.	TPSB2	8	.	NM_024164	exon3	c.G226C	p.V76L	GTCCCACGCAGTG	.	PASS	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	37	3	172835125	172835125	+	Missense_Mutation	SNP	T	T	C	rs1515442	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	106	242	2	0.471111	0.00826446	T|0.604;C|0.396	0.396	strong	SPATA16,NS,carcinoma,+2,1	SPATA16	111	1	NM_031955	exon2	c.A397G	p.M133V	CACCCATTTCATC	.	scavenged	Atlas-SNP
FAM175A	84142	hgsc.bcm.edu	37	4	84383810	84383810	+	Missense_Mutation	SNP	C	C	T	rs12642536	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	318	177	356	0	0.556604	0	C|0.642;T|0.358	0.358	strong	.	FAM175A	36	.	NM_139076	exon9	c.G1042A	p.A348T	CTAAGGCTTTATG	.	PASS	Atlas-SNP
TMCO4	255104	hgsc.bcm.edu	37	1	20009737	20009737	+	Silent	SNP	G	G	A	rs10917514	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	127	243	0	0.488462	0	G|0.888;A|0.112	0.112	strong	.	TMCO4	46	.	NM_181719	exon16	c.C1701T	p.S567S	GTCTCCGGATATG	.	PASS	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50936994	50936994	+	Silent	SNP	T	T	C	rs2229082	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	138	154	1	1	0.00649351	T|0.584;C|0.416	0.416	strong	.	DCC	360	.	NM_005215	exon20	c.T3108C	p.P1036P	TGATCCTATCCTC	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43924073	43924073	+	Missense_Mutation	SNP	T	T	C	rs12373123	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	107	98	0	0.990741	0	T|0.853;C|0.147	0.147	strong	.	.	.	.	NM_175882	exon1	c.T1801C	p.S601P	GATAGCTCCGAGG	.	PASS	Atlas-SNP
SPERT	220082	hgsc.bcm.edu	37	13	46288145	46288145	+	Missense_Mutation	SNP	A	A	G	rs7317245	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	8	5	0	0.347826	0	A|0.488;G|0.512	0.512	strong	.	SPERT	54	.	NM_152719	exon3	c.A985G	p.K329E	CTGCGGAAGATGG	.	PASS	Atlas-SNP
VMO1	284013	hgsc.bcm.edu	37	17	4689313	4689313	+	Missense_Mutation	SNP	G	G	C	rs2279961	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	32	115	0	0.376471	0	G|0.901;C|0.099	0.099	strong	.	VMO1	19	.	NM_182566	exon2	c.C230G	p.T77S	AGTGCAGTGTCGT	.	PASS	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79064080	79064080	+	Silent	SNP	G	G	A	rs11635931	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	28	61	0	0.491228	0	G|0.721;A|0.279	0.279	strong	.	ADAMTS7	142	.	NM_014272	exon15	c.C2223T	p.S741S	GTCCTCGCTCCGC	.	PASS	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	37	19	55673654	55673654	+	Silent	SNP	T	T	C	rs3848618	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	14	7	17	0	0.5	0	T|0.892;C|0.108	0.108	strong	C19orf51,rectum,carcinoma,0,1	.	.	1	NM_001256714	exon5	c.A531G	p.R177R	CTCGCTTCGCTCT	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214818215	214818215	+	Missense_Mutation	SNP	G	G	A	rs3748692	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	47	140	0	0.382114	0	G|0.924;A|0.076	0.076	strong	.	CENPF	321	.	NM_016343	exon13	c.G5302A	p.D1768N	CAGGAAGATATCC	.	PASS	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	50098739	50098739	+	Missense_Mutation	SNP	G	G	C	rs41283283	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	110	162	0	0.558376	0	G|0.957;C|0.043	0.043	strong	.	WDFY4	205	.	NM_020945	exon44	c.G7283C	p.G2428A	CCACGGGTGATGT	.	PASS	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93639973	93639973	+	Silent	SNP	G	G	C	rs2290888	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	78	150	0	0.438202	0	G|0.789;C|0.211	0.211	strong	.	SYK	132	.	NM_003177	exon10	c.G1302C	p.R434R	CGTGCGGATGATC	.	PASS	Atlas-SNP
ST3GAL4	6484	hgsc.bcm.edu	37	11	126278075	126278075	+	Silent	SNP	C	C	T	rs2230279	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	150	188	1	0.986842	0.00531915	C|0.657;T|0.343	0.343	strong	.	ST3GAL4	25	.	NM_001254757	exon7	c.C423T	p.Y141Y	CAAGTACGATGTG	.	PASS	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	37	2	182374534	182374534	+	Silent	SNP	A	A	G	rs1143674	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	27	29	0	1	0	A|0.407;G|0.593	0.593	strong	.	ITGA4	142	.	NM_000885	exon16	c.A1845G	p.T615T	AAAAACAGTAGGA	.	PASS	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139289825	139289825	+	Silent	SNP	A	A	G	rs4266763	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	93	201	0	0.479381	0	A|0.611;G|0.388	0.388	strong	.	SNAPC4	82	.	NM_003086	exon4	c.T396C	p.D132D	TTTGCCATCTTTC	.	PASS	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130103709	130103709	+	Missense_Mutation	SNP	G	G	A	rs1453241	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	60	104	0	0.555556	0	G|0.619;A|0.381	0.381	strong	.	COL6A5	205	.	NM_153264	exon5	c.G1363A	p.E455K	ATCCAGGAGAAAC	.	PASS	Atlas-SNP
TOR2A	27433	hgsc.bcm.edu	37	9	130495633	130495633	+	Missense_Mutation	SNP	C	C	G	rs564754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	36	66	0	0.537313	0	C|0.370;G|0.630	0.630	strong	.	TOR2A	26	.	NM_130459	exon3	c.G624C	p.W208C	GCCCCCCCACTGT	.	PASS	Atlas-SNP
GPC1	2817	hgsc.bcm.edu	37	2	241405528	241405528	+	Missense_Mutation	SNP	A	A	G	rs2228331	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	237	221	0	0.9875	0	A|0.294;G|0.706	0.706	strong	.	GPC1	32	.	NM_002081	exon9	c.A1498G	p.S500G	CTCTGCAGCCGGA	.	PASS	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	37	18	9886988	9886988	+	Missense_Mutation	SNP	C	C	T	rs34812912	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	53	112	0	0.469027	0	C|0.940;T|0.060	0.060	strong	.	TXNDC2	168	.	NM_001098529	exon2	c.C512T	p.P171L	TGAAGCCCAGCCA	.	PASS	Atlas-SNP
LAPTM4B	55353	hgsc.bcm.edu	37	8	98788261	98788261	+	Silent	SNP	G	G	T	rs2449508	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	13	39	0	0.448276	0	G|0.891;T|0.109	0.109	strong	LAPTM4B,rectum,carcinoma,0,1	LAPTM4B	26	1	NM_018407	exon1	c.G297T	p.T99T	CTGGACGCGGTTC	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	37	12	26809412	26809412	+	Silent	SNP	T	T	G	rs2230378	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	49	88	0	0.457944	0	T|0.946;G|0.054	0.054	strong	.	ITPR2	270	.	NM_002223	exon19	c.A2262C	p.T754T	CAGCTGTGTAGAA	.	PASS	Atlas-SNP
ATG14	22863	hgsc.bcm.edu	37	14	55864130	55864130	+	Silent	SNP	A	A	G	rs8003279	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	51	126	0	0.459459	0	A|0.760;G|0.240	0.240	strong	.	ATG14	36	.	NM_014924	exon2	c.T244C	p.L82L	GGCTTAACCTTTC	.	PASS	Atlas-SNP
COQ10B	80219	hgsc.bcm.edu	37	2	198327314	198327314	+	Silent	SNP	G	G	A	rs3754822	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	48	108	0	0.461538	0	G|0.833;A|0.167	0.167	strong	.	COQ10B	18	.	NM_025147	exon3	c.G306A	p.K102K	TTACAAGCATTTT	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	74	154	0	0.375635	0	.	.	weak	ZNF814,NS,carcinoma,0,3	ZNF814	93	3	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	PASS	Atlas-SNP
HHATL	57467	hgsc.bcm.edu	37	3	42735274	42735274	+	Silent	SNP	A	A	G	rs339697	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	42	77	0	0.488372	0	A|0.333;G|0.667	0.667	strong	.	HHATL	49	.	NM_020707	exon10	c.T1083C	p.A361A	GATCACAGCGGAA	.	PASS	Atlas-SNP
RAD51D	5892	hgsc.bcm.edu	37	17	33445549	33445549	+	Silent	SNP	G	G	A	rs9901455	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	44	54	0	0.60274	0	G|0.828;A|0.172	0.172	strong	.	RAD51D	53	.	NM_002878	exon3	c.C234T	p.S78S	GGCAGTGGAGGTC	.	PASS	Atlas-SNP
ATCAY	85300	hgsc.bcm.edu	37	19	3908272	3908272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	2	162	0	0.0136986	0	.	.	none	ATCAY_ENST00000450849,NS,carcinoma,-1,2	ATCAY	84	2	NM_033064	exon6	c.A551G	p.Y184C	GGTACTACGGCGA	.	scavenged	Atlas-SNP
TSPAN18	90139	hgsc.bcm.edu	37	11	44940828	44940828	+	Missense_Mutation	SNP	G	G	A	rs2291334	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	68	129	0	0.482269	0	G|0.711;A|0.289	0.289	strong	TSPAN18,colon,carcinoma,-2,1	TSPAN18	38	1	NM_130783	exon6	c.G397A	p.V133I	ACAGACGTCTTCT	.	PASS	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	37	19	54755923	54755923	+	Silent	SNP	A	A	G	rs12976868	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	97	191	0	0.505208	0	A|0.786;G|0.214	0.214	strong	.	LILRB5	176	.	NM_001081442	exon12	c.T1623C	p.D541D	CCGAGCATCCATC	.	PASS	Atlas-SNP
INSR	3643	hgsc.bcm.edu	37	19	7166376	7166376	+	Silent	SNP	C	C	T	rs2059806	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	31	64	0	0.462687	0	C|0.767;T|0.233	0.233	strong	INSR,NS,carcinoma,0,1	INSR	265	1	NM_000208	exon8	c.G1650A	p.A550A	ACCACACGCATCC	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	603826	603826	+	Silent	SNP	C	C	T	rs56170955	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	52	91	0	0.536082	0	C|0.835;T|0.165	0.165	strong	.	HCN2	36	.	NM_001194	exon2	c.C915T	p.F305F	CATCTTCCTTATC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280032	152280032	+	Missense_Mutation	SNP	T	T	C	rs71625200	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	324	166	229	1	0.512346	0.00436681	T|0.803;C|0.197	0.197	strong	FLG,larynx,carcinoma,+2,1	FLG	900	1	NM_002016	exon3	c.A7330G	p.K2444E	CCTGCTTGTGGTG	.	PASS	Atlas-SNP
CCDC109B	55013	hgsc.bcm.edu	37	4	110581363	110581363	+	Missense_Mutation	SNP	T	T	A	rs4698744	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	56	119	0	0.474576	0	T|0.669;A|0.331	0.331	strong	.	CCDC109B	47	.	NM_017918	exon3	c.T188A	p.I63N	CAGTTATTTATAG	.	PASS	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	37	5	40998235	40998235	+	Silent	SNP	C	C	T	rs722575	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	41	102	0	0.539474	0	C|0.702;T|0.298	0.298	strong	HEATR7B2,NS,carcinoma,-2,2	.	.	2	NM_173489	exon42	c.G4677A	p.P1559P	AATACACGGATCT	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	37	16	4942099	4942099	+	Missense_Mutation	SNP	C	C	T	rs1049205	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	59	101	0	0.483607	0	C|0.588;T|0.412	0.412	strong	PPL,NS,carcinoma,0,1	PPL	168	1	NM_002705	exon15	c.G1766A	p.R589Q	TCCACCCGGGTCC	.	PASS	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	37	2	189862995	189862995	+	Silent	SNP	T	T	C	rs41263757	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	47	76	0	0.460784	0	T|0.998;C|0.002	0.002	strong	.	COL3A1	292	.	NM_000090	exon28	c.T1927C	p.L643L	TAGGGCTTGCCTG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9091771	9091771	+	Missense_Mutation	SNP	C	C	T	rs375862521		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	62	153	1	0.430556	0.00653595	.	.	weak	MUC16_ENST00000397910,NS,carcinoma,0,2	MUC16	4315	2	NM_024690	exon1	c.G44A	p.R15H	AAGGAGCGGGTGG	.	scavenged	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	37	2	157406249	157406249	+	Missense_Mutation	SNP	G	G	A	rs2116665	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	84	144	0	0.545455	0	G|0.353;N|0.000	.	strong	GPD2,caecum,carcinoma,0,2	GPD2	59	2	NM_001083112	exon7	c.G791A	p.R264H	AAGTGCGTGTGAG	.	PASS	Atlas-SNP
KCNMA1	3778	hgsc.bcm.edu	37	10	78944590	78944590	+	Silent	SNP	G	G	A	rs1131824	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	63	50	0	0.954545	0	G|0.579;A|0.421	0.421	strong	.	KCNMA1	370	.	NM_001161352	exon4	c.C687T	p.F229F	CAAGCCGAAGTAG	.	PASS	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	37	19	55673145	55673145	+	Missense_Mutation	SNP	C	C	T	rs58824375	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	18	39	0	0.473684	0	C|0.886;T|0.114	0.114	strong	.	.	.	.	NM_001256714	exon6	c.G733A	p.G245S	TCTCGCCGCCAGC	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89825065	89825065	+	Silent	SNP	G	G	A	rs17226980	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	37	78	0	0.4625	0	G|0.933;A|0.067	0.067	strong	.	FANCA	99	.	NM_000135	exon30	c.C2901T	p.S967S	AGCCGAGGACTCA	.	PASS	Atlas-SNP
WIPF3	644150	hgsc.bcm.edu	37	7	29923970	29923970	+	Missense_Mutation	SNP	A	A	T	rs174965	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	45	108	0	0.5	0	A|0.940;T|0.060	0.060	strong	.	WIPF3	46	.	NM_001080529	exon5	c.A860T	p.Q287L	ATGCGCAGGAGCC	.	PASS	Atlas-SNP
CEP55	55165	hgsc.bcm.edu	37	10	95259979	95259979	+	Missense_Mutation	SNP	C	C	G	rs3740370	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	26	50	0	0.464286	0	C|0.756;G|0.244	0.244	strong	.	CEP55	35	.	NM_018131	exon2	c.C171G	p.H57Q	GAGACACAGACTT	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152277055	152277055	+	Missense_Mutation	SNP	C	C	G	rs2065955	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	111	262	0	0.426923	0	C|0.615;G|0.385	0.385	strong	.	FLG	900	.	NM_002016	exon3	c.G10307C	p.G3436A	GGGTGTCCACGAA	.	PASS	Atlas-SNP
NAAA	27163	hgsc.bcm.edu	37	4	76857309	76857309	+	Missense_Mutation	SNP	C	C	T	rs4859571	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	40	82	0	0.519481	0	C|0.772;N|0.000	.	strong	.	NAAA	26	.	NM_014435	exon3	c.G451A	p.V151I	GTAAGACATTCCC	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790474	4790474	+	Missense_Mutation	SNP	T	T	C	rs11033793	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	74	135	0	0.524823	0	T|0.810;C|0.190	0.190	strong	.	OR51F1	60	.	NM_001004752	exon1	c.A674G	p.H225R	ACAGAGTGAATAA	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790471	4790471	+	Missense_Mutation	SNP	G	G	A	rs1030723	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	74	134	0	0.544118	0	G|0.798;A|0.202	0.202	strong	.	OR51F1	60	.	NM_001004752	exon1	c.C677T	p.S226F	AGGACAGAGTGAA	.	PASS	Atlas-SNP
MINA	84864	hgsc.bcm.edu	37	3	97664725	97664725	+	Missense_Mutation	SNP	C	C	T	rs2172257	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	52	114	0	0.485981	0	C|0.535;T|0.465	0.465	strong	MINA,NS,carcinoma,0,1	MINA	39	1	NM_001042533	exon9	c.G1156A	p.A386T	CTTGAGCTTCATC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276659	152276659	+	Missense_Mutation	SNP	T	T	C	rs7532285	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	296	36	380	0	0.121622	0	T|0.993;C|0.007	0.007	strong	FLG,NS,carcinoma,+1,1	FLG	900	1	NM_002016	exon3	c.A10703G	p.Q3568R	TGCTCCTGAGCAG	.	scavenged	Atlas-SNP
WDR78	79819	hgsc.bcm.edu	37	1	67327894	67327894	+	Silent	SNP	A	A	G	rs34182923	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	341	167	343	0	0.489736	0	A|0.982;G|0.018	0.018	strong	.	WDR78	102	.	NM_207014	exon7	c.T1032C	p.S344S	TTTACTACTTGAC	.	PASS	Atlas-SNP
FGF21	26291	hgsc.bcm.edu	37	19	49259529	49259529	+	Silent	SNP	A	A	G	rs838133	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	91	172	0	0.52907	0	A|0.337;G|0.663	0.663	strong	FGF21,NS,carcinoma,+1,1	FGF21	21	1	NM_019113	exon1	c.A36G	p.G12G	CTCAGGACTGTGG	.	PASS	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	37	7	133884016	133884016	+	Silent	SNP	C	C	T	rs61749958	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	80	158	0	0.444444	0	C|1.000;T|0.000	0.000	weak	.	LRGUK	113	.	NM_144648	exon14	c.C1590T	p.I530I	TTATATCCTGGTG	.	PASS	Atlas-SNP
FAIM	55179	hgsc.bcm.edu	37	3	138347957	138347957	+	Missense_Mutation	SNP	G	G	A	rs641320	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	47	126	0	0.423423	0	G|0.743;T|0.004	.	strong	.	FAIM	27	.	NM_001033030	exon5	c.G451A	p.A151T	AAAGATGCTATGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152285930	152285930	+	Missense_Mutation	SNP	G	G	A	rs11584340	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	337	171	300	1	0.507418	0.00333333	G|0.785;A|0.215	0.215	strong	.	FLG	900	.	NM_002016	exon3	c.C1432T	p.P478S	AGTCAGGCTGTTC	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144944379	144944379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	32	68	0	0.470588	0	.	.	none	.	EPPK1	199	.	NM_031308	exon1	c.T3043C	p.F1015L	CAGAGAAGGGGTC	.	PASS	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	37	14	96829302	96829302	+	Silent	SNP	C	C	T	rs72706804	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	63	132	0	0.443662	0	C|0.986;T|0.014	0.014	strong	.	ATG2B	169	.	NM_018036	exon1	c.G12A	p.P4P	CGAAAACGGCCAA	.	PASS	Atlas-SNP
ASB11	140456	hgsc.bcm.edu	37	X	15332558	15332558	+	Silent	SNP	A	A	G	rs5935944	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	30	64	0	1	0	A|0.680;0|0.003	.	strong	.	ASB11	79	.	NM_001012428	exon1	c.T51C	p.R17R	TCTGATACGTTCT	.	PASS	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327903	16327903	+	Missense_Mutation	SNP	C	C	A	rs3817753	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	13	59	2	0.213115	0.0338983	C|0.899;A|0.101	0.101	strong	ATXN1,rectum,carcinoma,0,1	ATXN1	117	1	NM_001128164	exon7	c.G639T	p.Q213H	CTGCTGCTGCTGA	.	scavenged	Atlas-SNP
COLGALT1	79709	hgsc.bcm.edu	37	19	17670201	17670201	+	Silent	SNP	C	C	T	rs62119894	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	57	144	0	0.456	0	C|0.942;T|0.058	0.058	strong	.	.	.	.	NM_024656	exon2	c.C342T	p.S114S	CCATTCCGTGGAG	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240511	39240511	+	Missense_Mutation	SNP	A	A	T	rs383835	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	36	88	0	0.418605	0	A|0.527;T|0.473	0.473	strong	.	KRTAP4-7	49	.	NM_033061	exon1	c.A53T	p.D18V	GCCAAGACCTCTG	.	PASS	Atlas-SNP
ALG1	56052	hgsc.bcm.edu	37	16	5132636	5132636	+	Silent	SNP	C	C	T	rs1047732	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	43	54	0	1	0	C|0.536;T|0.464	0.464	strong	.	ALG1	35	.	NM_019109	exon11	c.C1149T	p.F383F	CATGTTCGGGTGC	.	PASS	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	37	6	47847179	47847179	+	Silent	SNP	A	A	G	rs3799276	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	138	114	0	0.992806	0	A|0.279;G|0.721	0.721	strong	.	.	.	.	NM_001013732	exon3	c.T1401C	p.V467V	GATGACAACAAAT	.	PASS	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	37	19	44932972	44932972	+	Missense_Mutation	SNP	C	C	T	rs1434579	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	80	162	0	0.457143	0	C|0.728;T|0.272	0.272	strong	ZNF229,NS,carcinoma,+1,1	ZNF229	123	1	NM_014518	exon6	c.G1984A	p.G662R	CCTTTCCGCACTC	.	PASS	Atlas-SNP
GPR126	57211	hgsc.bcm.edu	37	6	142691549	142691549	+	Missense_Mutation	SNP	A	A	C	rs11155242	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	59	97	0	0.522124	0	A|0.830;C|0.170	0.170	strong	.	GPR126	192	.	NM_198569	exon4	c.A688C	p.K230Q	GATTCAAAATGTT	.	PASS	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	37	13	28624294	28624294	+	Missense_Mutation	SNP	G	G	A	rs1933437	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	160	199	1	1	0.00502513	G|0.465;A|0.535	0.535	strong	.	FLT3	15525	.	NM_004119	exon6	c.C680T	p.T227M	ATGTCCGTCCCAA	.	PASS	Atlas-SNP
QPCT	25797	hgsc.bcm.edu	37	2	37599963	37599963	+	Missense_Mutation	SNP	A	A	C	rs4670696	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	32	91	0	0.340426	0	A|0.925;C|0.075	0.075	strong	QPCT,colon,carcinoma,0,1	QPCT	34	1	NM_012413	exon7	c.A1079C	p.H360P	ATCTTCATTTGTA	.	PASS	Atlas-SNP
PLEK	5341	hgsc.bcm.edu	37	2	68613710	68613710	+	Silent	SNP	G	G	A	rs2070171	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	55	114	0	0.45082	0	G|0.746;A|0.254	0.254	strong	.	PLEK	64	.	NM_002664	exon5	c.G549A	p.S183S	TTCATCGCTGCTC	.	PASS	Atlas-SNP
FASTKD3	79072	hgsc.bcm.edu	37	5	7867027	7867027	+	Silent	SNP	A	A	G	rs77130393	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	68	165	0	0.450331	0	A|0.984;G|0.016	0.016	strong	.	FASTKD3	88	.	NM_024091	exon2	c.T1170C	p.N390N	CACTGCATTGAGG	.	PASS	Atlas-SNP
AAMDC	28971	hgsc.bcm.edu	37	11	77553638	77553638	+	Silent	SNP	T	T	C	rs585721	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	33	65	0	0.478261	0	T|0.588;C|0.412	0.412	strong	C11orf67,NS,carcinoma,0,1	.	.	1	NM_024684	exon2	c.T96C	p.G32G	AGGGGGTAGTCGG	.	PASS	Atlas-SNP
SECISBP2L	9728	hgsc.bcm.edu	37	15	49285001	49285001	+	Missense_Mutation	SNP	G	G	C	rs34895054	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	195	92	173	0	0.471795	0	G|0.812;C|0.188	0.188	strong	SECISBP2L,NS,carcinoma,0,1	SECISBP2L	118	1	NM_001193489	exon18	c.C2746G	p.P916A	CAATTGGGGGTGT	.	PASS	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	37	8	133184914	133184914	+	Silent	SNP	G	G	C	rs17575754	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	17	44	0	0.425	0	G|0.954;C|0.046	0.046	strong	.	KCNQ3	164	.	NM_004519	exon7	c.C1071G	p.L357L	CACCTTGAGGGCC	.	PASS	Atlas-SNP
STPG1	90529	hgsc.bcm.edu	37	1	24718079	24718079	+	Missense_Mutation	SNP	C	C	A	rs560219	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	29	92	0	0.446154	0	C|0.758;A|0.242	0.242	strong	.	.	.	.	NM_001199012	exon3	c.G161T	p.S54I	GCTTGACTATTGA	.	PASS	Atlas-SNP
PRDM7	11105	hgsc.bcm.edu	37	16	90124871	90124871	+	Missense_Mutation	SNP	G	G	T	rs7206111	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	328	171	302	1	0.521341	0.00331126	G|0.923;T|0.077	0.077	strong	PRDM7,NS,carcinoma,0,1	PRDM7	53	1	NM_001098173	exon10	c.C1305A	p.N435K	CCACATGTTGACT	.	PASS	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	37	13	42264380	42264380	+	Missense_Mutation	SNP	C	C	T	rs2274810	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	94	0	0.526316	0	C|0.959;T|0.041	0.041	strong	.	.	.	.	NM_015058	exon33	c.G3898A	p.E1300K	CAGATTCGATGTG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179396162	179396162	+	Missense_Mutation	SNP	C	C	G	rs56308529	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	45	81	0	0.542169	0	C|0.970;G|0.030	0.030	strong	TTN_ENST00000359218,NS,carcinoma,-2,4	TTN	18412	4	NM_001267550	exon358	c.G105180C	p.E35060D	ATACGCCTCTGTT	.	PASS	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	37	9	140361847	140361847	+	Silent	SNP	G	G	A	rs61738892	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	41	107	0	0.43617	0	G|0.956;A|0.044	0.044	strong	.	PNPLA7	124	.	NM_001098537	exon26	c.C2961T	p.I987I	GGCCCCGATGGAC	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13902220	13902220	+	Missense_Mutation	SNP	T	T	C	rs1530498	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	18	50	0	0.36	0	T|0.601;C|0.399	0.399	strong	.	DNAH5	868	.	NM_001369	exon13	c.A1672G	p.T558A	CAAATGTAACATC	.	PASS	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	37	14	60903757	60903757	+	Missense_Mutation	SNP	G	G	A	rs1254319	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	76	131	0	0.513514	0	G|0.588;A|0.412	0.412	strong	.	C14orf39	79	.	NM_174978	exon18	c.C1570T	p.L524F	TCTCAAGTAAGTT	.	PASS	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	37	6	43492578	43492578	+	Silent	SNP	G	G	A	rs2257082	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	37	66	0	0.41573	0	G|0.652;N|0.002	.	strong	.	XPO5	79	.	NM_020750	exon30	c.C3303T	p.Y1101Y	TGCCTCGTATATC	.	PASS	Atlas-SNP
VEZF1	7716	hgsc.bcm.edu	37	17	56056607	56056607	+	Silent	SNP	C	C	T	rs73995411	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	9	123	0	0.0466321	0	C|0.969;T|0.031	0.031	strong	VEZF1,caecum,carcinoma,0,3	VEZF1	50	3	NM_007146	exon5	c.G1044A	p.Q348Q	TTGTTGCTGCTGC	.	scavenged	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093769	1093769	+	Missense_Mutation	SNP	G	G	A	rs41361144	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	36	86	0	0.391304	0	G|0.937;A|0.063	0.063	strong	.	MUC2	614	.	NM_002457	exon31	c.G5576A	p.R1859Q	CCTCTCGGTCCAC	.	PASS	Atlas-SNP
OR2B11	127623	hgsc.bcm.edu	37	1	247614553	247614553	+	Silent	SNP	C	C	T	rs12086048	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	56	113	0	0.528302	0	C|0.855;T|0.145	0.145	strong	OR2B11,NS,carcinoma,0,11	OR2B11	102	11	NM_001004492	exon1	c.G732A	p.T244T	GGAACACGTCCCA	.	PASS	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40373950	40373950	+	Missense_Mutation	SNP	G	G	T	rs3746010	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	40	888	1	0.930233	0.00112613	G|0.750;T|0.250	0.250	weak	FCGBP,NS,carcinoma,0,1	FCGBP	416	1	NM_003890	exon26	c.C12128A	p.T4043N	CCTTTGGTGACGC	.	scavenged	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	37	11	77378388	77378388	+	Silent	SNP	T	T	C	rs4945197	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	64	133	0	0.516129	0	T|0.813;C|0.187	0.187	strong	RSF1,NS,carcinoma,0,1	RSF1	105	1	NM_016578	exon16	c.A3900G	p.L1300L	CCGGTGTAGCCGT	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152127455	152127455	+	Missense_Mutation	SNP	T	T	C	rs75957773	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	314	146	326	0	0.464968	0	T|0.884;C|0.116	0.116	strong	RPTN,NS,carcinoma,0,1	RPTN	123	1	NM_001122965	exon3	c.A2120G	p.E707G	TGCTCTTCCTCTG	.	PASS	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	37	2	234905078	234905078	+	Silent	SNP	C	C	T	rs11563208	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	261	261	287	0	1	0	C|0.795;N|0.000	.	strong	.	TRPM8	146	.	NM_024080	exon22	c.C3048T	p.I1016I	CTTCATCGTCTTC	.	PASS	Atlas-SNP
HSD3B1	3283	hgsc.bcm.edu	37	1	120057158	120057158	+	Silent	SNP	C	C	T	rs6203	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	93	240	0	0.432558	0	C|0.647;T|0.353	0.353	strong	.	HSD3B1	53	.	NM_000862	exon4	c.C1012T	p.L338L	CGAGATCTGGCGT	.	PASS	Atlas-SNP
POTEG	404785	hgsc.bcm.edu	37	14	19553494	19553494	+	Silent	SNP	G	G	A	rs200256710	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	918	386	908	1	0.420479	0.00110132	G|0.996;A|0.004	0.004	strong	POTEG,NS,carcinoma,0,1	POTEG	118	1	NM_001005356	exon1	c.G78A	p.K26K	GGGCAAGTGGTGC	.	scavenged	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84607758	84607758	+	Silent	SNP	T	T	A	rs10867826	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	405	216	396	0	0.533333	0	T|0.426;A|0.574	0.574	strong	.	.	.	.	NM_001001670	exon4	c.T2373A	p.T791T	GGAGACTTCTTCA	.	PASS	Atlas-SNP
PER2	8864	hgsc.bcm.edu	37	2	239155053	239155053	+	Missense_Mutation	SNP	C	C	T	rs934945	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	51	97	0	0.485714	0	C|0.848;T|0.152	0.152	strong	.	PER2	85	.	NM_022817	exon23	c.G3731A	p.G1244E	GGGGATCCATTTT	.	PASS	Atlas-SNP
KRTAP13-4	284827	hgsc.bcm.edu	37	21	31803054	31803054	+	Missense_Mutation	SNP	G	G	A	rs999597	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	46	84	0	0.489362	0	G|0.979;A|0.021	0.021	strong	.	KRTAP13-4	46	.	NM_181600	exon1	c.G461A	p.R154H	GATCTCGCTTCTA	.	PASS	Atlas-SNP
FAM162B	221303	hgsc.bcm.edu	37	6	117086378	117086378	+	Missense_Mutation	SNP	C	C	A	rs654128	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	18	34	0	0.514286	0	C|0.895;A|0.105	0.105	strong	.	FAM162B	19	.	NM_001085480	exon2	c.G213T	p.Q71H	GTCGAACTGCGAA	.	PASS	Atlas-SNP
EFCC1	79825	hgsc.bcm.edu	37	3	128755953	128755953	+	Missense_Mutation	SNP	G	G	A	rs3732430	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	37	30	0	1	0	G|0.653;A|0.347	0.347	strong	.	.	.	.	NM_024768	exon6	c.G1583A	p.R528Q	GGCTCCGGGACCT	.	PASS	Atlas-SNP
FNDC7	163479	hgsc.bcm.edu	37	1	109260508	109260508	+	Silent	SNP	C	C	T	rs79836484	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	64	132	0	0.447552	0	C|0.988;T|0.012	0.012	strong	.	FNDC7	113	.	NM_001144937	exon3	c.C192T	p.D64D	TGAAGACGGGGAC	.	PASS	Atlas-SNP
PARVG	64098	hgsc.bcm.edu	37	22	44586522	44586522	+	Silent	SNP	C	C	T	rs2272942	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	31	58	0	0.43662	0	C|0.747;T|0.253	0.253	strong	.	PARVG	41	.	NM_001137606	exon7	c.C480T	p.V160V	CAACGTCCAGGTG	.	PASS	Atlas-SNP
DGKB	1607	hgsc.bcm.edu	37	7	14217673	14217673	+	Silent	SNP	G	G	A	rs6966154	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	20	63	0	0.5	0	G|0.720;A|0.280	0.280	strong	.	DGKB	166	.	NM_145695	exon23	c.C2229T	p.C743C	GCAGGAGCACTGA	.	PASS	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	37	13	42729441	42729441	+	Silent	SNP	C	C	T	rs3208827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	92	189	1	0.544379	0.00529101	C|0.928;T|0.072	0.072	strong	.	DGKH	106	.	NM_001204504	exon5	c.C399T	p.F133F	TCCATTCAGAAGG	.	PASS	Atlas-SNP
OR11A1	26531	hgsc.bcm.edu	37	6	29395180	29395180	+	Missense_Mutation	SNP	A	A	G	rs61978565	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	28	63	0	0.56	0	A|0.957;G|0.043	0.043	strong	OR11A1,NS,carcinoma,0,1	OR11A1	30	1	NM_013937	exon1	c.T239C	p.M80T	TTTGGCATCACTG	.	PASS	Atlas-SNP
IFT74	80173	hgsc.bcm.edu	37	9	27062721	27062721	+	Missense_Mutation	SNP	C	C	T	rs3429	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	171	78	143	0	0.45614	0	C|0.900;T|0.100	0.100	strong	.	IFT74	46	.	NM_001099222	exon20	c.C1790T	p.T597I	ATAGCACCAGCGG	.	PASS	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306927	1306927	+	Silent	SNP	C	C	T	rs79472859	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	613	219	384	1	0.357259	0.00260417	C|0.643;T|0.357	0.357	strong	TPSD1,NS,carcinoma,0,1	TPSD1	47	1	NM_012217	exon3	c.C384T	p.D128D	GGCGGACATCGCC	.	PASS	Atlas-SNP
APLP1	333	hgsc.bcm.edu	37	19	36363470	36363470	+	Silent	SNP	G	G	A	rs230261	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	59	131	0	0.457364	0	G|0.943;A|0.057	0.057	strong	.	APLP1	77	.	NM_005166	exon7	c.G936A	p.R312R	CCTGAGGGCCAAG	.	PASS	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	37	5	149323772	149323772	+	Silent	SNP	G	G	A	rs2277926	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	39	68	0	0.5	0	G|0.807;A|0.193	0.193	strong	PDE6A,NS,carcinoma,0,1	PDE6A	98	1	NM_000440	exon1	c.C465T	p.N155N	CTCTGTGTTGGGG	.	PASS	Atlas-SNP
TNFSF8	944	hgsc.bcm.edu	37	9	117668142	117668142	+	Silent	SNP	C	C	T	rs3181195	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	84	100	0	0.512195	0	C|0.661;T|0.339	0.339	strong	TNFSF8,colon,carcinoma,-1,1	TNFSF8	34	1	NM_001252290	exon3	c.G276A	p.R92R	TGGAGCCCTTTTC	.	PASS	Atlas-SNP
SYT9	143425	hgsc.bcm.edu	37	11	7324584	7324584	+	Missense_Mutation	SNP	G	G	A	rs78477754	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	26	29	0	0.702703	0	G|0.974;A|0.026	0.026	strong	.	SYT9	91	.	NM_175733	exon2	c.G460A	p.V154M	GTCCGCGTGCAGC	.	PASS	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28854958	28854958	+	Missense_Mutation	SNP	C	C	T	rs2199619	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	67	124	0	0.558333	0	C|0.742;A|0.002	.	strong	.	PLB1	255	.	NM_153021	exon55	c.C3953T	p.A1318V	ACTTTGCGGTTGT	.	PASS	Atlas-SNP
SMPDL3B	27293	hgsc.bcm.edu	37	1	28282292	28282292	+	Missense_Mutation	SNP	T	T	C	rs3813803	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	55	126	0	0.458333	0	T|0.782;C|0.218	0.218	strong	.	SMPDL3B	54	.	NM_001009568	exon6	c.T788C	p.V263A	AGGTGGTCCGGAA	.	PASS	Atlas-SNP
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124781	26124781	+	Silent	SNP	C	C	T	rs143405410	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	95	169	1	0.5	0.00591716	C|0.998;T|0.002	0.002	strong	HIST1H2AC,colon,carcinoma,0,1	HIST1H2AC	29	1	NM_003512	exon1	c.C321T	p.G107G	GGGCGGCGTCCTT	.	scavenged	Atlas-SNP
ZKSCAN2	342357	hgsc.bcm.edu	37	16	25258035	25258035	+	Silent	SNP	A	A	G	rs11649280	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	260	129	239	0	0.496154	0	A|0.696;G|0.304	0.304	strong	.	ZKSCAN2	90	.	NM_001012981	exon5	c.T1482C	p.N494N	ACTGAGATTCTGA	.	PASS	Atlas-SNP
FCGR3A	2214	hgsc.bcm.edu	37	1	161518214	161518214	+	Missense_Mutation	SNP	T	T	C	rs2290834	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	507	150	418	0	0.295858	0	.	.	weak	FCGR3A,NS,carcinoma,+2,2	FCGR3A	38	2	NM_000569	exon3	c.A424G	p.I142V	CACCGATATGGAC	.	PASS	Atlas-SNP
OLFM2	93145	hgsc.bcm.edu	37	19	9968139	9968139	+	Missense_Mutation	SNP	G	G	A	rs11556087	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	30	17	43	0	0.566667	0	G|0.859;A|0.141	0.141	strong	.	OLFM2	42	.	NM_058164	exon4	c.C380T	p.T127M	AGTTCCGTCATCC	.	PASS	Atlas-SNP
UBXN4	23190	hgsc.bcm.edu	37	2	136511817	136511817	+	Silent	SNP	A	A	G	rs1050115	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	131	128	141	1	0.977099	0.0070922	A|0.774;G|0.226	0.226	strong	UBXN4,NS,carcinoma,0,1	UBXN4	54	1	NM_014607	exon4	c.A303G	p.E101E	AGATGAACTTGTT	.	PASS	Atlas-SNP
LILRA4	23547	hgsc.bcm.edu	37	19	54849463	54849463	+	Silent	SNP	C	C	T	rs12976217	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	132	141	1	0.992481	0.0070922	C|0.657;T|0.343	0.343	strong	.	LILRA4	91	.	NM_012276	exon4	c.G399A	p.V133V	TGAGGTCACCACA	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	37	19	2396611	2396611	+	Missense_Mutation	SNP	C	C	T	rs17685098	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	52	120	0	0.440678	0	C|0.673;T|0.327	0.327	strong	.	TMPRSS9	79	.	NM_182973	exon2	c.C217T	p.R73W	AGTTTGCGGCGGG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9059232	9059232	+	Missense_Mutation	SNP	T	T	C	rs12710265	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	93	201	0	0.547059	0	T|0.786;C|0.214	0.214	strong	.	MUC16	4315	.	NM_024690	exon3	c.A28214G	p.Q9405R	ACTGACTGTGGAA	.	PASS	Atlas-SNP
