Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
KRT2	3849	hgsc.bcm.edu	37	12	53045601	53045603	+	In_Frame_Del	DEL	CTG	CTG	-	rs369691469		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	120	17	67	0	0.141667	0	.	.	weak	.	KRT2	94	.	NM_000423	exon1	c.325_327del	p.109_109del	.	.	PASS	Atlas-Indel
KRT2	3849	hgsc.bcm.edu	37	12	53045651	53045653	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	97	10	65	0	0.103093	0	.	.	none	.	KRT2	94	.	NM_000423	exon1	c.275_277del	p.92_93del	.	.	PASS	Atlas-Indel
TPRX1	284355	hgsc.bcm.edu	37	19	48305613	48305624	+	In_Frame_Del	DEL	TTGGGCCTGAGA	TTGGGCCTGAGA	-	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	TTGGGCCTGAGA	TTGGGCCTGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	32	11	32	0	0.34375	0	.	.	none	TPRX1,NS,carcinoma,0,1	TPRX1	46	1	NM_198479	exon2	c.645_656del	p.215_219del	.	.	PASS	Atlas-Indel
PLIN4	729359	hgsc.bcm.edu	37	19	4511540	4511737	+	In_Frame_Del	DEL	TTGGCCACATTCGCAGCACCGGTCACCCCACTGCACACAGCATCCTTGGTACCAGTTAACACAGTCTTGGTGGTGTCCATGCCGGTCTGGACAGTCCCTTTGGCCAACTTCACAGCCCCTGTGAGCCCAGTGGACACAGCATCTTTAGTGCCAGTCAGGACAGACTTTGTAGTGTCCAGGCCCCCTTGGATGGCCCCT	TTGGCCACATTCGCAGCACCGGTCACCCCACTGCACACAGCATCCTTGGTACCAGTTAACACAGTCTTGGTGGTGTCCATGCCGGTCTGGACAGTCCCTTTGGCCAACTTCACAGCCCCTGTGAGCCCAGTGGACACAGCATCTTTAGTGCCAGTCAGGACAGACTTTGTAGTGTCCAGGCCCCCTTGGATGGCCCCT	-	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	TTGGCCACATTCGCAGCACCGGTCACCCCACTGCACACAGCATCCTTGGTACCAGTTAACACAGTCTTGGTGGTGTCCATGCCGGTCTGGACAGTCCCTTTGGCCAACTTCACAGCCCCTGTGAGCCCAGTGGACACAGCATCTTTAGTGCCAGTCAGGACAGACTTTGTAGTGTCCAGGCCCCCTTGGATGGCCCCT	TTGGCCACATTCGCAGCACCGGTCACCCCACTGCACACAGCATCCTTGGTACCAGTTAACACAGTCTTGGTGGTGTCCATGCCGGTCTGGACAGTCCCTTTGGCCAACTTCACAGCCCCTGTGAGCCCAGTGGACACAGCATCTTTAGTGCCAGTCAGGACAGACTTTGTAGTGTCCAGGCCCCCTTGGATGGCCCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	94	17	78	.	0.181	.	.	.	none	.	PLIN4	191	.	NM_001080400	exon3	c.2194_2391del	p.732_797del	.	.	PASS	Pindel
AR	367	hgsc.bcm.edu	37	X	66765158	66765158	+	Missense_Mutation	SNP	T	T	A	rs78686797	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	100	8	165	0	0.08	0	.	.	weak	.	AR	249	.	NM_000044	exon1	c.T170A	p.L57Q	TGCTGCTGCAGCA	.	PASS	Atlas-SNP
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32487265	32487265	+	Missense_Mutation	SNP	C	C	G	rs139485758	bycluster;byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	14	14	20	19	1	0.95	A|0.003;C|0.930;G|0.067	0.067	strong	HLA-DRB5,NS,NS,0,1	HLA-DRB5	31	1	NM_002125	exon3	c.G534C	p.Q178H	TCCATTCTGAATC	.	scavenged	Atlas-SNP
ZSCAN5A	79149	hgsc.bcm.edu	37	19	56736100	56736100	+	Missense_Mutation	SNP	T	T	C	rs200493184		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	278	4	279	1	0.0143885	0.00358423	.	.	weak	ZSCAN5A,trunk,malignant_melanoma,0,2	ZSCAN5A	118	2	NM_024303	exon2	c.A316G	p.M106V	CGTTCATCATGAC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507539	195507539	+	Missense_Mutation	SNP	G	G	A	rs112530244		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	102	9	113	7	0.0882353	0.0619469	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C10912T	p.L3638F	AGGAAAGGCTGGT	.	scavenged	Atlas-SNP
HIST1H2BG	8339	hgsc.bcm.edu	37	6	26216764	26216764	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	88	19	105	0	0.215909	0	.	.	none	.	HIST1H2BG	25	.	NM_003518	exon1	c.G108A	p.E36E	GTAGCTCTCCTTA	.	PASS	Atlas-SNP
HIST1H1D	3007	hgsc.bcm.edu	37	6	26234674	26234674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	74	16	84	0	0.216216	0	.	.	none	.	HIST1H1D	40	.	NM_005320	exon1	c.C488G	p.A163G	GCGGTTGCTGGCT	.	PASS	Atlas-SNP
PLXDC2	84898	hgsc.bcm.edu	37	10	20436808	20436808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	102	14	105	0	0.137255	0	.	.	none	.	PLXDC2	108	.	NM_032812	exon6	c.C760T	p.R254X	GATGGACGAATCA	.	PASS	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145296373	145296373	+	Missense_Mutation	SNP	G	G	T	rs3969711	bycluster;byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	41	7	56	2	0.170732	0.0357143	G|0.700;T|0.300	0.300	strong	NBPF10,NS,carcinoma,0,3	NBPF10	221	3	NM_001039703	exon3	c.G295T	p.V99F	GTCCTAGTTCACT	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509171	195509171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	101	9	92	4	0.0891089	0.0434783	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.C9280T	p.L3094F	AGGAAAGGCTGGT	.	scavenged	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70924294	70924294	+	Silent	SNP	C	C	T	rs61738695	byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	88	4	82	3	0.0454545	0.0365854	C|0.779;T|0.221	0.221	strong	ADAM21_ENST00000267499,NS,malignant_melanoma,+1,4	ADAM21	181	4	NM_003813	exon2	c.C78T	p.S26S	TATTTCCGGCTAC	.	scavenged	Atlas-SNP
