Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
C10orf71	118461	hgsc.bcm.edu	37	10	50534484	50534486	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	19	19	0	.	1.000	.	.	.	none	.	C10orf71	179	.	NM_001135196	exon3	c.3893_3895del	p.1298_1299del	.	.	PASS	Pindel,Atlas-Indel
STAT3	6774	hgsc.bcm.edu	37	17	40475061	40475063	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	16	16	0	.	1.000	.	.	.	none	.	STAT3	268	.	NM_003150	exon20	c.1848_1850del	p.616_617del	.	.	PASS	Pindel,Atlas-Indel
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305775	+	In_Frame_Ins	INS	-	-	TGGCAGCAGCTGGGG	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	45	25	46	0	0.555556	0	.	.	none	KRTAP4-5,NS,carcinoma,0,1	KRTAP4-5	34	1	NM_033188	exon1	c.246_247insCCCCAGCTGCTGCCA	p.Q82delinsHPSCCQ	.	.	PASS	Atlas-Indel
TBP	6908	hgsc.bcm.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168	by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	29	14	53	0	0.482759	0	-|0.138;CAG|0.862	0.862	strong	TBP,NS,carcinoma,0,5	TBP	58	5	NM_003194	exon3	c.189_190insCAG	p.Q63delinsQQ	.	.	PASS	Atlas-Indel
DMKN	93099	hgsc.bcm.edu	37	19	36002421	36002422	+	In_Frame_Ins	INS	-	-	CTGCTGCTG	rs71940230	alternate_allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	47	14	51	0	0.297872	0	.	.	alt	DMKN,colon,carcinoma,0,1	DMKN	116	1	NM_033317	exon5	c.810_811insCAGCAGCAG	p.G270delinsGSSS	.	.	PASS	Atlas-Indel
DPP7	29952	hgsc.bcm.edu	37	9	140006642	140006644	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	24	24	0	.	1.000	.	.	.	none	.	DPP7	22	.	NM_013379	exon9	c.971_973del	p.324_325del	.	.	PASS	Pindel
CREBBP	1387	hgsc.bcm.edu	37	16	3779057	3779057	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	19	19	0	.	1.000	.	.	.	none	.	CREBBP	546	.	NM_004380	exon31	c.5992delG	p.V1998X	.	.	PASS	Pindel
AP1G1	164	hgsc.bcm.edu	37	16	71808467	71808468	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	58	58	0	.	1.000	.	.	.	none	.	AP1G1	83	.	NM_001030007	exon3	c.230_231insC	p.Q77fs	.	.	PASS	Pindel
C7orf55-LUC7L2	100996928	hgsc.bcm.edu	37	7	139094365	139094366	+	Frame_Shift_Del	DEL	AG	AG	-	rs368249579		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	12	12	0	.	1.000	.	.	.	weak	LUC7L2,colon,carcinoma,+1,1	.	.	1	NM_001244584	exon8	c.941_942del	p.314_314del	.	.	PASS	Pindel
CTDSPL2	51496	hgsc.bcm.edu	37	15	44791936	44791937	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	32	32	0	.	1.000	.	.	.	none	.	CTDSPL2	31	.	NM_016396	exon8	c.894_895insGT	p.L298fs	.	.	PASS	Pindel
EPYC	1833	hgsc.bcm.edu	37	12	91365657	91365657	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	29	29	0	.	1.000	.	.	.	none	.	EPYC	35	.	NM_004950	exon5	c.623delA	p.E208fs	.	.	PASS	Pindel
HGFAC	3083	hgsc.bcm.edu	37	4	3449218	3449219	+	Splice_Site	INS	-	-	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	24	24	0	.	1.000	.	.	.	none	.	HGFAC	69	.	NM_001528	exon11	c.1356-1->C	.	.	.	PASS	Pindel
SRRT	51593	hgsc.bcm.edu	37	7	100482040	100482042	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	10	10	0	.	1.000	.	.	.	none	.	SRRT	108	.	NM_001128853	exon7	c.808_810del	p.270_270del	.	.	PASS	Pindel
ATRX	546	hgsc.bcm.edu	37	X	76778785	76778787	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	10	10	0	.	1.000	.	.	.	none	.	ATRX	833	.	NM_000489	exon31	c.6793_6795del	p.2265_2265del	.	.	PASS	Pindel
B2M	567	hgsc.bcm.edu	37	15	45007714	45007714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	67	35	106	1	0.522388	0.00943396	.	.	none	B2M,bladder,carcinoma,+1,1	B2M	99	1	NM_004048	exon2	c.A161T	p.D54V	CATCCGACATTGA	.	scavenged	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140563728	140563728	+	Missense_Mutation	SNP	A	A	G	rs2697532	bycluster;byfrequency;by2hit2allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	35	7	41	2	0.2	0.0487805	A|0.667;G|0.333	0.333	strong	PCDHB16,NS,carcinoma,0,1	PCDHB16	159	1	NM_020957	exon1	c.A1594G	p.S532G	CGCGTGAGCGCCA	.	scavenged	Atlas-SNP