HS3ST6	64711	hgsc.bcm.edu	37	16	1962132	1962132	+	Missense_Mutation	SNP	G	G	A	rs8055325	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	19	58	0	0.263889	0	G|0.549;A|0.451	0.451	strong	.	HS3ST6	26	.	NM_001009606	exon2	c.C395T	p.A132V	CGGGGGGCCTCTC	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150914184	150914184	+	Silent	SNP	A	A	T	rs1432643	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	93	114	0	1	0	T|0.561;N|0.000	0.561	strong	.	FAT2	465	.	NM_001447	exon12	c.T9213A	p.T3071T	TAGGGCAGTGAGT	.	PASS	Atlas-SNP
PGLYRP2	114770	hgsc.bcm.edu	37	19	15580694	15580694	+	Missense_Mutation	SNP	G	G	A	rs61734899	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	17	33	0	0.361702	0	G|0.983;A|0.017	0.017	strong	.	PGLYRP2	116	.	NM_052890	exon4	c.C1390T	p.H464Y	CCCAGTGCCAGCC	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123845897	123845897	+	Silent	SNP	G	G	C	rs1106992	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	31	56	0	0.449275	0	G|0.758;C|0.242	0.242	strong	.	TACC2	271	.	NM_206862	exon4	c.G3882C	p.L1294L	CCCCCTGTTGCAA	.	PASS	Atlas-SNP
TP53TG5	27296	hgsc.bcm.edu	37	20	44005936	44005936	+	Missense_Mutation	SNP	C	C	T	rs2231616	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	82	78	0	1	0	C|0.863;T|0.137	0.137	strong	.	TP53TG5	36	.	NM_014477	exon3	c.G170A	p.R57H	ATCCGGCGGTTTG	.	PASS	Atlas-SNP
MLIP	90523	hgsc.bcm.edu	37	6	54095524	54095524	+	Missense_Mutation	SNP	C	C	T	rs2275769	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	73	125	0	0.489933	0	C|0.870;T|0.130	0.130	strong	.	MLIP	84	.	NM_138569	exon11	c.C1126T	p.P376S	ACAGTCCCTCCCA	.	PASS	Atlas-SNP
TRIM45	80263	hgsc.bcm.edu	37	1	117656088	117656088	+	Missense_Mutation	SNP	A	A	G	rs1289658	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	38	125	0	0.368932	0	A|0.549;G|0.451	0.451	strong	.	TRIM45	55	.	NM_025188	exon5	c.T1487C	p.M496T	CTCACCATCACAG	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214813782	214813782	+	Missense_Mutation	SNP	A	A	G	rs3795524	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	100	137	0	0.568182	0	A|0.914;G|0.086	0.086	strong	.	CENPF	321	.	NM_016343	exon12	c.A2101G	p.M701V	GCTTATATGGAGC	.	PASS	Atlas-SNP
GJA3	2700	hgsc.bcm.edu	37	13	20716885	20716885	+	Silent	SNP	G	G	A	rs74607195	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	52	94	0	0.460177	0	G|0.978;A|0.022	0.022	strong	.	GJA3	32	.	NM_021954	exon2	c.C543T	p.C181C	GCGGTCGCAGCGG	.	PASS	Atlas-SNP
SCNN1A	6337	hgsc.bcm.edu	37	12	6457062	6457062	+	Missense_Mutation	SNP	T	T	C	rs2228576	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	25	76	0	0.378788	0	T|0.279;C|0.719	0.719	strong	.	SCNN1A	54	.	NM_001159576	exon12	c.A2164G	p.T722A	GACAGGTGGAGGA	.	PASS	Atlas-SNP
AFAP1	60312	hgsc.bcm.edu	37	4	7802227	7802227	+	Missense_Mutation	SNP	G	G	C	rs28406288	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	82	158	0	0.522293	0	G|0.843;C|0.157	0.157	strong	.	AFAP1	93	.	NM_001134647	exon10	c.C1208G	p.S403C	TGTTTAGAATCCA	.	PASS	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241834944	241834944	+	Silent	SNP	T	T	C	rs4468809	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	64	134	0	0.407643	0	T|0.497;C|0.503	0.503	strong	.	C2orf54	14	.	NM_001085437	exon1	c.A471G	p.V157V	GGCTGCTACCAGC	.	PASS	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	37	22	28559120	28559120	+	Silent	SNP	G	G	C	rs17486417	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	33	52	0	0.478261	0	G|0.870;C|0.128	0.128	strong	.	TTC28	84	.	NM_001145418	exon6	c.C1401G	p.L467L	GTCCTTGAGATCC	.	PASS	Atlas-SNP
TECTB	6975	hgsc.bcm.edu	37	10	114053546	114053546	+	Silent	SNP	C	C	G	rs726009	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	143	125	0	1	0	C|0.418;G|0.582	0.582	strong	.	TECTB	35	.	NM_058222	exon5	c.C534G	p.S178S	GGCATCCGAAATC	.	PASS	Atlas-SNP
KIF22	3835	hgsc.bcm.edu	37	16	29816237	29816237	+	Missense_Mutation	SNP	G	G	A	rs146561986	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	33	52	0	0.515625	0	G|0.998;A|0.002	0.002	strong	.	KIF22	29	.	NM_007317	exon12	c.G1780A	p.D594N	ATACTGGATCTGC	.	PASS	Atlas-SNP
ANAPC4	29945	hgsc.bcm.edu	37	4	25408838	25408838	+	Missense_Mutation	SNP	G	G	A	rs34811474	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	52	120	0	0.604651	0	G|0.858;A|0.142	0.142	strong	ANAPC4,NS,carcinoma,+1,1	ANAPC4	61	1	NM_013367	exon20	c.G1394A	p.R465Q	ATAATCGAAAAGG	.	PASS	Atlas-SNP
SLFN12	55106	hgsc.bcm.edu	37	17	33749546	33749546	+	Missense_Mutation	SNP	A	A	G	rs2586514	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	55	115	0	0.478261	0	A|0.416;G|0.584	0.584	strong	.	SLFN12	56	.	NM_018042	exon2	c.T502C	p.C168R	CAACACAGGGCCT	.	PASS	Atlas-SNP
TSPAN8	7103	hgsc.bcm.edu	37	12	71523134	71523134	+	Missense_Mutation	SNP	A	A	C	rs1051334	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	148	128	0	0.993289	0	A|0.689;C|0.311	0.311	strong	.	TSPAN8	30	.	NM_004616	exon8	c.T637G	p.S213A	CAAATGATATTCC	.	PASS	Atlas-SNP
KIAA0408	9729	hgsc.bcm.edu	37	6	127771452	127771452	+	Missense_Mutation	SNP	T	T	G	rs3734447	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	22	60	0	0.431373	0	T|0.483;G|0.517	0.517	strong	.	KIAA0408	61	.	NM_014702	exon3	c.A181C	p.S61R	TAGCACTTTCATT	.	PASS	Atlas-SNP
COMP	1311	hgsc.bcm.edu	37	19	18896823	18896823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	22	58	0	0.44898	0	.	.	none	.	COMP	62	.	NM_000095	exon13	c.C1441T	p.R481W	TGTCCCGACTGTC	.	PASS	Atlas-SNP
SCAI	286205	hgsc.bcm.edu	37	9	127764305	127764305	+	Silent	SNP	G	G	A	rs764304	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	22	49	0	0.468085	0	G|0.838;A|0.162	0.162	strong	SCAI,NS,carcinoma,0,1	SCAI	84	1	NM_173690	exon13	c.C1152T	p.S384S	AAGCACGCTATTG	.	PASS	Atlas-SNP
DDX55	57696	hgsc.bcm.edu	37	12	124104551	124104551	+	Missense_Mutation	SNP	A	A	G	rs10773019	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	27	68	0	0.3375	0	A|0.922;G|0.078	0.078	strong	.	DDX55	51	.	NM_020936	exon14	c.A1667G	p.N556S	TTCTTAATGACAC	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43547873	43547873	+	Missense_Mutation	SNP	G	G	A	rs220159	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	64	167	0	0.395062	0	G|0.638;N|0.000	.	strong	UMODL1_ENST00000408989,colon,carcinoma,0,2	UMODL1	186	2	NM_173568	exon19	c.G4006A	p.D1336N	ATCAACGACTCCA	.	PASS	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	37	2	55254165	55254165	+	Missense_Mutation	SNP	T	T	A	rs11677099	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	56	105	2	0.434109	0.0190476	T|0.976;A|0.024	0.024	strong	RTN4,NS,carcinoma,0,1	RTN4	189	1	NM_020532	exon3	c.A1070T	p.D357V	ACTTCATCCTCTT	.	scavenged	Atlas-SNP
KCTD20	222658	hgsc.bcm.edu	37	6	36446975	36446975	+	Missense_Mutation	SNP	G	G	C	rs2239808	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	106	177	0	0.549223	0	G|0.705;C|0.295	0.295	strong	.	KCTD20	37	.	NM_173562	exon4	c.G512C	p.S171T	GCATCAGTGCAAC	.	PASS	Atlas-SNP
C4orf26	152816	hgsc.bcm.edu	37	4	76489345	76489345	+	Missense_Mutation	SNP	C	C	T	rs2306175	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	43	79	0	0.589041	0	C|0.741;T|0.259	0.259	strong	C4orf26,NS,carcinoma,0,1	C4orf26	24	1	NM_001206981	exon3	c.C133T	p.L45F	TTACGCCTCCTGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276377	152276377	+	Missense_Mutation	SNP	C	C	G	rs75235053	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	26	245	0	0.123223	0	C|0.500;G|0.500	0.500	weak	FLG,extremity,malignant_melanoma,0,2	FLG	900	2	NM_002016	exon3	c.G10985C	p.S3662T	GCCTGACTACCAC	.	scavenged	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237841390	237841390	+	Missense_Mutation	SNP	A	A	G	rs34967813	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	135	76	104	0	0.562963	0	A|0.827;G|0.173	0.173	strong	.	RYR2	1273	.	NM_001035	exon61	c.A8873G	p.Q2958R	ATGAACAAGAAAT	.	PASS	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	37	17	73919521	73919521	+	Silent	SNP	C	C	T	rs7219918	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	54	100	0	0.534653	0	C|0.955;T|0.045	0.045	strong	.	FBF1	48	.	NM_001080542	exon13	c.G1125A	p.V375V	AGGAGGCACTGAG	.	PASS	Atlas-SNP
ANKLE2	23141	hgsc.bcm.edu	37	12	133306589	133306589	+	Missense_Mutation	SNP	C	C	T	rs10781634	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	112	123	0	1	0	C|0.713;T|0.287	0.287	strong	.	ANKLE2	76	.	NM_015114	exon11	c.G2159A	p.R720H	TCCCCACGGGGGG	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48428715	48428715	+	Missense_Mutation	SNP	A	A	T	rs17132289	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	61	102	0	0.516949	0	A|0.908;T|0.092	0.092	strong	ABCA13_ENST00000435803,NS,carcinoma,0,2	ABCA13	1192	2	NM_152701	exon37	c.A11552T	p.Y3851F	AGGAATATGAGGG	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24669877	24669877	+	Missense_Mutation	SNP	C	C	G	rs17506606	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	39	71	0	0.65	0	C|0.845;G|0.155	0.155	strong	KIAA1217,caecum,carcinoma,+1,1	KIAA1217	235	1	NM_019590	exon3	c.C434G	p.A145G	CGTCCGCTGATTC	.	PASS	Atlas-SNP
CCDC154	645811	hgsc.bcm.edu	37	16	1488697	1488697	+	Silent	SNP	G	G	A	rs187437805	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	66	128	0	0.532258	0	G|0.998;A|0.002	0.002	strong	.	CCDC154	27	.	NM_001143980	exon9	c.C948T	p.A316A	GGCCACGGCAGCA	.	PASS	Atlas-SNP
SLC7A9	11136	hgsc.bcm.edu	37	19	33353041	33353041	+	Silent	SNP	G	G	A	rs1007161	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	31	104	0	0.430556	0	G|0.698;A|0.302	0.302	strong	.	SLC7A9	78	.	NM_001243036	exon6	c.C687T	p.L229L	GGCCCAGAGTCCA	.	PASS	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	37	6	42627430	42627430	+	Silent	SNP	C	C	T	rs6916713	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	37	70	0	0.596774	0	C|0.739;T|0.261	0.261	strong	.	UBR2	134	.	NM_015255	exon30	c.C3279T	p.G1093G	ACTGGGCCCCGCA	.	PASS	Atlas-SNP
VN1R4	317703	hgsc.bcm.edu	37	19	53770569	53770569	+	Missense_Mutation	SNP	G	G	C	rs74359534		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	295	95	293	0	0.322034	0	G|0.500;C|0.500	0.500	weak	.	VN1R4	65	.	NM_173857	exon1	c.C350G	p.A117G	AGTTTTGCCCACC	.	PASS	Atlas-SNP
GIMAP2	26157	hgsc.bcm.edu	37	7	150389593	150389593	+	Silent	SNP	T	T	C	rs1860871	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	83	128	0	0.557047	0	T|0.910;C|0.090	0.090	strong	.	GIMAP2	39	.	NM_015660	exon3	c.T219C	p.I73I	AGAGATTGTCATT	.	PASS	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	37	17	12852459	12852459	+	Silent	SNP	A	A	G	rs2072254	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	32	19	32	0	0.59375	0	A|0.902;G|0.098	0.098	strong	.	ARHGAP44	55	.	NM_014859	exon11	c.A864G	p.G288G	GTAGGGACTCTTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105413204	105413204	+	Missense_Mutation	SNP	G	G	T	rs2582514	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	205	204	176	0	0.995122	0	G|0.495;T|0.505	0.505	strong	AHNAK2_ENST00000333244,colon,carcinoma,0,2	AHNAK2	719	2	NM_138420	exon7	c.C8584A	p.R2862S	GAATGCGGATGTC	.	PASS	Atlas-SNP
FAM118A	55007	hgsc.bcm.edu	37	22	45723842	45723842	+	Silent	SNP	G	G	A	rs17851057	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	66	117	0	0.554622	0	G|0.539;A|0.461	0.461	strong	.	FAM118A	32	.	NM_017911	exon4	c.G420A	p.R140R	GGACAGGGGCGCC	.	PASS	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	37	8	123964011	123964011	+	Silent	SNP	G	G	A	rs61752912	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	18	41	0	0.346154	0	G|0.965;A|0.035	0.035	strong	.	ZHX2	106	.	NM_014943	exon3	c.G261A	p.T87T	CTCCACGCAAAAC	.	PASS	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	37	19	4511908	4511908	+	Silent	SNP	C	C	T	rs10423606	bycluster;byfrequency;by2hit2allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	270	205	273	0	0.759259	0	C|0.500;T|0.500	0.500	strong	.	PLIN4	191	.	NM_001080400	exon3	c.G2022A	p.T674T	CTTGGCCGTGTCT	.	PASS	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	37	14	21109726	21109726	+	Missense_Mutation	SNP	G	G	A	rs11622794	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	117	81	0	1	0	G|0.491;A|0.508	0.508	strong	.	OR6S1	49	.	NM_001001968	exon1	c.C125T	p.T42I	TTGCCTGTCAGAT	.	PASS	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	37	15	90768271	90768271	+	Silent	SNP	C	C	T	rs11547966	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	75	145	0	0.483871	0	C|0.835;T|0.165	0.165	strong	.	SEMA4B	51	.	NM_020210	exon11	c.C1266T	p.F422F	GAACTTCCTCAAG	.	PASS	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	37	3	197894668	197894668	+	Missense_Mutation	SNP	G	G	A	rs200450190		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	520	26	671	9	0.05	0.0134128	.	.	weak	FAM157A,NS,malignant_melanoma,0,1	FAM157A	4	1	NM_001145248	exon5	c.G1010A	p.R337K	CGCTGAGGTGCCA	.	scavenged	Atlas-SNP
ZC2HC1A	51101	hgsc.bcm.edu	37	8	79610710	79610710	+	Silent	SNP	A	A	G	rs1054283	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	86	0	1	0	A|0.323;G|0.677	0.677	strong	FAM164A,rectum,carcinoma,0,1	.	.	1	NM_016010	exon7	c.A666G	p.L222L	GACCTTATCTCCC	.	PASS	Atlas-SNP
CLEC1B	51266	hgsc.bcm.edu	37	12	10150974	10150974	+	Missense_Mutation	SNP	A	A	G	rs2273986	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	51	151	0	0.418033	0	A|0.594;G|0.406	0.406	strong	.	CLEC1B	39	.	NM_016509	exon2	c.T70C	p.S24P	ATGCAGAGCCAAC	.	PASS	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	37	6	17799575	17799575	+	Silent	SNP	A	A	G	rs3734235	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	108	106	0	1	0	A|0.813;G|0.187	0.187	strong	.	KIF13A	276	.	NM_001105567	exon22	c.T2712C	p.A904A	CGGGGCAGCCACC	.	PASS	Atlas-SNP
SAG	6295	hgsc.bcm.edu	37	2	234235820	234235820	+	Silent	SNP	C	C	T	rs2304773	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	117	127	0	1	0	C|0.893;T|0.107	0.107	strong	.	SAG	77	.	NM_000541	exon7	c.C489T	p.A163A	CGATGCCGAAGAG	.	PASS	Atlas-SNP
IL1B	3553	hgsc.bcm.edu	37	2	113590390	113590390	+	Silent	SNP	G	G	A	rs1143634	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	101	159	0	0.51269	0	G|0.828;A|0.172	0.172	strong	.	IL1B	35	.	NM_000576	exon5	c.C315T	p.F105F	TGTGTCGAAGAAG	.	PASS	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	37	6	17633033	17633033	+	Missense_Mutation	SNP	G	G	C	rs61744976	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	17	41	0	0.447368	0	G|0.894;C|0.106	0.106	strong	.	NUP153	116	.	NM_005124	exon17	c.C2507G	p.S836C	GGCAGAGAGACAG	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62316035	62316035	+	Missense_Mutation	SNP	C	C	T	rs12595158	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	18	67	0	0.352941	0	C|0.939;T|0.061	0.061	strong	.	VPS13C	506	.	NM_020821	exon7	c.G458A	p.R153H	TTTTTACGTTTAC	.	PASS	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	37	13	20577061	20577061	+	Missense_Mutation	SNP	G	G	T	rs61749503	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	95	199	0	0.508021	0	G|0.985;T|0.015	0.015	weak	.	ZMYM2	191	.	NM_001190964	exon5	c.G919T	p.V307L	TCACCAGTGGCCT	.	PASS	Atlas-SNP
PRRG4	79056	hgsc.bcm.edu	37	11	32874926	32874926	+	Silent	SNP	G	G	A	rs11032025	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	36	69	0	0.610169	0	G|0.604;A|0.396	0.396	strong	PRRG4,colon,carcinoma,0,1	PRRG4	15	1	NM_024081	exon6	c.G534A	p.P178P	ATTGCCGCCTTCT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105416295	105416295	+	Silent	SNP	C	C	T	rs200753593	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	304	123	270	4	0.404605	0.0148148	C|0.979;T|0.021	0.021	strong	AHNAK2_ENST00000333244,NS,carcinoma,-1,1	AHNAK2	719	1	NM_138420	exon7	c.G5493A	p.P1831P	GAACGACGGCATC	.	scavenged	Atlas-SNP
SEPHS1	22929	hgsc.bcm.edu	37	10	13378273	13378273	+	Silent	SNP	G	G	C	rs62641683	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	52	65	0	0.658228	0	G|0.979;C|0.021	0.021	strong	.	SEPHS1	99	.	NM_012247	exon4	c.C375G	p.L125L	TCCAAGGAGCATC	.	PASS	Atlas-SNP
OR10P1	121130	hgsc.bcm.edu	37	12	56030938	56030938	+	Missense_Mutation	SNP	C	C	T	rs10876838	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	43	111	1	0.457447	0.00900901	C|0.675;T|0.325	0.325	strong	OR10P1,NS,carcinoma,-1,1	OR10P1	48	1	NM_206899	exon1	c.C263T	p.P88L	GCTCCCCGCATCC	.	scavenged	Atlas-SNP
FAM46C	54855	hgsc.bcm.edu	37	1	118165577	118165577	+	Silent	SNP	C	C	G	rs865443	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	146	157	0	1	0	C|0.882;G|0.118	0.118	strong	.	FAM46C	25	.	NM_017709	exon2	c.C87G	p.L29L	GGTCCTCACTGAA	.	PASS	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134239760	134239760	+	Silent	SNP	C	C	T	rs34063963	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	39	113	0	0.438202	0	C|0.976;T|0.024	0.024	strong	.	GLB1L2	79	.	NM_138342	exon11	c.C1089T	p.D363D	TCGAGACTTCTTC	.	PASS	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140563712	140563712	+	Missense_Mutation	SNP	G	G	T	rs17844653	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	5	5	122	2	1	0.0163934	G|0.570;T|0.430	0.430	strong	PCDHB16,NS,neuroblastoma,+1,1	PCDHB16	159	1	NM_020957	exon1	c.G1578T	p.E526D	GCGGGAGTTCGAG	.	scavenged	Atlas-SNP
BAIAP3	8938	hgsc.bcm.edu	37	16	1384715	1384715	+	Missense_Mutation	SNP	T	T	C	rs200858324	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	79	138	0	0.411458	0	.	.	weak	.	BAIAP3	88	.	NM_003933	exon1	c.T53C	p.L18P	TGCACCTGGGCAC	.	PASS	Atlas-SNP
FBXO16	157574	hgsc.bcm.edu	37	8	28304769	28304769	+	Missense_Mutation	SNP	C	C	T	rs1390963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	55	158	0	0.423077	0	C|0.566;T|0.434	0.434	strong	.	FBXO16	29	.	NM_172366	exon7	c.G762A	p.M254I	TGGGGTCATTTGG	.	PASS	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	37	4	100512849	100512849	+	Silent	SNP	T	T	C	rs113557405	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	57	128	0	0.518182	0	T|0.971;C|0.029	0.029	strong	.	MTTP	127	.	NM_000253	exon7	c.T660C	p.Y220Y	CACCTATAAGATA	.	PASS	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16255799	16255799	+	Missense_Mutation	SNP	G	G	A	rs115566585	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	57	99	0	0.44186	0	G|0.998;A|0.002	0.002	strong	.	SPEN	374	.	NM_015001	exon11	c.G3064A	p.V1022M	CCTGACGTGTCCT	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237755076	237755076	+	Missense_Mutation	SNP	A	A	G	rs56229512	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	56	142	0	0.528302	0	A|0.988;G|0.012	0.012	strong	.	RYR2	1273	.	NM_001035	exon32	c.A4198G	p.S1400G	AGCACAAGCCATT	.	PASS	Atlas-SNP
TOR1A	1861	hgsc.bcm.edu	37	9	132580901	132580901	+	Missense_Mutation	SNP	C	C	G	rs1801968	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	59	119	0	0.433824	0	C|0.907;G|0.093	0.093	strong	.	TOR1A	36	.	NM_000113	exon4	c.G646C	p.D216H	CCACATCTGTGAT	.	PASS	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39464437	39464437	+	Missense_Mutation	SNP	G	G	C	rs72828116	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	53	105	0	0.576087	0	G|0.900;C|0.100	0.100	strong	KRTAP16-1,NS,carcinoma,0,1	KRTAP16-1	12	1	NM_001146182	exon1	c.C1069G	p.L357V	AGGAAAGAGGTCG	.	PASS	Atlas-SNP
GPAA1	8733	hgsc.bcm.edu	37	8	145139727	145139727	+	Silent	SNP	C	C	T	rs4977165	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	45	111	0	0.416667	0	C|0.892;T|0.108	0.108	strong	.	GPAA1	40	.	NM_003801	exon8	c.C1113T	p.I371I	CTCCATCGGCCTC	.	PASS	Atlas-SNP
PRPF40A	55660	hgsc.bcm.edu	37	2	153533260	153533260	+	Silent	SNP	G	G	A	rs11544718	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	296	134	308	0	0.452703	0	T|0.000;G|0.835;C|0.000;A|0.164	0.164	strong	PRPF40A_ENST00000410080,caecum,carcinoma,0,3	PRPF40A	149	3	NM_017892	exon10	c.C690T	p.A230A	GACTGGGGCTGTT	.	PASS	Atlas-SNP
HIF3A	64344	hgsc.bcm.edu	37	19	46823751	46823751	+	Silent	SNP	C	C	T	rs3764610	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	31	56	2	0.43662	0.0357143	C|0.840;N|0.000	.	strong	HIF3A_ENST00000377670,NS,carcinoma,+1,2	HIF3A	154	2	NM_152795	exon9	c.C1077T	p.H359H	GCAACACTCTCGC	.	scavenged	Atlas-SNP
EDNRA	1909	hgsc.bcm.edu	37	4	148461073	148461073	+	Silent	SNP	G	G	A	rs5334	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	74	120	0	0.521127	0	G|0.644;A|0.356	0.356	strong	EDNRA,NS,carcinoma,+1,2	EDNRA	48	2	NM_001957	exon6	c.G1005A	p.E335E	TAACGAGATGGAC	.	PASS	Atlas-SNP
PDE6C	5146	hgsc.bcm.edu	37	10	95389041	95389041	+	Silent	SNP	G	G	A	rs714550	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	47	222	0	0.270115	0	G|0.622;A|0.378	0.378	strong	.	PDE6C	97	.	NM_006204	exon8	c.G1098A	p.A366A	CCCTGCGGATGAA	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	37	2	160738677	160738677	+	Silent	SNP	G	G	A	rs16822581	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	41	127	0	0.366071	0	G|0.816;A|0.184	0.184	strong	.	LY75	151	.	NM_002349	exon7	c.C1204T	p.L402L	CTGCTAGAGAATG	.	PASS	Atlas-SNP
ATP11B	23200	hgsc.bcm.edu	37	3	182583338	182583338	+	Missense_Mutation	SNP	T	T	A	rs111933747	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	57	103	0	0.491379	0	T|0.979;A|0.021	0.021	strong	.	ATP11B	115	.	NM_014616	exon13	c.T1295A	p.I432N	AAGAAATTAATGG	.	PASS	Atlas-SNP
HMOX1	3162	hgsc.bcm.edu	37	22	35777185	35777185	+	Missense_Mutation	SNP	G	G	C	rs2071747	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	12	6	8	0	0.5	0	G|0.952;C|0.048	0.048	strong	.	HMOX1	32	.	NM_002133	exon1	c.G19C	p.D7H	CAACCCGACAGGC	.	PASS	Atlas-SNP
GSTT2	2953	hgsc.bcm.edu	37	22	24323227	24323227	+	Splice_Site	SNP	G	G	A	rs76498342	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	665	233	620	1	0.350376	0.0016129	G|0.873;A|0.127	0.127	strong	.	GSTT2	3	.	NM_000854	exon2	c.200+1G>A	.	CGAAAGGTGCCCT	.	PASS	Atlas-SNP
NEDD9	4739	hgsc.bcm.edu	37	6	11193860	11193860	+	Silent	SNP	G	G	A	rs16871074	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	63	140	0	0.484615	0	G|0.813;A|0.187	0.187	strong	NEDD9_ENST00000379446,NS,carcinoma,0,1	NEDD9	191	1	NM_001142393	exon4	c.C525T	p.D175D	ATAGACGTCCTTT	.	PASS	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	37	10	49420008	49420008	+	Missense_Mutation	SNP	T	T	C	rs1864345	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	28	75	0	0.363636	0	T|0.692;C|0.308	0.308	strong	.	FRMPD2	157	.	NM_001018071	exon13	c.A1600G	p.K534E	AGAACTTCAGCTC	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	37	1	17087593	17087593	+	Silent	SNP	C	C	T	rs12145944	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	777	130	728	1	0.16731	0.00137363	C|0.942;T|0.058	0.058	strong	Q13209_HUMAN,right_upper_lobe,carcinoma,0,2	.	.	2	NM_001271733	exon2	c.G72A	p.Q24Q	CGAGCGCTGCCCT	.	PASS	Atlas-SNP
RPS15	6209	hgsc.bcm.edu	37	19	1440374	1440374	+	Silent	SNP	C	C	T	rs139332437	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	87	186	0	0.511765	0	C|0.998;T|0.002	0.002	strong	.	RPS15	11	.	NM_001018	exon4	c.C351T	p.G117G	CCTGGGCGAGTTC	.	PASS	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225670901	225670901	+	Missense_Mutation	SNP	G	G	C	rs4674941	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	51	86	0	0.455357	0	G|0.790;C|0.209	0.209	strong	.	DOCK10	308	.	NM_014689	exon34	c.C3756G	p.I1252M	ATGTTTGATAGCT	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	37	2	160294842	160294842	+	Missense_Mutation	SNP	A	A	G	rs3213790	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	91	190	0	0.473958	0	A|0.860;G|0.140	0.140	strong	.	BAZ2B	196	.	NM_013450	exon8	c.T1265C	p.L422S	GTCAATAAACTAG	.	PASS	Atlas-SNP
OR9Q1	219956	hgsc.bcm.edu	37	11	57947264	57947264	+	Silent	SNP	C	C	G	rs11229273	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	387	209	315	0	0.540052	0	C|0.747;G|0.253	0.253	strong	.	OR9Q1	60	.	NM_001005212	exon3	c.C348G	p.A116A	CTTGGCCCTCATG	.	PASS	Atlas-SNP
COX6C	1345	hgsc.bcm.edu	37	8	100899793	100899793	+	Silent	SNP	G	G	A	rs1130569	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	20	70	1	0.322581	0.0142857	G|0.733;A|0.267	0.267	strong	COX6C_ENST00000520468,NS,carcinoma,0,1	COX6C	25	1	NM_004374	exon3	c.C168T	p.Y56Y	GACATCGTAGTTT	.	scavenged	Atlas-SNP
C6orf132	647024	hgsc.bcm.edu	37	6	42074925	42074925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	8	4	3	0	0.5	0	.	.	none	.	C6orf132	48	.	NM_001164446	exon4	c.C725T	p.P242L	GTGTGAGGAGATG	.	PASS	Atlas-SNP
TMEM9	252839	hgsc.bcm.edu	37	1	201115964	201115964	+	Silent	SNP	G	G	A	rs139286836	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	42	91	0	0.525	0	G|0.994;A|0.006	0.006	strong	.	TMEM9	12	.	NM_016456	exon4	c.C171T	p.H57H	CACCACGTGCAGG	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152327502	152327502	+	Silent	SNP	A	A	G	rs138997916	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	19	145	1	0.22619	0.00689655	A|0.902;G|0.098	0.098	strong	FLG2,NS,carcinoma,0,2	FLG2	431	2	NM_001014342	exon3	c.T2760C	p.S920S	ATAGCTAGACTGA	.	scavenged	Atlas-SNP
NOM1	64434	hgsc.bcm.edu	37	7	156742965	156742965	+	Silent	SNP	G	G	C	rs61734937	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	16	17	0	0.516129	0	G|0.806;C|0.194	0.194	strong	.	NOM1	73	.	NM_138400	exon1	c.G534C	p.A178A	AGCGGCGAACGAG	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240341268	240341268	+	Silent	SNP	A	A	G	rs3765588	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	49	92	0	0.5	0	A|0.768;G|0.232	0.232	strong	.	FMN2	451	.	NM_020066	exon3	c.A1830G	p.S610S	ACACTCATTGGAC	.	PASS	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	37	5	65350432	65350432	+	Missense_Mutation	SNP	C	C	T	rs369672448		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	2	101	0	0.0168067	0	.	.	weak	ERBB2IP,NS,carcinoma,-1,1	ERBB2IP	120	1	NM_001253699	exon21	c.C3286T	p.R1096W	ACAAGGCGGGCTC	.	scavenged	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133541444	133541444	+	Silent	SNP	T	T	C	rs12691829	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	180	149	1	0.989011	0.00671141	T|0.320;C|0.680	0.680	strong	.	NCKAP5	322	.	NM_207363	exon14	c.A2940G	p.P980P	AATAACTGGAGCA	.	PASS	Atlas-SNP
PARPBP	55010	hgsc.bcm.edu	37	12	102558369	102558369	+	Missense_Mutation	SNP	C	C	A	rs75438625	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	30	81	0	0.333333	0	C|0.974;A|0.026	0.026	strong	.	PARPBP	40	.	NM_017915	exon5	c.C649A	p.Q217K	GAGAAACAAATGT	.	PASS	Atlas-SNP
ACAA1	30	hgsc.bcm.edu	37	3	38170810	38170810	+	Missense_Mutation	SNP	C	C	G	rs156265	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	209	90	171	0	0.430622	0	C|0.865;G|0.135	0.135	strong	.	ACAA1	32	.	NM_001607	exon6	c.G516C	p.E172D	GGCCTTCTCCTTC	.	PASS	Atlas-SNP
AQP3	360	hgsc.bcm.edu	37	9	33442952	33442952	+	Silent	SNP	G	G	A	rs2228332	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	61	163	0	0.406667	0	G|0.344;N|0.000	.	strong	.	AQP3	18	.	NM_004925	exon4	c.C390T	p.F130F	GTCGGCGAAGTGC	.	PASS	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	37	11	133814191	133814191	+	Silent	SNP	A	A	G	rs595986	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	130	137	1	1	0.00729927	A|0.489;G|0.511	0.511	strong	.	IGSF9B	290	.	NM_014987	exon3	c.T333C	p.Y111Y	GCACTCATACCAG	.	PASS	Atlas-SNP
OSBPL9	114883	hgsc.bcm.edu	37	1	52250216	52250216	+	Silent	SNP	C	C	T	rs144748323		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	141	74	94	0	0.524823	0	C|1.000;T|0.000	0.000	weak	.	OSBPL9	192	.	NM_148909	exon20	c.C1821T	p.F607F	ACCCTTCTATGGG	.	PASS	Atlas-SNP
CEP89	84902	hgsc.bcm.edu	37	19	33439187	33439187	+	Missense_Mutation	SNP	G	G	A	rs3764633	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	25	63	0	0.431034	0	G|0.806;A|0.194	0.194	strong	.	CEP89	82	.	NM_032816	exon5	c.C580T	p.R194W	GTGTCCGCTGTGG	.	PASS	Atlas-SNP
CAMK2B	816	hgsc.bcm.edu	37	7	44282877	44282877	+	Silent	SNP	A	A	G	rs11542227	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	48	119	0	0.360902	0	A|0.735;G|0.265	0.265	strong	.	CAMK2B	56	.	NM_172081	exon8	c.T573C	p.Y191Y	CTTGCCATACGCC	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39253960	39253960	+	Missense_Mutation	SNP	C	C	T	rs80168553	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	19	75	0	0.311475	0	C|0.500;T|0.500	0.500	strong	KRTAP4-8,right_lower_lobe,carcinoma,0,2	KRTAP4-8	57	2	NM_031960	exon1	c.G377A	p.R126H	CTGGGGCGGCAGC	.	PASS	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	37	1	177001896	177001896	+	Silent	SNP	C	C	G	rs2076069	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	12	51	0	0.272727	0	C|0.864;G|0.136	0.136	strong	.	ASTN1	314	.	NM_004319	exon3	c.G561C	p.P187P	GGGCTGCGGGACC	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51947257	51947257	+	Silent	SNP	G	G	A	rs6901799	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	59	114	0	0.531532	0	G|0.920;A|0.080	0.080	strong	.	PKHD1	927	.	NM_170724	exon4	c.C214T	p.L72L	TCCGCAGTGCGGG	.	PASS	Atlas-SNP
OAS3	4940	hgsc.bcm.edu	37	12	113398919	113398919	+	Silent	SNP	G	G	A	rs2072136	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	42	125	0	0.451613	0	G|0.696;N|0.000	.	strong	.	OAS3	63	.	NM_006187	exon8	c.G1701A	p.S567S	CTACTCGAGGCTC	.	PASS	Atlas-SNP
ODF3L2	284451	hgsc.bcm.edu	37	19	464310	464310	+	Missense_Mutation	SNP	A	A	G	rs34551779	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	99	93	0	0.980198	0	A|0.527;G|0.473	0.473	strong	.	ODF3L2	18	.	NM_182577	exon4	c.T404C	p.V135A	TGGCGCACAGGGG	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152081921	152081921	+	Missense_Mutation	SNP	G	G	C	rs2496253	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	188	83	232	0	0.441489	0	G|0.499;C|0.501	0.501	strong	.	TCHH	275	.	NM_007113	exon3	c.C3772G	p.L1258V	CGCGCAGCTGGGA	.	PASS	Atlas-SNP
OR8S1	341568	hgsc.bcm.edu	37	12	48919793	48919793	+	Missense_Mutation	SNP	T	T	C	rs2705143	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	157	156	149	0	0.993631	0	T|0.781;C|0.219	0.219	strong	.	OR8S1	47	.	NM_001005203	exon1	c.T379C	p.C127R	GCCATCTGCCGCC	.	PASS	Atlas-SNP
CCDC93	54520	hgsc.bcm.edu	37	2	118743630	118743630	+	Missense_Mutation	SNP	G	G	A	rs33975708	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	86	154	0	0.551282	0	G|0.938;A|0.062	0.062	strong	.	CCDC93	70	.	NM_019044	exon7	c.C535T	p.R179C	TCCGACGGGGCTT	.	PASS	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53856409	53856409	+	Silent	SNP	A	A	G	rs145598405	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	61	94	0	0.539823	0	A|0.983;G|0.017	0.017	strong	.	ZNF845	101	.	NM_138374	exon4	c.A2481G	p.G827G	TAGTGGAGAGAAA	.	PASS	Atlas-SNP
TBX6	6911	hgsc.bcm.edu	37	16	30100401	30100401	+	Missense_Mutation	SNP	C	C	T	rs56098093	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	45	94	0	0.5625	0	C|0.997;T|0.003	0.003	strong	.	TBX6	29	.	NM_004608	exon4	c.G484A	p.G162S	CCTTGCCGCTGGG	.	PASS	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	37	11	3752727	3752727	+	Silent	SNP	T	T	G	rs61751339	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	343	165	304	0	0.48105	0	T|0.946;G|0.054	0.054	strong	.	NUP98	149	.	NM_005387	exon14	c.A1675C	p.R559R	GGACTCTAGTGGC	.	PASS	Atlas-SNP
TATDN3	128387	hgsc.bcm.edu	37	1	212965284	212965284	+	Silent	SNP	C	C	G	rs61736926	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	112	159	3	0.580311	0.0188679	C|0.772;G|0.228	0.228	strong	TATDN3,NS,carcinoma,0,1	TATDN3	23	1	NM_001146170	exon1	c.C21G	p.G7G	CGTAGGCTTGGTG	.	scavenged	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	37	19	55699514	55699514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	2	104	0	0.016	0	.	.	none	PTPRH,NS,carcinoma,0,1	PTPRH	139	1	NM_002842	exon13	c.G2407T	p.E803X	AGTCTTCAGCTGG	.	scavenged	Atlas-SNP
B4GALT5	9334	hgsc.bcm.edu	37	20	48252914	48252914	+	Missense_Mutation	SNP	C	C	T	rs235035	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	226	110	245	0	0.486726	0	C|0.892;G|0.000;T|0.108	0.108	strong	.	B4GALT5	40	.	NM_004776	exon9	c.G1102A	p.D368N	AGGCGTCGTATGT	.	PASS	Atlas-SNP
AIRE	326	hgsc.bcm.edu	37	21	45712977	45712977	+	Silent	SNP	T	T	C	rs1800521	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	25	51	0	0.568182	0	T|0.622;C|0.378	0.378	strong	AIRE_ENST00000397994,NS,carcinoma,0,2	AIRE	61	2	NM_000383	exon10	c.T1197C	p.A399A	GCCGGCTCCGCCT	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12409522	12409522	+	Missense_Mutation	SNP	A	A	G	rs3823844	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	71	156	0	0.5	0	A|0.827;G|0.173	0.173	strong	.	VWDE	123	.	NM_001135924	exon12	c.T2410C	p.Y804H	TGCTATACTCGGT	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152187276	152187276	+	Missense_Mutation	SNP	C	C	T	rs199952550	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	712	50	836	1	0.0702247	0.00119617	C|0.993;T|0.007	0.007	strong	HRNR,NS,carcinoma,0,1	HRNR	403	1	NM_001009931	exon3	c.G6829A	p.G2277S	GCTGACCGTGGCT	.	scavenged	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7818056	7818056	+	Missense_Mutation	SNP	T	T	C	rs73406604	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	63	54	0	0.984375	0	T|0.738;C|0.262	0.262	strong	OR5P2,brain,glioma,0,2	OR5P2	68	2	NM_153444	exon1	c.A434G	p.Y145C	GCTATGTAAACTA	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126238924	126238924	+	Missense_Mutation	SNP	A	A	T	rs6847454	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	143	118	1	1	0.00847458	A|0.518;T|0.482	0.482	strong	.	FAT4	1752	.	NM_024582	exon1	c.A1358T	p.Q453L	CAGTCCAGGCGCG	.	PASS	Atlas-SNP