CNN2	1265	hgsc.bcm.edu	37	19	1037764	1037764	+	Silent	SNP	C	C	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108	26	137	0	0.240741	0	.	.	none	.	CNN2	26	.	NM_004368	exon7	c.C795G	p.G265G	CCTGGGCCGGCAG	.	PASS	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78795978	78795978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108	14	97	0	0.12963	0	.	.	none	.	ROBO1	833	.	NM_002941	exon5	c.G572T	p.C191F	GGTTGGCATTCCA	.	PASS	Atlas-SNP
OR52I2	143502	hgsc.bcm.edu	37	11	4608393	4608393	+	Silent	SNP	A	A	G	rs56002758	bycluster;byfrequency;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	98	6	97	3	0.0612245	0.0309278	A|0.972;G|0.028	0.028	strong	OR52I2,NS,carcinoma,0,1	OR52I2	50	1	NM_001005170	exon1	c.A351G	p.S117S	CTGCTCAGGAGAC	.	scavenged	Atlas-SNP
ZSCAN5A	79149	hgsc.bcm.edu	37	19	56736102	56736102	+	Missense_Mutation	SNP	A	A	T	rs201600248		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	279	4	280	1	0.0143369	0.00357143	.	.	weak	ZSCAN5A,trunk,malignant_melanoma,0,2	ZSCAN5A	118	2	NM_024303	exon2	c.T314A	p.M105K	TTCATCATGACTA	.	scavenged	Atlas-SNP
PPP2R5A	5525	hgsc.bcm.edu	37	1	212532087	212532087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	318	47	269	0	0.147799	0	.	.	none	.	PPP2R5A	48	.	NM_006243	exon12	c.T1286G	p.L429R	GCAAGCTTTTCGA	.	PASS	Atlas-SNP
NBPF3	84224	hgsc.bcm.edu	37	1	21795388	21795388	+	Missense_Mutation	SNP	A	A	G	rs1827293	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	220	4	253	0	0.0181818	0	A|0.554;G|0.446	0.446	strong	NBPF3,NS,carcinoma,0,1	NBPF3	55	1	NM_001256416	exon3	c.C341G	p.A114G	ATAATTACGGTAA	.	scavenged	Atlas-SNP
RELL1	768211	hgsc.bcm.edu	37	4	37650923	37650923	+	Silent	SNP	G	G	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	125	3	139	0	0.024	0	.	.	none	RELL1,rectum,carcinoma,0,1	RELL1	16	1	NM_001085399	exon2	c.C288A	p.I96I	CTCTTCGATATCT	.	scavenged	Atlas-SNP
OR10G4	390264	hgsc.bcm.edu	37	11	123887184	123887184	+	Silent	SNP	T	T	G	rs4936882	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	59	2	79	1	0.0338983	0.0126582	T|0.297;G|0.703	0.703	strong	OR10G4,NS,carcinoma,0,1	OR10G4	77	1	NM_001004462	exon1	c.T903G	p.L301L	GAAACTTAGAGAC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506982	195506982	+	Silent	SNP	G	G	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	38	4	40	4	0.105263	0.1	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C11469G	p.T3823T	AAGAGGGGTGGTG	.	scavenged	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	37	16	58577327	58577327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	188	8	215	2	0.0425532	0.00930233	.	.	none	CNOT1_ENST00000441024,caecum,carcinoma,0,1	CNOT1	359	1	NM_206999	exon31	c.T4618G	p.F1540V	AAAAAAAACACAC	.	scavenged	Atlas-SNP
THOC1	9984	hgsc.bcm.edu	37	18	246400	246400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	639	9	568	1	0.0140845	0.00176056	.	.	none	THOC1,colon,carcinoma,-1,1	THOC1	43	1	NM_005131	exon11	c.C842A	p.A281D	CTTGAGGCCTGAG	.	scavenged	Atlas-SNP
NHSL1	57224	hgsc.bcm.edu	37	6	138751531	138751531	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	89	27	72	0	0.303371	0	.	.	none	.	NHSL1	99	.	NM_020464	exon5	c.A3963G	p.A1321A	CTCACCTGCTCCG	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190878625	190878625	+	Missense_Mutation	SNP	A	A	G	rs373840195		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	607	10	641	5	0.0164745	0.00780031	.	.	weak	FRG1,NS,carcinoma,0,3	FRG1	76	3	NM_004477	exon6	c.A505G	p.S169G	GCAAAAAGTAAAA	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509650	195509650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	102	3	99	2	0.0294118	0.020202	.	.	none	MUC4_ENST00000463781,trunk,malignant_melanoma,-1,2	MUC4	1505	2	NM_018406	exon2	c.T8801C	p.L2934P	GAGGAAAGGCTGG	.	scavenged	Atlas-SNP
PRAMEF11	440560	hgsc.bcm.edu	37	1	12888397	12888397	+	Missense_Mutation	SNP	C	C	T	rs78478513		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	273	62	283	42	0.227106	0.14841	C|0.250;T|0.750	0.750	weak	PRAMEF11,NS,other,0,1	PRAMEF11	72	1	NM_001146344	exon2	c.G127A	p.D43N	GCCCATCGAGCAC	.	scavenged	Atlas-SNP
DNMT3L	29947	hgsc.bcm.edu	37	21	45675970	45675970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	276	3	305	0	0.0108696	0	.	.	none	DNMT3L,NS,carcinoma,-1,1	DNMT3L	33	1	NM_013369	exon7	c.T584C	p.L195P	TCAAAAAGGGACA	.	scavenged	Atlas-SNP
INSR	3643	hgsc.bcm.edu	37	19	7174667	7174667	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	75	13	67	0	0.173333	0	.	.	none	.	INSR	265	.	NM_000208	exon4	c.G1050A	p.S350S	CGTCACCGAGTCG	.	PASS	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194338424	194338424	+	Missense_Mutation	SNP	G	G	C	rs58679389	bycluster;byfrequency;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	4	4	0	0	1	.	C|0.130;G|0.870	0.130	strong	.	TMEM44	42	.	NM_001166305	exon6	c.C694G	p.R232G	GAGAACGTGAGGG	.	PASS	Atlas-SNP
OR2L2	26246	hgsc.bcm.edu	37	1	248201673	248201673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	187	2	217	0	0.0106952	0	.	.	none	OR2L2,NS,carcinoma,-1,1	OR2L2	115	1	NM_001004686	exon1	c.T104C	p.L35P	TTTTCCTAATGGC	.	scavenged	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	37	20	1629906	1629906	+	Silent	SNP	C	C	T	rs6079967	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	182	5	190	1	0.0274725	0.00526316	C|0.593;T|0.407	0.407	strong	SIRPG,right_upper_lobe,carcinoma,-1,2	SIRPG	61	2	NM_001039508	exon2	c.G222A	p.R74R	TAATTCCCGGCCT	.	scavenged	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122002948	122002948	+	Missense_Mutation	SNP	G	G	A	rs201670662	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	29	7	53	0	0.241379	0	.	.	weak	.	CASR	190	.	NM_001178065	exon7	c.G2177A	p.R726H	TCCACCGCAAGTG	.	PASS	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	37	21	45825049	45825049	+	Missense_Mutation	SNP	G	G	A	rs144022462	alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	55	12	62	0	0.218182	0	G|1.000;T|0.000	.	alt	.	TRPM2	196	.	NM_003307	exon17	c.G2563A	p.G855R	GAGTGCGGGCTGA	.	PASS	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108	18	92	2	0.166667	0.0217391	.	.	weak	BPTF_ENST00000335221,rectum,carcinoma,0,2	BPTF	415	2	NM_182641	exon24	c.T8028C	p.A2676A	ACCAGCTCCTCCA	.	scavenged	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42356300	42356300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	55	15	67	1	0.272727	0.0149254	.	.	none	LRFN5,NS,carcinoma,0,1	LRFN5	269	1	NM_152447	exon3	c.A472C	p.N158H	TATAATAATCTAG	.	scavenged	Atlas-SNP
FN1	2335	hgsc.bcm.edu	37	2	216257886	216257886	+	Silent	SNP	G	G	T	rs61732520	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	100	4	88	0	0.04	0	G|0.994;A|0.006	.	alt	.	FN1	521	.	NM_212482	exon25	c.C3837A	p.T1279T	TGAATCGGTTATA	.	PASS	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55148031	55148031	+	Silent	SNP	T	T	C	rs637515		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	188	4	171	0	0.0212766	0	.	.	weak	LILRB1,NS,carcinoma,+2,1	LILRB1	140	1	NM_001081637	exon14	c.T1740C	p.P580P	TCCTCCTTCCCCA	.	scavenged	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	37	12	53045642	53045642	+	Silent	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108	29	68	0	0.268519	0	.	.	none	KRT2,rectum,carcinoma,0,1	KRT2	94	1	NM_000423	exon1	c.T285C	p.G95G	TCCAAAACCACCT	.	PASS	Atlas-SNP
CCDC74A	90557	hgsc.bcm.edu	37	2	132290242	132290242	+	Missense_Mutation	SNP	G	G	C	rs2599956		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	256	5	268	5	0.0195312	0.0186567	.	.	weak	CCDC74A,NS,carcinoma,0,1	CCDC74A	44	1	NM_138770	exon5	c.G764C	p.G255A	GGGCGGGGGCACA	.	scavenged	Atlas-SNP
LINS	55180	hgsc.bcm.edu	37	15	101113950	101113950	+	Silent	SNP	A	A	G	rs12592868	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	143	3	181	1	0.020979	0.00552486	A|0.609;G|0.391	0.391	strong	LINS,NS,carcinoma,0,1	LINS	62	1	NM_001040616	exon5	c.T1128C	p.S376S	ATCTGGACTAGTG	.	scavenged	Atlas-SNP
HIST1H2BK	85236	hgsc.bcm.edu	37	6	27114569	27114569	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	113	6	111	4	0.0530973	0.036036	.	.	none	HIST1H2BK_ENST00000396891,NS,carcinoma,-2,2	HIST1H2BK	68	2	NM_080593	exon1	c.A9G	p.E3E	CGCTGGTTCCGGC	.	scavenged	Atlas-SNP
FCGR3A	2214	hgsc.bcm.edu	37	1	161518286	161518286	+	Missense_Mutation	SNP	C	C	T	rs428888	bycluster;byfrequency;by2hit2allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	356	19	369	18	0.0533708	0.0487805	C|0.667;T|0.333	0.333	strong	FCGR3A,colon,carcinoma,+2,1	FCGR3A	38	1	NM_000569	exon3	c.G352A	p.D118N	TGTCGTCGACTGT	.	scavenged	Atlas-SNP