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45993727	45993727	+	Missense_Mutation	SNP	A	A	C	rs76503724		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	33	87	5	0.289474	0.0574713	.	.	weak	KRTAP10-4,NS,carcinoma,0,1	KRTAP10-4	44	1	NM_198687	exon1	c.A92C	p.D31A	TGGACGACTGCCC	.	scavenged	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	37	7	92732769	92732769	+	Missense_Mutation	SNP	T	T	C	rs140921998	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	28	80	0	0.482759	0	T|0.981;C|0.019	0.019	strong	.	SAMD9	239	.	NM_001193307	exon2	c.A2642G	p.D881G	TAAAAATCCTCAA	.	PASS	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	37	1	220330672	220330672	+	Silent	SNP	C	C	T	rs11547779	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	73	173	0	0.405556	0	T|0.069;C|0.931;A|0.000	0.069	strong	.	RAB3GAP2	120	.	NM_012414	exon31	c.G3495A	p.L1165L	TGCATACAAGATG	.	PASS	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	37	14	21109671	21109671	+	Silent	SNP	A	A	G	rs11627574	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	115	86	0	1	0	A|0.484;G|0.516	0.516	strong	.	OR6S1	49	.	NM_001001968	exon1	c.T180C	p.P60P	GTACATAGGGGTC	.	PASS	Atlas-SNP
PRKCQ	5588	hgsc.bcm.edu	37	10	6527143	6527143	+	Missense_Mutation	SNP	G	G	A	rs2236379	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	33	59	0	0.568965	0	G|0.675;T|0.002	.	strong	PRKCQ,NS,carcinoma,0,1	PRKCQ	113	1	NM_006257	exon10	c.C989T	p.P330L	CATGGCGGCCTTG	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4714929	4714929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	44	91	1	0.473118	0.010989	.	.	none	ITPR1_ENST00000357086,NS,carcinoma,0,3	ITPR1	659	3	NM_001099952	exon21	c.G2314A	p.E772K	TCTGACGAGAACC	.	scavenged	Atlas-SNP
ATXN7	6314	hgsc.bcm.edu	37	3	63967900	63967900	+	Missense_Mutation	SNP	A	A	G	rs1053338	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	76	132	0	0.426966	0	A|0.876;G|0.124	0.124	strong	.	ATXN7	126	.	NM_000333	exon7	c.A791G	p.K264R	ATCCGAAAATGGA	.	PASS	Atlas-SNP
TMC4	147798	hgsc.bcm.edu	37	19	54676763	54676763	+	Missense_Mutation	SNP	C	C	T	rs641738	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	32	81	0	0.432432	0	C|0.615;T|0.385	0.385	strong	.	TMC4	89	.	NM_001145303	exon1	c.G50A	p.G17E	AGCCACCCCCTAG	.	PASS	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	37	12	99139552	99139552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	38	106	0	0.463415	0	.	.	none	.	ANKS1B	180	.	NM_181670	exon13	c.G1498A	p.G500S	TAATGCCCCTCTT	.	PASS	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	37	12	662695	662695	+	Missense_Mutation	SNP	C	C	T	rs151321644	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	20	42	0	0.571429	0	C|0.996;T|0.004	0.004	strong	.	B4GALNT3	64	.	NM_173593	exon14	c.C1606T	p.H536Y	CCTGGGCACCCTG	.	PASS	Atlas-SNP
SH3BP2	6452	hgsc.bcm.edu	37	4	2826912	2826912	+	Silent	SNP	C	C	G	rs16843413	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	63	161	0	0.45	0	C|0.875;G|0.125	0.125	strong	.	SH3BP2	43	.	NM_001145856	exon5	c.C588G	p.P196P	CCTGCCCTTGGAC	.	PASS	Atlas-SNP
C9orf24	84688	hgsc.bcm.edu	37	9	34379692	34379692	+	Missense_Mutation	SNP	C	C	T	rs3737242	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	72	148	0	0.461538	0	C|0.860;T|0.140	0.140	strong	.	C9orf24	15	.	NM_001252195	exon4	c.G341A	p.C114Y	ACAGCACACTGCA	.	PASS	Atlas-SNP
CSF3	1440	hgsc.bcm.edu	37	17	38173143	38173143	+	Silent	SNP	G	G	A	rs25645	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	80	65	0	1	0	G|0.705;A|0.295	0.295	strong	.	CSF3	9	.	NM_000759	exon5	c.G555A	p.L185L	GGTCCTGGTTGCC	.	PASS	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29553485	29553485	+	Silent	SNP	G	G	A	rs2285892	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	25	39	0	0.378788	0	G|0.568;A|0.432	0.432	strong	.	NF1	1586	.	NM_000267	exon18	c.G2034A	p.P678P	CCCCCCGATTTGC	.	PASS	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	37	5	39381651	39381651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	52	167	0	0.379562	0	.	.	none	.	DAB2	124	.	NM_001343	exon11	c.C1409T	p.A470V	GGTGACGCCTGGC	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	37	6	117622233	117622233	+	Missense_Mutation	SNP	C	C	T	rs529038	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	36	71	0	0.5625	0	T|0.172;C|0.828	0.172	strong	ROS1_ENST00000368508,NS,carcinoma,0,1	ROS1	728	1	NM_002944	exon42	c.G6637A	p.D2213N	GTTGGTCCTGAAT	.	PASS	Atlas-SNP
ST3GAL1	6482	hgsc.bcm.edu	37	8	134474148	134474148	+	Silent	SNP	C	C	T	rs1048479	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	140	138	1	1	0.00724638	C|0.549;T|0.451	0.451	strong	.	ST3GAL1	39	.	NM_173344	exon9	c.G819A	p.S273S	GATGACCGAGAGG	.	PASS	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	37	20	34243017	34243017	+	Silent	SNP	C	C	T	rs6121015	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	268	127	262	1	0.473881	0.00381679	C|0.753;T|0.247	0.247	strong	.	RBM12	93	.	NM_001198840	exon2	c.G228A	p.K76K	TTCCGTCTTACTA	.	PASS	Atlas-SNP
DHDH	27294	hgsc.bcm.edu	37	19	49442933	49442933	+	Silent	SNP	T	T	C	rs2270939	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	38	38	0	0.974359	0	T|0.623;C|0.377	0.377	strong	.	DHDH	35	.	NM_014475	exon4	c.T594C	p.S198S	GATTTCTGTCGTG	.	PASS	Atlas-SNP
PLCD4	84812	hgsc.bcm.edu	37	2	219492924	219492924	+	Silent	SNP	T	T	C	rs612874	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	127	151	0	1	0	T|0.503;C|0.497	0.497	strong	.	PLCD4	51	.	NM_032726	exon7	c.T945C	p.C315C	GCTTTGTGGCCAG	.	PASS	Atlas-SNP
PGLYRP3	114771	hgsc.bcm.edu	37	1	153279696	153279696	+	Missense_Mutation	SNP	C	C	T	rs55991125	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	46	75	0	0.474227	0	C|0.967;T|0.033	0.033	strong	.	PGLYRP3	55	.	NM_052891	exon2	c.G103A	p.A35T	TGCAGGCGAGCGG	.	PASS	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124841221	124841221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	3	219	0	0.0125	0	.	.	none	NCOR2_ENST00000405201,NS,carcinoma,+2,2	NCOR2	475	2	NM_006312	exon25	c.C3208T	p.P1070S	GGTCCGGGGCATG	.	scavenged	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	37	4	23815522	23815522	+	Silent	SNP	C	C	T	rs3755863	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	124	119	1	0.992	0.00840336	C|0.640;T|0.360	0.360	strong	PPARGC1A,colon,carcinoma,0,1	PPARGC1A	129	1	NM_013261	exon8	c.G1584A	p.T528T	GGATTGCGTGCCA	.	PASS	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	37	1	113243048	113243048	+	Silent	SNP	C	C	T	rs6679	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	73	168	0	0.45625	0	C|0.753;T|0.247	0.247	strong	.	MOV10	74	.	NM_020963	exon21	c.C2931T	p.S977S	CCACAGCCATGAC	.	PASS	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	37	1	186273994	186273994	+	Missense_Mutation	SNP	C	C	T	rs2273779	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	68	183	0	0.407186	0	C|0.726;T|0.274	0.274	strong	.	PRG4	259	.	NM_005807	exon6	c.C538T	p.R180W	ACAATTCGGAAAA	.	PASS	Atlas-SNP
RBP5	83758	hgsc.bcm.edu	37	12	7280880	7280880	+	Missense_Mutation	SNP	C	C	G	rs7969705	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	103	186	0	0.451754	0	C|0.933;G|0.067	0.067	strong	.	RBP5	20	.	NM_031491	exon2	c.G208C	p.E70Q	CAAACTCCACTCC	.	PASS	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	37	9	118949998	118949998	+	Silent	SNP	C	C	T	rs12375498	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	106	96	0	1	0	C|0.836;T|0.164	0.164	strong	.	PAPPA	243	.	NM_002581	exon2	c.C981T	p.C327C	TCTGTGCGGACAG	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254126	39254126	+	Missense_Mutation	SNP	C	C	T	rs202107241	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	12	59	1	0.2	0.0169492	.	.	weak	KRTAP4-8,colon,carcinoma,+2,2	KRTAP4-8	57	2	NM_031960	exon1	c.G211A	p.V71M	TGGACACACAGCA	.	scavenged	Atlas-SNP
MMP9	4318	hgsc.bcm.edu	37	20	44640225	44640225	+	Missense_Mutation	SNP	A	A	G	rs17576	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	31	66	0	0.430556	0	A|0.578;G|0.422	0.422	strong	.	MMP9	84	.	NM_004994	exon6	c.A836G	p.Q279R	ACACCCAGGACGG	.	PASS	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	37	6	32163541	32163541	+	Silent	SNP	A	A	C	rs1044507	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	30	20	0	0.967742	0	A|0.974;C|0.026	0.026	strong	.	NOTCH4	201	.	NM_004557	exon30	c.T5685G	p.S1895S	GCAATGAGAATAG	.	PASS	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	37	12	114383651	114383651	+	Silent	SNP	C	C	T	rs12321179	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	70	126	0	0.47619	0	C|0.823;T|0.177	0.177	strong	RBM19,NS,carcinoma,0,1	RBM19	117	1	NM_001146699	exon13	c.G1608A	p.K536K	TTGACTCTTGGTG	.	PASS	Atlas-SNP
IDI2	91734	hgsc.bcm.edu	37	10	1066710	1066710	+	Silent	SNP	C	C	T	rs34407608	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	53	100	0	0.46087	0	C|0.912;T|0.088	0.088	strong	.	IDI2	20	.	NM_033261	exon4	c.G363A	p.E121E	TACCTGCTCCCCA	.	PASS	Atlas-SNP
ART1	417	hgsc.bcm.edu	37	11	3681051	3681051	+	Missense_Mutation	SNP	C	C	G	rs61998205	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	25	61	0	0.454545	0	C|0.931;G|0.068;T|0.000	0.068	strong	.	ART1	21	.	NM_004314	exon3	c.C302G	p.T101S	GCCCCACCCGTCC	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367	bycluster;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	12	84	0	0.15	0	A|0.646;T|0.354	0.354	strong	KRTAP4-5,colon,carcinoma,0,3	KRTAP4-5	34	3	NM_033188	exon1	c.T235A	p.C79S	AGCAGCAGGGGCG	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133554288	133554288	+	Silent	SNP	A	A	G	rs1868076	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	77	80	0	1	0	A|0.307;G|0.693	0.693	strong	.	NCKAP5	322	.	NM_207481	exon12	c.T822C	p.R274R	CAAGAGACGTGAG	.	PASS	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	37	12	52681056	52681056	+	Silent	SNP	C	C	T	rs4761856	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	124	146	0	1	0	C|0.673;T|0.327	0.327	strong	.	KRT81	46	.	NM_002281	exon7	c.G1077A	p.A359A	GAGGGCCGCCTCA	.	PASS	Atlas-SNP
GPRC5B	51704	hgsc.bcm.edu	37	16	19883364	19883364	+	Silent	SNP	G	G	A	rs61742688	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	35	62	0	0.5	0	A|0.107;C|0.000;G|0.893	0.107	strong	.	GPRC5B	54	.	NM_016235	exon2	c.C804T	p.N268N	GGGGTCGTTCCAG	.	PASS	Atlas-SNP
PDE9A	5152	hgsc.bcm.edu	37	21	44180443	44180443	+	Silent	SNP	C	C	T	rs13047953	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	16	22	0	0.592593	0	C|0.675;T|0.325	0.325	strong	PDE9A,NS,carcinoma,0,1	PDE9A	69	1	NM_002606	exon12	c.C903T	p.C301C	GTTCTGCGTCCAC	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152190945	152190945	+	Missense_Mutation	SNP	C	C	T	rs77376932	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	342	133	323	0	0.388889	0	C|0.852;T|0.148	0.148	strong	.	HRNR	403	.	NM_001009931	exon3	c.G3160A	p.E1054K	GAGACTCTCGGTG	.	PASS	Atlas-SNP
ACTL7B	10880	hgsc.bcm.edu	37	9	111618163	111618163	+	Silent	SNP	G	G	A	rs3750468	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	25	54	0	0.367647	0	G|0.783;A|0.217	0.217	strong	.	ACTL7B	57	.	NM_006686	exon1	c.C48T	p.D16D	TCCAGGGTCACCC	.	PASS	Atlas-SNP
FUNDC1	139341	hgsc.bcm.edu	37	X	44401295	44401295	+	Silent	SNP	T	T	G	rs41298452	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	221	176	1	0.995495	0.00568182	T|0.917;G|0.083	0.083	strong	.	FUNDC1	15	.	NM_173794	exon2	c.A81C	p.A27A	TCTTCTTGCATAC	.	PASS	Atlas-SNP
IFRD1	3475	hgsc.bcm.edu	37	7	112112892	112112892	+	Silent	SNP	G	G	A	rs11542468	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	60	156	0	0.441176	0	G|0.940;A|0.060	0.060	strong	.	IFRD1	46	.	NM_001007245	exon12	c.G1242A	p.T414T	TAAAACGATGAAG	.	PASS	Atlas-SNP
CAPN9	10753	hgsc.bcm.edu	37	1	230898494	230898494	+	Silent	SNP	C	C	T	rs2282319	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	51	78	0	0.53125	0	C|0.643;N|0.000	.	strong	CAPN9,NS,carcinoma,0,1	CAPN9	116	1	NM_006615	exon4	c.C498T	p.N166N	CCACAACGAGTTC	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237947171	237947171	+	Silent	SNP	G	G	A	rs41267517	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	44	94	0	0.4	0	G|0.999;A|0.001	0.001	weak	RYR2,NS,carcinoma,0,1	RYR2	1273	1	NM_001035	exon90	c.G12159A	p.E4053E	GATGGAGAGCCAT	.	PASS	Atlas-SNP
CTBP2	1488	hgsc.bcm.edu	37	10	126715154	126715154	+	Missense_Mutation	SNP	A	A	G	rs3781412	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	63	60	0	1	0	A|0.644;G|0.356	0.356	strong	.	CTBP2	100	.	NM_022802	exon1	c.T1175C	p.L392P	GTCTGCAGAGGAG	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3740658	3740658	+	Silent	SNP	T	T	G	rs10416362	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	17	64	0	0.377778	0	T|0.478;G|0.522	0.522	strong	TJP3,NS,carcinoma,0,1	TJP3	79	1	NM_001267561	exon14	c.T1767G	p.L589L	GGGTCTTCGTCGA	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	37	17	78262161	78262161	+	Missense_Mutation	SNP	T	T	C	rs17857135	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	48	92	0	0.578313	0	T|0.785;C|0.215	0.215	strong	RNF213_ENST00000456466,NS,carcinoma,0,6	RNF213	766	6	NM_001256071	exon4	c.T809C	p.M270T	CCTCTATGGTGAG	.	PASS	Atlas-SNP
C2CD2	25966	hgsc.bcm.edu	37	21	43327117	43327117	+	Silent	SNP	C	C	T	rs2277795	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	58	75	0	0.568627	0	C|0.714;T|0.286	0.286	strong	.	C2CD2	47	.	NM_015500	exon10	c.G1302A	p.A434A	CGGGGACGCCCTC	.	PASS	Atlas-SNP
PRDM2	7799	hgsc.bcm.edu	37	1	14143003	14143003	+	Missense_Mutation	SNP	A	A	G	rs1046331	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	120	103	0	1	0	A|0.147;G|0.853	0.853	strong	.	PRDM2	147	.	NM_001135610	exon7	c.A593G	p.Q198R	AGCTCCAGCTGCA	.	PASS	Atlas-SNP
UIMC1	51720	hgsc.bcm.edu	37	5	176382995	176382995	+	Missense_Mutation	SNP	G	G	A	rs3733876	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	92	228	0	0.418182	0	G|0.879;A|0.121	0.121	strong	.	UIMC1	55	.	NM_016290	exon8	c.C1304T	p.P435L	CTCTCTGGCATAA	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43924219	43924219	+	Silent	SNP	T	T	C	rs12373124	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	57	47	0	0.966102	0	A|0.854;G|0.146	.	strong	.	.	.	.	NM_175882	exon1	c.T1947C	p.H649H	GGGCCATGTCCAT	.	PASS	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	37	11	5629607	5629607	+	Silent	SNP	G	G	A	rs10769121	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	65	157	0	0.448276	0	G|0.632;A|0.368	0.368	strong	TRIM6-TRIM34,NS,carcinoma,0,2	TRIM6-TRIM34	68	2	NM_001003819	exon5	c.G840A	p.V280V	GGATGTGAGTGAT	.	PASS	Atlas-SNP
GGT1	2678	hgsc.bcm.edu	37	22	25023419	25023419	+	Silent	SNP	C	C	T	rs202087650	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	348	12	367	0	0.0344828	0	C|0.989;T|0.011	0.011	strong	GGT1,NS,carcinoma,0,2	GGT1	68	2	NM_013430	exon12	c.C1041T	p.S347S	GACCTCCGAGTTC	.	scavenged	Atlas-SNP
OR2AK2	391191	hgsc.bcm.edu	37	1	248129240	248129240	+	Missense_Mutation	SNP	G	G	A	rs4478844	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	221	238	1	1	0.00420168	G|0.537;A|0.463	0.463	strong	.	OR2AK2	90	.	NM_001004491	exon1	c.G607A	p.V203M	TCATTGGTGTGTC	.	PASS	Atlas-SNP
OR4C16	219428	hgsc.bcm.edu	37	11	55339702	55339702	+	Silent	SNP	C	C	T	rs34100491	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	77	143	0	0.557971	0	C|0.816;T|0.184	0.184	strong	.	OR4C16	104	.	NM_001004701	exon1	c.C99T	p.Y33Y	TCTCTACTTGGGA	.	PASS	Atlas-SNP
ASPG	374569	hgsc.bcm.edu	37	14	104563932	104563932	+	Silent	SNP	G	G	T	rs1465163	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	76	109	0	0.542857	0	G|0.778;T|0.222	0.222	strong	Q86U10_HUMAN,NS,carcinoma,0,2	ASPG	34	2	NM_001080464	exon5	c.G471T	p.L157L	GAACCTGCTGGGG	.	PASS	Atlas-SNP
ETNK2	55224	hgsc.bcm.edu	37	1	204120952	204120952	+	Missense_Mutation	SNP	G	G	T	rs3737655	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	11	9	12	0	0.818182	0	G|0.858;T|0.142	0.142	strong	ETNK2_ENST00000367202,caecum,carcinoma,0,19	ETNK2	48	19	NM_018208	exon1	c.C29A	p.P10Q	GCGCGCGGCTGAG	.	PASS	Atlas-SNP
TTLL2	83887	hgsc.bcm.edu	37	6	167754702	167754702	+	Silent	SNP	C	C	T	rs909546	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	39	94	0	0.464286	0	C|0.503;A|0.003	.	strong	TTLL2,NS,carcinoma,0,1	TTLL2	82	1	NM_031949	exon3	c.C1314T	p.D438D	CATCGACGCTGCA	.	PASS	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	37	22	45258457	45258457	+	Silent	SNP	A	A	G	rs8881	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	27	62	0	0.529412	0	A|0.917;G|0.083	0.083	strong	.	PRR5-ARHGAP8	53	.	NM_181334	exon15	c.A1650G	p.A550A	GATGGCAGCCAGA	.	PASS	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	37	14	86089315	86089315	+	Missense_Mutation	SNP	G	G	A	rs17646457	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	264	122	291	2	0.462121	0.00687285	G|0.899;A|0.101	0.101	strong	FLRT2,NS,carcinoma,0,1	FLRT2	168	1	NM_013231	exon2	c.G1457A	p.R486Q	AGCCCCGATCCAC	.	scavenged	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	37	18	74680208	74680208	+	Silent	SNP	C	C	T	rs73968242	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	30	72	0	0.454545	0	C|0.596;T|0.404	0.404	strong	.	ZNF236	325	.	NM_007345	exon31	c.C5451T	p.D1817D	GCAGGACGGGGAG	.	PASS	Atlas-SNP
LEFTY1	10637	hgsc.bcm.edu	37	1	226074563	226074563	+	Missense_Mutation	SNP	T	T	G	rs360057	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	252	121	236	1	0.480159	0.00423729	T|0.711;G|0.289	0.289	strong	LEFTY1,colon,carcinoma,0,1	LEFTY1	30	1	NM_020997	exon4	c.A965C	p.D322A	AGCGAGTCAGTCT	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100675976	100675976	+	Missense_Mutation	SNP	G	G	A	rs56103274	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	82	99	0	0.97619	0	G|0.600;A|0.400	0.400	strong	.	MUC17	804	.	NM_001040105	exon3	c.G1279A	p.A427T	ACCACTGCTAGTG	.	PASS	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	37	8	107754473	107754473	+	Silent	SNP	G	G	A	rs1681904	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	166	198	0	0.994012	0	G|0.627;A|0.373	0.373	strong	.	OXR1	190	.	NM_001198532	exon14	c.G2343A	p.E781E	ATCTGAGCCACTG	.	PASS	Atlas-SNP
ERI2	112479	hgsc.bcm.edu	37	16	20802172	20802172	+	Missense_Mutation	SNP	C	C	T	rs2301770	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	90	197	0	0.523256	0	C|0.906;T|0.094	0.094	strong	.	ERI2	50	.	NM_080663	exon9	c.G815A	p.G272D	AAATACCCAAATT	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50528916	50528916	+	Silent	SNP	C	C	T	rs9617018	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	17	73	0	0.354167	0	C|0.844;T|0.156	0.156	strong	.	MOV10L1	238	.	NM_001164105	exon1	c.C12T	p.L4L	GTTCCTCCCTGTC	.	PASS	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	37	18	29795076	29795076	+	Silent	SNP	T	T	C	rs173032	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	60	119	0	0.437956	0	T|0.299;C|0.701	0.701	strong	.	MEP1B	54	.	NM_005925	exon12	c.T1611C	p.S537S	GCCTTCTAAAGTG	.	PASS	Atlas-SNP
GDF15	9518	hgsc.bcm.edu	37	19	18497141	18497141	+	Missense_Mutation	SNP	T	T	A	rs1059369	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	44	118	0	0.419048	0	T|0.760;N|0.000	.	strong	.	GDF15	31	.	NM_004864	exon1	c.T142A	p.S48T	TTGCACTCCGAAG	.	PASS	Atlas-SNP
MED13	9969	hgsc.bcm.edu	37	17	60040329	60040329	+	Silent	SNP	C	C	T	rs2278812	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	33	41	0	0.6875	0	C|0.741;T|0.259	0.259	strong	MED13,colon,carcinoma,0,1	MED13	181	1	NM_005121	exon21	c.G4848A	p.T1616T	ATCCATCGTGCTA	.	PASS	Atlas-SNP
NRBP2	340371	hgsc.bcm.edu	37	8	144917880	144917880	+	Silent	SNP	G	G	A	rs72693365	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	30	42	0	0.681818	0	G|0.942;A|0.058	0.058	strong	.	NRBP2	20	.	NM_178564	exon18	c.C1458T	p.A486A	GAAGGCGGCCAGC	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228564884	228564884	+	Missense_Mutation	SNP	G	G	A	rs56174824	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	23	43	0	0.522727	0	G|0.852;A|0.148	0.148	strong	.	OBSCN	2142	.	NM_001271223	exon112	c.G26042A	p.R8681H	GCCTGCGCCACCC	.	PASS	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	37	19	2226676	2226676	+	Missense_Mutation	SNP	G	G	A	rs3815308	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	7	5	6	0	0.714286	0	G|0.722;A|0.278	0.278	strong	.	DOT1L	205	.	NM_032482	exon27	c.G4156A	p.G1386S	AGCCGCGGCAAGG	.	PASS	Atlas-SNP
RBFA	79863	hgsc.bcm.edu	37	18	77805856	77805856	+	Missense_Mutation	SNP	A	A	C	rs3744872	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	57	110	0	0.5	0	A|0.688;C|0.312	0.312	strong	.	RBFA	27	.	NM_024805	exon7	c.A733C	p.N245H	GCGCTCAACAAGC	.	PASS	Atlas-SNP
OR52W1	120787	hgsc.bcm.edu	37	11	6220596	6220596	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	81	172	0	0.490909	0	.	.	none	.	OR52W1	33	.	NM_001005178	exon1	c.G143C	p.G48A	GCAATGGAGCACT	.	PASS	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	37	2	67630980	67630980	+	Missense_Mutation	SNP	G	G	A	rs3770657	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	165	78	160	0	0.472727	0	G|0.257;N|0.000	.	strong	ETAA1,NS,carcinoma,+1,2	ETAA1	88	2	NM_019002	exon5	c.G1166A	p.S389N	TAGGTAGTGAACC	.	PASS	Atlas-SNP
FAM35A	54537	hgsc.bcm.edu	37	10	88911841	88911841	+	Missense_Mutation	SNP	A	A	G	rs77879311	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	76	142	0	0.554745	0	A|0.850;G|0.150	0.150	strong	.	FAM35A	48	.	NM_019054	exon3	c.A730G	p.S244G	TTTCTCAGTATAA	.	PASS	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	37	X	8503641	8503641	+	Silent	SNP	G	G	A	rs809446	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	194	198	0	0.984772	0	G|0.471;0|0.003	.	strong	.	KAL1	78	.	NM_000216	exon12	c.C1833T	p.I611I	AGGCAGGATCTGG	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34924243	34924243	+	Silent	SNP	T	T	C	rs16990760	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	243	106	286	0	0.436214	0	T|0.786;C|0.214	0.214	strong	SON_ENST00000300278,NS,adenoma,0,2	SON	343	2	NM_032195	exon3	c.T2706C	p.D902D	CCAAGATTCTGCT	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1264183	1264183	+	Missense_Mutation	SNP	G	G	A	rs34739266	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	341	167	320	1	0.489736	0.003125	G|0.500;A|0.500	0.500	weak	.	MUC5B	473	.	NM_002458	exon31	c.G6073A	p.A2025T	CTTACCGCCACGG	.	PASS	Atlas-SNP
GTF3C6	112495	hgsc.bcm.edu	37	6	111288941	111288941	+	Missense_Mutation	SNP	T	T	C	rs41289884	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	103	209	0	0.483568	0	T|0.976;C|0.024	0.024	strong	.	GTF3C6	14	.	NM_138408	exon6	c.T590C	p.I197T	TTGATATACCTTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417222	105417222	+	Silent	SNP	C	C	T	rs2013274	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	102	279	1	0.980769	0.00358423	C|0.851;T|0.149	0.149	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G4566A	p.K1522K	CTCCACCTTCGGC	.	PASS	Atlas-SNP
FAM90A1	55138	hgsc.bcm.edu	37	12	8377346	8377346	+	Missense_Mutation	SNP	A	A	C	rs201155866		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	12	11	0	0.3	0	.	.	weak	FAM90A1,NS,neuroblastoma,0,2	FAM90A1	68	2	NM_018088	exon4	c.T83G	p.V28G	GGCCCAACTGGGG	.	scavenged	Atlas-SNP
ANG	283	hgsc.bcm.edu	37	14	21161931	21161931	+	Missense_Mutation	SNP	A	A	G	rs121909541	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	85	172	0	0.521472	0	A|0.999;G|0.001	0.001	strong	.	ANG	8	.	NM_001097577	exon2	c.A208G	p.I70V	ACATTTATTCATG	.	PASS	Atlas-SNP
KIR3DL2	3812	hgsc.bcm.edu	37	19	55378008	55378008	+	Missense_Mutation	SNP	C	C	T	rs3745902	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	41	87	0	0.43617	0	C|0.756;T|0.244	0.244	strong	.	KIR3DL2	55	.	NM_006737	exon9	c.C1190T	p.T397M	AGGTGACGTACGC	.	PASS	Atlas-SNP
PAX7	5081	hgsc.bcm.edu	37	1	19027239	19027239	+	Silent	SNP	A	A	G	rs2743201	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	83	164	0	0.453552	0	A|0.579;G|0.421	0.421	strong	PAX7_ENST00000420770,NS,carcinoma,0,3	PAX7	127	3	NM_002584	exon6	c.A879G	p.P293P	CTTCCCACCCACC	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152129115	152129115	+	Missense_Mutation	SNP	T	T	C	rs113327860	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	280	34	311	1	0.121429	0.00321543	T|0.940;C|0.060	0.060	strong	RPTN,NS,carcinoma,0,2	RPTN	123	2	NM_001122965	exon3	c.A460G	p.R154G	AATCTCTGTCTTG	.	scavenged	Atlas-SNP
MRC1	4360	hgsc.bcm.edu	37	10	17891705	17891705	+	Missense_Mutation	SNP	A	A	G	rs34039386		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	234	0	0	0.991525	.	.	.	weak	.	MRC1	13	.	NM_002438	exon7	c.A1186G	p.S396G	GAAGGCAGTGACC	.	PASS	Atlas-SNP
SRP72	6731	hgsc.bcm.edu	37	4	57361553	57361553	+	Silent	SNP	A	A	G	rs34419325	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	110	224	1	0.493274	0.00446429	A|0.915;G|0.085	0.085	strong	.	SRP72	59	.	NM_006947	exon17	c.A1671G	p.K557K	AAAGAAAAAGAAG	.	PASS	Atlas-SNP
RBAK	57786	hgsc.bcm.edu	37	7	5104359	5104359	+	Silent	SNP	G	G	A	rs12668616	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	30	52	0	0.47619	0	G|0.868;A|0.132	0.132	strong	RBAK_ENST00000396912,caecum,carcinoma,+1,1	RBAK	82	1	NM_001204456	exon6	c.G1272A	p.T424T	ACACACGGGAGAG	.	PASS	Atlas-SNP
FAM181B	220382	hgsc.bcm.edu	37	11	82444668	82444668	+	Missense_Mutation	SNP	C	C	G	rs144429777	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	21	21	0	0.777778	0	C|0.997;G|0.003	0.003	strong	.	FAM181B	14	.	NM_175885	exon1	c.G104C	p.G35A	CAGCAGCCCTTGT	.	PASS	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33359093	33359093	+	Silent	SNP	T	T	C	rs74655292	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	228	106	206	0	0.464912	0	T|0.992;C|0.008	0.008	strong	.	FMN1	174	.	NM_001103184	exon1	c.A993G	p.K331K	AGTTGCTTTCTTC	.	PASS	Atlas-SNP
C15orf41	84529	hgsc.bcm.edu	37	15	36946303	36946303	+	Missense_Mutation	SNP	C	C	G	rs3784678	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	67	158	0	0.478571	0	C|0.492;G|0.508	0.508	strong	.	C15orf41	24	.	NM_001130010	exon4	c.C217G	p.L73V	AGGTACCTGAATG	.	PASS	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	37	8	95158259	95158259	+	Silent	SNP	G	G	A	rs2251734	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	192	95	179	0	0.494792	0	G|0.692;A|0.308	0.308	strong	.	CDH17	119	.	NM_004063	exon15	c.C2064T	p.F688F	AGCCTCGAAAATG	.	PASS	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	37	18	14124427	14124427	+	Missense_Mutation	SNP	A	A	G	rs16941623	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	61	96	0	0.535088	0	A|0.988;G|0.012	0.012	strong	.	ZNF519	53	.	NM_145287	exon2	c.T52C	p.W18R	ATTTCCACTCTTC	.	PASS	Atlas-SNP
SLC27A2	11001	hgsc.bcm.edu	37	15	50474900	50474900	+	Silent	SNP	C	C	T	rs34490804	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	35	61	0	0.507246	0	C|0.905;T|0.095	0.095	strong	.	SLC27A2	50	.	NM_003645	exon1	c.C276T	p.A92A	AGTGGCCCGGGCG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412066	105412066	+	Missense_Mutation	SNP	C	C	T	rs77154428	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	96	189	0	0.989691	0	C|0.547;T|0.453	0.453	strong	AHNAK2_ENST00000333244,NS,carcinoma,-1,2	AHNAK2	719	2	NM_138420	exon7	c.G9722A	p.R3241H	CCCTTGCGATCTA	.	PASS	Atlas-SNP
USP17L20	100287441	hgsc.bcm.edu	37	4	9270328	9270328	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	753	15	537	8	0.0199203	0.0148976	.	.	none	RP11-1286E23.17,NS,carcinoma,0,1	.	.	1	NM_001256861	exon1	c.G984A	p.W328X	TGGGTGGAGTTGT	.	scavenged	Atlas-SNP
RNFT1	51136	hgsc.bcm.edu	37	17	58031412	58031412	+	Silent	SNP	A	A	G	rs11368	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	93	194	0	0.447115	0	A|0.499;G|0.501	0.501	strong	.	RNFT1	30	.	NM_016125	exon8	c.T1167C	p.I389I	CTGACAAATGAGA	.	PASS	Atlas-SNP
CRTC2	200186	hgsc.bcm.edu	37	1	153926078	153926078	+	Missense_Mutation	SNP	T	T	C	rs11264680	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	61	108	0	0.488	0	T|0.748;C|0.252	0.252	strong	.	CRTC2	58	.	NM_181715	exon5	c.A439G	p.M147V	AGGCCATCGTCCT	.	PASS	Atlas-SNP
ZNF230	7773	hgsc.bcm.edu	37	19	44515352	44515352	+	Silent	SNP	T	T	G	rs1060880	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	61	109	0	0.462121	0	T|0.801;G|0.199	0.199	strong	ZNF230,NS,carcinoma,0,1	ZNF230	44	1	NM_006300	exon5	c.T1161G	p.T387T	CCATACTGGAGAG	.	PASS	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	37	11	722709	722709	+	Silent	SNP	C	C	T	rs10902205	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	37	137	0	0.381443	0	A|0.000;C|0.882;G|0.000;T|0.118	0.118	strong	.	EPS8L2	42	.	NM_022772	exon14	c.C1245T	p.Y415Y	CCTCTACGTGCCC	.	PASS	Atlas-SNP
PIH1D2	120379	hgsc.bcm.edu	37	11	111941959	111941959	+	Missense_Mutation	SNP	G	G	A	rs1425917	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	81	211	0	0.419689	0	G|0.939;A|0.061	0.061	strong	.	PIH1D2	24	.	NM_001082619	exon4	c.C350T	p.A117V	TCTGCTGCATGAA	.	PASS	Atlas-SNP
TMEM51	55092	hgsc.bcm.edu	37	1	15541607	15541607	+	Silent	SNP	T	T	C	rs3820065	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	20	41	0	0.555556	0	T|0.843;C|0.157	0.157	strong	.	TMEM51	28	.	NM_018022	exon2	c.T24C	p.N8N	GGCCAATGGCTCG	.	PASS	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	37	2	115822349	115822349	+	Missense_Mutation	SNP	G	G	T	rs114821649	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	268	131	301	1	0.488806	0.00332226	G|0.996;T|0.004	0.004	strong	.	DPP10	415	.	NM_001178037	exon1	c.G15T	p.E5D	CACAGAGGTGGCT	.	PASS	Atlas-SNP
MARCH8	220972	hgsc.bcm.edu	37	10	45953767	45953767	+	Missense_Mutation	SNP	A	A	G	rs7908745	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	57	91	0	0.463415	0	A|0.697;G|0.303	0.303	strong	.	MARCH8	29	.	NM_001002266	exon7	c.T796C	p.Y266H	TTCCATATCCATG	.	PASS	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39594766	39594766	+	Missense_Mutation	SNP	C	C	T	rs138667284	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	86	139	0	0.488636	0	C|0.994;T|0.006	0.006	strong	.	KRT38	63	.	NM_006771	exon5	c.G997A	p.E333K	GGCGCTCCACCTC	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158592781	158592781	+	Silent	SNP	G	G	A	rs75931146	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	70	162	0	0.419162	0	G|0.961;A|0.039	0.039	strong	.	SPTA1	720	.	NM_003126	exon43	c.C6112T	p.L2038L	TCTGTAGAGGCAG	.	PASS	Atlas-SNP
KIAA0355	9710	hgsc.bcm.edu	37	19	34842488	34842488	+	Silent	SNP	T	T	C	rs392340	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	26	74	0	0.440678	0	T|0.473;C|0.527	0.527	strong	.	KIAA0355	105	.	NM_014686	exon13	c.T2895C	p.D965D	GGAGGATGTGAAC	.	PASS	Atlas-SNP
POU2F3	25833	hgsc.bcm.edu	37	11	120187971	120187971	+	Missense_Mutation	SNP	G	G	A	rs2282537	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	107	231	0	0.509524	0	G|0.893;A|0.107	0.107	strong	POU2F3,NS,carcinoma,0,2	POU2F3	44	2	NM_001244682	exon12	c.G1175A	p.R392K	ACAGCAGGCCTTC	.	PASS	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	37	13	42875683	42875683	+	Missense_Mutation	SNP	A	A	G	rs41288309	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	51	83	0	0.53125	0	A|0.993;G|0.007	0.007	strong	.	AKAP11	146	.	NM_016248	exon8	c.A2801G	p.N934S	GTAGCAATAAGGA	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123917020	123917020	+	Silent	SNP	T	T	A	rs3736855	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	27	50	0	0.409091	0	A|0.373;N|0.000	0.373	strong	.	CNTRL	161	.	NM_007018	exon25	c.T4194A	p.V1398V	AAATGTTGAGAGT	.	PASS	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	37	1	203743798	203743798	+	Missense_Mutation	SNP	C	C	T	rs41264261	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	57	118	0	0.6	0	C|0.979;T|0.021	0.021	strong	.	LAX1	48	.	NM_017773	exon5	c.C1186T	p.P396S	CTCCTTCCTGATG	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	37	8	2021421	2021421	+	Missense_Mutation	SNP	G	G	T	rs2272720	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	48	102	0	0.521739	0	G|0.687;T|0.313	0.313	strong	.	MYOM2	251	.	NM_003970	exon10	c.G961T	p.V321L	TCAGACGTGCTGT	.	PASS	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	37	22	37462936	37462936	+	Missense_Mutation	SNP	A	A	G	rs855791	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	102	140	0	0.582857	0	G|0.638;N|0.000	0.638	strong	TMPRSS6,NS,carcinoma,0,1	TMPRSS6	99	1	NM_153609	exon17	c.T2207C	p.V736A	CGATAGACCTCGC	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123716103	123716103	+	Silent	SNP	T	T	C	rs41258306	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	60	165	0	0.357143	0	T|0.939;C|0.061	0.061	strong	.	C5	124	.	NM_001735	exon40	c.A4806G	p.K1602K	TACCTTTTTAATG	.	PASS	Atlas-SNP
PPARGC1B	133522	hgsc.bcm.edu	37	5	149212614	149212614	+	Silent	SNP	G	G	T	rs115557257	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	89	175	0	0.536145	0	G|0.985;T|0.015	0.015	strong	.	PPARGC1B	74	.	NM_133263	exon5	c.G978T	p.R326R	ATCCCGGCCCTGG	.	PASS	Atlas-SNP
CLCN4	1183	hgsc.bcm.edu	37	X	10180554	10180554	+	Silent	SNP	G	G	A	rs34148950	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	188	145	0	0.994709	0	G|0.869;A|0.131	0.131	strong	.	CLCN4	84	.	NM_001830	exon10	c.G1437A	p.A479A	GATAGCGGGCAGG	.	PASS	Atlas-SNP
GPN2	54707	hgsc.bcm.edu	37	1	27210722	27210722	+	Silent	SNP	G	G	A	rs78109142	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	54	122	0	0.490909	0	G|0.986;A|0.014	0.014	strong	GPN2,NS,carcinoma,-1,1	GPN2	18	1	NM_018066	exon4	c.C789T	p.F263F	GGCTCTGAAACAG	.	PASS	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	37	10	91498127	91498127	+	Missense_Mutation	SNP	T	T	C	rs1886996	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	65	161	0	0.511811	0	T|0.224;C|0.776	0.776	strong	.	KIF20B	191	.	NM_016195	exon20	c.T3409C	p.C1137R	GTTGAATGTAGTC	.	PASS	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	37	8	30702739	30702739	+	Missense_Mutation	SNP	G	G	C	rs117362953	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	58	130	0	0.432836	0	G|0.997;C|0.003	0.003	strong	TEX15,NS,carcinoma,0,1	TEX15	350	1	NM_031271	exon1	c.C3795G	p.D1265E	AAGTACGTCAGTT	.	PASS	Atlas-SNP
IL19	29949	hgsc.bcm.edu	37	1	207015957	207015957	+	Missense_Mutation	SNP	T	T	C	rs2243191	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	90	124	0	1	0	C|0.638;N|0.000	0.638	strong	.	IL19	31	.	NM_153758	exon6	c.T638C	p.F213S	TAATGTTCTCAGC	.	PASS	Atlas-SNP
MICALL2	79778	hgsc.bcm.edu	37	7	1478525	1478525	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	18	45	0	0.5	0	.	.	none	.	MICALL2	63	.	NM_182924	exon10	c.G2073A	p.V691V	GCTCTGCACTCGG	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144874815	144874815	+	Missense_Mutation	SNP	T	T	C	rs1778155	bycluster;byfrequency;bysubmitter	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	230	51	229	0	0.221739	0	T|0.500;C|0.500	0.500	strong	.	PDE4DIP	817	.	NM_014644	exon30	c.A4793G	p.H1598R	AAGGCATGGCTGC	.	PASS	Atlas-SNP
SLC22A16	85413	hgsc.bcm.edu	37	6	110777962	110777962	+	Silent	SNP	A	A	G	rs6907567	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	115	246	0	0.454545	0	A|0.716;G|0.284	0.284	strong	.	SLC22A16	81	.	NM_033125	exon2	c.T312C	p.N104N	CCTCTTATTCCTG	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	37	6	168376881	168376881	+	Missense_Mutation	SNP	T	T	G	rs71305248	alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	52	253	0	0.268041	0	GTGTGGGGAGGAGG|0.500;TGGGGGAGGAGA|0.500	.	alt	.	.	.	.	NM_001129895	exon1	c.A452C	p.Q151P	CAGTGTTGGGGGA	.	PASS	Atlas-SNP
MSH4	4438	hgsc.bcm.edu	37	1	76378502	76378502	+	Missense_Mutation	SNP	G	G	A	rs5745549	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	49	97	0	0.563218	0	G|0.936;A|0.064	0.064	strong	.	MSH4	147	.	NM_002440	exon20	c.G2741A	p.S914N	ATTTAAGTAACCT	.	PASS	Atlas-SNP
LRRC2	79442	hgsc.bcm.edu	37	3	46580591	46580591	+	Missense_Mutation	SNP	G	G	T	rs17078944	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	90	174	0	0.491803	0	G|0.726;T|0.274	0.274	strong	.	LRRC2	37	.	NM_024512	exon4	c.C434A	p.A145E	CTCATCGCTTGAA	.	PASS	Atlas-SNP
DMRTA1	63951	hgsc.bcm.edu	37	9	22447655	22447655	+	Silent	SNP	T	T	A	rs558612	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	17	52	0	0.274194	0	T|0.705;A|0.295	0.295	strong	.	DMRTA1	29	.	NM_022160	exon1	c.T591A	p.G197G	ACTGGGTGCCTTG	.	PASS	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	37	4	5333091	5333091	+	Silent	SNP	G	G	A	rs16837029	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	28	70	0	0.538462	0	G|0.926;A|0.074	0.074	strong	.	STK32B	87	.	NM_018401	exon4	c.G405A	p.E135E	CCTGGAGTATCTT	.	PASS	Atlas-SNP
ZNF438	220929	hgsc.bcm.edu	37	10	31138817	31138817	+	Missense_Mutation	SNP	G	G	A	rs10160116	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	144	70	159	0	0.486111	0	G|0.641;A|0.359	0.359	strong	.	ZNF438	90	.	NM_182755	exon7	c.C517T	p.P173S	GACTGGGTTTGTA	.	PASS	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	37	11	4790410	4790410	+	Silent	SNP	A	A	G	rs1030724	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	87	130	2	0.568627	0.0153846	A|0.707;G|0.293	0.293	strong	OR51F1,right_upper_lobe,carcinoma,-2,1	OR51F1	60	1	NM_001004752	exon1	c.T738C	p.H246H	TCCCACATGGGAG	.	scavenged	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28422609	28422609	+	Silent	SNP	C	C	T	rs61756153	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	34	76	0	0.507463	0	C|0.932;T|0.068	0.068	strong	HERC2,NS,adenoma,-1,1	HERC2	501	1	NM_004667	exon60	c.G9210A	p.S3070S	GCCCCACGAAAAC	.	PASS	Atlas-SNP
NLRP13	126204	hgsc.bcm.edu	37	19	56410222	56410222	+	Silent	SNP	C	C	T	rs302827	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	46	81	0	0.494624	0	C|0.739;T|0.261	0.261	strong	.	NLRP13	220	.	NM_176810	exon10	c.G2871A	p.L957L	CAAATCCAAGATT	.	PASS	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	37	19	33600764	33600764	+	Missense_Mutation	SNP	T	T	C	rs2287679	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	37	84	0	0.45679	0	T|0.541;C|0.459	0.459	strong	.	GPATCH1	79	.	NM_018025	exon11	c.T1427C	p.L476P	CCCAGCTCTCCCC	.	PASS	Atlas-SNP
RTEL1	51750	hgsc.bcm.edu	37	20	62322290	62322290	+	Missense_Mutation	SNP	G	G	A	rs190887884	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	20	37	0	0.540541	0	G|0.994;A|0.006	0.006	strong	.	RTEL1	114	.	NM_032957	exon27	c.G2618A	p.G873D	GCCCTGGCGAGGA	.	PASS	Atlas-SNP
TRPV6	55503	hgsc.bcm.edu	37	7	142574544	142574544	+	Silent	SNP	G	G	A	rs138110961	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	86	152	0	0.51497	0	G|0.999;A|0.001	0.001	strong	.	TRPV6	108	.	NM_018646	exon5	c.C534T	p.I178I	CCGCACGATCTCC	.	PASS	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	37	12	56494991	56494991	+	Silent	SNP	G	G	A	rs2271189	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	36	87	0	0.378947	0	G|0.703;A|0.297	0.297	strong	.	ERBB3	350	.	NM_001982	exon27	c.G3348A	p.R1116R	GTGTAGGAGCCGG	.	PASS	Atlas-SNP
P2RX7	5027	hgsc.bcm.edu	37	12	121622304	121622304	+	Missense_Mutation	SNP	A	A	C	rs3751143	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	55	0	1	0	A|0.826;C|0.174	0.174	strong	.	P2RX7	53	.	NM_002562	exon13	c.A1487C	p.E496A	TGGAGGAGCTGTG	.	PASS	Atlas-SNP
TEX10	54881	hgsc.bcm.edu	37	9	103064530	103064530	+	Silent	SNP	G	G	A	rs7472	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	46	104	0	0.433962	0	G|0.502;A|0.498	0.498	strong	.	TEX10	99	.	NM_017746	exon15	c.C2733T	p.F911F	CACGTTGAAGCAG	.	PASS	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140993264	140993264	+	Missense_Mutation	SNP	G	G	A	rs176036	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	43	50	0	1	0	G|0.829;A|0.171	0.171	strong	.	MAGEC1	317	.	NM_005462	exon4	c.G74A	p.C25Y	AGAGTTGTCCTGA	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72992221	72992221	+	Silent	SNP	G	G	A	rs61735550	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	95	206	0	0.452381	0	G|0.830;A|0.170	0.170	strong	.	ZFHX3	404	.	NM_006885	exon2	c.C1824T	p.S608S	CTCTGTGCTTTCA	.	PASS	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	37	17	80710097	80710097	+	Missense_Mutation	SNP	G	G	T	rs11550062	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	16	11	6	0	0.6875	0	G|0.918;T|0.082	0.082	strong	TBCD_ENST00000355528,rectum,carcinoma,-2,1	TBCD	94	1	NM_005993	exon1	c.G28T	p.G10C	GCCGCGGGCGGCC	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47850484	47850484	+	Missense_Mutation	SNP	G	G	C	rs2070426	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	146	135	0	1	0	G|0.520;C|0.480	0.480	strong	.	PCNT	283	.	NM_006031	exon37	c.G7977C	p.Q2659H	TGAGCAGGGGAAG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1268955	1268955	+	Silent	SNP	C	C	T	rs2943523		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	732	354	441	2	0.483607	0.00453515	.	.	weak	MUC5AC,colon,carcinoma,+1,1	MUC5B	473	1	NM_002458	exon31	c.C10845T	p.L3615L	GGGCCTCGAGTGC	.	scavenged	Atlas-SNP
SECTM1	6398	hgsc.bcm.edu	37	17	80280865	80280865	+	Silent	SNP	G	G	A	rs11077986	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	69	98	0	0.496403	0	G|0.614;A|0.386	0.386	strong	.	SECTM1	14	.	NM_003004	exon4	c.C426T	p.P142P	AGTGTCGGGGGCG	.	PASS	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	37	11	133805585	133805585	+	Silent	SNP	C	C	T	rs329637	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	46	70	0	0.505495	0	C|0.682;T|0.318	0.318	strong	IGSF9B_ENST00000321016,NS,carcinoma,0,1	IGSF9B	290	1	NM_014987	exon7	c.G894A	p.S298S	CTTCCCCGAGTCC	.	PASS	Atlas-SNP
B3GNT3	10331	hgsc.bcm.edu	37	19	17919024	17919024	+	Silent	SNP	A	A	T	rs2240813	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	20	66	0	0.37037	0	A|0.903;T|0.097	0.097	strong	.	B3GNT3	40	.	NM_014256	exon2	c.A408T	p.V136V	CAAGGTACGGGGT	.	PASS	Atlas-SNP
B4GALT7	11285	hgsc.bcm.edu	37	5	177031348	177031348	+	Silent	SNP	T	T	C	rs11537644	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	126	0	1	0	T|0.352;C|0.648	0.648	strong	.	B4GALT7	21	.	NM_007255	exon2	c.T219C	p.R73R	TCCCCGTGCCTGC	.	PASS	Atlas-SNP
FAM71F2	346653	hgsc.bcm.edu	37	7	128315882	128315882	+	Missense_Mutation	SNP	C	C	A	rs17169357	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	26	36	0	0.509804	0	C|0.664;A|0.335	0.335	strong	.	FAM71F2	19	.	NM_001012454	exon2	c.C334A	p.P112T	AGCACACCTGGTG	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23911820	23911820	+	Silent	SNP	A	A	G	rs4143768	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	22	57	0	0.488889	0	A|0.760;G|0.240	0.240	strong	.	SACS	871	.	NM_014363	exon10	c.T6195C	p.I2065I	TTCTTGAATATTT	.	PASS	Atlas-SNP
RELL2	285613	hgsc.bcm.edu	37	5	141019569	141019569	+	Missense_Mutation	SNP	G	G	C	rs17855844	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	69	141	0	0.475862	0	G|0.822;C|0.178	0.178	strong	.	RELL2	24	.	NM_173828	exon5	c.G586C	p.G196R	GGCTCTGGTGGGG	.	PASS	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	37	2	173352103	173352103	+	Silent	SNP	C	C	T	rs2293649	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	92	132	0	0.593548	0	C|0.729;T|0.271	0.271	strong	.	ITGA6	171	.	NM_001079818	exon15	c.C2082T	p.D694D	CGATGACGCCCAT	.	PASS	Atlas-SNP
SLC22A5	6584	hgsc.bcm.edu	37	5	131721174	131721174	+	Silent	SNP	A	A	G	rs274558	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	151	67	140	0	0.443709	0	A|0.579;G|0.421	0.421	strong	.	SLC22A5	34	.	NM_003060	exon4	c.A807G	p.L269L	GGTGCTATGCGTG	.	PASS	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	37	2	148657117	148657117	+	Silent	SNP	G	G	A	rs1128919	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	30	52	0	0.652174	0	G|0.657;A|0.343	0.343	strong	.	ACVR2A	125	.	NM_001616	exon3	c.G354A	p.P118P	TTTTCCGGAGATG	.	PASS	Atlas-SNP
FUOM	282969	hgsc.bcm.edu	37	10	135168903	135168903	+	Missense_Mutation	SNP	C	C	G	rs201940330	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	19	47	0	0.5	0	C|1.000;T|0.000	.	strong	.	.	.	.	NM_001098483	exon6	c.G436C	p.G146R	GCACCCCCTTCCT	.	PASS	Atlas-SNP
NDNF	79625	hgsc.bcm.edu	37	4	121957559	121957559	+	Silent	SNP	G	G	A	rs34766411	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	358	168	366	1	0.469274	0.00273224	G|0.789;A|0.211	0.211	strong	.	NDNF	72	.	NM_024574	exon4	c.C1567T	p.L523L	TCTGCAGGTTTTG	.	PASS	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	37	1	180000542	180000542	+	Missense_Mutation	SNP	G	G	T	rs12125245	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	129	263	0	0.492366	0	G|0.929;T|0.071	0.071	strong	.	CEP350	418	.	NM_014810	exon15	c.G3638T	p.G1213V	AATCTGGGACCAG	.	PASS	Atlas-SNP
OR2H1	26716	hgsc.bcm.edu	37	6	29429733	29429733	+	Missense_Mutation	SNP	G	G	A	rs61732185	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	253	120	230	1	0.474308	0.00434783	G|0.964;A|0.036	0.036	strong	.	OR2H1	38	.	NM_030883	exon3	c.G187A	p.D63N	CTCTCTGACCTCT	.	PASS	Atlas-SNP
PGM2L1	283209	hgsc.bcm.edu	37	11	74049569	74049569	+	Silent	SNP	A	A	G	rs3867270	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	126	130	0	1	0	A|0.474;G|0.526	0.526	strong	.	PGM2L1	59	.	NM_173582	exon13	c.T1710C	p.S570S	TGTTCCACTTGTC	.	PASS	Atlas-SNP
FHL5	9457	hgsc.bcm.edu	37	6	97063555	97063555	+	Silent	SNP	A	A	G	rs9398148	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	122	52	110	0	0.42623	0	A|0.613;G|0.387	0.387	strong	FHL5,caecum,carcinoma,+2,1	FHL5	73	1	NM_020482	exon7	c.A762G	p.K254K	CGGGAAATGCTCT	.	PASS	Atlas-SNP
UGT2B4	7363	hgsc.bcm.edu	37	4	70346564	70346564	+	Silent	SNP	G	G	T	rs67904882	bycluster;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	70	163	0	0.472973	0	TT|1.000;|0.000	.	alt	UGT2B4,NS,carcinoma,0,1	UGT2B4	105	1	NM_021139	exon6	c.C1375A	p.R459R	CTGCTCGATCAAG	.	PASS	Atlas-SNP
FAM135A	57579	hgsc.bcm.edu	37	6	71238105	71238105	+	Missense_Mutation	SNP	A	A	G	rs2747701	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	72	141	0	0.464516	0	A|0.647;G|0.353	0.353	strong	.	FAM135A	181	.	NM_001162529	exon14	c.A3725G	p.D1242G	AAGAGGATGGTTC	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	37	19	10084292	10084292	+	Missense_Mutation	SNP	C	C	G	rs2287813	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	28	47	0	0.518519	0	C|0.507;G|0.493	0.493	strong	COL5A3,NS,carcinoma,-1,1	COL5A3	243	1	NM_015719	exon50	c.G3620C	p.R1207P	TCCCCTCGCTCAC	.	PASS	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	37	9	111663754	111663754	+	Silent	SNP	G	G	A	rs2230791	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	40	103	0	0.40404	0	G|0.775;T|0.018	.	strong	.	IKBKAP	122	.	NM_003640	exon18	c.C1965T	p.T655T	GGAATGGGTTGTC	.	PASS	Atlas-SNP
TKT	7086	hgsc.bcm.edu	37	3	53259850	53259850	+	Silent	SNP	C	C	T	rs3163	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	68	148	0	0.465753	0	C|0.860;T|0.140	0.140	strong	.	TKT	38	.	NM_001258028	exon15	c.G1818A	p.P606P	CTCAGCCGGCTTC	.	PASS	Atlas-SNP
ACTL9	284382	hgsc.bcm.edu	37	19	8808373	8808373	+	Missense_Mutation	SNP	G	G	T	rs4804079	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	8	18	0	0.380952	0	G|0.442;T|0.558	0.558	strong	.	ACTL9	74	.	NM_178525	exon1	c.C679A	p.H227N	TCAGGTGGTTGCC	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179579093	179579093	+	Missense_Mutation	SNP	T	T	C	rs12693164	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	194	101	165	1	0.520619	0.00606061	T|0.765;C|0.235	0.235	strong	TTN_ENST00000342992,colon,carcinoma,0,1	TTN	18412	1	NM_001267550	exon91	c.A26408G	p.N8803S	CCAGCATTGGCTG	.	scavenged	Atlas-SNP
FUT2	2524	hgsc.bcm.edu	37	19	49206417	49206417	+	Silent	SNP	A	A	G	rs492602	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	14	32	0	0.341463	0	A|0.570;G|0.430	0.430	strong	.	FUT2	30	.	NM_001097638	exon2	c.A204G	p.A68A	CAATGCAATAGGC	.	PASS	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	210857457	210857457	+	Silent	SNP	A	A	G	rs1135317	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	51	43	0	1	0	A|0.277;G|0.723	0.723	strong	KCNH1,NS,carcinoma,-1,1	KCNH1	199	1	NM_172362	exon11	c.T2136C	p.D712D	TTTCACATCGCTG	.	PASS	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101606889	101606889	+	Missense_Mutation	SNP	G	G	A	rs2959197	bycluster;by2hit2allele;byhapmap;alternate_allele	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	64	175	0	0.477612	0	.	.	alt	.	LRRK1	310	.	NM_024652	exon33	c.G5813A	p.G1938D	ATTCTGGCGCCCA	.	PASS	Atlas-SNP
PRELID2	153768	hgsc.bcm.edu	37	5	145199531	145199531	+	Missense_Mutation	SNP	C	C	T	rs142301961	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	95	216	0	0.5	0	C|0.999;T|0.001	0.001	strong	.	PRELID2	16	.	NM_182960	exon3	c.G184A	p.V62M	GAACCACGTTCTG	.	PASS	Atlas-SNP
CISD3	284106	hgsc.bcm.edu	37	17	36889559	36889559	+	Missense_Mutation	SNP	C	C	T	rs2879097	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	42	72	0	0.488372	0	C|0.849;T|0.151	0.151	strong	.	CISD3	12	.	NM_001136498	exon4	c.C235T	p.R79C	TTCCAACGCACTG	.	PASS	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57758727	57758727	+	Missense_Mutation	SNP	T	T	C	rs115241876	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	30	49	0	0.508475	0	T|0.997;C|0.003	0.003	strong	.	CCDC135	97	.	NM_032269	exon12	c.T1738C	p.S580P	GCAGAGTCAAACC	.	PASS	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	37	17	9792768	9792768	+	Missense_Mutation	SNP	G	G	A	rs17681684	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	43	74	0	0.452632	0	G|0.822;A|0.178	0.178	strong	.	GLP2R	90	.	NM_004246	exon13	c.G1408A	p.D470N	GGGAAGGACTTCC	.	PASS	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	37	9	107456892	107456892	+	Missense_Mutation	SNP	C	C	G	rs61741597	byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	181	87	197	0	0.480663	0	C|0.957;G|0.043	0.043	strong	.	OR13D1	42	.	NM_001004484	exon1	c.C190G	p.L64V	CTCTGCCTCATCA	.	PASS	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	37	20	6064731	6064731	+	Silent	SNP	C	C	T	rs2232079	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	29	55	0	0.453125	0	C|0.861;T|0.139	0.139	strong	FERMT1,NS,carcinoma,0,2	FERMT1	106	2	NM_017671	exon13	c.G1674A	p.A558A	CTGCCACGCCTGG	.	PASS	Atlas-SNP
SRMS	6725	hgsc.bcm.edu	37	20	62172244	62172244	+	Missense_Mutation	SNP	C	C	G	rs33933649	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	32	53	0	0.533333	0	C|0.979;G|0.021	0.021	strong	.	SRMS	48	.	NM_080823	exon8	c.G1394C	p.S465T	GGGCTGCTCCTCC	.	PASS	Atlas-SNP
RINL	126432	hgsc.bcm.edu	37	19	39360597	39360597	+	Missense_Mutation	SNP	C	C	T	rs113728915	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	36	73	0	0.5625	0	C|0.924;T|0.076	0.076	strong	RINL,NS,carcinoma,0,1	RINL	32	1	NM_001195833	exon9	c.G1328A	p.R443Q	TCGCCTCGAGCCA	.	PASS	Atlas-SNP
TAPBPL	55080	hgsc.bcm.edu	37	12	6567907	6567907	+	Missense_Mutation	SNP	C	C	T	rs1045546	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	71	87	0	0.550388	0	C|0.876;T|0.124	0.124	strong	.	TAPBPL	21	.	NM_018009	exon5	c.C1001T	p.T334M	TGGTGACGTGGAC	.	PASS	Atlas-SNP
C9orf24	84688	hgsc.bcm.edu	37	9	34397545	34397545	+	Silent	SNP	A	A	G	rs11790577	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	59	123	0	0.541284	0	A|0.552;G|0.448	0.448	strong	.	C9orf24	15	.	NM_032596	exon1	c.T87C	p.Y29Y	GTCCTTATAGACC	.	PASS	Atlas-SNP
ADAMTS13	11093	hgsc.bcm.edu	37	9	136324239	136324239	+	Silent	SNP	C	C	A	rs1055432	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	48	99	0	0.440367	0	C|0.769;A|0.231	0.231	strong	.	ADAMTS13	113	.	NM_139025	exon29	c.C4221A	p.T1407T	CTGGACCCTCCAA	.	PASS	Atlas-SNP
SLC4A5	57835	hgsc.bcm.edu	37	2	74466594	74466594	+	Silent	SNP	G	G	A	rs4853018	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	62	102	0	0.466165	0	G|0.694;A|0.306	0.306	strong	SLC4A5_ENST00000377634,colon,carcinoma,0,2	SLC4A5	215	2	NM_021196	exon16	c.C2187T	p.G729G	GCGCCCGCCGTAG	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47754471	47754471	+	Missense_Mutation	SNP	G	G	A	rs58106867	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	42	189	0	0.176471	0	G|0.991;A|0.010	0.010	strong	PCNT,caecum,adenoma,0,1	PCNT	283	1	NM_006031	exon3	c.G428A	p.R143H	AACAGCGTGGGAT	.	PASS	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	37	1	220156729	220156729	+	Silent	SNP	C	C	T	rs5030754	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	68	148	0	0.507463	0	C|0.883;T|0.117	0.117	strong	.	EPRS	140	.	NM_004446	exon22	c.G3102A	p.K1034K	TTCTGACTTTGTG	.	PASS	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	37	17	73916423	73916423	+	Missense_Mutation	SNP	A	A	T	rs7213548	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	72	135	0	0.489796	0	A|0.875;T|0.125	0.125	strong	.	FBF1	48	.	NM_001080542	exon17	c.T1717A	p.C573S	GGCTGCACTGAAG	.	PASS	Atlas-SNP
CYB5RL	606495	hgsc.bcm.edu	37	1	54644859	54644859	+	Missense_Mutation	SNP	C	C	T	rs61738851	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	29	52	0	0.517857	0	C|0.933;T|0.067	0.067	strong	.	CYB5RL	17	.	NM_001031672	exon7	c.G707A	p.R236H	CAGAAACGGGCCT	.	PASS	Atlas-SNP
ZNF92	168374	hgsc.bcm.edu	37	7	64863392	64863392	+	Missense_Mutation	SNP	C	C	T	rs10265083	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	54	162	0	0.415385	0	C|0.725;T|0.275	0.275	strong	.	ZNF92	68	.	NM_152626	exon4	c.C365T	p.A122V	TGGATGCATGTAA	.	PASS	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	37	19	38652963	38652963	+	Silent	SNP	G	G	A	rs62121443	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	233	109	210	0	0.467811	0	G|0.996;A|0.004	0.004	strong	.	SIPA1L3	150	.	NM_015073	exon14	c.G3732A	p.P1244P	GCACCCGTCCAGG	.	PASS	Atlas-SNP
PRX	57716	hgsc.bcm.edu	37	19	40901604	40901604	+	Silent	SNP	A	A	G	rs268672	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	33	93	0	0.4125	0	A|0.457;G|0.543	0.543	strong	.	PRX	151	.	NM_181882	exon7	c.T2655C	p.P885P	CACCTCAGGGCCC	.	PASS	Atlas-SNP
CIB2	10518	hgsc.bcm.edu	37	15	78398146	78398146	+	Silent	SNP	G	G	A	rs10456	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	38	104	0	0.447059	0	G|0.836;A|0.164	0.164	strong	.	CIB2	24	.	NM_006383	exon5	c.C477T	p.D159D	GTCACCGTCCAAG	.	PASS	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	37	14	76368544	76368544	+	Missense_Mutation	SNP	T	T	C	rs1133834	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	31	86	0	0.364706	0	C|0.345;N|0.000	0.345	strong	.	TTLL5	102	.	NM_015072	exon31	c.T3800C	p.F1267S	CAGCCTTTGTGCC	.	PASS	Atlas-SNP
NUAK1	9891	hgsc.bcm.edu	37	12	106460938	106460938	+	Missense_Mutation	SNP	G	G	C	rs3741883	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	53	124	0	0.509615	0	G|0.796;C|0.204	0.204	strong	NUAK1_ENST00000261402,NS,carcinoma,0,2	NUAK1	196	2	NM_014840	exon7	c.C1628G	p.P543R	ATTTCAGGGCTGA	.	PASS	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	37	5	65350481	65350481	+	Missense_Mutation	SNP	C	C	T	rs3805466	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	35	76	0	0.406977	0	C|0.936;T|0.064	0.064	strong	.	ERBB2IP	120	.	NM_001253699	exon21	c.C3335T	p.S1112L	TCCACTCAGCGGG	.	PASS	Atlas-SNP
AZI1	22994	hgsc.bcm.edu	37	17	79164488	79164488	+	Missense_Mutation	SNP	C	C	T	rs117616373	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	16	25	0	0.592593	0	C|0.979;T|0.021	0.021	strong	.	AZI1	145	.	NM_014984	exon24	c.G3058A	p.A1020T	GCGTGGCCAGCTC	.	PASS	Atlas-SNP
C8A	731	hgsc.bcm.edu	37	1	57383358	57383358	+	Missense_Mutation	SNP	C	C	T	rs17300936	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	286	135	247	1	0.472028	0.00404858	C|0.917;N|0.000	.	strong	.	C8A	103	.	NM_000562	exon11	c.C1724T	p.P575L	CGTGTCCAGGGCG	.	PASS	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	37	12	72008421	72008421	+	Missense_Mutation	SNP	T	T	C	rs11541286	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	25	58	0	0.490196	0	T|0.956;C|0.044	0.044	strong	.	ZFC3H1	172	.	NM_144982	exon30	c.A5420G	p.K1807R	AAAAATTTGAATT	.	PASS	Atlas-SNP
RNF8	9025	hgsc.bcm.edu	37	6	37349066	37349066	+	Silent	SNP	G	G	A	rs34150698	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	50	116	1	0.49505	0.00862069	G|0.947;A|0.053	0.053	strong	RNF8,colon,carcinoma,+1,1	RNF8	78	1	NM_003958	exon7	c.G1377A	p.K459K	TAATAAGATGGTA	.	scavenged	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39253835	39253835	+	Missense_Mutation	SNP	C	C	T	rs72625995	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	65	169	0	0.401235	0	C|0.980;T|0.020	0.020	strong	KRTAP4-8,NS,carcinoma,0,1	KRTAP4-8	57	1	NM_031960	exon1	c.G502A	p.A168T	CACAGGCTGGGCG	.	PASS	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	37	20	40079655	40079655	+	Missense_Mutation	SNP	G	G	C	rs41278126	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	105	181	0	0.488372	0	G|0.971;C|0.029	0.029	strong	.	CHD6	312	.	NM_032221	exon23	c.C3614G	p.A1205G	CAGGTGGCTAGCC	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537324	88537324	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	11	236	0	0.0601093	0	.	.	none	DSPP,NS,carcinoma,0,2	DSPP	174	2	NM_014208	exon5	c.C3510T	p.D1170D	CAGCGACAGCAGC	.	PASS	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	37	2	62053677	62053677	+	Silent	SNP	A	A	G	rs138464813	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	95	224	0	0.44186	0	A|0.998;G|0.002	0.002	strong	.	FAM161A	200	.	NM_001201543	exon7	c.T2064C	p.I688I	GGTATCAATAAAA	.	PASS	Atlas-SNP
PEX26	55670	hgsc.bcm.edu	37	22	18561342	18561342	+	Missense_Mutation	SNP	A	A	G	rs201884779	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	11	31	0	0.423077	0	A|0.994;G|0.006	0.006	weak	.	PEX26	27	.	NM_001127649	exon1	c.A200G	p.N67S	TGGCCAACCACGC	.	PASS	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	37	1	167792356	167792356	+	Missense_Mutation	SNP	G	G	A	rs72697797	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	67	0	0.526316	0	G|0.973;A|0.027	0.027	strong	.	ADCY10	175	.	NM_018417	exon29	c.C4058T	p.P1353L	AATTGCGGGTATC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281690	152281690	+	Missense_Mutation	SNP	C	C	T	rs12407748	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	370	168	332	0	0.454054	0	C|0.851;T|0.149	0.149	strong	.	FLG	900	.	NM_002016	exon3	c.G5672A	p.R1891Q	TCGGCCCGAGAGG	.	PASS	Atlas-SNP
RGL1	23179	hgsc.bcm.edu	37	1	183876182	183876182	+	Silent	SNP	C	C	T	rs11591089	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	51	72	0	0.566667	0	C|0.745;T|0.255	0.255	strong	RGL1,NS,carcinoma,0,1	RGL1	91	1	NM_015149	exon15	c.C1614T	p.D538D	TGCTGACGCCAGC	.	PASS	Atlas-SNP
CDC25A	993	hgsc.bcm.edu	37	3	48228212	48228212	+	Silent	SNP	G	G	A	rs3731494	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	51	119	0	0.504951	0	G|0.989;A|0.011	0.011	strong	.	CDC25A	40	.	NM_001789	exon2	c.C228T	p.S76S	CTCGGAGGAGCCC	.	PASS	Atlas-SNP
FAM21A	387680	hgsc.bcm.edu	37	10	51853633	51853633	+	Missense_Mutation	SNP	C	C	T	rs199520696	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	979	212	750	1	0.216548	0.00133333	C|0.796;T|0.205	0.205	strong	FAM21A,NS,carcinoma,0,4	FAM21A	32	4	NM_001005751	exon13	c.C1136T	p.T379M	TCTTCACGGAAGC	.	scavenged	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44117119	44117119	+	Missense_Mutation	SNP	A	A	G	rs34043286	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	145	124	0	1	0	A|0.853;G|0.147	0.147	strong	.	.	.	.	NM_001193466	exon8	c.T2152C	p.S718P	GAGCTGAATCTGG	.	PASS	Atlas-SNP
TUBG2	27175	hgsc.bcm.edu	37	17	40811919	40811919	+	Silent	SNP	A	A	G	rs525911	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	77	257	0	0.323529	0	A|0.485;G|0.515	0.515	strong	.	TUBG2	43	.	NM_016437	exon2	c.A117G	p.E39E	GGAGGAATTCGCC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105414252	105414252	+	Silent	SNP	C	C	T	rs60106058	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	225	224	214	0	0.995556	0	C|0.601;T|0.399	0.399	strong	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.G7536A	p.K2512K	CTCCACCTTCGGC	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371075	240371075	+	Missense_Mutation	SNP	C	C	T	rs71646825	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	18	91	0	0.132353	0	C|0.820;T|0.180	0.180	strong	.	FMN2	451	.	NM_020066	exon5	c.C2963T	p.P988L	TACCCCCTCCTCC	.	PASS	Atlas-SNP
SFRP2	6423	hgsc.bcm.edu	37	4	154709922	154709922	+	Silent	SNP	C	C	T	rs4075422	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	40	23	39	0	0.575	0	C|0.953;T|0.047	0.047	strong	.	SFRP2	45	.	NM_003013	exon1	c.G66A	p.A22A	CCCGCGCGCCGAG	.	PASS	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	37	7	105658451	105658451	+	Missense_Mutation	SNP	G	G	A	rs6967330	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	57	60	0	1	0	G|0.826;A|0.174	0.174	strong	.	CDHR3	153	.	NM_152750	exon12	c.G1586A	p.C529Y	TGGACTGTGAAAC	.	PASS	Atlas-SNP
NUDT19	390916	hgsc.bcm.edu	37	19	33200275	33200275	+	Missense_Mutation	SNP	A	A	T	rs371226805		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	55	96	0	0.514019	0	.	.	weak	.	NUDT19	15	.	NM_001105570	exon2	c.A899T	p.D300V	CTGCTGATGGGAT	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187540635	187540635	+	Missense_Mutation	SNP	T	T	G	rs77834784	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	58	149	0	0.381579	0	T|0.926;G|0.074	0.074	strong	FAT1,colon,carcinoma,0,2	FAT1	500	2	NM_005245	exon10	c.A7105C	p.T2369P	TCAGCGTGGGCAT	.	PASS	Atlas-SNP
UBQLNL	143630	hgsc.bcm.edu	37	11	5536852	5536852	+	Missense_Mutation	SNP	A	A	G	rs2017434	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	68	174	0	0.4	0	A|0.689;G|0.311	0.311	strong	UBQLNL,colon,carcinoma,0,1	UBQLNL	74	1	NM_145053	exon1	c.T820C	p.Y274H	CAGCATAGTTCTG	.	PASS	Atlas-SNP
SPDYE5	442590	hgsc.bcm.edu	37	7	75130916	75130916	+	Missense_Mutation	SNP	C	C	A	rs200010058	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	117	240	0	0.477551	0	C|0.895;A|0.105	0.105	strong	.	.	.	.	NM_001099435	exon6	c.C791A	p.S264Y	ACCGCTCTCGCAT	.	PASS	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	37	8	124658210	124658210	+	Silent	SNP	C	C	T	rs16898671	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	84	155	0	0.525	0	C|0.859;T|0.141	0.141	strong	KLHL38,NS,carcinoma,-1,2	KLHL38	81	2	NM_001081675	exon3	c.G1515A	p.A505A	CATGTCCGCACAT	.	PASS	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	37	3	167023493	167023493	+	Missense_Mutation	SNP	C	C	T	rs35864545	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	245	105	276	1	0.428571	0.00362319	C|0.915;T|0.085	0.085	strong	.	ZBBX	299	.	NM_024687	exon17	c.G1663A	p.E555K	TCAATTCCAAGGA	.	PASS	Atlas-SNP
RNASET2	8635	hgsc.bcm.edu	37	6	167344583	167344583	+	Silent	SNP	A	A	G	rs13213697	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	47	112	0	0.494737	0	A|0.780;G|0.220	0.220	strong	.	RNASET2	18	.	NM_003730	exon8	c.T516C	p.L172L	TCTGGCAAGGGCA	.	PASS	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	37	8	123966159	123966159	+	Silent	SNP	G	G	C	rs3802265	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	50	114	0	0.390625	0	G|0.561;C|0.439	0.439	strong	.	ZHX2	106	.	NM_014943	exon3	c.G2409C	p.A803A	GGATGCGATCTCA	.	PASS	Atlas-SNP
SLC52A3	113278	hgsc.bcm.edu	37	20	744450	744450	+	Silent	SNP	G	G	A	rs3746805	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	34	73	0	0.472222	0	G|0.667;A|0.333	0.333	strong	.	.	.	.	NM_033409	exon3	c.C765T	p.L255L	ATTGAGGAGGTCT	.	PASS	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	37	1	154115962	154115962	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	199	105	197	0	0.527638	0	.	.	none	.	NUP210L	181	.	NM_001159484	exon3	c.T432C	p.D144D	TGGCGAATCATCT	.	PASS	Atlas-SNP
EXD3	54932	hgsc.bcm.edu	37	9	140250749	140250749	+	Missense_Mutation	SNP	C	C	T	rs180687197	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	25	27	0	0.555556	0	C|0.999;T|0.001	0.001	strong	.	EXD3	86	.	NM_017820	exon8	c.G728A	p.R243H	TGCAGACGCAAGA	.	PASS	Atlas-SNP
ADCK2	90956	hgsc.bcm.edu	37	7	140394587	140394587	+	Missense_Mutation	SNP	C	C	T	rs1046515	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	29	67	0	0.467742	0	C|0.890;T|0.110	0.110	strong	.	ADCK2	37	.	NM_052853	exon8	c.C1865T	p.P622L	CGGGCCCAGTGTG	.	PASS	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	37	4	100496105	100496105	+	Silent	SNP	C	C	G	rs7667001	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	430	218	472	1	0.506977	0.00211864	C|0.931;G|0.069	0.069	strong	.	MTTP	127	.	NM_000253	exon2	c.C39G	p.S13S	CATTTCCTCATAT	.	PASS	Atlas-SNP
NUF2	83540	hgsc.bcm.edu	37	1	163313539	163313539	+	Missense_Mutation	SNP	C	C	T	rs11802875	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	54	132	0	0.446281	0	C|0.865;N|0.000	.	strong	NUF2_ENST00000271452,NS,carcinoma,0,2	NUF2	138	2	NM_145697	exon10	c.C686T	p.S229L	AATTGTCGGTGGT	.	PASS	Atlas-SNP