CBWD3	445571	hgsc.bcm.edu	37	9	70871836	70871836	+	Splice_Site	SNP	C	C	G	rs76283403		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	723	14	784	9	0.0193638	0.0114796	C|0.500;G|0.500	0.500	weak	CBWD3,rectum,carcinoma,-1,1	CBWD3	10	1	NM_201453	exon5	c.431-1C>G	.	TTTTCACGTGCAG	.	scavenged	Atlas-SNP
POTEF	728378	hgsc.bcm.edu	37	2	130872871	130872871	+	Silent	SNP	C	C	T	rs199770435	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	630	17	670	14	0.0269841	0.0208955	C|0.998;T|0.002	0.002	weak	POTEF,NS,carcinoma,0,5	POTEF	140	5	NM_001099771	exon4	c.G552A	p.G184G	TGAATTCCCATTG	.	scavenged	Atlas-SNP
HS6ST1	9394	hgsc.bcm.edu	37	2	129075797	129075797	+	Missense_Mutation	SNP	A	A	C	rs61732014	byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	62	16	82	16	0.258065	0.195122	A|0.862;C|0.138	0.138	strong	HS6ST1,NS,carcinoma,0,1	HS6ST1	31	1	NM_004807	exon1	c.T341G	p.V114G	CACGGCACCTCGA	.	scavenged	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179605902	179605902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	29	11	25	0	0.37931	0	.	.	none	.	TTN	18412	.	NM_001267550	exon48	c.T12058A	p.S4020T	AGGTGGACTCACC	.	PASS	Atlas-SNP
UPF3A	65110	hgsc.bcm.edu	37	13	115047496	115047496	+	Missense_Mutation	SNP	G	G	C	rs76186578	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	19	3	18	2	0.157895	0.111111	.	.	weak	UPF3A,extremity,malignant_melanoma,0,3	UPF3A	47	3	NM_080687	exon2	c.G208C	p.V70L	CCGCAGGTGGTCA	.	scavenged	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	37	1	248224739	248224739	+	Silent	SNP	A	A	G	rs77641372		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	60	4	115	1	0.0666667	0.00869565	.	.	weak	OR2L3,NS,carcinoma,0,2	OR2L3	97	2	NM_001004687	exon1	c.A756G	p.A252A	CTATGCACCTTTT	.	scavenged	Atlas-SNP
OR51B2	79345	hgsc.bcm.edu	37	11	5345486	5345486	+	Silent	SNP	G	G	A	rs4910750	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	264	4	274	1	0.0151515	0.00364964	G|0.181;A|0.819	0.819	strong	OR51B2,NS,carcinoma,-2,1	OR51B2	69	1	NM_033180	exon1	c.C42T	p.G14G	TGGAAAGCCAGTC	.	scavenged	Atlas-SNP
LRCOL1	100507055	hgsc.bcm.edu	37	12	133181399	133181399	+	Missense_Mutation	SNP	T	T	C	rs11146963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	4	4	0	0	1	.	T|0.274;C|0.726	0.726	strong	.	.	.	.	NM_001195520	exon3	c.A124G	p.R42G	GTCTCCTGCATGG	.	PASS	Atlas-SNP
UBC	7316	hgsc.bcm.edu	37	12	125397358	125397358	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	234	7	245	3	0.0299145	0.0122449	.	.	none	UBC,NS,carcinoma,0,2	UBC	79	2	NM_021009	exon2	c.A960G	p.E320E	CTCCACTTCGAGA	.	scavenged	Atlas-SNP
ZIC4	84107	hgsc.bcm.edu	37	3	147108785	147108785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	52	2	67	0	0.0384615	0	.	.	none	ZIC4,brain,primitive_neuroectodermal_tumour-medulloblastoma,+2,1	ZIC4	174	1	NM_001168378	exon4	c.T1087C	p.C363R	GGCCGCAGTCCGA	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505851	195505851	+	Silent	SNP	T	T	C	rs200522168		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	59	10	55	9	0.169492	0.163636	.	.	weak	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	1505	1	NM_018406	exon2	c.A12600G	p.S4200S	GGATGCTGAGGAA	.	scavenged	Atlas-SNP
PLD1	5337	hgsc.bcm.edu	37	3	171455820	171455820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	172	27	130	1	0.156977	0.00769231	.	.	none	PLD1,NS,carcinoma,0,2	PLD1	134	2	NM_002662	exon2	c.C22T	p.R8W	TTACCCGTGGCTC	.	scavenged	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49724172	49724172	+	Nonsense_Mutation	SNP	C	C	T	rs76936294	bycluster;byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	249	27	270	12	0.108434	0.0444444	C|0.500;T|0.500	0.500	strong	MST1,NS,carcinoma,0,1	MST1	84	1	NM_020998	exon7	c.G792A	p.W264X	GTAGCACCATGGC	.	scavenged	Atlas-SNP
MAGEF1	64110	hgsc.bcm.edu	37	3	184429559	184429559	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	111	17	103	0	0.153153	0	.	.	none	.	MAGEF1	27	.	NM_022149	exon1	c.G51A	p.G17G	CTTCTCCCCCTCG	.	PASS	Atlas-SNP