C10orf35	219738	hgsc.bcm.edu	37	10	71391538	71391538	+	Silent	SNP	T	T	C	rs1381932	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	83	34	105	0	0.409639	0	T|0.773;C|0.227	0.227	strong	.	C10orf35	22	.	NM_145306	exon3	c.T39C	p.D13D	GCAGGATGACGAC	.	PASS	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140993737	140993737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	230	13	266	0	0.0565217	0	.	.	none	.	MAGEC1	317	.	NM_005462	exon4	c.C547T	p.P183S	AGTTCCCCTGAGA	.	PASS	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6896483	6896483	+	Missense_Mutation	SNP	G	G	A	rs330877	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	92	188	0	0.525714	0	G|0.675;A|0.325	0.325	strong	EMR1,NS,carcinoma,-1,1	EMR1	153	1	NM_001256252	exon3	c.G169A	p.A57T	TATTGCGCTTGCA	.	PASS	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	37	6	31324911	31324911	+	Missense_Mutation	SNP	C	C	G	rs1050462	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	15	15	133	0	1	0	C|0.792;G|0.208	0.208	strong	HLA-B,cerebellum,glioma,0,1	HLA-B	54	1	NM_005514	exon1	c.G25C	p.V9L	GGAGGACGGTTCG	.	scavenged	Atlas-SNP
CTU2	348180	hgsc.bcm.edu	37	16	88781040	88781040	+	Missense_Mutation	SNP	A	A	G	rs8059048	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	85	126	0	0.57047	0	A|0.751;G|0.249	0.249	strong	CTU2_ENST00000453996,NS,carcinoma,0,4	CTU2	66	4	NM_001012759	exon12	c.A1247G	p.Q416R	TCTCCCAGATGCA	.	PASS	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	37	7	7545691	7545691	+	Missense_Mutation	SNP	G	G	C	rs10486176	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	74	137	0	0.5	0	G|0.869;C|0.131	0.131	strong	.	COL28A1	113	.	NM_001037763	exon11	c.C980G	p.T327S	GGTCCAGTAATTC	.	PASS	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	37	4	115749005	115749005	+	Silent	SNP	C	C	T	rs6843860	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	28	107	0	0.35	0	C|0.735;T|0.265	0.265	strong	.	NDST4	193	.	NM_022569	exon14	c.G2586A	p.S862S	CAGCCACGATGGC	.	PASS	Atlas-SNP
ELF1	1997	hgsc.bcm.edu	37	13	41533052	41533052	+	Missense_Mutation	SNP	T	T	C	rs7799	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	70	150	0	0.429448	0	T|0.508;C|0.492	0.492	strong	ELF1,colon,carcinoma,0,1	ELF1	65	1	NM_001145353	exon2	c.A173G	p.N58S	ATGTCATTGGGCT	.	PASS	Atlas-SNP
NAP1L1	4673	hgsc.bcm.edu	37	12	76453966	76453966	+	Silent	SNP	G	G	A	rs79950675		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	336	150	329	0	0.446429	0	.	.	weak	.	NAP1L1	33	.	NM_004537	exon5	c.C300T	p.H100H	AAGATCGTGAACT	.	PASS	Atlas-SNP
PAPOLB	56903	hgsc.bcm.edu	37	7	4900341	4900341	+	Silent	SNP	G	G	A	rs17135247	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	232	232	164	0	1	0	G|0.777;A|0.223	0.223	strong	PAPOLB_ENST00000404991,NS,carcinoma,-1,2	PAPOLB	93	2	NM_020144	exon1	c.C1101T	p.S367S	AAAGAAGCTTGGA	.	PASS	Atlas-SNP
MAVS	57506	hgsc.bcm.edu	37	20	3846397	3846397	+	Missense_Mutation	SNP	C	C	T	rs7269320	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	48	104	0	0.484848	0	C|0.786;T|0.214	0.214	strong	.	MAVS	34	.	NM_020746	exon7	c.C1226T	p.S409F	GCAGCTCTGAGAA	.	PASS	Atlas-SNP
DMRT2	10655	hgsc.bcm.edu	37	9	1056569	1056569	+	Missense_Mutation	SNP	G	G	A	rs140004479	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	75	99	0	0.581395	0	G|0.997;A|0.003	0.003	strong	.	DMRT2	70	.	NM_181872	exon4	c.G982A	p.V328M	GTCAGCGTGGCCA	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152277396	152277396	+	Silent	SNP	T	T	C	rs6681433	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	246	128	204	0	0.520325	0	T|0.794;C|0.206	0.206	strong	.	FLG	900	.	NM_002016	exon3	c.A9966G	p.Q3322Q	TGAAGCTTGTCCA	.	PASS	Atlas-SNP
SNRNP35	11066	hgsc.bcm.edu	37	12	123950408	123950408	+	Silent	SNP	A	A	G	rs28728202	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	20	37	0	0.465116	0	A|0.995;G|0.005	0.005	strong	.	SNRNP35	28	.	NM_180699	exon2	c.A336G	p.K112K	GATCAAAGCTTAC	.	PASS	Atlas-SNP
MNDA	4332	hgsc.bcm.edu	37	1	158813819	158813819	+	Silent	SNP	A	A	G	rs857870	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	62	153	0	0.402597	0	A|0.493;G|0.507	0.507	strong	.	MNDA	147	.	NM_002432	exon4	c.A477G	p.P159P	GCCCCCAGGTCCC	.	PASS	Atlas-SNP
VOPP1	81552	hgsc.bcm.edu	37	7	55540707	55540707	+	Silent	SNP	G	G	A	rs815957	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	304	139	274	0	0.457237	0	G|0.651;A|0.348	0.348	strong	.	VOPP1	14	.	NM_030796	exon5	c.C360T	p.T120T	TGGGTCGGTGTAA	.	PASS	Atlas-SNP
VILL	50853	hgsc.bcm.edu	37	3	38047680	38047680	+	Silent	SNP	G	G	A	rs11707277	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	57	114	0	0.508929	0	G|0.881;A|0.119	0.119	strong	VILL,NS,carcinoma,+1,2	VILL	61	2	NM_015873	exon17	c.G2142A	p.P714P	CCACCCGTCCCAC	.	PASS	Atlas-SNP
OLFML1	283298	hgsc.bcm.edu	37	11	7507174	7507174	+	Missense_Mutation	SNP	C	C	T	rs80215761	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	221	146	222	0	0.660634	0	C|0.983;T|0.017	0.017	strong	.	OLFML1	54	.	NM_198474	exon1	c.C68T	p.P23L	CCCCGCCGCAGTG	.	PASS	Atlas-SNP
CCL3	6348	hgsc.bcm.edu	37	17	34416537	34416537	+	Silent	SNP	G	G	A	rs1130371	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	364	203	328	0	0.557692	0	G|0.795;A|0.205	0.205	strong	.	CCL3	8	.	NM_002983	exon2	c.C180T	p.P60P	GACACCGGGCTTG	.	PASS	Atlas-SNP
PMS2	5395	hgsc.bcm.edu	37	7	6026942	6026942	+	Missense_Mutation	SNP	G	G	T	rs1805323	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	33	56	0	0.428571	0	G|0.944;T|0.056	0.056	strong	PMS2,NS,carcinoma,+1,2	PMS2	88	2	NM_000535	exon11	c.C1454A	p.T485K	CTGTCCGTAGGGT	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	37	2	238245107	238245107	+	Missense_Mutation	SNP	G	G	A	rs150907698	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	198	103	164	0	0.520202	0	G|0.999;A|0.001	0.001	strong	COL6A3,rectum,carcinoma,0,1	COL6A3	608	1	NM_004369	exon40	c.C8636T	p.T2879M	TTCGTCGTAGTCA	.	PASS	Atlas-SNP
CDK11A	728642	hgsc.bcm.edu	37	1	1635004	1635004	+	Silent	SNP	T	T	C	rs874516	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	82	83	0	0.429319	0	T|0.444;C|0.556	0.556	strong	.	CDK11A	38	.	NM_024011	exon18	c.A1971G	p.K657K	CATCTTTTTGACT	.	PASS	Atlas-SNP
NUP155	9631	hgsc.bcm.edu	37	5	37294473	37294473	+	Silent	SNP	T	T	C	rs1045908	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	212	109	186	0	0.514151	0	T|0.750;C|0.250	0.250	strong	NUP155,NS,carcinoma,0,1	NUP155	116	1	NM_153485	exon33	c.A3888G	p.L1296L	TCTAGGTAATGGT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105408811	105408811	+	Missense_Mutation	SNP	A	A	G	rs2819421	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	159	158	158	1	0.993711	0.00632911	A|0.505;G|0.495	0.495	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T12977C	p.L4326P	ACCTTCAGCGCAG	.	PASS	Atlas-SNP
MPHOSPH10	10199	hgsc.bcm.edu	37	2	71365676	71365676	+	Silent	SNP	G	G	A	rs357756	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	37	76	1	0.411111	0.0131579	G|0.712;A|0.288	0.288	strong	MPHOSPH10,rectum,carcinoma,0,1	MPHOSPH10	81	1	NM_005791	exon5	c.G1155A	p.Q385Q	GTGGCAGCTTCAG	.	scavenged	Atlas-SNP
SLC16A7	9194	hgsc.bcm.edu	37	12	60169010	60169010	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	217	3	183	0	0.0138249	0	.	.	none	SLC16A7,NS,carcinoma,0,4	SLC16A7	82	4	NM_001270622	exon5	c.C934T	p.R312X	CGACCTCGAATTC	.	scavenged	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	37	4	25005193	25005193	+	Silent	SNP	G	G	A	rs2232028	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	153	153	0	1	0	G|0.332;A|0.668	0.668	strong	.	LGI2	62	.	NM_018176	exon8	c.C1518T	p.Y506Y	CTGCACGTAAATC	.	PASS	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31324934	31324934	+	Missense_Mutation	SNP	A	A	G	rs7232237	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	62	0	0.526316	0	A|0.319;G|0.681	0.681	strong	.	ASXL3	405	.	NM_030632	exon12	c.A5122G	p.M1708V	CAGAACATGAAAG	.	PASS	Atlas-SNP
TNC	3371	hgsc.bcm.edu	37	9	117853022	117853022	+	Silent	SNP	C	C	T	rs944510	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	83	138	1	0.572414	0.00724638	C|0.530;T|0.470	0.470	strong	TNC,NS,carcinoma,0,1	TNC	282	1	NM_002160	exon2	c.G276A	p.V92V	CCCATCCACTGTG	.	scavenged	Atlas-SNP
TNIP1	10318	hgsc.bcm.edu	37	5	150425467	150425467	+	Silent	SNP	G	G	A	rs2233299	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	24	48	0	0.470588	0	G|0.803;A|0.197	0.197	strong	.	TNIP1	51	.	NM_001252385	exon9	c.C891T	p.G297G	GGCTGCGCCCAAG	.	PASS	Atlas-SNP
CD300A	11314	hgsc.bcm.edu	37	17	72469966	72469966	+	Missense_Mutation	SNP	G	G	A	rs78031008	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	250	122	261	0	0.488	0	.	.	weak	.	CD300A	40	.	NM_007261	exon2	c.G332A	p.R111Q	GGCTCCGAGACTT	.	PASS	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	37	2	102851708	102851708	+	Missense_Mutation	SNP	T	T	C	rs2302612	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	63	106	0	0.588785	0	T|0.699;C|0.301	0.301	strong	IL1RL2_ENST00000441515,NS,carcinoma,-1,2	IL1RL2	118	2	NM_003854	exon11	c.T1649C	p.L550P	AGCTGCTGCAGCA	.	PASS	Atlas-SNP
DPCD	25911	hgsc.bcm.edu	37	10	103361088	103361088	+	Silent	SNP	C	C	T	rs7874	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	73	159	0	0.521429	0	C|0.854;T|0.146	0.146	strong	.	DPCD	15	.	NM_015448	exon4	c.C399T	p.N133N	AACCAACAAGAAG	.	PASS	Atlas-SNP
RLN1	6013	hgsc.bcm.edu	37	9	5339738	5339738	+	Silent	SNP	G	G	A	rs56235721	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	91	206	0	0.4375	0	G|0.950;A|0.050	0.050	strong	.	RLN1	16	.	NM_006911	exon1	c.C9T	p.R3R	GAACAGGCGAGGC	.	PASS	Atlas-SNP
SUN2	25777	hgsc.bcm.edu	37	22	39134715	39134715	+	Silent	SNP	T	T	C	rs1062687	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	47	69	0	0.52809	0	T|0.620;C|0.380;A|0.000	0.380	strong	.	SUN2	59	.	NM_001199579	exon16	c.A1887G	p.Q629Q	GAAGCCTTGTGGC	.	PASS	Atlas-SNP
IZUMO2	126123	hgsc.bcm.edu	37	19	50666389	50666389	+	Silent	SNP	G	G	A	rs61742305	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	37	47	0	0.45679	0	G|0.859;A|0.141	0.141	strong	IZUMO2,NS,carcinoma,0,1	IZUMO2	26	1	NM_152358	exon1	c.C63T	p.C21C	CTGCAGGCAGCCC	.	PASS	Atlas-SNP
KLHL30	377007	hgsc.bcm.edu	37	2	239049537	239049537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	44	102	0	0.647059	0	.	.	none	.	KLHL30	79	.	NM_198582	exon2	c.C142T	p.R48C	TGCCACCGCGGCC	.	PASS	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	37	10	49383976	49383976	+	Missense_Mutation	SNP	T	T	C	rs76009671		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	442	184	263	0	0.41629	0	T|0.500;C|0.500	0.500	weak	FRMPD2,NS,carcinoma,0,1	FRMPD2	157	1	NM_001018071	exon23	c.A2902G	p.I968V	TGTTAATGCCACC	.	scavenged	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412541	105412541	+	Missense_Mutation	SNP	C	C	T	rs12433837	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	78	200	0	0.975	0	C|0.760;T|0.240	0.240	strong	.	AHNAK2	719	.	NM_138420	exon7	c.G9247A	p.V3083I	CCTTGACATCTAT	.	PASS	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	37	6	70984436	70984436	+	Missense_Mutation	SNP	A	A	G	rs592121	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	20	47	1	0.487805	0.0212766	A|0.531;G|0.469	0.469	strong	COL9A1_ENST00000320755,NS,adenoma,0,2	COL9A1	228	2	NM_001851	exon11	c.T1015C	p.S339P	CCTTTGACCCAAT	.	scavenged	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	37	12	56814656	56814656	+	Missense_Mutation	SNP	A	A	G	rs61376834	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	37	91	0	0.406593	0	A|0.964;G|0.036	0.036	strong	.	TIMELESS	107	.	NM_003920	exon25	c.T3050C	p.I1017T	AGCGGGATAGAAA	.	PASS	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	37	22	45244930	45244930	+	Silent	SNP	C	C	T	rs2269543	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	90	83	0	1	0	C|0.642;N|0.001	.	strong	.	PRR5-ARHGAP8	53	.	NM_181334	exon13	c.C1233T	p.L411L	GATTCTCGGGATC	.	PASS	Atlas-SNP
NUGGC	389643	hgsc.bcm.edu	37	8	27886903	27886903	+	Silent	SNP	C	C	T	rs9314357	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	46	115	0	0.442308	0	C|0.663;T|0.337	0.337	strong	.	.	.	.	NM_001010906	exon17	c.G2034A	p.T678T	TTTGCCCGTGATC	.	PASS	Atlas-SNP
STK33	65975	hgsc.bcm.edu	37	11	8435078	8435078	+	Missense_Mutation	SNP	A	A	C	rs3751096	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	402	190	377	0	0.472637	0	A|0.792;C|0.208	0.208	strong	.	STK33	147	.	NM_030906	exon13	c.T1308G	p.D436E	ATTGGCATCAGGG	.	PASS	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	37	19	36273308	36273308	+	Silent	SNP	G	G	A	rs35297478	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	33	54	0	0.464789	0	G|0.905;A|0.095	0.095	strong	.	ARHGAP33	102	.	NM_052948	exon13	c.G1119A	p.L373L	GGAGCTGTCTGGC	.	PASS	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	37	12	12284915	12284915	+	Silent	SNP	G	G	A	rs1012672	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	234	112	205	0	0.478632	0	G|0.943;A|0.057	0.057	strong	.	LRP6	170	.	NM_002336	exon18	c.C3810T	p.C1270C	CCCATCGCACCGC	.	PASS	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61443870	61443870	+	Silent	SNP	C	C	G	rs11086139	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	32	65	0	0.592593	0	C|0.800;G|0.200	0.200	strong	.	OGFR	63	.	NM_007346	exon7	c.C903G	p.P301P	TCTGCCCCATCCG	.	PASS	Atlas-SNP
COQ6	51004	hgsc.bcm.edu	37	14	74424938	74424938	+	Silent	SNP	T	T	C	rs3180946	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	118	199	0	0.487603	0	T|0.737;C|0.263	0.263	strong	.	COQ6	27	.	NM_182476	exon5	c.T570C	p.H190H	GGTTCATATTACC	.	PASS	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	37	10	104140355	104140355	+	Silent	SNP	C	C	T	rs112809254	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	70	110	0	0.466667	0	A|0.000;C|0.966;G|0.000;T|0.034	0.034	strong	.	GBF1	142	.	NM_004193	exon38	c.C5082T	p.P1694P	CGGCCCCTCGGCC	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	37	2	238277573	238277573	+	Silent	SNP	C	C	A	rs2645774	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	37	92	0	0.480519	0	C|0.757;A|0.243	0.243	strong	.	COL6A3	608	.	NM_004369	exon10	c.G4533T	p.G1511G	TGGGGACCCCCCT	.	PASS	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3733831	3733831	+	Silent	SNP	G	G	A	rs34564453	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	67	154	0	0.452703	0	G|0.974;A|0.026	0.026	strong	.	TJP3	79	.	NM_001267561	exon7	c.G825A	p.L275L	AAGCCTGCTGGTG	.	PASS	Atlas-SNP
LRRC38	126755	hgsc.bcm.edu	37	1	13802325	13802325	+	Missense_Mutation	SNP	T	T	C	rs3013105	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	58	71	0	1	0	C|0.487;N|0.000	0.487	strong	LRRC38,NS,meningioma,0,1	LRRC38	12	1	NM_001010847	exon2	c.A874G	p.K292E	CATCCTTGTCCTC	.	PASS	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	37	1	18807536	18807536	+	Missense_Mutation	SNP	G	G	T	rs7512414	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	262	122	237	0	0.465649	0	G|0.888;T|0.112	0.112	strong	.	KLHDC7A	60	.	NM_152375	exon1	c.G61T	p.V21L	GGCAAGGTGGTGC	.	PASS	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	37	7	12610594	12610594	+	Missense_Mutation	SNP	A	A	G	rs2240572	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	71	156	0	0.510791	0	A|0.609;G|0.391	0.391	strong	SCIN_ENST00000297029,NS,carcinoma,0,6	SCIN	105	6	NM_001112706	exon1	c.A182G	p.H61R	CCTACCACCTGCA	.	PASS	Atlas-SNP
WWOX	51741	hgsc.bcm.edu	37	16	78420775	78420775	+	Missense_Mutation	SNP	G	G	A	rs11545029	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	106	104	0	1	0	G|0.653;A|0.347	0.347	strong	.	WWOX	98	.	NM_016373	exon6	c.G535A	p.A179T	GTAGAAGCAATGA	.	PASS	Atlas-SNP
INO80D	54891	hgsc.bcm.edu	37	2	206911228	206911228	+	Missense_Mutation	SNP	G	G	A	rs2909111	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	62	33	54	0	0.532258	0	G|0.629;A|0.371	0.371	strong	.	INO80D	134	.	NM_017759	exon5	c.C1073T	p.A358V	ACTTACGCATGTC	.	PASS	Atlas-SNP
GABRR2	2570	hgsc.bcm.edu	37	6	89981413	89981413	+	Silent	SNP	T	T	C	rs282117	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	46	93	0	0.5	0	T|0.334;C|0.666	0.666	strong	GABRR2,NS,carcinoma,0,1	GABRR2	41	1	NM_002043	exon3	c.A249G	p.V83V	CACCTGTACGTCC	.	PASS	Atlas-SNP
EIF2AK1	27102	hgsc.bcm.edu	37	7	6066461	6066461	+	Silent	SNP	T	T	C	rs2639	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	67	140	0	0.449664	0	T|0.699;C|0.301	0.301	strong	EIF2AK1,NS,carcinoma,0,1	EIF2AK1	76	1	NM_014413	exon14	c.A1662G	p.P554P	TTGCACTGGACAC	.	PASS	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	37	16	57059427	57059427	+	Missense_Mutation	SNP	C	C	T	rs74439742	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	50	94	0	0.462963	0	C|0.861;T|0.139	0.139	strong	.	NLRC5	186	.	NM_032206	exon5	c.C572T	p.P191L	ACACTCCGGAGGG	.	PASS	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	37	6	170162537	170162537	+	Silent	SNP	C	C	T	rs11966349	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	49	135	0	0.411765	0	C|0.838;T|0.162	0.162	strong	.	C6orf70	63	.	NM_018341	exon9	c.C870T	p.C290C	TGACTGCGCCATA	.	PASS	Atlas-SNP
CD4	920	hgsc.bcm.edu	37	12	6924109	6924109	+	Silent	SNP	C	C	T	rs11575099	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	71	181	0	0.432927	0	C|0.979;T|0.021	0.021	strong	.	CD4	47	.	NM_000616	exon5	c.C558T	p.V186V	CACTGTCTTGCAG	.	PASS	Atlas-SNP
CPNE1	8904	hgsc.bcm.edu	37	20	34219496	34219496	+	Missense_Mutation	SNP	T	T	C	rs6579255	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	32	60	0	0.484848	0	T|0.753;C|0.247	0.247	strong	.	CPNE1	44	.	NM_003915	exon8	c.A647G	p.Q216R	GAGCATTGCACCT	.	PASS	Atlas-SNP
OR11H6	122748	hgsc.bcm.edu	37	14	20691962	20691962	+	Missense_Mutation	SNP	C	C	G	rs9323693	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	259	123	232	0	0.474903	0	C|0.918;G|0.082	0.082	strong	.	OR11H6	60	.	NM_001004480	exon1	c.C94G	p.L32V	TTTGTCCTCCTGG	.	PASS	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	37	19	36339063	36339063	+	Silent	SNP	G	G	A	rs392702	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	26	55	0	0.440678	0	G|0.919;A|0.081	0.081	strong	.	NPHS1	165	.	NM_004646	exon11	c.C1320T	p.P440P	CTGGGCGGGATCT	.	PASS	Atlas-SNP
ZBTB49	166793	hgsc.bcm.edu	37	4	4304337	4304337	+	Silent	SNP	C	C	T	rs2916382	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	78	81	0	1	0	C|0.177;T|0.823	0.823	strong	.	ZBTB49	63	.	NM_145291	exon3	c.C774T	p.A258A	TTGTGCCGTCAGT	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415748	105415748	+	Missense_Mutation	SNP	G	G	A	rs118171013	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	95	187	0	1	0	G|0.636;A|0.364	0.364	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C6040T	p.P2014S	GTGCAGGCACATC	.	PASS	Atlas-SNP
EXOC3L2	90332	hgsc.bcm.edu	37	19	45716364	45716364	+	Missense_Mutation	SNP	C	C	T	rs189063316	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	18	26	0	0.62069	0	C|0.992;T|0.008	0.008	strong	EXOC3L2,NS,lymphoid_neoplasm,0,1	EXOC3L2	30	1	NM_138568	exon10	c.G1193A	p.R398Q	GGAGGCCGGGGCC	.	scavenged	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99141205	99141205	+	Silent	SNP	A	A	G	rs2275089	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	97	160	0	0.551136	0	A|0.622;G|0.378	0.378	strong	.	RRP12	97	.	NM_015179	exon12	c.T1356C	p.A452A	AATGTCAGCCATG	.	PASS	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	37	13	76397731	76397731	+	Missense_Mutation	SNP	G	G	A	rs4884021	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	35	67	0	0.454545	0	G|0.735;A|0.265	0.265	strong	.	LMO7	334	.	NM_015842	exon12	c.G1972A	p.V658I	GGAGATGTTGAAG	.	PASS	Atlas-SNP
CCDC109B	55013	hgsc.bcm.edu	37	4	110605744	110605744	+	Missense_Mutation	SNP	A	A	T	rs13846	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	214	104	181	0	0.485981	0	A|0.778;T|0.222	0.222	strong	.	CCDC109B	47	.	NM_017918	exon6	c.A758T	p.Y253F	TTACATACTTCAT	.	PASS	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	37	17	2883588	2883588	+	Missense_Mutation	SNP	C	C	A	rs17762452	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	145	135	0	1	0	C|0.737;A|0.263	0.263	strong	.	RAP1GAP2	90	.	NM_015085	exon9	c.C604A	p.L202M	TCCAAACTGAAGA	.	PASS	Atlas-SNP
TRIML2	205860	hgsc.bcm.edu	37	4	189012728	189012728	+	Silent	SNP	G	G	C	rs2279550	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	57	129	0	0.459677	0	G|0.393;C|0.607	0.607	strong	.	TRIML2	80	.	NM_173553	exon7	c.C963G	p.G321G	GAAAACGCCAACT	.	PASS	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	37	19	56369593	56369593	+	Silent	SNP	T	T	C	rs421810	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	61	113	0	0.635417	0	T|0.545;C|0.454	0.454	strong	NLRP4_ENST00000301295,colon,carcinoma,+2,1	NLRP4	331	1	NM_134444	exon3	c.T834C	p.A278A	CATCGCTATCAAA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105408315	105408315	+	Silent	SNP	T	T	C	rs28600075	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	202	166	1	0.990196	0.0060241	T|0.466;C|0.534	0.534	strong	.	AHNAK2	719	.	NM_138420	exon7	c.A13473G	p.P4491P	CATCTTTGGCGCA	.	PASS	Atlas-SNP
LRRC70	100130733	hgsc.bcm.edu	37	5	61876773	61876773	+	Missense_Mutation	SNP	C	C	T	rs115682516	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	48	82	0	0.48	0	C|0.988;T|0.012	0.012	strong	.	LRRC70	19	.	NM_181506	exon2	c.C1508T	p.P503L	CTCTACCGAATGA	.	PASS	Atlas-SNP
LYZL2	119180	hgsc.bcm.edu	37	10	30915078	30915078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	93	164	0	0.442857	0	.	.	none	.	LYZL2	33	.	NM_183058	exon3	c.G392A	p.R131H	TTTCCGCGTCTGC	.	PASS	Atlas-SNP
TBXA2R	6915	hgsc.bcm.edu	37	19	3595923	3595923	+	Silent	SNP	G	G	A	rs1131882	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	42	76	0	0.512195	0	G|0.733;A|0.267	0.267	strong	TBXA2R,NS,carcinoma,0,1	TBXA2R	31	1	NM_201636	exon3	c.C795T	p.I265I	CTGGGCGATGAAG	.	PASS	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	37	6	168343838	168343838	+	Silent	SNP	T	T	C	rs1132306	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	172	75	175	0	0.436047	0	T|0.525;C|0.475	0.475	strong	.	MLLT4	351	.	NM_001040000	exon23	c.T3108C	p.Y1036Y	AATCTATGTGAAG	.	PASS	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	50028308	50028308	+	Silent	SNP	C	C	T	rs41283279	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	299	146	263	0	0.488294	0	C|0.958;T|0.042	0.042	strong	.	WDFY4	205	.	NM_020945	exon33	c.C5535T	p.T1845T	GAACACCAGCAGT	.	PASS	Atlas-SNP
POLRMT	5442	hgsc.bcm.edu	37	19	621712	621712	+	Silent	SNP	A	A	G	rs2238547	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	18	56	0	0.439024	0	A|0.472;G|0.528	0.528	strong	POLRMT,NS,carcinoma,0,1	POLRMT	91	1	NM_005035	exon10	c.T1986C	p.A662A	CAGGAAAGCACCA	.	PASS	Atlas-SNP
C1orf106	55765	hgsc.bcm.edu	37	1	200867492	200867492	+	Silent	SNP	C	C	G	rs2271018	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	59	94	0	0.572816	0	C|0.788;G|0.212	0.212	strong	.	C1orf106	59	.	NM_018265	exon2	c.C261G	p.P87P	TCCCCCCTCCCTG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105413790	105413790	+	Silent	SNP	G	G	A	rs11848564	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	268	268	244	0	1	0	G|0.610;A|0.390	0.390	strong	.	AHNAK2	719	.	NM_138420	exon7	c.C7998T	p.S2666S	CTCGATGGACTCG	.	PASS	Atlas-SNP
BAIAP3	8938	hgsc.bcm.edu	37	16	1397815	1397815	+	Silent	SNP	C	C	T	rs1132358	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	28	14	17	0	0.5	0	C|0.656;T|0.344	0.344	strong	BAIAP3,NS,carcinoma,0,1	BAIAP3	88	1	NM_003933	exon31	c.C3123T	p.D1041D	CCTGGACGCCAAC	.	PASS	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	37	9	131767668	131767668	+	Silent	SNP	A	A	C	rs2287363	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	55	52	0	1	0	A|0.553;C|0.447	0.447	strong	.	NUP188	140	.	NM_015354	exon40	c.A4596C	p.S1532S	CTCCTCAAAGCAG	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57983194	57983194	+	Missense_Mutation	SNP	A	A	G	rs7103033	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	40	103	0	0.444444	0	A|0.672;G|0.328	0.328	strong	.	OR1S1	139	.	NM_001004458	exon1	c.A978G	p.X326W	CCTTTGATGCCCT	.	PASS	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	37	10	122624679	122624679	+	Silent	SNP	G	G	A	rs10886789	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	75	141	1	0.506757	0.0070922	G|0.708;A|0.292	0.292	strong	WDR11,NS,carcinoma,0,1	WDR11	95	1	NM_018117	exon6	c.G834A	p.T278T	TCAGACGGTGGGT	.	scavenged	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418391	105418391	+	Missense_Mutation	SNP	C	C	T	rs11625007	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	182	137	1	0.994536	0.00729927	C|0.570;T|0.430	0.430	strong	AHNAK2_ENST00000333244,colon,carcinoma,0,3	AHNAK2	719	3	NM_138420	exon7	c.G3397A	p.V1133I	CCTCGACGTCCAC	.	PASS	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	37	13	28893642	28893642	+	Silent	SNP	A	A	G	rs2296189	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	104	99	0	1	0	A|0.792;G|0.208	0.208	strong	.	FLT1	393	.	NM_002019	exon24	c.T3204C	p.P1068P	AGATTCAGGAGCC	.	PASS	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57970967	57970967	+	Silent	SNP	G	G	A	rs138762515		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	9	113	0	0.0656934	0	G|0.999;A|0.001	0.001	weak	OR1S2,NS,carcinoma,0,2	OR1S2	119	2	NM_001004459	exon1	c.C687T	p.F229F	ATAGGAGAAGAAG	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280471	152280471	+	Missense_Mutation	SNP	C	C	G	rs78179835	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	797	219	506	1	0.27478	0.00197628	.	.	weak	.	FLG	900	.	NM_002016	exon3	c.G6891C	p.E2297D	GGAGCTCTCTGCA	.	PASS	Atlas-SNP
ACTL7B	10880	hgsc.bcm.edu	37	9	111618209	111618209	+	Missense_Mutation	SNP	A	A	G	rs17728850	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	26	45	0	0.40625	0	A|0.915;G|0.085	0.085	strong	.	ACTL7B	57	.	NM_006686	exon1	c.T2C	p.M1T	GTCGCCATCTGCC	.	PASS	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	37	X	128582381	128582381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	120	7	112	0	0.0583333	0	.	.	none	.	SMARCA1	126	.	NM_003069	exon24	c.G3070A	p.E1024K	CTTTCTCAATCAA	.	PASS	Atlas-SNP
MIOS	54468	hgsc.bcm.edu	37	7	7613039	7613039	+	Silent	SNP	C	C	T	rs61744397	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	145	66	157	0	0.455172	0	C|0.902;T|0.098	0.098	strong	.	MIOS	68	.	NM_019005	exon4	c.C933T	p.P311P	TGAACCCACAATA	.	PASS	Atlas-SNP
ACTL9	284382	hgsc.bcm.edu	37	19	8808942	8808942	+	Missense_Mutation	SNP	A	A	G	rs2340550	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	66	137	0	0.44898	0	A|0.267;G|0.733	0.733	strong	.	ACTL9	74	.	NM_178525	exon1	c.T110C	p.F37S	CCGGGGAAGTCCC	.	PASS	Atlas-SNP
UBP1	7342	hgsc.bcm.edu	37	3	33434831	33434831	+	Silent	SNP	G	G	A	rs2293250	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	42	71	0	0.461538	0	G|0.490;N|0.001	.	strong	.	UBP1	42	.	NM_014517	exon14	c.C1506T	p.T502T	AATACCGGTGGGA	.	PASS	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	37	8	27301725	27301725	+	Silent	SNP	C	C	G	rs1128435	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	60	112	0	0.638298	0	C|0.913;G|0.087	0.087	strong	PTK2B_ENST00000544172,bladder,carcinoma,+1,3	PTK2B	304	3	NM_173174	exon28	c.C2151G	p.P717P	CCAGCCCAGCCGA	.	PASS	Atlas-SNP
NIPAL1	152519	hgsc.bcm.edu	37	4	48037926	48037926	+	Missense_Mutation	SNP	A	A	G	rs13116684	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	250	149	299	1	0.596	0.00334448	A|0.792;G|0.208	0.208	strong	.	NIPAL1	29	.	NM_207330	exon6	c.A970G	p.I324V	TCTGCCATCTTAT	.	PASS	Atlas-SNP
FUT2	2524	hgsc.bcm.edu	37	19	49207206	49207206	+	Silent	SNP	A	A	G	rs485186	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	170	79	206	0	0.464706	0	A|0.553;G|0.447	0.447	strong	.	FUT2	30	.	NM_001097638	exon2	c.A993G	p.T331T	GTGGACAGGGATT	.	PASS	Atlas-SNP
APOL5	80831	hgsc.bcm.edu	37	22	36122811	36122811	+	Silent	SNP	G	G	A	rs4821441	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	76	210	0	0.374384	0	G|0.940;A|0.060	0.060	strong	.	APOL5	45	.	NM_030642	exon3	c.G696A	p.K232K	TAATAAGTGTGTA	.	PASS	Atlas-SNP
RASGRP2	10235	hgsc.bcm.edu	37	11	64496357	64496357	+	Silent	SNP	G	G	T	rs2230414	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	50	29	34	0	0.58	0	G|0.850;T|0.150	0.150	strong	.	RASGRP2	48	.	NM_001098671	exon15	c.C1749A	p.G583G	TCGCCTGCCAGGG	.	PASS	Atlas-SNP
FAM26F	441168	hgsc.bcm.edu	37	6	116784797	116784797	+	Missense_Mutation	SNP	G	G	A	rs11544160	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	187	102	159	0	0.545455	0	G|0.951;A|0.049	0.049	strong	.	FAM26F	12	.	NM_001010919	exon3	c.T877A	p.S293T	TCTACTGAAGGAG	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43924130	43924130	+	Missense_Mutation	SNP	G	G	A	rs12373139	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	119	87	0	1	0	G|0.856;A|0.144	0.144	strong	.	.	.	.	NM_175882	exon1	c.G1858A	p.G620R	CCCCCTGGGGCCT	.	PASS	Atlas-SNP
ZNF160	90338	hgsc.bcm.edu	37	19	53572917	53572917	+	Silent	SNP	G	G	A	rs10407463	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	48	94	0	0.521739	0	G|0.843;A|0.157	0.157	strong	.	ZNF160	75	.	NM_001102603	exon7	c.C870T	p.C290C	TTTGCCGCACTCA	.	PASS	Atlas-SNP
WDR55	54853	hgsc.bcm.edu	37	5	140048544	140048544	+	Missense_Mutation	SNP	C	C	T	rs2286394	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	126	55	126	0	0.436508	0	C|0.806;T|0.194	0.194	strong	.	WDR55	27	.	NM_017706	exon5	c.C629T	p.S210F	CTCAGTCTGGGGA	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123113428	123113428	+	Missense_Mutation	SNP	A	A	G	rs74643640	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	94	167	0	0.52809	0	A|0.952;G|0.048	0.048	strong	.	KIAA1109	424	.	NM_015312	exon9	c.A946G	p.S316G	GAAATGAGCAGTG	.	PASS	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	37	X	117053499	117053499	+	Silent	SNP	C	C	T	rs6645994	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	136	136	165	0	1	0	C|0.688;0|0.003	.	strong	.	KLHL13	87	.	NM_001168299	exon5	c.G564A	p.V188V	GAGAAACACTTTA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179578730	179578730	+	Silent	SNP	G	G	A	rs2562839	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	77	148	0	0.461078	0	G|0.613;A|0.387	0.387	strong	.	TTN	18412	.	NM_001267550	exon92	c.C26655T	p.S8885S	AAGGCCGGATACT	.	PASS	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	37	2	159954175	159954175	+	Missense_Mutation	SNP	C	C	T	rs34588551	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	55	95	0	0.495495	0	C|0.753;T|0.247	0.247	strong	.	TANC1	157	.	NM_033394	exon4	c.C88T	p.P30S	ACTTCTCCAGTCC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037419	33037419	+	Silent	SNP	G	G	A	rs1126543	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	62	158	0	0.382716	0	G|0.700;A|0.300	0.300	strong	.	HLA-DPA1	20	.	NM_033554	exon2	c.C345T	p.N115N	CGTACCGTTGGTG	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940779	144940779	+	Missense_Mutation	SNP	G	G	A	rs11781942	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	51	66	0	0.515152	0	G|0.904;A|0.096	0.096	strong	.	EPPK1	199	.	NM_031308	exon1	c.C6643T	p.R2215C	TGACGCGGTCGTC	.	PASS	Atlas-SNP
XRCC4	7518	hgsc.bcm.edu	37	5	82648943	82648943	+	Splice_Site	SNP	G	G	A	rs1805377	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	86	201	0	0.464865	0	G|0.679;A|0.321	0.321	strong	.	XRCC4	37	.	NM_022406	exon8	c.894-1G>A	.	TTTTCAGTTCTAG	.	PASS	Atlas-SNP
BCOR	54880	hgsc.bcm.edu	37	X	39933339	39933339	+	Silent	SNP	A	A	G	rs5917933	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	29	19	0	1	0	A|0.093;0|0.003	.	strong	.	BCOR	351	.	NM_001123385	exon4	c.T1260C	p.D420D	GCTGCCATCTTTT	.	PASS	Atlas-SNP
BDNF	627	hgsc.bcm.edu	37	11	27679916	27679916	+	Missense_Mutation	SNP	C	C	T	rs6265	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	37	101	0	0.373737	0	C|0.815;T|0.185	0.185	strong	.	BDNF	63	.	NM_001143810	exon3	c.G442A	p.V148M	CTATCACGTGTTC	.	PASS	Atlas-SNP
HLA-DPA1	3113	hgsc.bcm.edu	37	6	33037560	33037560	+	Silent	SNP	G	G	A	rs1042176	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	130	51	165	0	0.392308	0	G|0.802;A|0.198	0.198	strong	.	HLA-DPA1	20	.	NM_033554	exon2	c.C204T	p.D68D	CTTCTTGTCCAGA	.	PASS	Atlas-SNP
AFAP1L2	84632	hgsc.bcm.edu	37	10	116091629	116091629	+	Missense_Mutation	SNP	T	T	C	rs117043677	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	59	77	0	0.526786	0	T|0.995;C|0.005	0.005	strong	.	AFAP1L2	90	.	NM_032550	exon4	c.A248G	p.N83S	TCCCCATTGGGTA	.	PASS	Atlas-SNP
SNX31	169166	hgsc.bcm.edu	37	8	101586133	101586133	+	Missense_Mutation	SNP	T	T	C	rs2022923	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	47	110	0	0.405172	0	T|0.551;C|0.449	0.449	strong	SNX31,NS,carcinoma,0,1	SNX31	66	1	NM_152628	exon14	c.A1283G	p.D428G	CAGTCATCTTTAG	.	PASS	Atlas-SNP
ZNF718	255403	hgsc.bcm.edu	37	4	155713	155713	+	Missense_Mutation	SNP	A	A	G	rs7440274	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	32	61	0	0.426667	0	A|0.831;G|0.169	0.169	strong	.	.	.	.	NM_001039127	exon4	c.A1238G	p.H413R	ATAATCATAAGAA	.	PASS	Atlas-SNP