CRYGN	155051	hgsc.bcm.edu	37	7	151135158	151135158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	58	11	45	0	0.189655	0	.	.	none	.	CRYGN	15	.	NM_144727	exon2	c.A194C	p.E65A	CCGTGCTCCAAGA	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113208155	113208155	+	Missense_Mutation	SNP	G	G	T	rs140985683	bycluster;by1000genomes;alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	93	2	109	0	0.0215054	0	G|0.999;A|0.001	.	alt	SVEP1,NS,carcinoma,0,1	SVEP1	326	1	NM_153366	exon26	c.C4425A	p.N1475K	GCTGCCGTTATCA	.	scavenged	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	rs200244531		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	629	12	755	9	0.0190779	0.0119205	.	.	weak	TPTE2_ENST00000400230,NS,carcinoma,0,1	TPTE2	225	1	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	scavenged	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	37	17	10399327	10399327	+	Silent	SNP	C	C	T	rs149731873	bycluster;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	60	4	73	1	0.0666667	0.0136986	C|0.999;T|0.001	0.001	strong	MYH1,NS,carcinoma,0,1	MYH1	403	1	NM_005963	exon35	c.G5109A	p.R1703R	GATTTTCCTGCTC	.	scavenged	Atlas-SNP
ND6	0	hgsc.bcm.edu	37	MT	14364	14364	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	7	7	0	0	1	.	.	.	none	.	.	.	.	ENST00000361681	exon1	c.C310T	p.L104L	CCCACAGCACCAA	.	PASS	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	37	3	183212058	183212058	+	Missense_Mutation	SNP	T	T	C	rs372112529	alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	78	19	69	0	0.24359	0	.	.	alt	.	KLHL6	100	.	NM_130446	exon5	c.A1159G	p.T387A	GCTGTGTTTCTTT	.	PASS	Atlas-SNP
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324104	39324104	+	Silent	SNP	A	A	G	rs368619075		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	188	8	178	4	0.0425532	0.0224719	.	.	weak	KRTAP4-3,colon,carcinoma,0,1	KRTAP4-3	40	1	NM_033187	exon1	c.T321C	p.S107S	GCAACTAGAAATG	.	scavenged	Atlas-SNP
PRAMEF11	440560	hgsc.bcm.edu	37	1	12888371	12888371	+	Missense_Mutation	SNP	T	T	G	rs77493267		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	310	67	311	50	0.216129	0.160772	T|0.250;G|0.750	0.750	weak	PRAMEF11,NS,other,0,1	PRAMEF11	72	1	NM_001146344	exon2	c.A153C	p.Q51H	AACCCCTTGGGTA	.	scavenged	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	37	1	86249233	86249233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	156	35	123	0	0.224359	0	.	.	none	COL24A1,colon,carcinoma,0,1	COL24A1	202	1	NM_152890	exon51	c.A4230C	p.E1410D	ATCCCCTTCAGGA	.	PASS	Atlas-SNP
FCRL3	115352	hgsc.bcm.edu	37	1	157670256	157670256	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	160	39	127	0	0.24375	0	.	.	none	.	FCRL3	163	.	NM_052939	exon2	c.G24A	p.L8L	CAGGATCAGCAGC	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190878551	190878551	+	Splice_Site	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	227	5	274	4	0.0220264	0.0145985	.	.	none	FRG1,NS,malignant_melanoma,0,1	FRG1	76	1	NM_004477	exon6	c.433-2A>G	.	TCACTTAGGGGAA	.	scavenged	Atlas-SNP
FAM72B	653820	hgsc.bcm.edu	37	1	120846059	120846059	+	Missense_Mutation	SNP	G	G	A	rs17846387		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	529	11	766	6	0.020794	0.0078329	.	.	weak	FAM72B,NS,carcinoma,0,1	FAM72B	10	1	NM_001100910	exon3	c.G295A	p.G99R	AACAACGGACACT	.	scavenged	Atlas-SNP
SETD8	387893	hgsc.bcm.edu	37	12	123875311	123875311	+	Silent	SNP	C	C	T	rs74356260		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	147	6	138	1	0.0408163	0.00724638	.	.	weak	SETD8,NS,carcinoma,0,6	SETD8	35	6	NM_020382	exon3	c.C267T	p.A89A	ATTAGCCGGAATC	.	scavenged	Atlas-SNP
APOBEC3F	200316	hgsc.bcm.edu	37	22	39441197	39441197	+	Silent	SNP	G	G	A	rs200983508	byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	71	2	93	8	0.028169	0.0860215	G|0.998;A|0.002	0.002	strong	APOBEC3F,NS,carcinoma,0,1	APOBEC3F	37	1	NM_145298	exon3	c.G423A	p.G141G	GGCAGGGGCCCGC	.	scavenged	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123937296	123937296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	81	21	77	0	0.259259	0	.	.	none	.	CNTRL	161	.	NM_007018	exon41	c.G6748A	p.A2250T	TTTCAGGCCCAAC	.	PASS	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	37	5	140725547	140725547	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	120	16	152	11	0.133333	0.0723684	.	.	none	PCDHGA3_ENST00000253812,NS,carcinoma,0,1	PCDHGA3	246	1	NM_032011	exon1	c.C1947T	p.H649H	GGACCACGGCCAG	.	scavenged	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327891	16327891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	40	9	27	0	0.225	0	.	.	none	ATXN1,NS,carcinoma,0,1	ATXN1	117	1	NM_001128164	exon7	c.G651T	p.Q217H	CTGCTGCTGCTGC	.	PASS	Atlas-SNP