SNX29	92017	hgsc.bcm.edu	37	16	12492322	12492322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	80	145	0	0.444444	0	.	.	none	.	SNX29	60	.	NM_032167	exon17	c.A1919T	p.Q640L	TGAGTCAAACGTC	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	37	10	29769647	29769647	+	Silent	SNP	G	G	A	rs10763720	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	64	31	53	0	0.484375	0	G|0.917;A|0.083	0.083	strong	.	SVIL	226	.	NM_021738	exon29	c.C5196T	p.V1732V	ACGGCCGACGTTC	.	PASS	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	37	3	10302045	10302045	+	Silent	SNP	C	C	T	rs2241313	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	46	88	0	0.442308	0	C|0.822;T|0.178	0.178	strong	.	TATDN2	59	.	NM_014760	exon3	c.C639T	p.S213S	ACCAAGCGCAGCA	.	PASS	Atlas-SNP
TFEB	7942	hgsc.bcm.edu	37	6	41658566	41658566	+	Silent	SNP	C	C	T	rs2273068	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	31	57	0	0.469697	0	C|0.882;T|0.118	0.118	strong	.	TFEB	37	.	NM_001167827	exon3	c.G345A	p.G115G	CTTGTTCCCATAG	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197070697	197070697	+	Missense_Mutation	SNP	T	T	C	rs41310927	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	41	47	0	0.630769	0	T|0.700;C|0.300	0.300	strong	.	ASPM	444	.	NM_018136	exon18	c.A7684G	p.S2562G	AGGTGCTTTGTAT	.	PASS	Atlas-SNP
HUS1B	135458	hgsc.bcm.edu	37	6	656810	656810	+	Silent	SNP	A	A	G	rs61748571	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	11	28	0	0.478261	0	A|0.942;G|0.058	0.058	strong	.	HUS1B	26	.	NM_148959	exon1	c.T135C	p.G45G	GCCGGAACCCGCG	.	PASS	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	37	17	5271763	5271763	+	Missense_Mutation	SNP	G	G	C	rs61735455	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	32	76	0	0.426667	0	G|0.969;C|0.031	0.031	strong	.	RABEP1	59	.	NM_004703	exon12	c.G1884C	p.M628I	ACAGATGGTAAGT	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89839766	89839766	+	Missense_Mutation	SNP	G	G	C	rs17232910	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	46	86	0	0.484211	0	G|0.936;C|0.064	0.064	strong	.	FANCA	99	.	NM_000135	exon22	c.C1927G	p.P643A	AGTTGGGTTCTGC	.	PASS	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	37	1	160105367	160105367	+	Silent	SNP	C	C	T	rs17846715	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	83	193	0	0.461111	0	C|0.919;T|0.081	0.081	strong	.	ATP1A2	167	.	NM_000702	exon16	c.C2259T	p.A753A	CTTTGCCTCCATC	.	PASS	Atlas-SNP
TMX4	56255	hgsc.bcm.edu	37	20	7964476	7964476	+	Missense_Mutation	SNP	T	T	C	rs1135711	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	35	102	0	0.454545	0	T|0.968;C|0.032	0.032	strong	.	TMX4	39	.	NM_021156	exon7	c.A644G	p.Y215C	GGCACATAGAAAC	.	PASS	Atlas-SNP
LSP1	4046	hgsc.bcm.edu	37	11	1887806	1887806	+	Missense_Mutation	SNP	T	T	A	rs7938342	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	51	87	0	0.542553	0	T|0.346;A|0.654	0.654	strong	.	LSP1	59	.	NM_001242932	exon2	c.T102A	p.H34Q	ACCTCATCCCAGC	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56373536	56373536	+	Missense_Mutation	SNP	C	C	T	rs41271862	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	175	81	165	0	0.462857	0	C|0.967;T|0.033	0.033	strong	.	DST	1427	.	NM_015548	exon56	c.G11161A	p.D3721N	TTTGGTCAAGCTT	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	37	17	44068924	44068924	+	Silent	SNP	G	G	A	rs1052551	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	168	129	0	0.994083	0	A|0.147;G|0.853;T|0.000	0.147	strong	.	MAPT	135	.	NM_001123066	exon9	c.G1479A	p.P493P	AACCCCGCCCGCT	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	37	3	113376107	113376107	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	13	105	0	0.0878378	0	.	.	none	KIAA2018,colon,carcinoma,0,1	KIAA2018	180	1	NM_001009899	exon7	c.G4422A	p.Q1474Q	TTGTTGCTGTTGC	.	PASS	Atlas-SNP
FUT10	84750	hgsc.bcm.edu	37	8	33246538	33246538	+	Silent	SNP	A	A	G	rs16880849	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	419	190	422	0	0.453461	0	A|0.769;G|0.231	0.231	strong	FUT10,NS,carcinoma,0,1	FUT10	62	1	NM_032664	exon4	c.T1155C	p.D385D	AAATGCATCGATG	.	PASS	Atlas-SNP
CRYGN	155051	hgsc.bcm.edu	37	7	151133271	151133271	+	Silent	SNP	G	G	A	rs2075001	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	26	26	34	0	1	0	G|0.885;A|0.115	0.115	strong	CRYGN,NS,adenoma,0,1	CRYGN	15	1	NM_144727	exon3	c.C411T	p.D137D	CGCTCCGTCCCCG	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64612858	64612858	+	Missense_Mutation	SNP	C	C	A	rs10151658	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	189	206	1	0.994737	0.00485437	C|0.386;A|0.614	0.614	strong	SYNE2,NS,carcinoma,0,1	SYNE2	577	1	NM_182914	exon84	c.C15556A	p.L5186M	AACTGGCTGGAAG	.	PASS	Atlas-SNP
TACC3	10460	hgsc.bcm.edu	37	4	1737502	1737502	+	Silent	SNP	C	C	T	rs11248073	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	47	57	0	0.573171	0	C|0.661;T|0.339	0.339	strong	.	TACC3	69	.	NM_006342	exon8	c.C1689T	p.F563F	CAAGTTCGACCCC	.	PASS	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	37	10	85992478	85992478	+	Silent	SNP	T	T	C	rs3814210	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	59	112	0	0.487603	0	T|0.493;C|0.507	0.507	strong	LRIT1,NS,carcinoma,-1,1	LRIT1	73	1	NM_015613	exon4	c.A1077G	p.G359G	TAGTGCTCCTGGG	.	PASS	Atlas-SNP
CAV3	859	hgsc.bcm.edu	37	3	8775661	8775661	+	Silent	SNP	C	C	T	rs1008642	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	29	76	0	0.402778	0	C|0.636;T|0.364	0.364	strong	.	CAV3	20	.	NM_033337	exon1	c.C99T	p.N33N	CATTAACGAGGAC	.	PASS	Atlas-SNP
CD101	9398	hgsc.bcm.edu	37	1	117554421	117554421	+	Missense_Mutation	SNP	A	A	G	rs3754112	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	63	168	0	0.428571	0	G|0.210;N|0.000	0.210	strong	CD101,NS,adenoma,0,1	CD101	95	1	NM_001256109	exon3	c.A674G	p.N225S	AGCTCAACAAACT	.	PASS	Atlas-SNP
PRSS1	5644	hgsc.bcm.edu	37	7	142459626	142459626	+	Missense_Mutation	SNP	C	C	T	rs145867820	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	6	138	0	0.0625	0	.	.	weak	PRSS1,colon,NS,-1,1	PRSS1	68	1	NM_002769	exon3	c.C202T	p.R68C	ATCAGCCGCATCC	.	scavenged	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	37	16	2161153	2161153	+	Missense_Mutation	SNP	C	C	T	rs147141131	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	61	97	0	0.54955	0	C|0.999;T|0.001	0.001	strong	.	PKD1	184	.	NM_000296	exon15	c.G4015A	p.V1339M	CCCGCACGGTCGT	.	PASS	Atlas-SNP
TAP2	6891	hgsc.bcm.edu	37	6	32797297	32797297	+	Silent	SNP	T	T	C	rs241441	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	70	74	0	1	0	T|0.748;C|0.252	0.252	strong	.	TAP2	98	.	NM_018833	exon11	c.A1812G	p.G604G	CTGGCTTCCCTTC	.	PASS	Atlas-SNP
TEX29	121793	hgsc.bcm.edu	37	13	111980537	111980537	+	Silent	SNP	C	C	T	rs1359428	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	82	176	0	0.448087	0	C|0.529;T|0.471	0.471	strong	.	.	.	.	NM_152324	exon3	c.C66T	p.D22D	GTGTGACGTTCCT	.	PASS	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	37	1	18808069	18808069	+	Silent	SNP	A	A	G	rs7528572	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	19	50	0	0.395833	0	A|0.893;G|0.107	0.107	strong	.	KLHDC7A	60	.	NM_152375	exon1	c.A594G	p.G198G	TCCAGGACTGGGG	.	PASS	Atlas-SNP
RIPK1	8737	hgsc.bcm.edu	37	6	3083369	3083369	+	Silent	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	69	67	0	0.638889	0	.	.	none	.	RIPK1	56	.	NM_003804	exon4	c.T510C	p.N170N	GAATAATGAAGAG	.	PASS	Atlas-SNP
CARD14	79092	hgsc.bcm.edu	37	17	78166326	78166326	+	Missense_Mutation	SNP	G	G	A	rs61751629	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	117	186	0	0.557143	0	G|0.979;A|0.021	0.021	strong	.	CARD14	98	.	NM_024110	exon9	c.G1264A	p.E422K	ACCAGGGAGCCCT	.	PASS	Atlas-SNP
PRSS53	339105	hgsc.bcm.edu	37	16	31096495	31096495	+	Missense_Mutation	SNP	G	G	C	rs72785539	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	240	126	217	0	0.525	0	G|0.999;C|0.001	0.001	strong	.	PRSS53	29	.	NM_001039503	exon7	c.C970G	p.L324V	AGGCCAGCTGTCC	.	PASS	Atlas-SNP
CX3CR1	1524	hgsc.bcm.edu	37	3	39307162	39307162	+	Missense_Mutation	SNP	G	G	A	rs3732378	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	63	123	0	0.425676	0	A|0.101;C|0.011	0.101	strong	CX3CR1_ENST00000358309,NS,adenocarcinoma,+1,4	CX3CR1	91	4	NM_001171174	exon2	c.C935T	p.T312M	GCAACCGTCTCAG	.	PASS	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	37	10	135010568	135010568	+	Missense_Mutation	SNP	G	G	A	rs35152544	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	76	136	0	0.608	0	G|0.933;A|0.067	0.067	strong	.	KNDC1	155	.	NM_152643	exon11	c.G1741A	p.G581S	GTGTGCGGCAGCT	.	PASS	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	37	19	56370166	56370166	+	Silent	SNP	C	C	T	rs379327	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	223	107	229	0	0.479821	0	C|0.899;T|0.101	0.101	strong	NLRP4_ENST00000301295,right_upper_lobe,carcinoma,+1,1	NLRP4	331	1	NM_134444	exon3	c.C1407T	p.H469H	GAGCCACCTTGAT	.	PASS	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	37	9	135772716	135772716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	210	4	165	0	0.0190476	0	.	.	none	TSC1,colon,carcinoma,0,2	TSC1	167	2	NM_000368	exon22	c.G2830A	p.A944T	TCTCTGCGGCCTG	.	scavenged	Atlas-SNP
CEACAM20	125931	hgsc.bcm.edu	37	19	45016116	45016116	+	Missense_Mutation	SNP	A	A	G	rs8100718	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	160	160	207	2	1	0.00966184	A|0.633;G|0.366	0.366	strong	CEACAM20,NS,carcinoma,0,1	CEACAM20	31	1	NM_001102600	exon10	c.T1534C	p.C512R	TATTGCAATACTC	.	PASS	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	37	13	110818598	110818598	+	Missense_Mutation	SNP	T	T	G	rs3742207	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	219	217	272	0	0.990868	0	T|0.688;G|0.312	0.312	strong	.	COL4A1	372	.	NM_001845	exon45	c.A4002C	p.Q1334H	GACGCCTTGATCG	.	PASS	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	37	7	107872816	107872816	+	Silent	SNP	G	G	A	rs2072546	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	178	75	173	0	0.421348	0	G|0.834;A|0.166	0.166	strong	NRCAM_ENST00000379028,colon,carcinoma,0,2	NRCAM	267	2	NM_001037132	exon4	c.C381T	p.N127N	GCGTTCGTTCCTT	.	PASS	Atlas-SNP
PSMG4	389362	hgsc.bcm.edu	37	6	3264502	3264502	+	Missense_Mutation	SNP	G	G	C	rs4959787	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	115	128	0	0.991379	0	G|0.381;C|0.619	0.619	strong	.	PSMG4	23	.	NM_001128592	exon3	c.G310C	p.G104R	AGCAAAGGTCATG	.	PASS	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	37	3	36898036	36898036	+	Silent	SNP	G	G	A	rs62245253	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	77	162	0	0.513333	0	G|0.965;A|0.035	0.035	strong	.	TRANK1	398	.	NM_014831	exon12	c.C3045T	p.Y1015Y	CACCGCGTACTCA	.	PASS	Atlas-SNP
UBP1	7342	hgsc.bcm.edu	37	3	33458266	33458266	+	Missense_Mutation	SNP	T	T	C	rs3736563	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	408	206	402	2	0.504902	0.00497512	T|0.585;C|0.415	0.415	strong	.	UBP1	42	.	NM_001128160	exon3	c.A326G	p.N109S	TTTCCATTGATCT	.	PASS	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103389885	103389885	+	Missense_Mutation	SNP	T	T	G	rs77353067	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	108	233	0	0.507042	0	T|0.992;G|0.008	0.008	strong	.	.	.	.	NM_001146197	exon4	c.A13162C	p.K4388Q	CCTCTTTCCCTTG	.	PASS	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	37	11	129754644	129754644	+	Silent	SNP	A	A	G	rs1131972	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	70	89	0	0.958904	0	A|0.224;G|0.776	0.776	strong	.	NFRKB	101	.	NM_006165	exon5	c.T813C	p.T271T	ACCTGCAGTTTTC	.	PASS	Atlas-SNP
DPP9	91039	hgsc.bcm.edu	37	19	4702090	4702090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	196	6	193	0	0.0306122	0	.	.	none	DPP9,NS,carcinoma,0,1	DPP9	59	1	NM_139159	exon9	c.T961C	p.S321P	CAGGAGAGGGGAC	.	scavenged	Atlas-SNP
SFR1	119392	hgsc.bcm.edu	37	10	105882765	105882765	+	Missense_Mutation	SNP	A	A	G	rs10786783	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	38	17	42	0	0.447368	0	A|0.784;G|0.216	0.216	strong	.	.	.	.	NM_001002759	exon2	c.A56G	p.D19G	CGTCAGACTCAGC	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46929467	46929467	+	Silent	SNP	G	G	A	rs1050351	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	7	7	5	0	1	0	G|0.516;A|0.484	0.484	strong	.	COL18A1	129	.	NM_030582	exon39	c.G3978A	p.A1326A	GCCGGCGCGACCC	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44110541	44110541	+	Silent	SNP	G	G	A	rs35833914	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	176	168	1	1	0.00595238	A|0.144;C|0.000;G|0.856;T|0.000	0.144	strong	.	.	.	.	NM_001193466	exon13	c.C2742T	p.D914D	GGCTGCGTCGGAT	.	PASS	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31768890	31768890	+	Silent	SNP	G	G	A	rs138330927	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	244	108	262	1	0.442623	0.00381679	G|0.999;A|0.001	0.001	strong	.	TSHZ3	549	.	NM_020856	exon2	c.C1809T	p.P603P	TGTCTTGGGCATG	.	PASS	Atlas-SNP
MAVS	57506	hgsc.bcm.edu	37	20	3844929	3844929	+	Missense_Mutation	SNP	C	C	T	rs45437096	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	50	124	0	0.37594	0	C|0.888;T|0.112	0.112	strong	.	MAVS	34	.	NM_020746	exon6	c.C652T	p.R218C	CCATCCCGTGGGC	.	PASS	Atlas-SNP
NSF	4905	hgsc.bcm.edu	37	17	44828931	44828931	+	Silent	SNP	G	G	A	rs199533	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	59	137	0	0.460938	0	G|0.874;A|0.126	0.126	strong	.	NSF	27	.	NM_006178	exon19	c.G2106A	p.K702K	GAAGAAGGTCTGG	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152282917	152282917	+	Missense_Mutation	SNP	G	G	T	rs11204978	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	346	166	344	0	0.479769	0	G|0.836;T|0.164	0.164	strong	.	FLG	900	.	NM_002016	exon3	c.C4445A	p.S1482Y	TCTTGGGATGCTG	.	PASS	Atlas-SNP
CRB2	286204	hgsc.bcm.edu	37	9	126129904	126129904	+	Silent	SNP	C	C	T	rs10818812	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	57	26	52	0	0.45614	0	C|0.729;T|0.271	0.271	strong	.	CRB2	86	.	NM_173689	exon6	c.C993T	p.N331N	CCTCAACGGAGGC	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	37	18	7017322	7017322	+	Silent	SNP	A	A	G	rs539713	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	87	88	0	1	0	A|0.392;G|0.608	0.608	strong	.	LAMA1	458	.	NM_005559	exon20	c.T2763C	p.C921C	GCAGTCACAGAGC	.	PASS	Atlas-SNP
FAM173B	134145	hgsc.bcm.edu	37	5	10239261	10239261	+	Missense_Mutation	SNP	G	G	A	rs2438652	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	95	143	0	0.58642	0	G|0.677;N|0.000	.	strong	.	FAM173B	24	.	NM_199133	exon2	c.C224T	p.T75M	TGCTTCGTAGTTG	.	PASS	Atlas-SNP
CDCA4	55038	hgsc.bcm.edu	37	14	105478102	105478102	+	Silent	SNP	G	G	A	rs3803294	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	128	126	116	1	0.984375	0.00862069	G|0.498;A|0.502	0.502	strong	.	CDCA4	18	.	NM_017955	exon2	c.C165T	p.N55N	GCACAGGTTGGGC	.	PASS	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	37	1	226923264	226923264	+	Silent	SNP	G	G	A	rs708775	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	196	215	0	0.994924	0	G|0.716;A|0.284	0.284	strong	ITPKB_ENST00000429204,NS,carcinoma,0,1	ITPKB	158	1	NM_002221	exon2	c.C1896T	p.A632A	CAGGAAGGCTGAG	.	PASS	Atlas-SNP
RTKN2	219790	hgsc.bcm.edu	37	10	63958112	63958112	+	Missense_Mutation	SNP	T	T	C	rs3125734	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	30	40	0	0.545455	0	T|0.412;C|0.588	0.588	strong	.	RTKN2	68	.	NM_145307	exon12	c.A1385G	p.H462R	TCTTCATGCTGAC	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	37	8	17612043	17612043	+	Missense_Mutation	SNP	G	G	A	rs61733694	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	60	118	1	0.437956	0.00847458	G|0.980;A|0.020	0.020	strong	MTUS1,NS,carcinoma,+1,1	MTUS1	144	1	NM_001001924	exon2	c.C1274T	p.T425M	CACATCGTTTTGT	.	scavenged	Atlas-SNP
RPSA	3921	hgsc.bcm.edu	37	3	39453160	39453160	+	Silent	SNP	G	G	A	rs2269350	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	24	32	0	0.615385	0	G|0.745;A|0.255	0.255	strong	.	RPSA	15	.	NM_001012321	exon4	c.G519A	p.L173L	GGGTTTGATGTGG	.	PASS	Atlas-SNP
OR52E2	119678	hgsc.bcm.edu	37	11	5080068	5080068	+	Missense_Mutation	SNP	G	G	A	rs2500052	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	56	74	0	0.5	0	G|0.476;A|0.524	0.524	strong	OR52E2,colon,carcinoma,0,1	OR52E2	63	1	NM_001005164	exon1	c.C790T	p.R264C	CAAAGCGATGAGT	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10465097	10465097	+	Missense_Mutation	SNP	C	C	T	rs4354268	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	79	184	0	0.530201	0	C|0.615;T|0.385	0.385	strong	.	RP1L1	453	.	NM_178857	exon4	c.G6511A	p.E2171K	CCTCCTCTTCAGC	.	PASS	Atlas-SNP
ANO8	57719	hgsc.bcm.edu	37	19	17444607	17444607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	37	84	0	0.474359	0	.	.	none	.	ANO8	67	.	NM_020959	exon2	c.A109C	p.K37Q	AAAGCTTATCTAG	.	PASS	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	37	7	4876057	4876057	+	Missense_Mutation	SNP	C	C	T	rs3763384	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	72	53	0	1	0	C|0.745;T|0.255	0.255	strong	.	RADIL	110	.	NM_018059	exon3	c.G715A	p.D239N	TGGCGTCGGGGCC	.	PASS	Atlas-SNP
ANGPT4	51378	hgsc.bcm.edu	37	20	860426	860426	+	Silent	SNP	G	G	A	rs61737018	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	29	13	43	0	0.448276	0	G|0.879;A|0.121	0.121	strong	.	ANGPT4	77	.	NM_015985	exon6	c.C1017T	p.T339T	ATTCACGGTGCCA	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50582630	50582630	+	Silent	SNP	G	G	A	rs11704548	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	54	73	0	0.529412	0	G|0.952;A|0.048	0.048	strong	.	MOV10L1	238	.	NM_018995	exon18	c.G2463A	p.P821P	ACAGCCGGCCACC	.	PASS	Atlas-SNP
RIN2	54453	hgsc.bcm.edu	37	20	19915769	19915769	+	Silent	SNP	C	C	T	rs181853315	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	40	87	0	0.47619	0	C|0.995;T|0.005	0.005	strong	.	RIN2	126	.	NM_001242581	exon3	c.C231T	p.I77I	GGAGATCGGAGAA	.	PASS	Atlas-SNP
MMP2	4313	hgsc.bcm.edu	37	16	55527113	55527113	+	Silent	SNP	G	G	A	rs2287074	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	54	115	0	0.439024	0	A|0.353;C|0.000;G|0.647	0.353	strong	.	MMP2	119	.	NM_004530	exon9	c.G1380A	p.T460T	CCCCACGCTGGGC	.	PASS	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	37	17	2929674	2929674	+	Silent	SNP	T	T	C	rs12941934	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	204	83	205	2	0.406863	0.0097561	T|0.421;C|0.579	0.579	strong	RAP1GAP2_ENST00000254695,NS,lymphoid_neoplasm,0,2	RAP1GAP2	90	2	NM_015085	exon21	c.T1896C	p.R632R	CGGCCGTGCCATC	.	scavenged	Atlas-SNP
GGT6	124975	hgsc.bcm.edu	37	17	4463796	4463796	+	Silent	SNP	G	G	A	rs7216474	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	22	53	0	0.536585	0	G|0.838;A|0.162	0.162	strong	.	GGT6	22	.	NM_001122890	exon1	c.C21T	p.P7P	GACCACGGGCTCT	.	PASS	Atlas-SNP
OR52N5	390075	hgsc.bcm.edu	37	11	5799468	5799468	+	Missense_Mutation	SNP	C	C	T	rs12360738	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	59	39	0	0.983333	0	C|0.824;T|0.176	0.176	strong	.	OR52N5	58	.	NM_001001922	exon1	c.G397A	p.V133I	TGGCTACATAGCG	.	PASS	Atlas-SNP
EXD3	54932	hgsc.bcm.edu	37	9	140277826	140277826	+	Missense_Mutation	SNP	C	C	T	rs13291830	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	102	207	0	0.432203	0	C|0.449;T|0.551	0.551	strong	.	EXD3	86	.	NM_017820	exon3	c.G59A	p.R20Q	GGGTCCCGGCCTG	.	PASS	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	37	11	102562700	102562700	+	Missense_Mutation	SNP	C	C	T	rs2509010	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	91	78	0	1	0	C|0.800;T|0.200	0.200	strong	.	MMP27	84	.	NM_022122	exon10	c.G1339A	p.D447N	TAATGTCGTATTC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415281	105415281	+	Silent	SNP	G	G	C	rs146449084	by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	23	229	0	1	0	G|0.842;C|0.158	0.158	strong	AHNAK2_ENST00000333244,NS,carcinoma,-1,1	AHNAK2	719	1	NM_138420	exon7	c.C6507G	p.G2169G	GGACTTGCCTGGG	.	scavenged	Atlas-SNP
OR2B11	127623	hgsc.bcm.edu	37	1	247614407	247614407	+	Missense_Mutation	SNP	G	G	A	rs12065526	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	123	120	0	1	0	G|0.854;A|0.146	0.146	strong	.	OR2B11	102	.	NM_001004492	exon1	c.C878T	p.T293I	GTGTAGGTGAAGG	.	PASS	Atlas-SNP
POLD3	10714	hgsc.bcm.edu	37	11	74347275	74347275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	60	151	0	0.368098	0	.	.	none	POLD3_ENST00000263681,NS,carcinoma,0,2	POLD3	87	2	NM_006591	exon11	c.C1153T	p.R385C	CGAAAACGCGTAC	.	PASS	Atlas-SNP
FOXR2	139628	hgsc.bcm.edu	37	X	55651001	55651001	+	Missense_Mutation	SNP	T	T	C	rs2375465	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	73	61	0	1	0	T|0.212;C|0.788	0.788	strong	.	FOXR2	42	.	NM_198451	exon1	c.T857C	p.V286A	CTCGTGTCTTAGC	.	PASS	Atlas-SNP
NKTR	4820	hgsc.bcm.edu	37	3	42679777	42679777	+	Missense_Mutation	SNP	T	T	G	rs33969824	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	52	101	0	0.464286	0	T|0.832;G|0.168	0.168	strong	.	NKTR	116	.	NM_005385	exon13	c.T2581G	p.L861V	AGAACTTTGAAAG	.	PASS	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	37	3	58118555	58118555	+	Missense_Mutation	SNP	G	G	A	rs12632456	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	54	82	0	0.514286	0	G|0.538;A|0.462	0.462	strong	.	FLNB	430	.	NM_001164317	exon27	c.G4504A	p.V1502M	GTGAACGTGGTGG	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52777502	52777502	+	Silent	SNP	A	A	G	rs1945297	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	66	178	0	0.44	0	A|0.586;G|0.414	0.414	strong	.	KRT84	61	.	NM_033045	exon2	c.T627C	p.N209N	CTCCAGATTGCTC	.	PASS	Atlas-SNP
CCDC11	220136	hgsc.bcm.edu	37	18	47788544	47788544	+	Silent	SNP	T	T	G	rs112087763	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	100	52	74	0	0.52	0	T|0.997;G|0.003	0.003	strong	.	CCDC11	59	.	NM_145020	exon2	c.A115C	p.R39R	GGATTCTTTCTAG	.	PASS	Atlas-SNP
ETV3L	440695	hgsc.bcm.edu	37	1	157062696	157062696	+	Silent	SNP	G	G	T	rs1176537	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	92	52	88	0	0.565217	0	G|0.720;T|0.280	0.280	strong	ETV3L_ENST00000454449,NS,adenoma,0,2	ETV3L	73	2	NM_001004341	exon5	c.C831A	p.L277L	CCCTGGGAGGCTC	.	PASS	Atlas-SNP
TMEM87A	25963	hgsc.bcm.edu	37	15	42565588	42565588	+	Silent	SNP	C	C	A	rs2277533	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	25	49	1	0.520833	0.0204082	C|0.876;A|0.124	0.124	strong	TMEM87A_ENST00000307216,NS,carcinoma,0,2	TMEM87A	56	2	NM_001110503	exon1	c.G9T	p.A3A	CGCAGCCGCCGCC	.	scavenged	Atlas-SNP
FRRS1	391059	hgsc.bcm.edu	37	1	100206374	100206374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	103	3	103	0	0.0291262	0	.	.	none	FRRS1,right_upper_lobe,carcinoma,0,1	FRRS1	50	1	NM_001013660	exon6	c.C551A	p.P184H	ACGGGAGGTAACG	.	scavenged	Atlas-SNP
MAVS	57506	hgsc.bcm.edu	37	20	3838441	3838441	+	Missense_Mutation	SNP	C	C	G	rs17857295	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	46	115	0	0.393162	0	C|0.764;G|0.236	0.236	strong	.	MAVS	34	.	NM_020746	exon3	c.C277G	p.Q93E	GTCTACCAGAGCT	.	PASS	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	37	11	4661568	4661568	+	Missense_Mutation	SNP	A	A	G	rs61746547	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	124	66	142	0	0.532258	0	A|0.938;G|0.062	0.062	strong	OR51D1,colon,carcinoma,-1,1	OR51D1	49	1	NM_001004751	exon1	c.A548G	p.Q183R	ACTGCCAAACACA	.	PASS	Atlas-SNP
ICAM5	7087	hgsc.bcm.edu	37	19	10404519	10404519	+	Silent	SNP	G	G	A	rs17852402	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	17	68	0	0.361702	0	G|0.891;A|0.109	0.109	strong	.	ICAM5	53	.	NM_003259	exon7	c.G1611A	p.E537E	CATCGAGGGGCTG	.	PASS	Atlas-SNP
ERCC6L2	375748	hgsc.bcm.edu	37	9	98638306	98638306	+	Missense_Mutation	SNP	C	C	T	rs56108623	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	53	29	62	0	0.54717	0	C|0.888;T|0.112	0.112	strong	C9orf102,NS,carcinoma,0,2	.	.	2	NM_001010895	exon1	c.C19T	p.P7S	TCGGCCCCTCCCC	.	PASS	Atlas-SNP
CREB3L3	84699	hgsc.bcm.edu	37	19	4159722	4159722	+	Silent	SNP	C	C	T	rs144868958	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	30	41	0	0.454545	0	C|0.998;T|0.002	0.002	strong	.	CREB3L3	53	.	NM_001271997	exon4	c.C519T	p.S173S	CCTGTCCCCACGA	.	PASS	Atlas-SNP
TUBG2	27175	hgsc.bcm.edu	37	17	40818699	40818699	+	Missense_Mutation	SNP	A	A	G	rs1046097	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	220	100	241	0	0.454545	0	A|0.531;G|0.469	0.469	strong	.	TUBG2	43	.	NM_016437	exon11	c.A1237G	p.M413V	GAGGACATGTTCA	.	PASS	Atlas-SNP
MS4A6A	64231	hgsc.bcm.edu	37	11	59945745	59945745	+	Silent	SNP	T	T	C	rs12453	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	131	167	0	0.992424	0	T|0.688;C|0.312	0.312	strong	MS4A6A_ENST00000529054,NS,carcinoma,0,3	MS4A6A	85	3	NM_001247999	exon5	c.A411G	p.L137L	CTTGGTTAACCTT	.	PASS	Atlas-SNP
SCPEP1	59342	hgsc.bcm.edu	37	17	55079471	55079471	+	Silent	SNP	T	T	C	rs12940187	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	59	119	0	0.487603	0	T|0.884;C|0.116	0.116	strong	.	SCPEP1	35	.	NM_021626	exon12	c.T1225C	p.L409L	AAATCTTTGGAAA	.	PASS	Atlas-SNP
MGAT1	4245	hgsc.bcm.edu	37	5	180218668	180218668	+	Missense_Mutation	SNP	A	A	G	rs634501	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	140	139	127	0	0.992857	0	A|0.273;G|0.727	0.727	strong	MGAT1,NS,carcinoma,0,1	MGAT1	48	1	NM_001114617	exon3	c.T1304C	p.L435P	CACGTCAGTGGGG	.	PASS	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	37	4	169348435	169348435	+	Silent	SNP	T	T	C	rs2712120	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	179	95	191	0	0.530726	0	T|0.783;C|0.217	0.217	strong	DDX60L,NS,carcinoma,0,1	DDX60L	116	1	NM_001012967	exon14	c.A1716G	p.K572K	TGACTTTTTCTTA	.	PASS	Atlas-SNP
SLMAP	7871	hgsc.bcm.edu	37	3	57882601	57882601	+	Silent	SNP	C	C	T	rs17058639	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	66	135	0	0.464789	0	C|0.740;T|0.260	0.260	strong	.	SLMAP	46	.	NM_007159	exon14	c.C1341T	p.D447D	TGTAGACGCCCAA	.	PASS	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	37	4	38776180	38776180	+	Silent	SNP	C	C	A	rs11096956	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	45	119	0	0.416667	0	C|0.732;A|0.268	0.268	strong	TLR10,NS,malignant_melanoma,-2,2	TLR10	87	2	NM_001017388	exon2	c.G1032T	p.P344P	ATAATTCGGGAAA	.	PASS	Atlas-SNP
HCN2	610	hgsc.bcm.edu	37	19	603634	603634	+	Silent	SNP	T	T	C	rs56131056	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	108	44	116	0	0.407407	0	T|0.856;C|0.144	0.144	strong	.	HCN2	36	.	NM_001194	exon2	c.T723C	p.T241T	GACCACTGCCCCG	.	PASS	Atlas-SNP
SIMC1	375484	hgsc.bcm.edu	37	5	175772208	175772208	+	Silent	SNP	C	C	T	rs17622467	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	68	110	0	0.527132	0	C|0.896;N|0.000	.	strong	.	.	.	.	NM_198567	exon9	c.C1134T	p.I378I	CGTGATCGACCGA	.	PASS	Atlas-SNP
ECM2	1842	hgsc.bcm.edu	37	9	95284873	95284873	+	Silent	SNP	A	A	G	rs9299405	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	53	89	0	0.5	0	A|0.691;G|0.309	0.309	strong	ECM2,NS,carcinoma,0,1	ECM2	147	1	NM_001393	exon2	c.T276C	p.S92S	ATTATAACTTGAT	.	PASS	Atlas-SNP
TEKT3	64518	hgsc.bcm.edu	37	17	15215660	15215660	+	Silent	SNP	T	T	C	rs2286516	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	191	189	183	0	0.989529	0	T|0.770;C|0.230	0.230	strong	.	TEKT3	64	.	NM_031898	exon7	c.A1017G	p.Q339Q	GTTGAATTGATTC	.	PASS	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	37	4	38774785	38774785	+	Silent	SNP	A	A	G	rs10776482	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	63	86	0	0.5625	0	A|0.739;G|0.261	0.261	strong	TLR10,colon,carcinoma,0,1	TLR10	87	1	NM_001017388	exon2	c.T2427C	p.D809D	TAGACAATCTGTT	.	PASS	Atlas-SNP
SCP2D1	140856	hgsc.bcm.edu	37	20	18794754	18794754	+	Missense_Mutation	SNP	C	C	T	rs1053839	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	119	67	116	0	0.563025	0	C|0.772;T|0.228	0.228	strong	.	.	.	.	NM_178483	exon1	c.C295T	p.P99S	CCGGGACCTGCCA	.	PASS	Atlas-SNP
RSC1A1	6248	hgsc.bcm.edu	37	1	15987602	15987602	+	Silent	SNP	A	A	G	rs35549389	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	36	62	0	0.5	0	A|0.979;G|0.021	0.021	strong	.	RSC1A1	29	.	NM_006511	exon1	c.A1239G	p.Q413Q	TCCACAAGTCTCC	.	PASS	Atlas-SNP
CCDC94	55702	hgsc.bcm.edu	37	19	4254375	4254375	+	Silent	SNP	C	C	T	rs11085068	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	41	120	0	0.394231	0	C|0.632;T|0.368	0.368	strong	CCDC94,NS,carcinoma,0,1	CCDC94	28	1	NM_018074	exon4	c.C294T	p.Y98Y	AGACTACACCATG	.	PASS	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	37	2	86259443	86259443	+	Silent	SNP	C	C	T	rs2276626	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	90	185	0	0.473684	0	T|0.595;C|0.405;A|0.000	0.595	strong	POLR1A,NS,carcinoma,0,1	POLR1A	137	1	NM_015425	exon29	c.G4224A	p.G1408G	GGCGTCCCCCTCC	.	PASS	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	37	17	12656111	12656111	+	Silent	SNP	T	T	C	rs12453883	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	35	81	0	0.364583	0	T|0.962;C|0.038	0.038	strong	.	MYOCD	291	.	NM_001146312	exon10	c.T1506C	p.N502N	CCTGAATGGGGGC	.	PASS	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	37	9	35957669	35957669	+	Missense_Mutation	SNP	T	T	C	rs2233564	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	53	76	0	0.509615	0	T|0.657;C|0.343	0.343	strong	.	OR2S2	46	.	NM_019897	exon1	c.A427G	p.M143V	TGGGCATGTAGGC	.	PASS	Atlas-SNP
SENP3	26168	hgsc.bcm.edu	37	17	7468277	7468277	+	Silent	SNP	C	C	T	rs35596387	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	51	24	58	0	0.470588	0	C|0.976;T|0.024	0.024	strong	.	SENP3	18	.	NM_015670	exon4	c.C957T	p.S319S	ACCAGGCATCTTG	.	PASS	Atlas-SNP
RFPL4A	342931	hgsc.bcm.edu	37	19	56274453	56274453	+	Missense_Mutation	SNP	G	G	A	rs75239380	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	229	32	204	0	0.139738	0	G|0.760;A|0.240	0.240	strong	ENSG00000188683,NS,carcinoma,0,1	RFPL4A	8	1	NM_001145014	exon3	c.G776A	p.G259E	AACGTGGAAGTCA	.	scavenged	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	37	17	39465094	39465094	+	Missense_Mutation	SNP	C	C	T	rs12453338	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	135	207	2	0.567227	0.00966184	C|0.771;T|0.229	0.229	strong	KRTAP16-1,NS,carcinoma,+2,1	KRTAP16-1	12	1	NM_001146182	exon1	c.G412A	p.V138I	CACAAACGGTGGC	.	scavenged	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414376	20414376	+	Silent	SNP	A	A	G	rs1761445	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	28	56	1	0.518519	0.0178571	A|0.906;G|0.094	0.094	strong	MLLT3,colon,carcinoma,0,3	MLLT3	125	3	NM_004529	exon5	c.T468C	p.S156S	GCTGCTACTGCTG	.	scavenged	Atlas-SNP
SPATA17	128153	hgsc.bcm.edu	37	1	217804767	217804767	+	Missense_Mutation	SNP	A	A	G	rs34652544	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	34	76	0	0.539683	0	A|0.968;G|0.032	0.032	strong	.	SPATA17	59	.	NM_138796	exon1	c.A47G	p.N16S	TAGGAAATCAGTA	.	PASS	Atlas-SNP
SATL1	340562	hgsc.bcm.edu	37	X	84363140	84363140	+	Missense_Mutation	SNP	A	A	G	rs10126146	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	305	304	303	0	0.996721	0	A|0.262;0|0.014	.	strong	.	SATL1	70	.	NM_001012980	exon1	c.T835C	p.W279R	CACTCCATTGGTT	.	PASS	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	37	6	170176647	170176647	+	Silent	SNP	C	C	T	rs4716399	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	68	30	69	0	0.441176	0	C|0.694;T|0.306	0.306	strong	.	C6orf70	63	.	NM_018341	exon16	c.C1617T	p.I539I	AAGCATCAGCGAA	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	37	6	168376869	168376869	+	Missense_Mutation	SNP	C	C	T	rs201374833	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	31	237	0	0.152709	0	.	.	weak	.	.	.	.	NM_001129895	exon1	c.G464A	p.G155E	TCATTCCCCCTGC	.	PASS	Atlas-SNP
OR5AU1	390445	hgsc.bcm.edu	37	14	21623648	21623648	+	Silent	SNP	G	G	A	rs7161544	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	98	86	0	1	0	G|0.567;A|0.433	0.433	strong	.	OR5AU1	46	.	NM_001004731	exon1	c.C537T	p.N179N	CAGGGGGTTACAA	.	PASS	Atlas-SNP
GPR35	2859	hgsc.bcm.edu	37	2	241569492	241569492	+	Silent	SNP	G	G	C	rs61734451	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	36	79	0	0.45	0	G|0.990;C|0.010	0.010	strong	.	GPR35	43	.	NM_001195382	exon6	c.G216C	p.A72A	CCTGGCGCTCTGG	.	PASS	Atlas-SNP
MC1R	4157	hgsc.bcm.edu	37	16	89986608	89986608	+	Silent	SNP	A	A	G	rs2228478	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	98	184	0	0.485149	0	A|0.821;G|0.179	0.179	strong	.	MC1R	20	.	NM_002386	exon1	c.A942G	p.T314T	GCTGACATGCTCC	.	PASS	Atlas-SNP
MFSD9	84804	hgsc.bcm.edu	37	2	103334969	103334969	+	Silent	SNP	G	G	A	rs1052431	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	49	110	0	0.418803	0	G|0.653;A|0.347	0.347	strong	.	MFSD9	56	.	NM_032718	exon6	c.C1335T	p.G445G	CACAGCGCCCAGG	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	37	21	47852085	47852085	+	Missense_Mutation	SNP	G	G	A	rs35147998	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	115	45	111	0	0.391304	0	G|0.943;C|0.000;A|0.056	0.056	strong	.	PCNT	283	.	NM_006031	exon38	c.G8707A	p.A2903T	CCAGCGGCTGCGG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1272754	1272754	+	Missense_Mutation	SNP	A	A	G	rs3021156	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	73	154	0	0.439759	0	A|0.924;G|0.076	0.076	strong	.	MUC5B	473	.	NM_002458	exon31	c.A14644G	p.T4882A	GTGACCACCATGG	.	PASS	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	37	1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	rs200464440	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	356	7	321	2	0.0196629	0.00623053	.	.	weak	NOTCH2_ENST00000369342,NS,carcinoma,0,2	NOTCH2	348	2	NM_001200001	exon4	c.A703T	p.T235S	GACAGGTGCCTCC	.	scavenged	Atlas-SNP
TFR2	7036	hgsc.bcm.edu	37	7	100226937	100226937	+	Silent	SNP	G	G	A	rs368298121		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	29	50	0	0.591837	0	.	.	weak	TFR2,NS,carcinoma,-1,1	TFR2	53	1	NM_003227	exon10	c.C1329T	p.S443S	CACAGCGGATTTA	.	PASS	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	37	10	127737930	127737930	+	Silent	SNP	G	G	A	rs2292692	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	121	49	117	0	0.404959	0	G|0.869;A|0.131	0.131	strong	.	ADAM12	388	.	NM_021641	exon16	c.C1818T	p.P606P	CTGCAGGGGGATG	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237778084	237778084	+	Missense_Mutation	SNP	G	G	A	rs3766871	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	99	42	110	0	0.424242	0	G|0.916;A|0.084	0.084	strong	RYR2,colon,carcinoma,-2,1	RYR2	1273	1	NM_001035	exon37	c.G5656A	p.G1886S	AAGGGGGGCAAGC	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44249199	44249199	+	Missense_Mutation	SNP	T	T	G	rs17585974	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	183	62	136	0	0.338798	0	T|0.893;G|0.107	0.107	strong	.	.	.	.	NM_001193466	exon2	c.A311C	p.K104T	GTCTGCTTGCTGA	.	PASS	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	37	12	8995756	8995756	+	Silent	SNP	A	A	G	rs7308106	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	42	21	53	0	0.5	0	A|0.939;G|0.061	0.061	strong	.	A2ML1	199	.	NM_144670	exon12	c.A1275G	p.V425V	CTTAGTATATAAT	.	PASS	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2266799	2266799	+	Missense_Mutation	SNP	G	G	A	rs745400	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	112	101	0	1	0	G|0.501;A|0.499	0.499	strong	.	SGSM2	60	.	NM_001098509	exon7	c.G713A	p.R238K	AGGACAGGCTGGC	.	PASS	Atlas-SNP
PRSS1	5644	hgsc.bcm.edu	37	7	142460313	142460313	+	Silent	SNP	T	T	C	rs6666	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	342	98	545	0	0.28655	0	T|0.437;C|0.563	0.563	strong	.	PRSS1	68	.	NM_002769	exon4	c.T486C	p.D162D	CCTGGATGCTCCT	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58978684	58978684	+	Missense_Mutation	SNP	G	G	A	rs7926933	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	56	27	68	0	0.482143	0	G|0.884;A|0.116	0.116	strong	.	MPEG1	72	.	NM_001039396	exon1	c.C1655T	p.P552L	AGAGACGGTGCCC	.	PASS	Atlas-SNP
TNN	63923	hgsc.bcm.edu	37	1	175049379	175049379	+	Missense_Mutation	SNP	G	G	A	rs16847812	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	36	92	0	0.45	0	G|0.872;A|0.128	0.128	strong	.	TNN	297	.	NM_022093	exon4	c.G865A	p.D289N	CAGGTGGATCACT	.	PASS	Atlas-SNP
UBQLNL	143630	hgsc.bcm.edu	37	11	5536415	5536415	+	Silent	SNP	C	C	T	rs10769023	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	206	102	219	1	0.495146	0.00456621	C|0.719;T|0.281	0.281	strong	.	UBQLNL	74	.	NM_145053	exon1	c.G1257A	p.E419E	GCTCTGCTCATCT	.	PASS	Atlas-SNP
TMEM63C	57156	hgsc.bcm.edu	37	14	77708804	77708804	+	Silent	SNP	C	C	T	rs61731611	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	125	125	112	1	1	0.00892857	C|0.813;T|0.187	0.187	strong	.	TMEM63C	77	.	NM_020431	exon14	c.C1179T	p.D393D	CAAAGACATTATT	.	PASS	Atlas-SNP
CAPN12	147968	hgsc.bcm.edu	37	19	39229075	39229075	+	Silent	SNP	C	C	T	rs201486563	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	41	16	41	0	0.390244	0	C|1.000;T|0.000	0.000	strong	.	CAPN12	43	.	NM_144691	exon7	c.G873A	p.T291T	GGCCCCCGTCCAC	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225533684	225533684	+	Missense_Mutation	SNP	A	A	G	rs6667999	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	44	113	0	0.411215	0	A|0.507;G|0.493	0.493	strong	.	DNAH14	300	.	NM_001373	exon68	c.A10420G	p.K3474E	GATGACAAAATTG	.	PASS	Atlas-SNP
HRASLS5	117245	hgsc.bcm.edu	37	11	63233710	63233710	+	Silent	SNP	A	A	G	rs2275999	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	238	129	211	0	0.542017	0	A|0.825;G|0.175	0.175	strong	.	HRASLS5	28	.	NM_001146728	exon5	c.T619C	p.L207L	CCGGCAAGGGCAG	.	PASS	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	37	5	109960989	109960989	+	Silent	SNP	A	A	G	rs61730920	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	269	125	281	0	0.464684	0	A|0.859;G|0.141	0.141	strong	.	TMEM232	57	.	NM_001039763	exon7	c.T747C	p.Y249Y	GTTCTCATATCTT	.	PASS	Atlas-SNP
KRT34	3885	hgsc.bcm.edu	37	17	39535388	39535388	+	Missense_Mutation	SNP	T	T	C	rs2071599	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	146	72	148	0	0.493151	0	T|0.874;C|0.126	0.126	strong	.	KRT34	71	.	NM_021013	exon6	c.A1043G	p.H348R	CTGTAGTGGGCCT	.	PASS	Atlas-SNP
GLRA3	8001	hgsc.bcm.edu	37	4	175688138	175688138	+	Silent	SNP	A	A	G	rs7696263	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	45	93	0	0.463918	0	A|0.226;G|0.774	0.774	strong	.	GLRA3	76	.	NM_001042543	exon3	c.T243C	p.F81F	AGAGCCAAAGCTG	.	PASS	Atlas-SNP
CDH12	1010	hgsc.bcm.edu	37	5	22078584	22078584	+	Missense_Mutation	SNP	C	C	T	rs4371716	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	182	98	169	1	0.538462	0.00591716	C|0.643;T|0.357	0.357	strong	CDH12,NS,carcinoma,+2,1	CDH12	238	1	NM_004061	exon5	c.G202A	p.V68M	AGCCCACGTATTC	.	scavenged	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	37	1	89847372	89847372	+	Missense_Mutation	SNP	G	G	T	rs4658359	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	162	158	0	1	0	G|0.211;T|0.789	0.789	strong	.	GBP6	87	.	NM_198460	exon7	c.G991T	p.A331S	AGGGCAGCTGACT	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104639519	104639519	+	Silent	SNP	C	C	G	rs61743517	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	36	32	0	0.972973	0	C|0.973;G|0.027	0.027	strong	.	KIF26A	84	.	NM_015656	exon8	c.C1626G	p.L542L	CAGCCTCCAGGAC	.	PASS	Atlas-SNP
ZFYVE1	53349	hgsc.bcm.edu	37	14	73459917	73459917	+	Silent	SNP	C	C	T	rs2333016	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	73	42	61	0	0.575342	0	C|0.689;T|0.311	0.311	strong	.	ZFYVE1	67	.	NM_021260	exon4	c.G1137A	p.E379E	TAGCTGCTCCAAA	.	PASS	Atlas-SNP
SPPL2C	162540	hgsc.bcm.edu	37	17	43923654	43923654	+	Missense_Mutation	SNP	G	G	C	rs12185233	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	107	108	0	1	0	G|0.509;C|0.491	0.491	strong	IMP5,NS,carcinoma,0,1	.	.	1	NM_175882	exon1	c.G1382C	p.R461P	GTTGCCGCTTTGA	.	PASS	Atlas-SNP
SLC30A5	64924	hgsc.bcm.edu	37	5	68419111	68419111	+	Silent	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	3	71	0	0.0384615	0	.	.	none	SLC30A5,upper_leg,malignant_melanoma,+2,1	SLC30A5	54	1	NM_022902	exon14	c.C1857T	p.F619F	ATGGTTCATCGCT	.	scavenged	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	37	17	7754993	7754993	+	Silent	SNP	G	G	A	rs12939056	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	55	40	0	1	0	A|0.324;C|0.000;G|0.675	0.324	strong	.	KDM6B	95	.	NM_001080424	exon17	c.G4044A	p.L1348L	GCTGCTGAAGCTG	.	PASS	Atlas-SNP
ZNF133	7692	hgsc.bcm.edu	37	20	18297193	18297193	+	Silent	SNP	T	T	C	rs1050476	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	45	90	0	0.46875	0	T|0.915;C|0.085	0.085	strong	.	ZNF133	63	.	NM_001083330	exon4	c.T1695C	p.I565I	TCTAATTACACAC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281534	152281534	+	Missense_Mutation	SNP	A	A	T	rs113544881	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	482	129	342	0	0.267635	0	A|0.949;T|0.051	0.051	strong	.	FLG	900	.	NM_002016	exon3	c.T5828A	p.L1943H	GATCCAAGATGGT	.	PASS	Atlas-SNP
LHX5	64211	hgsc.bcm.edu	37	12	113906140	113906140	+	Missense_Mutation	SNP	G	G	A	rs139906449	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	177	90	152	0	0.508475	0	G|0.989;A|0.011	0.011	strong	.	LHX5	39	.	NM_022363	exon3	c.C467T	p.T156M	TTGTCCGTCTCTT	.	PASS	Atlas-SNP
SEMG1	6406	hgsc.bcm.edu	37	20	43837278	43837278	+	Missense_Mutation	SNP	G	G	A	rs79500955	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	222	98	205	1	0.441441	0.00487805	G|0.996;A|0.004	0.004	strong	SEMG1,colon,carcinoma,+1,1	SEMG1	71	1	NM_003007	exon2	c.G1340A	p.R447H	GTGATCGTCATTT	.	scavenged	Atlas-SNP
NEIL3	55247	hgsc.bcm.edu	37	4	178256913	178256913	+	Missense_Mutation	SNP	C	C	G	rs7689099	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	236	115	263	0	0.487288	0	C|0.910;G|0.090	0.090	strong	.	NEIL3	89	.	NM_018248	exon3	c.C350G	p.P117R	CTTCTCCTGTTTT	.	PASS	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	37	17	39471888	39471888	+	Silent	SNP	C	C	T	rs34354631	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	60	26	39	0	0.433333	0	C|0.866;T|0.134	0.134	strong	.	KRTAP17-1	14	.	NM_031964	exon1	c.G15A	p.P5P	GTCCCCCGGGCAG	.	PASS	Atlas-SNP
GALNT9	50614	hgsc.bcm.edu	37	12	132862976	132862976	+	Silent	SNP	G	G	A	rs28503969	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	66	122	0	0.445946	0	G|0.670;A|0.330	0.330	strong	.	GALNT9	74	.	NM_001122636	exon2	c.C279T	p.G93G	GCCCAGGCCTCCT	.	PASS	Atlas-SNP
GZMA	3001	hgsc.bcm.edu	37	5	54404057	54404057	+	Silent	SNP	C	C	G	rs1051846	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	162	160	175	0	0.987654	0	C|0.828;G|0.172	0.172	strong	.	GZMA	60	.	NM_006144	exon4	c.C462G	p.G154G	GTGGGGCAGGACT	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179583496	179583496	+	Missense_Mutation	SNP	T	T	G	rs16866465	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	43	87	0	0.5375	0	T|0.778;G|0.222	0.222	strong	.	TTN	18412	.	NM_001267550	exon84	c.A24431C	p.E8144A	CCACTTTCTAATG	.	PASS	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	37	17	39619186	39619186	+	Missense_Mutation	SNP	G	G	C	rs2604956	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	57	105	0	0.548077	0	G|0.927;C|0.073	0.073	strong	KRT32,brain,glioma,0,2	KRT32	57	2	NM_002278	exon6	c.C1113G	p.D371E	CTCCAGGTCAGCC	.	PASS	Atlas-SNP
FTSJ3	117246	hgsc.bcm.edu	37	17	61901197	61901197	+	Missense_Mutation	SNP	T	T	A	rs2727288	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	167	166	209	1	0.994012	0.00478469	T|0.319;A|0.681	0.681	strong	.	FTSJ3	63	.	NM_017647	exon13	c.A1270T	p.S424C	TGGTGCTCAAGGA	.	PASS	Atlas-SNP
TEX12	56158	hgsc.bcm.edu	37	11	112040027	112040027	+	Silent	SNP	A	A	G	rs360712	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	161	66	157	1	0.409938	0.00636943	A|0.832;G|0.168	0.168	strong	TEX12,NS,carcinoma,+1,1	TEX12	14	1	NM_031275	exon2	c.A36G	p.R12R	TAATAGAAATTGC	.	scavenged	Atlas-SNP
INSL3	3640	hgsc.bcm.edu	37	19	17932190	17932190	+	Silent	SNP	T	T	C	rs1047233	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	11	4	15	0	0.363636	0	T|0.715;G|0.000;C|0.284;A|0.000	0.284	strong	INSL3,NS,carcinoma,0,1	INSL3	8	1	NM_005543	exon1	c.A126G	p.L42L	GCGCACTAGCGCG	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	37	19	2917857	2917857	+	Missense_Mutation	SNP	C	C	T	rs148390269	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	156	2	136	0	0.0128205	0	C|0.999;T|0.001	0.001	weak	ZNF57,NS,carcinoma,0,1	ZNF57	57	1	NM_173480	exon4	c.C1238T	p.T413M	TGAGGACGCACAC	.	scavenged	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	37	1	167849414	167849414	+	Silent	SNP	A	A	G	rs203849	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	74	162	0	0.427746	0	G|0.516;N|0.000	0.516	strong	ADCY10,NS,carcinoma,0,1	ADCY10	175	1	NM_018417	exon11	c.T1155C	p.G385G	GGCAACACCGATG	.	PASS	Atlas-SNP
DOK7	285489	hgsc.bcm.edu	37	4	3494956	3494956	+	Missense_Mutation	SNP	C	C	T	rs16844464	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	71	33	62	0	0.464789	0	C|0.935;T|0.065	0.065	strong	DOK7,NS,carcinoma,0,1	DOK7	44	1	NM_173660	exon7	c.C1243T	p.P415S	CTGGCTCCTAGAG	.	PASS	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	37	11	57982620	57982620	+	Missense_Mutation	SNP	A	A	G	rs1966834	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	281	139	325	0	0.494662	0	A|0.569;G|0.431	0.431	strong	.	OR1S1	139	.	NM_001004458	exon1	c.A404G	p.H135R	ATGACCACTTTGT	.	PASS	Atlas-SNP
GLRX3	10539	hgsc.bcm.edu	37	10	131959150	131959150	+	Missense_Mutation	SNP	C	C	T	rs2274217	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	63	28	84	0	0.444444	0	C|0.799;T|0.201	0.201	strong	TXNL2,colon,carcinoma,0,2	GLRX3	39	2	NM_006541	exon4	c.C367T	p.P123S	TTCCTACCCAGCG	.	PASS	Atlas-SNP
OGDHL	55753	hgsc.bcm.edu	37	10	50944529	50944529	+	Silent	SNP	G	G	A	rs12357255	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	66	47	0	1	0	G|0.972;A|0.028	0.028	strong	.	OGDHL	149	.	NM_018245	exon21	c.C2628T	p.A876A	TGCTGCGGCCCCA	.	PASS	Atlas-SNP
SP140L	93349	hgsc.bcm.edu	37	2	231256814	231256814	+	Missense_Mutation	SNP	A	A	G	rs183267141	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	155	78	150	0	0.503226	0	A|0.997;G|0.003	0.003	strong	.	SP140L	68	.	NM_138402	exon12	c.A977G	p.K326R	TGGCAAAGTGTAT	.	PASS	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	37	17	43552537	43552537	+	Silent	SNP	G	G	A	rs71238846	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	170	149	0	0.965909	0	G|0.865;A|0.135	0.135	strong	.	PLEKHM1	69	.	NM_014798	exon4	c.C852T	p.C284C	CTCCTCGCAATGG	.	PASS	Atlas-SNP
ZNF8	7554	hgsc.bcm.edu	37	19	58806686	58806686	+	Silent	SNP	A	A	G	rs17853924	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	89	43	85	0	0.483146	0	A|0.946;G|0.054	0.054	strong	.	ZNF8	60	.	NM_021089	exon4	c.A1512G	p.Q504Q	TGAACAATCCTCG	.	PASS	Atlas-SNP
SGOL1	151648	hgsc.bcm.edu	37	3	20216519	20216519	+	Silent	SNP	T	T	A	rs61729306	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	106	215	0	0.490741	0	T|0.811;A|0.189	0.189	strong	.	SGOL1	55	.	NM_001199253	exon6	c.A504T	p.T168T	TCCCAGTGTGTCT	.	PASS	Atlas-SNP
SPRY2	10253	hgsc.bcm.edu	37	13	80911525	80911525	+	Missense_Mutation	SNP	G	G	A	rs504122	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	50	90	0	0.510204	0	G|0.726;N|0.000	.	strong	.	SPRY2	28	.	NM_005842	exon2	c.C316T	p.P106S	ACAGAGGGGCTCG	.	PASS	Atlas-SNP
SLK	9748	hgsc.bcm.edu	37	10	105758670	105758670	+	Silent	SNP	A	A	G	rs10883960	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	180	82	199	0	0.455556	0	A|0.817;G|0.183	0.183	strong	.	SLK	107	.	NM_014720	exon5	c.A528G	p.V176V	TGGAGTATCAGCT	.	PASS	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	37	6	43152366	43152366	+	Silent	SNP	C	C	A	rs41274928	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	84	154	0	0.454054	0	C|0.948;A|0.052	0.052	strong	.	CUL9	248	.	NM_015089	exon2	c.C318A	p.G106G	AGGAGGCCTGGAT	.	PASS	Atlas-SNP
OR1M1	125963	hgsc.bcm.edu	37	19	9203994	9203994	+	Missense_Mutation	SNP	C	C	T	rs61738474	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	185	75	178	0	0.405405	0	C|0.987;T|0.013	0.013	strong	OR1M1,NS,carcinoma,0,1	OR1M1	52	1	NM_001004456	exon1	c.C74T	p.T25M	AGGAGACGCTTCT	.	PASS	Atlas-SNP
PNPO	55163	hgsc.bcm.edu	37	17	46022065	46022065	+	Missense_Mutation	SNP	G	G	A	rs17679445	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	74	43	86	0	0.581081	0	G|0.956;A|0.044	0.044	strong	.	PNPO	18	.	NM_018129	exon3	c.G347A	p.R116Q	AGAGTCGAAAAGG	.	PASS	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	37	2	166535883	166535883	+	Missense_Mutation	SNP	G	G	C	rs61738743	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	76	92	0	1	0	G|0.957;C|0.043	0.043	strong	.	CSRNP3	73	.	NM_001172173	exon7	c.G1378C	p.V460L	GACACTGTCAAAA	.	PASS	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56088789	56088789	+	Silent	SNP	G	G	A	rs199851385	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	158	25	150	0	0.158228	0	G|0.750;A|0.250	0.250	strong	.	PSPH	23	.	NM_004577	exon4	c.C117T	p.G39G	CTCAACGCCACAG	.	PASS	Atlas-SNP
ATL2	64225	hgsc.bcm.edu	37	2	38536626	38536626	+	Silent	SNP	T	T	G	rs2305243	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	17	43	0	0.472222	0	T|0.679;G|0.321	0.321	strong	ATL2,NS,carcinoma,0,1	ATL2	49	1	NM_001135673	exon9	c.A966C	p.R322R	AAGCTCTCGTTTA	.	PASS	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	37	16	49671177	49671177	+	Missense_Mutation	SNP	T	T	C	rs34214571	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	163	71	165	0	0.435583	0	T|0.972;C|0.028	0.028	strong	.	ZNF423	463	.	NM_015069	exon4	c.A1886G	p.N629S	TCCCCATTGGAGA	.	PASS	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	37	10	69909802	69909802	+	Silent	SNP	G	G	A	rs10997948	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	40	77	0	0.470588	0	G|0.903;A|0.097	0.097	strong	.	MYPN	189	.	NM_032578	exon6	c.G1251A	p.Q417Q	GTGTCAGAGCCCC	.	PASS	Atlas-SNP
TBC1D14	57533	hgsc.bcm.edu	37	4	6925237	6925237	+	Missense_Mutation	SNP	C	C	G	rs34860182	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	118	107	0	1	0	C|0.919;G|0.081	0.081	strong	.	TBC1D14	110	.	NM_001113361	exon2	c.C121G	p.L41V	CGACTCCTCTCCG	.	PASS	Atlas-SNP
ANKRD33	341405	hgsc.bcm.edu	37	12	52284668	52284668	+	Missense_Mutation	SNP	C	C	A	rs12368048	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	61	30	70	0	0.491803	0	A|0.176;C|0.824;G|0.000	0.176	strong	.	ANKRD33	33	.	NM_182608	exon5	c.C938A	p.T313N	CCACAACCAGCCT	.	PASS	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	37	11	124764176	124764176	+	Silent	SNP	T	T	C	rs11820142	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	55	100	0	0.5	0	T|0.971;C|0.029	0.029	strong	.	ROBO4	130	.	NM_019055	exon8	c.A1239G	p.P413P	GGAGCCTGGCATA	.	PASS	Atlas-SNP
C20orf85	128602	hgsc.bcm.edu	37	20	56728608	56728608	+	Missense_Mutation	SNP	G	G	A	rs16984945	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	2	156	0	0.015748	0	G|0.992;A|0.008	0.008	strong	C20orf85,NS,carcinoma,+1,3	C20orf85	35	3	NM_178456	exon2	c.G77A	p.R26H	AATACCGTCTGAA	.	scavenged	Atlas-SNP
STON1	11037	hgsc.bcm.edu	37	2	48807976	48807976	+	Silent	SNP	T	T	C	rs3828340	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	86	140	0	0.52439	0	T|0.674;C|0.326	0.326	strong	.	STON1	100	.	NM_001198595	exon3	c.T204C	p.D68D	TGTAGATTTTTAT	.	PASS	Atlas-SNP
RBBP8NL	140893	hgsc.bcm.edu	37	20	60987737	60987737	+	Missense_Mutation	SNP	C	C	T	rs6089366	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	29	37	0	0.630435	0	C|0.890;T|0.110	0.110	strong	.	.	.	.	NM_080833	exon13	c.G1819A	p.E607K	CGTGCTCCTGGGT	.	PASS	Atlas-SNP
VDR	7421	hgsc.bcm.edu	37	12	48238757	48238757	+	Silent	SNP	A	A	G	rs731236	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	150	78	147	1	0.52	0.00680272	A|0.692;G|0.308	0.308	strong	VDR,NS,carcinoma,0,1	VDR	47	1	NM_001017536	exon10	c.T1206C	p.I402I	GGCCTCAATCAGC	.	scavenged	Atlas-SNP
CEACAM18	729767	hgsc.bcm.edu	37	19	51984656	51984656	+	Missense_Mutation	SNP	G	G	A	rs62115071	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	32	80	0	0.344086	0	G|0.862;A|0.138	0.138	strong	.	CEACAM18	96	.	NM_001080405	exon4	c.G593A	p.S198N	TGGGAAGCAATCT	.	PASS	Atlas-SNP
TRAF1	7185	hgsc.bcm.edu	37	9	123688217	123688217	+	Missense_Mutation	SNP	G	G	A	rs34119250	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	213	108	163	0	0.507042	0	G|0.955;A|0.045	0.045	strong	.	TRAF1	42	.	NM_005658	exon2	c.C137T	p.P46L	CACCTCGGGTTCT	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6652618	6652618	+	Silent	SNP	C	C	T	rs2659871	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	57	137	0	0.398601	0	C|0.532;T|0.468	0.468	strong	DCHS1,colon,carcinoma,0,1	DCHS1	277	1	NM_003737	exon8	c.G3696A	p.P1232P	TGTTCCCGGAGGC	.	PASS	Atlas-SNP
THSD4	79875	hgsc.bcm.edu	37	15	72040774	72040774	+	Silent	SNP	C	C	T	rs1872056	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	147	71	157	0	0.482993	0	C|0.782;T|0.218	0.218	strong	.	THSD4	75	.	NM_024817	exon13	c.C2256T	p.C752C	GCCCTGCGGCGTG	.	PASS	Atlas-SNP
LRRC37A2	474170	hgsc.bcm.edu	37	17	44626347	44626347	+	Missense_Mutation	SNP	T	T	C	rs62073349	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	259	170	78	0	0.656371	0	.	.	weak	.	LRRC37A2	37	.	NM_001006607	exon9	c.T3842C	p.I1281T	TTTCCATTTTAGA	.	PASS	Atlas-SNP
TECPR1	25851	hgsc.bcm.edu	37	7	97863145	97863145	+	Silent	SNP	G	G	A	rs2291750	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	84	189	0	0.567568	0	G|0.724;A|0.276	0.276	strong	.	TECPR1	77	.	NM_015395	exon11	c.C1260T	p.V420V	TCTCTCGACTTCC	.	PASS	Atlas-SNP
FTSJD1	55783	hgsc.bcm.edu	37	16	71317545	71317545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	166	74	172	0	0.445783	0	.	.	none	.	FTSJD1	70	.	NM_018348	exon3	c.A2279G	p.E760G	ATTTCTTCTCTCT	.	PASS	Atlas-SNP
CFLAR	8837	hgsc.bcm.edu	37	2	202025621	202025621	+	Silent	SNP	A	A	G	rs1594	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	35	96	0	0.357143	0	A|0.549;G|0.451	0.451	strong	.	CFLAR	37	.	NM_003879	exon9	c.A1260G	p.P420P	CTCACCATCCCTG	.	PASS	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	37	8	87229948	87229948	+	Silent	SNP	T	T	A	rs4621787	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	72	25	66	0	0.347222	0	A|0.126;G|0.000;T|0.873	0.126	strong	.	SLC7A13	97	.	NM_138817	exon3	c.A930T	p.S310S	TCTCGATGATTTA	.	PASS	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79300993	79300993	+	Missense_Mutation	SNP	G	G	A	rs12512164	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	133	73	111	0	0.548872	0	G|0.776;A|0.224	0.224	strong	FRAS1_ENST00000325942,NS,carcinoma,0,3	FRAS1	779	3	NM_001166133	exon27	c.G3406A	p.E1136K	AGGGTCGAAGATC	.	PASS	Atlas-SNP
ZDHHC11	79844	hgsc.bcm.edu	37	5	843815	843815	+	Silent	SNP	C	C	T	rs71591190	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	399	98	265	0	0.245614	0	C|0.856;T|0.144	0.144	strong	ZDHHC11_ENST00000424784,rectum,carcinoma,0,2	ZDHHC11	97	2	NM_024786	exon4	c.G528A	p.S176S	TGTGGCCGAGGCC	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1264767	1264767	+	Silent	SNP	G	G	A	rs74447707	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	404	26	235	0	0.0643564	0	.	.	weak	MUC5B,NS,neuroblastoma,0,2	MUC5B	473	2	NM_002458	exon31	c.G6657A	p.S2219S	CACCTCGGGCATC	.	scavenged	Atlas-SNP
BANP	54971	hgsc.bcm.edu	37	16	88052146	88052146	+	Silent	SNP	C	C	T	rs17850504	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	94	49	108	0	0.521277	0	C|0.922;T|0.078	0.078	strong	.	BANP	67	.	NM_001173542	exon7	c.C768T	p.A256A	CACGGCCGAGAAG	.	PASS	Atlas-SNP
PPP1R1C	151242	hgsc.bcm.edu	37	2	182981968	182981968	+	Silent	SNP	A	A	G	rs1882212	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	289	289	303	0	1	0	A|0.704;G|0.296	0.296	strong	.	PPP1R1C	14	.	NM_001261424	exon5	c.A297G	p.A99A	ATCAGCATTCCCT	.	PASS	Atlas-SNP
UPK3BL	100134938	hgsc.bcm.edu	37	7	102279601	102279601	+	Silent	SNP	G	G	T	rs79054498		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	460	26	760	0	0.0565217	0	G|0.500;T|0.500	0.500	weak	UPK3BL,NS,carcinoma,0,2	UPK3BL	6	2	NM_001114403	exon4	c.C531A	p.T177T	CCACTTGGTTTCA	.	scavenged	Atlas-SNP
LILRA6	79168	hgsc.bcm.edu	37	19	54744387	54744387	+	Missense_Mutation	SNP	C	C	T	rs71263238	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	168	126	210	0	0.75	0	C|0.659;T|0.341	0.341	strong	.	LILRA6	75	.	NM_024318	exon6	c.G1021A	p.V341M	GGGTCACGTTCTC	.	PASS	Atlas-SNP
PNPLA5	150379	hgsc.bcm.edu	37	22	44287062	44287062	+	Silent	SNP	A	A	G	rs2071884	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	197	99	148	0	0.502538	0	A|0.657;G|0.343	0.343	strong	PNPLA5,NS,carcinoma,0,3	PNPLA5	46	3	NM_138814	exon2	c.T306C	p.D102D	CAGAGCATCCTGC	.	PASS	Atlas-SNP
SCFD2	152579	hgsc.bcm.edu	37	4	54011526	54011526	+	Missense_Mutation	SNP	A	A	G	rs7675987	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	189	76	185	0	0.402116	0	A|0.710;G|0.290	0.290	strong	.	SCFD2	78	.	NM_152540	exon5	c.T1535C	p.L512S	GGTGACAATCCAG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9049149	9049149	+	Missense_Mutation	SNP	G	G	A	rs12461007	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	169	92	171	0	0.544379	0	G|0.783;A|0.217	0.217	strong	.	MUC16	4315	.	NM_024690	exon5	c.C32482T	p.P10828S	GTGCAGGATGCGT	.	PASS	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152327667	152327667	+	Silent	SNP	C	C	T	rs12738471	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	106	11	182	1	0.103774	0.00549451	C|0.500;T|0.500	0.500	strong	FLG2,rectum,carcinoma,0,2	FLG2	431	2	NM_001014342	exon3	c.G2595A	p.S865S	CTGTCCCGAACTT	.	scavenged	Atlas-SNP
TLL2	7093	hgsc.bcm.edu	37	10	98133483	98133483	+	Silent	SNP	G	G	A	rs61741039	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	47	20	38	0	0.425532	0	G|0.865;A|0.135	0.135	strong	.	TLL2	122	.	NM_012465	exon19	c.C2532T	p.A844A	AATGGGGGCCAGG	.	PASS	Atlas-SNP
YWHAG	7532	hgsc.bcm.edu	37	7	75959188	75959188	+	Silent	SNP	G	G	A	rs2072435	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	63	139	0	0.456522	0	G|0.697;A|0.303	0.303	strong	.	YWHAG	24	.	NM_012479	exon2	c.C450T	p.S150S	CTTCTCGGAGGAC	.	PASS	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	37	1	171083242	171083242	+	Missense_Mutation	SNP	A	A	G	rs2266780	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	215	104	195	0	0.483721	0	A|0.877;G|0.123	0.123	strong	.	FMO3	73	.	NM_006894	exon7	c.A923G	p.E308G	TCACAGAGACCTC	.	PASS	Atlas-SNP
PZP	5858	hgsc.bcm.edu	37	12	9312951	9312951	+	Missense_Mutation	SNP	G	G	A	rs57006764	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	116	48	124	0	0.413793	0	G|0.805;A|0.195	0.195	strong	PZP_ENST00000381997,NS,carcinoma,+1,2	PZP	422	2	NM_002864	exon24	c.C3008T	p.T1003M	TCCTGCGTCAGCT	.	PASS	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	37	11	56468440	56468440	+	Missense_Mutation	SNP	G	G	T	rs12421330	bycluster;byfrequency;byhapmap	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	29	216	0	0.143564	0	G|0.625;T|0.375	0.375	strong	.	.	.	.	NM_001013358	exon1	c.G577T	p.G193C	AAGGGCGGCTATA	.	PASS	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	37	5	70858342	70858342	+	Missense_Mutation	SNP	A	A	G	rs115185087	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	41	113	0	0.431579	0	A|0.956;G|0.044	0.044	strong	.	BDP1	204	.	NM_018429	exon38	c.A7738G	p.T2580A	TCAGCAACTCAGG	.	PASS	Atlas-SNP
C19orf45	374877	hgsc.bcm.edu	37	19	7573301	7573301	+	Silent	SNP	C	C	T	rs3087602		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	84	83	127	1	0.988095	0.00787402	.	.	weak	.	C19orf45	36	.	NM_198534	exon9	c.C1503T	p.C501C	CCTGTGCCCCAGC	.	PASS	Atlas-SNP
ZNF544	27300	hgsc.bcm.edu	37	19	58772579	58772579	+	Missense_Mutation	SNP	C	C	G	rs6510130	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	71	132	0	0.461039	0	C|0.935;G|0.065	0.065	strong	.	ZNF544	57	.	NM_014480	exon7	c.C607G	p.H203D	ATTAATCATGAGA	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1081141	1081141	+	Silent	SNP	C	C	T	rs41375149	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	105	50	104	0	0.47619	0	C|0.939;T|0.061	0.061	strong	.	MUC2	614	.	NM_002457	exon11	c.C1437T	p.T479T	CGTGACCGGTGAG	.	PASS	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	37	8	144810322	144810322	+	Missense_Mutation	SNP	G	G	A	rs28573699	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	43	22	33	0	0.511628	0	G|0.940;A|0.060	0.060	strong	.	FAM83H	68	.	NM_198488	exon5	c.C1309T	p.H437Y	CGCCGTGGCTGAG	.	PASS	Atlas-SNP
GSTT2	2953	hgsc.bcm.edu	37	22	24325062	24325062	+	Missense_Mutation	SNP	G	G	A	rs78284383	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	728	333	522	0	0.457418	0	G|0.850;A|0.151	0.151	strong	.	GSTT2	3	.	NM_000854	exon4	c.G352A	p.V118M	CATCAGGTGTTGG	.	PASS	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30955010	30955010	+	Missense_Mutation	SNP	C	C	T	rs41288689	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	111	111	0	0.840909	0	C|0.898;T|0.102	0.102	strong	.	MUC21	98	.	NM_001010909	exon2	c.C1058T	p.T353I	GCACAACCTCCAG	.	PASS	Atlas-SNP
WDR49	151790	hgsc.bcm.edu	37	3	167217971	167217971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	24	66	0	0.489796	0	.	.	none	.	WDR49	188	.	NM_178824	exon14	c.C1945A	p.Q649K	GAATTTGGGGACG	.	PASS	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	37	7	31682853	31682853	+	Silent	SNP	T	T	C	rs38397	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	52	29	46	0	0.557692	0	T|0.862;C|0.138	0.138	strong	LOC223075,caecum,carcinoma,+1,2	CCDC129	127	2	NM_001257968	exon11	c.T1947C	p.S649S	AAGCAGTGGATTC	.	PASS	Atlas-SNP
POLR2H	5437	hgsc.bcm.edu	37	3	184082931	184082931	+	Silent	SNP	T	T	C	rs11556518	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	193	90	231	0	0.466321	0	T|0.918;C|0.082	0.082	strong	.	POLR2H	17	.	NM_006232	exon3	c.T168C	p.F56F	CAAGTTTCGGTTG	.	PASS	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	37	19	1004823	1004823	+	Silent	SNP	G	G	A	rs4806908	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	37	19	40	0	0.513514	0	G|0.697;A|0.303	0.303	strong	.	GRIN3B	46	.	NM_138690	exon3	c.G1323A	p.A441A	CCCAGCGGGGCAG	.	PASS	Atlas-SNP
RASSF1	11186	hgsc.bcm.edu	37	3	50369546	50369546	+	Missense_Mutation	SNP	C	C	A	rs2073498	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	97	35	93	0	0.360825	0	C|0.925;A|0.075	0.075	strong	.	RASSF1	46	.	NM_170714	exon3	c.G409T	p.A137S	TCTCAGCTTGAGA	.	PASS	Atlas-SNP
SLC5A9	200010	hgsc.bcm.edu	37	1	48708250	48708250	+	Missense_Mutation	SNP	C	C	T	rs78427303	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	123	72	138	0	0.585366	0	C|0.939;T|0.061	0.061	strong	.	SLC5A9	82	.	NM_001135181	exon14	c.C1874T	p.A625V	GTGGAGCGGCAGA	.	PASS	Atlas-SNP
ZCCHC16	340595	hgsc.bcm.edu	37	X	111698613	111698613	+	Silent	SNP	T	T	C	rs7053563	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	54	53	56	0	0.981481	0	T|0.694;C|0.306	0.306	strong	.	ZCCHC16	66	.	NM_001004308	exon3	c.T657C	p.H219H	GAAACATAGTGAC	.	PASS	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254142	39254142	+	Silent	SNP	A	A	G	rs375280428		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	58	20	65	1	0.344828	0.0153846	.	.	weak	KRTAP4-8,rectum,carcinoma,0,2	KRTAP4-8	57	2	NM_031960	exon1	c.T195C	p.C65C	GGGGCGACAGCAG	.	scavenged	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	37	14	89042232	89042232	+	Silent	SNP	G	G	A	rs147484262	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	76	40	82	0	0.526316	0	G|1.000;A|0.000	0.000	strong	.	ZC3H14	71	.	NM_001160104	exon8	c.G1071A	p.K357K	TTTGAAGGCTATA	.	PASS	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	37	12	5674754	5674754	+	Silent	SNP	G	G	A	rs2277398	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	86	62	0	0.988506	0	G|0.645;A|0.355	0.355	strong	.	ANO2	309	.	NM_020373	exon25	c.C2697T	p.S899S	ACGGGCGGACAGA	.	PASS	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	37	2	225244888	225244888	+	Missense_Mutation	SNP	A	A	G	rs3738954	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	65	65	70	0	1	0	A|0.830;G|0.170	0.170	strong	.	FAM124B	71	.	NM_001122779	exon2	c.T770C	p.I257T	CCCAAGATGCCAT	.	PASS	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	37	10	105793750	105793750	+	Missense_Mutation	SNP	T	T	C	rs17116350	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	216	116	236	1	0.537037	0.00423729	C|0.269;N|0.000	0.269	strong	COL17A1,colon,carcinoma,0,1	COL17A1	149	1	NM_000494	exon52	c.A4109G	p.D1370G	TCCAGATCTCCAG	.	PASS	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144994028	144994028	+	Missense_Mutation	SNP	C	C	T	rs34132016	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	70	38	71	0	0.542857	0	C|0.994;T|0.006	0.006	strong	.	PLEC	1144	.	NM_201380	exon32	c.G10372A	p.G3458R	GGACCCCGGAAGC	.	PASS	Atlas-SNP
STAG1	10274	hgsc.bcm.edu	37	3	136062724	136062724	+	Missense_Mutation	SNP	C	C	G	rs34149860	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	164	73	155	0	0.445122	0	C|0.914;G|0.086	0.086	strong	.	STAG1	135	.	NM_005862	exon30	c.G3396C	p.Q1132H	TTGAATCTGGTCT	.	PASS	Atlas-SNP
CYP2C8	1558	hgsc.bcm.edu	37	10	96818119	96818119	+	Missense_Mutation	SNP	G	G	C	rs56489507		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	134	66	114	0	0.492537	0	.	.	weak	.	CYP2C8	73	.	NM_000770	exon5	c.C792G	p.I264M	GCAATCGATAAAG	.	PASS	Atlas-SNP