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907708	12907708	+	Silent	SNP	A	A	G	rs4026149	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	127	20	145	20	0.15748	0.137931	A|0.667;G|0.333	0.333	strong	HNRNPCL1,NS,carcinoma,-1,1	HNRNPCL1	68	1	NM_001013631	exon2	c.T435C	p.R145R	ACGTTGACGTTTC	.	scavenged	Atlas-SNP
JUNB	3726	hgsc.bcm.edu	37	19	12902785	12902785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	69	20	88	0	0.289855	0	.	.	none	.	JUNB	14	.	NM_002229	exon1	c.G200A	p.S67N	GCGGCAGCTACTT	.	PASS	Atlas-SNP
DDIT4L	115265	hgsc.bcm.edu	37	4	101109161	101109161	+	Silent	SNP	G	G	C	rs3749604	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	82	2	118	0	0.0243902	0	G|0.813;C|0.187	0.187	strong	DDIT4L,NS,carcinoma,-1,1	DDIT4L	33	1	NM_145244	exon3	c.C255G	p.T85T	TCTCTGGGTCAGT	.	scavenged	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	71	5	60	0	0.0704225	0	.	.	weak	PRKCSH,caecum,carcinoma,0,1	PRKCSH	55	1	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	PASS	Atlas-SNP
PLIN5	440503	hgsc.bcm.edu	37	19	4529195	4529195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	109	3	114	0	0.0275229	0	.	.	none	PLIN5,NS,carcinoma,0,1	PLIN5	27	1	NM_001013706	exon5	c.G410A	p.R137Q	CAGCGCCGGCCCC	.	scavenged	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	37	5	140180941	140180941	+	Silent	SNP	G	G	A	rs201478898	byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	33	8	41	5	0.242424	0.121951	G|0.926;A|0.074	0.074	strong	PCDHA3_ENST00000522353,NS,haematopoietic_neoplasm,0,2	PCDHA3	396	2	NM_031497	exon1	c.G159A	p.G53G	CCTGGGGCTGGAG	.	scavenged	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152286156	152286156	+	Silent	SNP	G	G	A	rs140941956		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	67	2	63	0	0.0298507	0	G|1.000;A|0.000	0.000	weak	FLG,NS,carcinoma,0,3	FLG	900	3	NM_002016	exon3	c.C1206T	p.R402R	TTGCCCGCGCCCA	.	scavenged	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4228479	4228479	+	Missense_Mutation	SNP	G	G	C	rs199890951		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	7	2	38	2	0.285714	0.0526316	.	.	weak	OTOP1,NS,carcinoma,0,1	OTOP1	118	1	NM_177998	exon1	c.C113G	p.S38C	TCCGGGGACCTCG	.	scavenged	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6085324	6085324	+	Missense_Mutation	SNP	G	G	A	rs61751286	bycluster;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	68	16	99	1	0.235294	0.010101	G|1.000;A|0.000	0.000	strong	VWF,NS,lymphoid_neoplasm,+1,1	VWF	338	1	NM_000552	exon43	c.C7390T	p.R2464C	CCACGCGGAGGCC	.	scavenged	Atlas-SNP
EP300	2033	hgsc.bcm.edu	37	22	41572795	41572795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	93	25	69	0	0.268817	0	.	.	none	.	EP300	367	.	NM_001429	exon31	c.A5080G	p.T1694A	TGTATCACCTGCT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	86	2	68	0	0.0232558	0	.	.	none	MUC4_ENST00000463781,bladder,carcinoma,0,4	MUC4	1505	4	NM_018406	exon2	c.G12679C	p.V4227L	TGGTGACAGGAAG	.	scavenged	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194338423	194338423	+	Missense_Mutation	SNP	C	C	T	rs12695036	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	4	4	0	0	1	.	C|0.567;T|0.433	0.433	strong	.	TMEM44	42	.	NM_001166305	exon6	c.G695A	p.R232H	GGAGAACGTGAGG	.	PASS	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176671860	176671860	+	Silent	SNP	G	G	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	30	4	33	0	0.133333	0	.	.	none	.	PAPPA2	665	.	NM_020318	exon9	c.G3354C	p.G1118G	AGATGGGAAGGTG	.	PASS	Atlas-SNP
NFKBIE	4794	hgsc.bcm.edu	37	6	44227895	44227895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	45	17	42	0	0.377778	0	.	.	none	.	NFKBIE	31	.	NM_004556	exon5	c.T1322C	p.L441P	AGGTGCAGGGGTG	.	PASS	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	37	6	128505735	128505735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	127	10	137	0	0.0787402	0	.	.	none	PTPRK_ENST00000368213,mucosal,malignant_melanoma,-1,2	PTPRK	330	2	NM_001135648	exon7	c.G1004A	p.G335E	CAGGATCCTGATG	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89347228	89347228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	82	24	62	0	0.292683	0	.	.	none	.	ANKRD11	195	.	NM_001256183	exon9	c.C5722T	p.P1908S	CCGGGGGAAGGGC	.	PASS	Atlas-SNP
HIST1H2BG	8339	hgsc.bcm.edu	37	6	26216827	26216827	+	Silent	SNP	G	G	A	rs143774290		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	74	16	96	0	0.216216	0	G|1.000;A|0.000	0.000	weak	.	HIST1H2BG	25	.	NM_003518	exon1	c.C45T	p.S15S	CTTCTTGGAACCC	.	PASS	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	37	10	70520826	70520826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	188	4	189	0	0.0212766	0	.	.	none	CCAR1,NS,carcinoma,0,1	CCAR1	118	1	NM_018237	exon16	c.G1983T	p.Q661H	ATCCCAGTTAATA	.	scavenged	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190878658	190878658	+	Splice_Site	SNP	G	G	A	rs76810924		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	511	10	525	3	0.0195695	0.00571429	G|0.875;A|0.125	0.125	weak	FRG1,right_upper_lobe,carcinoma,0,1	FRG1	76	1	NM_004477	exon6	c.537+1G>A	.	ATCAAGGTAATGA	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513470	195513470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	128	12	105	10	0.09375	0.0952381	.	.	none	MUC4_ENST00000463781,NS,carcinoma,+2,2	MUC4	1505	2	NM_018406	exon2	c.C4981G	p.H1661D	TGGCGTGACCTGT	.	scavenged	Atlas-SNP
BIRC7	79444	hgsc.bcm.edu	37	20	61870941	61870941	+	Missense_Mutation	SNP	G	G	A	rs142521563		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	32	11	30	0	0.34375	0	G|1.000;A|0.000	0.000	weak	BIRC7,colon,carcinoma,0,1	BIRC7	25	1	NM_139317	exon6	c.G881A	p.R294H	GCGTGCGCACCTT	.	PASS	Atlas-SNP
ZKSCAN1	7586	hgsc.bcm.edu	37	7	99631550	99631550	+	Silent	SNP	G	G	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	91	4	70	0	0.043956	0	.	.	none	.	ZKSCAN1	59	.	NM_003439	exon6	c.G1422T	p.S474S	GAGCTCGGACCTC	.	PASS	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	37	12	121891060	121891060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	44	11	66	0	0.25	0	.	.	none	.	KDM2B	218	.	NM_032590	exon13	c.C1822T	p.R608W	GGCGCCGCCGAGC	.	PASS	Atlas-SNP
RARB	5915	hgsc.bcm.edu	37	3	25611289	25611289	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	82	20	102	1	0.243902	0.00980392	.	.	none	RARB_ENST00000404969,rectum,carcinoma,+1,2	RARB	123	2	NM_000965	exon4	c.G489A	p.S163S	GACTTCGAAGCAA	.	scavenged	Atlas-SNP
ATP6V1A	523	hgsc.bcm.edu	37	3	113505224	113505224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	121	3	89	0	0.0247934	0	.	.	none	ATP6V1A,NS,malignant_melanoma,0,1	ATP6V1A	71	1	NM_001690	exon6	c.T710C	p.L237P	ATGCCCTTTTTCC	.	scavenged	Atlas-SNP
OR4D6	219983	hgsc.bcm.edu	37	11	59225155	59225155	+	Missense_Mutation	SNP	C	C	T	rs376910045		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	55	9	64	0	0.163636	0	.	.	weak	OR4D6,colon,carcinoma,-1,1	OR4D6	65	1	NM_001004708	exon1	c.C722T	p.T241M	CGTGCACGTCCCA	.	PASS	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	37	17	29167653	29167653	+	Missense_Mutation	SNP	A	A	C	rs3764421	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	360	5	387	2	0.0138889	0.00516796	A|0.885;C|0.115	0.115	strong	ATAD5,NS,carcinoma,0,1	ATAD5	150	1	NM_024857	exon4	c.A2095C	p.N699H	TCAAAAAACATAT	.	scavenged	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	21	4	32	0	0.190476	0	.	.	none	MLLT3,NS,carcinoma,0,4	MLLT3	125	4	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG	.	scavenged	Atlas-SNP
TSC22D2	9819	hgsc.bcm.edu	37	3	150176367	150176367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	335	4	284	1	0.0119403	0.00352113	.	.	none	TSC22D2,NS,carcinoma,0,1	TSC22D2	42	1	NM_014779	exon4	c.G2287T	p.A763S	GTGATAGCACAGC	.	scavenged	Atlas-SNP
C16orf93	90835	hgsc.bcm.edu	37	16	30770512	30770512	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	51	12	38	0	0.235294	0	.	.	none	.	C16orf93	33	.	NM_001014979	exon7	c.A714G	p.P238P	ACTCTCTGGCCAC	.	PASS	Atlas-SNP
SLCO1B1	10599	hgsc.bcm.edu	37	12	21331570	21331570	+	Missense_Mutation	SNP	G	G	T	rs142101690	alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	291	5	314	0	0.0171821	0	G|1.000;A|0.000	.	alt	SLCO1B1,scalp,carcinoma,+1,1	SLCO1B1	151	1	NM_006446	exon6	c.G542T	p.R181L	TGCTTCGTGGAAT	.	scavenged	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	37	9	8518055	8518055	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	140	3	174	0	0.0214286	0	.	.	none	PTPRD,scalp,malignant_melanoma,+1,1	PTPRD	1348	1	NM_130392	exon10	c.G1336T	p.G446X	TCTGTCCATTTGG	.	scavenged	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70332320	70332320	+	Silent	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	162	2	174	0	0.0123457	0	.	.	none	TET1_ENST00000373644,NS,carcinoma,+1,1	TET1	255	1	NM_030625	exon2	c.A225G	p.T75T	TCTGACAAGAGCT	.	scavenged	Atlas-SNP