MRGPRX4	117196	hgsc.bcm.edu	37	11	18195348	18195348	+	Missense_Mutation	SNP	C	C	T	rs11024532	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	118	118	0	1	0	C|0.817;T|0.183	0.183	strong	.	MRGPRX4	68	.	NM_054032	exon1	c.C545T	p.A182V	CAGTCGCGTGGCT	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179427186	179427186	+	Silent	SNP	A	A	G	rs2366751	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	71	151	0	0.47973	0	A|0.562;G|0.438	0.438	strong	.	TTN	18412	.	NM_001267550	exon326	c.T83673C	p.G27891G	GCTGCCACCATCA	.	PASS	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101593597	101593597	+	Silent	SNP	C	C	T	rs41418955	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	21	12	20	0	0.571429	0	C|0.993;T|0.007	0.007	strong	.	LRRK1	310	.	NM_024652	exon26	c.C4026T	p.L1342L	CAGCCTCAACACC	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	37	16	24788645	24788645	+	Missense_Mutation	SNP	T	T	A	rs11639856	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	13	48	0	0.333333	0	T|0.853;A|0.147	0.147	strong	.	TNRC6A	171	.	NM_014494	exon5	c.T555A	p.N185K	ACAAAATAACGGA	.	PASS	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	37	2	203922075	203922075	+	Silent	SNP	A	A	G	rs146121994	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	49	28	53	0	0.571429	0	A|0.997;G|0.003	0.003	strong	.	NBEAL1	266	.	NM_001114132	exon6	c.A414G	p.E138E	GAAGGAAATGGCA	.	PASS	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103397387	103397387	+	Missense_Mutation	SNP	T	T	G	rs7339187	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	56	111	0	0.504505	0	T|0.916;G|0.084	0.084	strong	.	.	.	.	NM_001146197	exon4	c.A5660C	p.Q1887P	CCATTTTGGGTCT	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123782299	123782299	+	Silent	SNP	G	G	A	rs2230214	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	143	55	131	0	0.384615	0	G|0.895;A|0.105	0.105	strong	.	C5	124	.	NM_001735	exon12	c.C1461T	p.T487T	TTTGGGGGTAACA	.	PASS	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	37	6	170176648	170176648	+	Missense_Mutation	SNP	A	A	G	rs4716346	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	30	70	0	0.434783	0	A|0.706;G|0.294	0.294	strong	.	C6orf70	63	.	NM_018341	exon16	c.A1618G	p.S540G	AGCATCAGCGAAC	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123860689	123860689	+	Missense_Mutation	SNP	C	C	T	rs10818504	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	37	100	0	0.45679	0	C|0.626;T|0.374	0.374	strong	.	CNTRL	161	.	NM_007018	exon5	c.C647T	p.P216L	TGAAACCGCTTCA	.	PASS	Atlas-SNP
C1RL	51279	hgsc.bcm.edu	37	12	7254669	7254669	+	Silent	SNP	A	A	C	rs3742088	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	48	23	47	0	0.479167	0	A|0.904;C|0.096	0.096	strong	.	C1RL	39	.	NM_016546	exon3	c.T315G	p.G105G	ATCCGAACCGACG	.	PASS	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	37	6	44141088	44141088	+	Missense_Mutation	SNP	G	G	A	rs6938938	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	45	45	35	0	1	0	G|0.864;A|0.136	0.136	strong	.	CAPN11	66	.	NM_007058	exon7	c.G796A	p.V266M	AAGGCCGTGGAGC	.	PASS	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	37	3	122646734	122646734	+	Silent	SNP	C	C	T	rs2276775	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	52	97	0	0.477064	0	C|0.906;T|0.094	0.094	strong	.	SEMA5B	303	.	NM_001256347	exon8	c.G915A	p.T305T	GATGACCGTGGCT	.	PASS	Atlas-SNP
C6orf201	404220	hgsc.bcm.edu	37	6	4122249	4122249	+	Missense_Mutation	SNP	C	C	A	rs643232	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	207	92	217	0	0.444444	0	C|0.679;A|0.321	0.321	strong	.	C6orf201	17	.	NM_001085401	exon4	c.C351A	p.N117K	GAGAAACCTGCCA	.	PASS	Atlas-SNP
OR9Q2	219957	hgsc.bcm.edu	37	11	57958497	57958497	+	Missense_Mutation	SNP	T	T	C	rs34337292	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	366	190	341	0	0.519126	0	T|0.754;C|0.246	0.246	strong	OR9Q2,NS,carcinoma,-1,1	OR9Q2	78	1	NM_001005283	exon1	c.T535C	p.C179R	ATTTTCTGTGACC	.	PASS	Atlas-SNP
FANCL	55120	hgsc.bcm.edu	37	2	58388696	58388696	+	Silent	SNP	A	A	G	rs848291	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	186	89	167	0	0.478495	0	A|0.313;G|0.687	0.687	strong	.	FANCL	35	.	NM_001114636	exon12	c.T996C	p.S332S	ACACTGAGAATTA	.	PASS	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	37	2	160035195	160035195	+	Silent	SNP	C	C	T	rs12988603	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	190	100	163	0	0.526316	0	C|0.763;T|0.237	0.237	strong	.	TANC1	157	.	NM_033394	exon14	c.C2031T	p.N677N	CAGCAACATCTCC	.	PASS	Atlas-SNP
SLC25A41	284427	hgsc.bcm.edu	37	19	6430106	6430106	+	Missense_Mutation	SNP	C	C	T	rs34488963	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	77	51	79	0	0.662338	0	C|0.911;T|0.089	0.089	strong	SLC25A41,NS,carcinoma,0,1	SLC25A41	26	1	NM_173637	exon3	c.G430A	p.G144S	GGAAGCCGCCCTC	.	PASS	Atlas-SNP
KIAA1804	0	hgsc.bcm.edu	37	1	233515413	233515413	+	Silent	SNP	G	G	A	rs1402815	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	55	24	57	0	0.436364	0	G|0.748;A|0.252	0.252	strong	.	KIAA1804	129	.	NM_032435	exon9	c.G2661A	p.P887P	TAGACCGTCACAT	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16919052	16919052	+	Missense_Mutation	SNP	T	T	C	rs1801239	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	51	84	0	0.56044	0	T|0.930;C|0.070	0.070	strong	.	CUBN	515	.	NM_001081	exon57	c.A8950G	p.I2984V	TGATAATGTGCAC	.	PASS	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	37	4	3446132	3446132	+	Missense_Mutation	SNP	C	C	G	rs1987546	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	36	36	41	0	1	0	C|0.293;G|0.707	0.707	strong	.	HGFAC	69	.	NM_001528	exon6	c.C693G	p.F231L	GTGCTTCGGGGGC	.	PASS	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	37	19	10132290	10132290	+	Silent	SNP	C	C	T	rs747574	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	109	47	92	0	0.431193	0	C|0.835;T|0.165	0.165	strong	.	RDH8	51	.	NM_015725	exon6	c.C861T	p.L287L	CACGCTCAAAACC	.	PASS	Atlas-SNP
PRKD3	23683	hgsc.bcm.edu	37	2	37518105	37518105	+	Silent	SNP	A	A	G	rs138302731	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	91	43	91	0	0.472527	0	A|1.000;G|0.000	0.000	strong	.	PRKD3	170	.	NM_005813	exon3	c.T465C	p.H155H	GAGAGTATGTGGA	.	PASS	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	37	19	53209553	53209553	+	Missense_Mutation	SNP	G	G	A	rs75841962		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	69	151	0	0.5	0	.	.	weak	ZNF611,NS,carcinoma,0,1	ZNF611	72	1	NM_030972	exon7	c.C755T	p.P252L	AAATGGGGTATCT	.	PASS	Atlas-SNP
GFRAL	389400	hgsc.bcm.edu	37	6	55196587	55196587	+	Missense_Mutation	SNP	C	C	T	rs12199003	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	79	79	83	0	1	0	C|0.627;T|0.373	0.373	strong	.	GFRAL	91	.	NM_207410	exon2	c.C97T	p.R33C	TGCTTACGTGATG	.	PASS	Atlas-SNP
VN1R1	57191	hgsc.bcm.edu	37	19	57967133	57967133	+	Missense_Mutation	SNP	G	G	A	rs28649880	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	211	211	241	0	1	0	G|0.674;A|0.326	0.326	strong	VN1R1,NS,adenoma,0,1	VN1R1	48	1	NM_020633	exon1	c.C722T	p.S241F	ACCATGGAGCCAC	.	PASS	Atlas-SNP
RNF112	7732	hgsc.bcm.edu	37	17	19316656	19316656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	49	101	0	0.5	0	.	.	none	.	RNF112	37	.	NM_007148	exon5	c.G652A	p.A218T	TGGGGCGCCAATG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105408955	105408955	+	Missense_Mutation	SNP	A	A	G	rs2819422	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	208	206	184	0	0.990385	0	A|0.462;G|0.538	0.538	strong	.	AHNAK2	719	.	NM_138420	exon7	c.T12833C	p.V4278A	AGCCGCACACTGT	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	37	2	238243292	238243292	+	Missense_Mutation	SNP	G	G	A	rs1131296	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	57	123	0	0.431818	0	G|0.635;A|0.365	0.365	strong	.	COL6A3	608	.	NM_004369	exon41	c.C9206T	p.T3069I	TGGTAGGTGGCTC	.	PASS	Atlas-SNP
GFM1	85476	hgsc.bcm.edu	37	3	158408032	158408032	+	Missense_Mutation	SNP	G	G	A	rs62288347	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	101	49	95	0	0.485149	0	G|0.986;A|0.014	0.014	strong	.	GFM1	83	.	NM_024996	exon16	c.G1990A	p.V664I	GGACAAGTAATTG	.	PASS	Atlas-SNP
CALCR	799	hgsc.bcm.edu	37	7	93108763	93108763	+	Silent	SNP	G	G	C	rs144326254	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	276	132	266	1	0.478261	0.0037594	G|0.995;C|0.005	0.005	strong	.	CALCR	200	.	NM_001164737	exon5	c.C162G	p.P54P	TGGCTTGGGCTCT	.	PASS	Atlas-SNP
SLC6A5	9152	hgsc.bcm.edu	37	11	20623023	20623023	+	Silent	SNP	C	C	T	rs2241941	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	44	43	35	0	0.977273	0	C|0.662;A|0.004	.	strong	.	SLC6A5	151	.	NM_004211	exon2	c.C352T	p.L118L	AACGCGCTGCACT	.	PASS	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48761105	48761105	+	Silent	SNP	C	C	T	rs2277624	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	31	11	33	0	0.354839	0	C|0.739;T|0.261	0.261	strong	.	ABCC3	138	.	NM_003786	exon27	c.C3942T	p.H1314H	TGTGCACGGTGGC	.	PASS	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	37	10	105900732	105900732	+	Silent	SNP	C	C	T	rs45618238	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	80	34	49	0	0.425	0	C|0.985;T|0.015	0.015	strong	.	WDR96	183	.	NM_025145	exon34	c.G4299A	p.Q1433Q	ATTCAACTGGAAT	.	PASS	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	37	1	38184343	38184343	+	Missense_Mutation	SNP	T	T	C	rs201769517	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	83	138	0	0.557047	0	T|0.998;C|0.002	0.002	strong	.	EPHA10	120	.	NM_001099439	exon16	c.A2902G	p.M968V	CAGTCATCTCGGC	.	PASS	Atlas-SNP
CHST15	51363	hgsc.bcm.edu	37	10	125798111	125798111	+	Silent	SNP	T	T	C	rs28375663	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	142	71	163	0	0.5	0	T|0.852;C|0.148	0.148	strong	CHST15_ENST00000421115,NS,carcinoma,0,2	CHST15	134	2	NM_014863	exon5	c.A1110G	p.P370P	AAACGGTGGCTCG	.	PASS	Atlas-SNP
OR4A5	81318	hgsc.bcm.edu	37	11	51411740	51411740	+	Missense_Mutation	SNP	A	A	T	rs35083184	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	117	59	105	0	0.504274	0	A|0.903;T|0.097	0.097	strong	.	OR4A5	116	.	NM_001005272	exon1	c.T656A	p.L219Q	GAGCTTAGGATGA	.	PASS	Atlas-SNP
MTRNR2L5	100463289	hgsc.bcm.edu	37	10	57359697	57359697	+	Missense_Mutation	SNP	C	C	T	rs11004928	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	7	7	4	0	1	0	C|0.642;T|0.358	0.358	strong	.	.	.	.	NM_001190478	exon1	c.C38T	p.T13I	TTTCAACCAGTGA	.	PASS	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	37	17	73747128	73747128	+	Silent	SNP	G	G	A	rs61735289	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	82	47	52	0	0.573171	0	G|0.951;A|0.049	0.049	strong	ITGB4,rectum,carcinoma,0,1	ITGB4	165	1	NM_001005731	exon30	c.G3729A	p.P1243P	TGAGCCGGCTGAG	.	PASS	Atlas-SNP
NUDT6	11162	hgsc.bcm.edu	37	4	123838758	123838758	+	Missense_Mutation	SNP	A	A	G	rs12648093	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	202	108	168	1	0.534653	0.00595238	A|0.369;G|0.631	0.631	strong	NUDT6_ENST00000304430,NS,carcinoma,0,1	NUDT6	50	1	NM_007083	exon2	c.T340C	p.C114R	GAAAGCAGAAGCC	.	scavenged	Atlas-SNP
ZNF492	57615	hgsc.bcm.edu	37	19	22847072	22847072	+	Missense_Mutation	SNP	G	G	C	rs71236900	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	410	171	396	0	0.417073	0	G|0.500;C|0.500	0.500	strong	ZNF492_ENST00000456783,NS,carcinoma,0,1	ZNF492	129	1	NM_020855	exon4	c.G601C	p.E201Q	TGCGAAGAGTGTG	.	scavenged	Atlas-SNP
TMEM81	388730	hgsc.bcm.edu	37	1	205052998	205052998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	138	61	155	1	0.442029	0.00645161	.	.	none	TMEM81,NS,carcinoma,+2,1	TMEM81	23	1	NM_203376	exon1	c.C451A	p.Q151K	ACTCCTGAGCATA	.	scavenged	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	37	10	113935379	113935379	+	Missense_Mutation	SNP	T	T	C	rs10787428	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	93	39	74	0	0.419355	0	C|0.558;N|0.000	0.558	strong	.	GPAM	68	.	NM_001244949	exon6	c.A392G	p.E131G	ACATTTTCAGTCA	.	PASS	Atlas-SNP
CAPN1	823	hgsc.bcm.edu	37	11	64950970	64950970	+	Silent	SNP	C	C	T	rs17583	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	149	156	1	1	0.00641026	C|0.734;T|0.266	0.266	strong	CAPN1,colon,carcinoma,0,1	CAPN1	44	1	NM_001198869	exon4	c.C363T	p.I121I	GGCCATCGCCTCC	.	PASS	Atlas-SNP
CCL8	6355	hgsc.bcm.edu	37	17	32647891	32647891	+	Missense_Mutation	SNP	C	C	A	rs117180331	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	64	157	0	0.421053	0	C|0.995;A|0.005	0.005	strong	.	CCL8	12	.	NM_005623	exon3	c.C265A	p.H89N	ATGAAGCATCTGG	.	PASS	Atlas-SNP
DLK1	8788	hgsc.bcm.edu	37	14	101200645	101200645	+	Silent	SNP	T	T	C	rs1802710	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	174	173	182	1	0.994253	0.00549451	T|0.353;C|0.647	0.647	strong	DLK1,NS,carcinoma,0,3	DLK1	57	3	NM_003836	exon5	c.T564C	p.I188I	TGACATTGGGGGC	.	PASS	Atlas-SNP
SOX7	83595	hgsc.bcm.edu	37	8	10583616	10583616	+	Missense_Mutation	SNP	C	C	T	rs180762782	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	78	34	65	0	0.435897	0	C|0.997;T|0.003	0.003	strong	.	SOX7	50	.	NM_031439	exon2	c.G799A	p.G267S	AGACGCCGGGGGA	.	PASS	Atlas-SNP
EIF3G	8666	hgsc.bcm.edu	37	19	10226256	10226256	+	Silent	SNP	A	A	G	rs7710	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	84	113	1	0.988235	0.00884956	A|0.564;G|0.436	0.436	strong	.	EIF3G	16	.	NM_003755	exon10	c.T846C	p.F282F	GAAGGCAAAGCCC	.	PASS	Atlas-SNP
NDUFA8	4702	hgsc.bcm.edu	37	9	124914613	124914613	+	Silent	SNP	C	C	T	rs4679	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	132	132	124	0	1	0	C|0.603;T|0.397	0.397	strong	NDUFA8,colon,carcinoma,0,1	NDUFA8	20	1	NM_014222	exon2	c.G126A	p.E42E	CATAAACTCCTTG	.	PASS	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	37	10	52005057	52005057	+	Silent	SNP	T	T	C	rs201282742	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	85	195	0	0.491329	0	T|0.999;C|0.001	0.001	weak	.	ASAH2	69	.	NM_019893	exon2	c.A285G	p.L95L	CTGAAATAGAGGA	.	PASS	Atlas-SNP
SLC46A1	113235	hgsc.bcm.edu	37	17	26731959	26731959	+	Silent	SNP	G	G	C	rs185900287	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	72	101	0	0.55814	0	G|0.999;C|0.001	0.001	strong	.	SLC46A1	17	.	NM_001242366	exon2	c.C756G	p.V252V	GAGCTGGACAATG	.	PASS	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	37	9	35958047	35958047	+	Missense_Mutation	SNP	T	T	C	rs2233558	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	129	56	106	0	0.434109	0	T|0.637;C|0.363	0.363	strong	.	OR2S2	46	.	NM_019897	exon1	c.A49G	p.R17G	AGAGCCTCAGGAG	.	PASS	Atlas-SNP
NME8	51314	hgsc.bcm.edu	37	7	37907304	37907304	+	Missense_Mutation	SNP	T	T	C	rs10250905	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	51	168	0	0.401575	0	T|0.241;C|0.759	0.759	strong	TXNDC3,colon,carcinoma,-1,1	.	.	1	NM_016616	exon11	c.T622C	p.C208R	TTGTAGTGTGACT	.	PASS	Atlas-SNP
RNASE6	6039	hgsc.bcm.edu	37	14	21250124	21250124	+	Missense_Mutation	SNP	G	G	A	rs1045922	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	235	235	189	1	1	0.00529101	G|0.764;A|0.236	0.236	strong	.	RNASE6	7	.	NM_005615	exon2	c.G266A	p.R89Q	ATCGTCGGCACAA	.	PASS	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	37	13	109777503	109777503	+	Missense_Mutation	SNP	A	A	G	rs157024	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	288	130	254	0	0.451389	0	A|0.869;G|0.131	0.131	strong	.	MYO16	285	.	NM_001198950	exon30	c.A3579G	p.I1193M	GAGAATAAGCATC	.	PASS	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235945294	235945294	+	Silent	SNP	T	T	C	rs6696123	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	90	43	89	0	0.477778	0	T|0.614;C|0.386	0.386	strong	.	LYST	370	.	NM_000081	exon15	c.A4956G	p.L1652L	GGATGATAAACAA	.	PASS	Atlas-SNP
NLE1	54475	hgsc.bcm.edu	37	17	33464864	33464864	+	Missense_Mutation	SNP	C	C	T	rs7215209	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	34	17	60	0	0.5	0	C|0.201;T|0.799	0.799	strong	.	NLE1	42	.	NM_018096	exon5	c.G506A	p.R169K	AGCTTCCTGCCAT	.	PASS	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57756643	57756643	+	Missense_Mutation	SNP	C	C	T	rs3809611	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	86	45	69	1	0.523256	0.0144928	C|0.781;T|0.218	0.218	strong	CCDC135,NS,carcinoma,-1,1	CCDC135	97	1	NM_032269	exon10	c.C1298T	p.P433L	GCTGCCCGAACGG	.	scavenged	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	37	1	153994647	153994647	+	Missense_Mutation	SNP	C	C	T	rs11264875	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	63	131	0	0.552632	0	C|0.741;T|0.259	0.259	strong	.	NUP210L	181	.	NM_001159484	exon32	c.G4471A	p.V1491I	CTCCAACAAAGGT	.	PASS	Atlas-SNP
PDLIM1	9124	hgsc.bcm.edu	37	10	97023630	97023630	+	Missense_Mutation	SNP	T	T	C	rs2296961	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	139	84	125	0	0.604317	0	T|0.769;C|0.231	0.231	strong	.	PDLIM1	33	.	NM_020992	exon4	c.A524G	p.N175S	CTGCTGTTCGCCT	.	PASS	Atlas-SNP
SLC24A4	123041	hgsc.bcm.edu	37	14	92909073	92909073	+	Silent	SNP	T	T	C	rs941650	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	203	103	221	1	0.507389	0.00452489	T|0.185;C|0.815	0.815	strong	.	SLC24A4	112	.	NM_153647	exon7	c.T495C	p.H165H	CACCCATGGGGAC	.	PASS	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	37	1	24201920	24201920	+	Missense_Mutation	SNP	T	T	C	rs2501432	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	49	137	0	0.471154	0	T|0.468;C|0.532	0.532	strong	CNR2,NS,carcinoma,0,2	CNR2	78	2	NM_001841	exon2	c.A188G	p.Q63R	CGGAGTTGGTGGG	.	PASS	Atlas-SNP
TMEM237	65062	hgsc.bcm.edu	37	2	202490812	202490812	+	Missense_Mutation	SNP	C	C	A	rs73989521	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	77	174	0	0.4375	0	C|0.943;A|0.057	0.057	strong	.	TMEM237	21	.	NM_001044385	exon11	c.G1096T	p.A366S	GAAGAGCCACCAC	.	PASS	Atlas-SNP
NANOG	79923	hgsc.bcm.edu	37	12	7945757	7945757	+	Silent	SNP	C	C	T	rs78166980		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	148	78	128	0	0.527027	0	.	.	weak	.	NANOG	30	.	NM_024865	exon2	c.C363T	p.S121S	CCTCAGCCTCCAG	.	PASS	Atlas-SNP
RFX8	731220	hgsc.bcm.edu	37	2	102018908	102018908	+	Missense_Mutation	SNP	A	A	G	rs2175968	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	95	68	0	0.989583	0	A|0.523;G|0.477	0.477	strong	.	RFX8	16	.	NM_001145664	exon11	c.T1235C	p.M412T	TTGCCCATGGCAG	.	PASS	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	37	3	127540635	127540635	+	Silent	SNP	C	C	T	rs11538698	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	74	153	0	0.582677	0	T|0.033;G|0.000;C|0.967	0.033	strong	.	MGLL	19	.	NM_007283	exon2	c.G57A	p.R19R	CGGGGTCCGCCTG	.	PASS	Atlas-SNP
EBI3	10148	hgsc.bcm.edu	37	19	4237067	4237067	+	Silent	SNP	A	A	G	rs4905	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	39	19	32	0	0.487179	0	A|0.585;G|0.415	0.415	strong	.	EBI3	15	.	NM_005755	exon5	c.A672G	p.T224T	TGCCACAATGAGC	.	PASS	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	37	4	77662486	77662486	+	Missense_Mutation	SNP	G	G	T	rs71607374	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	56	119	0	0.523364	0	G|0.935;T|0.065	0.065	strong	SHROOM3,NS,carcinoma,0,1	SHROOM3	134	1	NM_020859	exon5	c.G3160T	p.V1054L	AGCAGCGTGGCCG	.	PASS	Atlas-SNP
VWA3A	146177	hgsc.bcm.edu	37	16	22155629	22155629	+	Missense_Mutation	SNP	A	A	G	rs9937453	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	257	134	246	2	0.521401	0.00813008	A|0.627;G|0.373	0.373	strong	VWA3A_ENST00000389398,NS,carcinoma,-1,2	VWA3A	115	2	NM_173615	exon26	c.A2654G	p.N885S	GTCCCAACTGCAC	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1016851	1016851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	1056	50	1284	47	0.0473485	0.0366044	.	.	none	MUC6_ENST00000421673,NS,carcinoma,+2,2	MUC6	408	2	NM_005961	exon31	c.A5950G	p.M1984V	CAGTCATAGGACC	.	scavenged	Atlas-SNP
KRTAP7-1	337878	hgsc.bcm.edu	37	21	32201835	32201835	+	Missense_Mutation	SNP	A	A	C	rs9982675	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	176	179	0	1	0	A|0.504;C|0.496	0.496	strong	.	.	.	.	NM_181606	exon2	c.T182G	p.I61S	TTGTTGATGTTGC	.	PASS	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	37	17	39579112	39579112	+	Missense_Mutation	SNP	G	G	A	rs16966811	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	95	42	87	0	0.442105	0	G|0.849;A|0.151	0.151	strong	.	KRT37	61	.	NM_003770	exon3	c.C650T	p.A217V	AGGGTCGCGTCAT	.	PASS	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	37	12	46322449	46322449	+	Silent	SNP	C	C	T	rs10880868	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	201	200	210	0	0.995025	0	C|0.857;T|0.143	0.143	strong	SCAF11,NS,carcinoma,0,1	SCAF11	145	1	NM_004719	exon11	c.G1035A	p.G345G	ATCACACCCAGAA	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10467647	10467647	+	Missense_Mutation	SNP	G	G	C	rs200373757	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	173	26	202	1	0.150289	0.00495049	G|0.966;C|0.034	0.034	strong	RP1L1,NS,haematopoietic_neoplasm,0,1	RP1L1	453	1	NM_178857	exon4	c.C3961G	p.Q1321E	CTAACTGCACCGC	.	scavenged	Atlas-SNP
GMNC	647309	hgsc.bcm.edu	37	3	190578566	190578566	+	Missense_Mutation	SNP	A	A	G	rs13075089	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	111	58	115	0	0.522523	0	A|0.589;G|0.411	0.411	strong	.	GMNC	12	.	NM_001146686	exon2	c.T85C	p.S29P	CACTAGATTCTGA	.	PASS	Atlas-SNP
FUT2	2524	hgsc.bcm.edu	37	19	49206462	49206462	+	Silent	SNP	C	C	T	rs681343	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	35	13	34	0	0.371429	0	C|0.571;T|0.429	0.429	strong	FUT2,caecum,carcinoma,0,1	FUT2	30	1	NM_001097638	exon2	c.C249T	p.Y83Y	ACTGTACGCCCTG	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152129101	152129101	+	Silent	SNP	A	A	G	rs117596468	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	290	47	321	1	0.162069	0.00311526	A|0.953;G|0.047	0.047	strong	RPTN,NS,carcinoma,0,1	RPTN	123	1	NM_001122965	exon3	c.T474C	p.H158H	CTGACCATGGTGG	.	scavenged	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	37	3	12861586	12861586	+	Silent	SNP	T	T	C	rs4684883	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	75	46	67	0	0.613333	0	T|0.852;C|0.148	0.148	strong	.	CAND2	138	.	NM_001162499	exon11	c.T2946C	p.G982G	TGCAGGTCGGCCA	.	PASS	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	37	1	11014118	11014118	+	Missense_Mutation	SNP	C	C	T	rs45537241	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	250	119	236	0	0.476	0	C|0.852;T|0.148	0.148	strong	.	C1orf127	134	.	NM_001170754	exon10	c.G1057A	p.A353T	CCGGGGCAGCCAT	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100681762	100681762	+	Silent	SNP	A	A	G	rs10953316	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	96	95	83	0	0.989583	0	A|0.326;G|0.674	0.674	strong	MUC17,NS,carcinoma,+1,1	MUC17	804	1	NM_001040105	exon3	c.A7065G	p.T2355T	TGAAACAAGCACA	.	PASS	Atlas-SNP
KRIT1	889	hgsc.bcm.edu	37	7	91864857	91864857	+	Missense_Mutation	SNP	T	T	C	rs140396626	bycluster	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	118	61	110	0	0.516949	0	T|1.000;C|0.000	0.000	weak	.	KRIT1	66	.	NM_194456	exon9	c.A589G	p.T197A	ATTCAGTAGCATA	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	37	20	62194128	62194128	+	Missense_Mutation	SNP	G	G	A	rs3810485	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	23	15	14	0	0.652174	0	G|0.740;A|0.260	0.260	strong	.	.	.	.	NM_001037335	exon9	c.C6047T	p.P2016L	GGAGCCGGCAGCC	.	PASS	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	37	1	173516903	173516903	+	Silent	SNP	A	A	G	rs10494490	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	104	54	130	0	0.519231	0	A|0.637;G|0.363	0.363	strong	SLC9A11,NS,carcinoma,-2,1	.	.	1	NM_178527	exon13	c.T1482C	p.N494N	CATATCATTATGT	.	PASS	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	37	6	31324143	31324143	+	Nonsense_Mutation	SNP	G	G	T	rs12697944	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	56	93	11	0.658824	0.11828	T|0.046;G|0.954	0.046	strong	HLA-B,colon,carcinoma,-1,1	HLA-B	54	1	NM_005514	exon3	c.C420A	p.Y140X	GTAGGCGTACTGG	.	scavenged	Atlas-SNP
DENND1A	57706	hgsc.bcm.edu	37	9	126146138	126146138	+	Silent	SNP	T	T	C	rs2808410	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	149	72	128	0	0.483221	0	T|0.986;C|0.014	0.014	strong	.	DENND1A	112	.	NM_020946	exon21	c.A1632G	p.A544A	ACTCTCTGCCTCG	.	PASS	Atlas-SNP
ENTPD5	957	hgsc.bcm.edu	37	14	74441684	74441684	+	Silent	SNP	G	G	A	rs2074932	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	102	106	0	1	0	G|0.494;A|0.506	0.506	strong	ENTPD5,NS,carcinoma,+1,1	ENTPD5	26	1	NM_001249	exon11	c.C727T	p.L243L	ATCCCAGGTAACT	.	PASS	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	37	11	55681130	55681130	+	Missense_Mutation	SNP	A	A	T	rs34573569	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	66	30	42	0	0.454545	0	A|0.877;T|0.123	0.123	strong	.	OR5W2	112	.	NM_001001960	exon1	c.T929A	p.F310Y	CCTTAAAATAAAA	.	PASS	Atlas-SNP
MYSM1	114803	hgsc.bcm.edu	37	1	59126851	59126851	+	Silent	SNP	A	A	G	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	59	27	54	0	0.457627	0	.	.	none	.	MYSM1	50	.	NM_001085487	exon19	c.T2319C	p.C773C	CTGCAAACAAGTC	.	PASS	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	37	19	56552456	56552456	+	Silent	SNP	G	G	T	rs61732213	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	154	75	160	0	0.487013	0	G|0.815;T|0.185	0.185	strong	.	NLRP5	217	.	NM_153447	exon11	c.G2955T	p.L985L	GAGGCTGATGTGA	.	PASS	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	37	11	117308795	117308795	+	Silent	SNP	G	G	A	rs2253440	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	56	122	0	0.509091	0	G|0.808;A|0.192	0.192	strong	DSCAML1,colon,carcinoma,0,1	DSCAML1	286	1	NM_020693	exon25	c.C4428T	p.F1476F	TAGCACGAAGCCT	.	PASS	Atlas-SNP
SLC2A9	56606	hgsc.bcm.edu	37	4	9828099	9828099	+	Silent	SNP	G	G	A	rs144428359	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	234	120	245	0	0.512821	0	G|0.995;A|0.005	0.005	strong	.	SLC2A9	158	.	NM_020041	exon12	c.C1545T	p.S515S	CCTTTTGGAAAAT	.	PASS	Atlas-SNP
CATSPER4	378807	hgsc.bcm.edu	37	1	26527863	26527863	+	Silent	SNP	C	C	T	rs17163674	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	152	68	163	0	0.447368	0	C|0.906;T|0.094	0.094	strong	.	CATSPER4	59	.	NM_198137	exon9	c.C1218T	p.R406R	GGTGCGCGCAATC	.	PASS	Atlas-SNP
SNX5	27131	hgsc.bcm.edu	37	20	17932210	17932210	+	Silent	SNP	C	C	T	rs2273448	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	366	177	369	0	0.483607	0	C|0.749;T|0.251	0.251	strong	.	SNX5	38	.	NM_014426	exon6	c.G543A	p.E181E	AAACATCTCTTTA	.	PASS	Atlas-SNP
USP43	124739	hgsc.bcm.edu	37	17	9586165	9586165	+	Silent	SNP	C	C	T	rs12453943	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	114	53	102	0	0.464912	0	C|0.627;T|0.373	0.373	strong	.	USP43	65	.	NM_001267576	exon7	c.C1131T	p.S377S	GGCCTCCCCACGC	.	PASS	Atlas-SNP
ZBTB40	9923	hgsc.bcm.edu	37	1	22852880	22852880	+	Missense_Mutation	SNP	G	G	C	rs45502998	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	81	43	84	0	0.530864	0	G|0.974;C|0.026	0.026	strong	.	ZBTB40	87	.	NM_001083621	exon19	c.G3711C	p.E1237D	TGGTGAGGCCAAA	.	PASS	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84639314	84639314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	102	58	97	0	0.568627	0	.	.	none	.	ADAMTSL3	290	.	NM_207517	exon20	c.C2569T	p.P857S	CGCATCCCCCTCA	.	PASS	Atlas-SNP
AP1M1	8907	hgsc.bcm.edu	37	19	16314299	16314299	+	Silent	SNP	C	C	T	rs117647142	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	107	48	100	1	0.448598	0.01	C|0.981;T|0.019	0.019	strong	AP1M1,NS,carcinoma,+2,1	AP1M1	48	1	NM_001130524	exon2	c.C72T	p.D24D	TGGCGACGTGGAC	.	scavenged	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	37	12	13764774	13764774	+	Silent	SNP	G	G	A	rs1805482	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	88	53	88	0	0.602273	0	G|0.753;A|0.247	0.247	strong	.	GRIN2B	303	.	NM_000834	exon8	c.C1665T	p.S555S	GTCAGCGCTGAAT	.	PASS	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	37	13	28608459	28608459	+	Silent	SNP	T	T	C	rs34374211	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	137	71	134	0	0.518248	0	T|0.897;C|0.103	0.103	strong	FLT3,colon,carcinoma,-2,8	FLT3	15525	8	NM_004119	exon13	c.A1683G	p.L561L	ACAAATTAGCAGG	.	PASS	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	37	15	52643564	52643564	+	Missense_Mutation	SNP	G	G	A	rs1058219	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	242	132	238	0	0.545455	0	G|0.833;A|0.167	0.167	strong	.	MYO5A	145	.	NM_000259	exon28	c.C3736T	p.R1246C	GGACACGGTAGGC	.	PASS	Atlas-SNP
DEDD	9191	hgsc.bcm.edu	37	1	161094190	161094190	+	Silent	SNP	A	A	G	rs1135783	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	244	133	240	1	0.545082	0.00416667	A|0.915;G|0.085	0.085	strong	.	DEDD	22	.	NM_001039711	exon2	c.T63C	p.H21H	CAGCCCATGTTCC	.	PASS	Atlas-SNP
RRP1B	23076	hgsc.bcm.edu	37	21	45106786	45106786	+	Missense_Mutation	SNP	T	T	G	rs138939671	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	27	12	36	0	0.444444	0	T|0.996;G|0.004	0.004	strong	.	RRP1B	51	.	NM_015056	exon12	c.T1111G	p.L371V	AAACTTTTAGAGA	.	PASS	Atlas-SNP
HDLBP	3069	hgsc.bcm.edu	37	2	242179134	242179134	+	Silent	SNP	G	G	A	rs10153800	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	112	50	88	0	0.446429	0	G|0.800;A|0.200	0.200	strong	.	HDLBP	118	.	NM_005336	exon19	c.C2493T	p.G831G	CACCCCGCCATAC	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105406238	105406238	+	Missense_Mutation	SNP	A	A	C	rs2819419	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	46	46	21	1	1	0.047619	A|0.417;C|0.583	0.583	strong	AHNAK2,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.T15550G	p.Y5184D	GCGAGTACTTGGT	.	scavenged	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	37	11	55563738	55563738	+	Missense_Mutation	SNP	G	G	A	rs67863827	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	176	80	184	0	0.454545	0	G|0.907;A|0.093	0.093	strong	OR5D14,rectum,carcinoma,+1,4	OR5D14	116	4	NM_001004735	exon1	c.G707A	p.R236H	GTGGGCGCCACAA	.	PASS	Atlas-SNP
TRAF3IP3	80342	hgsc.bcm.edu	37	1	209936914	209936914	+	Silent	SNP	C	C	T	rs17015169	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	98	46	130	0	0.469388	0	C|0.642;T|0.358	0.358	strong	.	TRAF3IP3	68	.	NM_025228	exon8	c.C684T	p.A228A	TCAGGCCTCTGAC	.	PASS	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	37	2	185803364	185803364	+	Missense_Mutation	SNP	C	C	G	rs3731834	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	153	79	112	0	0.51634	0	C|0.853;G|0.147	0.147	strong	.	ZNF804A	322	.	NM_194250	exon4	c.C3241G	p.L1081V	ACACCTCTGCAGC	.	PASS	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	37	15	27018797	27018797	+	Silent	SNP	G	G	A	rs20318	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	67	43	75	0	0.641791	0	G|0.791;A|0.209	0.209	strong	GABRB3_ENST00000299267,NS,carcinoma,0,1	GABRB3	338	1	NM_021912	exon1	c.C75T	p.P25P	CCTGCGGGGCTCA	.	PASS	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48761385	48761385	+	Missense_Mutation	SNP	A	A	G	rs150601692	bycluster;byfrequency	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	85	60	56	0	0.705882	0	A|0.999;G|0.001	0.001	strong	.	ABCC3	138	.	NM_003786	exon28	c.A4030G	p.K1344E	GCGGCAAAGGGTG	.	PASS	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	37	2	241830969	241830969	+	Silent	SNP	G	G	A	rs10171067	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	113	60	91	0	0.530973	0	G|0.490;A|0.510	0.510	strong	.	C2orf54	14	.	NM_001085437	exon2	c.C726T	p.S242S	CTGGGCGCTGGCC	.	PASS	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	37	18	42532693	42532693	+	Missense_Mutation	SNP	C	C	A	rs1064204	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	127	60	111	0	0.472441	0	C|0.892;A|0.108	0.108	strong	.	SETBP1	577	.	NM_015559	exon4	c.C3388A	p.P1130T	ATGCAGCCTTCTC	.	PASS	Atlas-SNP
IL18	3606	hgsc.bcm.edu	37	11	112020916	112020916	+	Silent	SNP	T	T	G	rs549908	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	69	32	80	0	0.463768	0	T|0.780;G|0.220	0.220	strong	.	IL18	10	.	NM_001562	exon4	c.A105C	p.S35S	GTAATCTGATTCC	.	PASS	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	37	12	52162823	52162823	+	Missense_Mutation	SNP	C	C	T	rs117217073	bycluster;byfrequency;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	110	45	91	0	0.409091	0	C|0.991;T|0.009	0.009	strong	.	SCN8A	331	.	NM_014191	exon17	c.C3076T	p.R1026C	AAGCAGCGTGAGG	.	PASS	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	37	3	61989028	61989028	+	Missense_Mutation	SNP	A	A	G	rs140777402	bycluster;by1000genomes	TCGA-G8-6326-01A-11D-2210-10	TCGA-G8-6326-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6ae5496e-cf5b-4e6d-8bb1-a2c0cb904077	7b21bfff-b5f1-4796-b0bc-d4c529ebcbfd	87	40	103	0	0.45977	0	A|1.000;G|0.000	0.000	strong	PTPRG,NS,malignant_melanoma,-2,1	PTPRG	153	1	NM_002841	exon4	c.A376G	p.I126V	GTCGCCATCCTTC	.	PASS	Atlas-SNP