CCDC12	151903	hgsc.bcm.edu	37	3	46965118	46965118	+	Silent	SNP	G	G	T	rs369626562	alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	125	2	121	0	0.016	0	.	.	alt	CCDC12,NS,carcinoma,-2,1	CCDC12	9	1	NM_144716	exon5	c.G324A	p.R108R	GGGCTCGGGCTTG	.	scavenged	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	37	22	26242205	26242205	+	Silent	SNP	C	C	T	rs375428629		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	48	11	48	0	0.229167	0	.	.	weak	.	MYO18B	322	.	NM_032608	exon19	c.C3507T	p.A1169A	CCTTGCCGCGGTG	.	PASS	Atlas-SNP
PODN	127435	hgsc.bcm.edu	37	1	53544260	53544260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	84	24	81	0	0.285714	0	.	.	none	.	PODN	86	.	NM_153703	exon8	c.C1222T	p.R408W	CTCAAGCGGTTGC	.	PASS	Atlas-SNP
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	bycluster;byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	155	46	112	9	0.296774	0.0803571	A|0.046;T|0.954	0.046	strong	KRTAP4-3,NS,carcinoma,0,1	KRTAP4-3	40	1	NM_033187	exon1	c.A92T	p.Q31L	GTGGTCTGGCAGC	.	scavenged	Atlas-SNP
MTHFD1	4522	hgsc.bcm.edu	37	14	64882380	64882380	+	Missense_Mutation	SNP	A	A	G	rs1950902	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	117	3	113	0	0.025641	0	G|0.827;N|0.000	0.827	strong	MTHFD1,tonsil,carcinoma,0,1	MTHFD1	61	1	NM_005956	exon6	c.A401G	p.K134R	CTGGGAAACTTGC	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017483	1017483	+	Missense_Mutation	SNP	T	T	G	rs79986665	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	261	47	285	43	0.180077	0.150877	T|0.500;G|0.500	0.500	weak	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.A5318C	p.H1773P	CTGGTGTGGTTGG	.	scavenged	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	37	17	35913676	35913676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	73	7	88	0	0.0958904	0	.	.	none	.	SYNRG	101	.	NM_007247	exon14	c.G2149A	p.E717K	CTTCCTCTTTAAG	.	PASS	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	37	4	57881715	57881715	+	Silent	SNP	G	G	A	rs1713982	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	158	2	179	1	0.0126582	0.00558659	G|0.634;A|0.366	0.366	strong	POLR2B,colon,carcinoma,0,1	POLR2B	108	1	NM_000938	exon14	c.G1848A	p.T616T	CTATACGGATGCA	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017575	1017575	+	Silent	SNP	C	C	T	rs76222533	bycluster;byfrequency	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	258	22	247	31	0.0852713	0.125506	C|0.500;T|0.500	0.500	strong	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	408	2	NM_005961	exon31	c.G5226A	p.T1742T	TTTGGCCGTGCTA	.	scavenged	Atlas-SNP
CERS6	253782	hgsc.bcm.edu	37	2	169417787	169417787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	73	20	96	0	0.273973	0	.	.	none	LASS6,colon,carcinoma,+1,1	.	.	1	NM_001256126	exon3	c.G362A	p.R121H	AAAGACGCAATCA	.	PASS	Atlas-SNP
GPR32	2854	hgsc.bcm.edu	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	58	7	64	3	0.12069	0.046875	.	.	weak	GPR32,NS,carcinoma,0,5	GPR32	68	5	NM_001506	exon1	c.A994C	p.T332P	TCTTTGACTTCTG	.	scavenged	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170627883	170627883	+	Missense_Mutation	SNP	T	T	G	rs143059540	bycluster;byfrequency;alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	155	6	152	3	0.0387097	0.0197368	T|1.000;C|0.000	.	alt	FAM120B,NS,carcinoma,0,2	FAM120B	108	2	NM_032448	exon2	c.T1405G	p.S469A	CCTGAATCCAGGC	.	scavenged	Atlas-SNP
HSPD1	3329	hgsc.bcm.edu	37	2	198363534	198363534	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	377	4	393	3	0.0106101	0.00763359	.	.	none	HSPD1_ENST00000426480,NS,haematopoietic_neoplasm,0,3	HSPD1	68	3	NM_002156	exon2	c.G39A	p.P13P	GGACACCGGTCTC	.	scavenged	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547093	+	Silent	SNP	A	A	G	rs28513925	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	75	3	56	1	0.04	0.0178571	A|0.500;G|0.500	0.500	weak	EP400,NS,carcinoma,0,15	EP400	370	15	NM_015409	exon47	c.A8181G	p.Q2727Q	GCAACAACAGCAG	.	scavenged	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170627869	170627869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	153	9	149	4	0.0588235	0.0268456	.	.	none	FAM120B,NS,carcinoma,+1,1	FAM120B	108	1	NM_032448	exon2	c.A1391G	p.Y464C	CCATGTATACAGG	.	scavenged	Atlas-SNP