PDHA2	5161	hgsc.bcm.edu	37	4	96761963	96761963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	47	19	69	0	0.404255	0	.	.	none	.	PDHA2	118	.	NM_005390	exon1	c.A662G	p.E221G	TCTGTGAGAATAA	.	PASS	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	37	19	5144411	5144411	+	Silent	SNP	T	T	C	rs10408767	bycluster;by2hit2allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	48	8	65	4	0.166667	0.0615385	T|1.000;|0.000	.	weak	KDM4B,rectum,carcinoma,0,6	KDM4B	120	6	NM_015015	exon20	c.T2889C	p.P963P	GTACCCTGAGAGC	.	scavenged	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	37	3	196530022	196530022	+	Silent	SNP	C	C	T	rs115224945	bycluster;byfrequency;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	66	9	44	2	0.136364	0.0454545	C|0.986;T|0.015	0.015	strong	PAK2_ENST00000327134,rectum,carcinoma,0,2	PAK2	113	2	NM_002577	exon4	c.C423T	p.S141S	TCTGAGCTTTACT	.	scavenged	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910557	29910557	+	Missense_Mutation	SNP	T	T	C	rs1136659	bycluster;byfrequency;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	129	5	125	2	0.0387597	0.016	A|0.086;T|0.914	.	strong	HLA-A,NS,lymphoid_neoplasm,-1,1	HLA-A	89	1	NM_001242758	exon2	c.T97C	p.F33L	TATTTCTTCACAT	.	scavenged	Atlas-SNP
NTM	50863	hgsc.bcm.edu	37	11	132016345	132016345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	116	41	110	0	0.353448	0	.	.	none	.	NTM	253	.	NM_001144059	exon2	c.T337A	p.Y113N	GGCCCTTACACCT	.	PASS	Atlas-SNP
ZYG11B	79699	hgsc.bcm.edu	37	1	53287248	53287248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	210	6	208	0	0.0285714	0	.	.	none	ZYG11B,NS,carcinoma,-1,1	ZYG11B	61	1	NM_024646	exon14	c.C2182T	p.R728C	ATTGTGCGCCATG	.	scavenged	Atlas-SNP
SBSPON	157869	hgsc.bcm.edu	37	8	73993379	73993379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	170	59	151	1	0.347059	0.00662252	.	.	none	C8orf84,NS,carcinoma,-1,1	.	.	1	NM_153225	exon2	c.G284A	p.R95H	CGCACACGGGTTG	.	scavenged	Atlas-SNP
CHP1	11261	hgsc.bcm.edu	37	15	41523608	41523608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	100	3	119	0	0.03	0	.	.	none	CHP,NS,carcinoma,0,1	.	.	1	NM_007236	exon1	c.C28T	p.R10W	TTACTGCGGGACG	.	scavenged	Atlas-SNP
TSPAN31	6302	hgsc.bcm.edu	37	12	58140844	58140844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	164	64	130	0	0.390244	0	.	.	none	.	TSPAN31	20	.	NM_005981	exon5	c.A488C	p.K163T	GAGAAAAGTTTCT	.	PASS	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	37	19	6772991	6772991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	95	3	83	0	0.0315789	0	.	.	none	VAV1,NS,carcinoma,+1,1	VAV1	140	1	NM_005428	exon1	c.G173T	p.R58L	ACCTGCGTGAGGT	.	scavenged	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76567366	76567366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	157	64	127	0	0.407643	0	.	.	none	.	DNAH17	347	.	NM_173628	exon5	c.C827T	p.T276I	CCTTCAGTGACGT	.	PASS	Atlas-SNP
IRF8	3394	hgsc.bcm.edu	37	16	85936784	85936784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	88	69	75	0	0.784091	0	.	.	none	IRF8,lymph_node,lymphoid_neoplasm,0,1	IRF8	65	1	NM_002163	exon2	c.T163G	p.S55A	GATGCCTCCATTT	.	PASS	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	37	22	38119859	38119859	+	Silent	SNP	C	C	T	rs66505048	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	212	3	207	1	0.0141509	0.00483092	C|0.500;T|0.500	0.500	strong	TRIOBP_ENST00000344404,NS,carcinoma,0,8	TRIOBP	262	8	NM_001039141	exon7	c.C1296T	p.C432C	ATCCTGCGCCCAG	.	scavenged	Atlas-SNP
HLA-G	3135	hgsc.bcm.edu	37	6	29797436	29797436	+	Silent	SNP	T	T	C	rs74547057	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	140	12	94	1	0.0857143	0.0106383	T|0.985;C|0.015	0.015	strong	HLA-G,NS,carcinoma,0,1	HLA-G	90	1	NM_002127	exon5	c.T861C	p.H287H	GCAGCATGAGGGG	.	scavenged	Atlas-SNP
EFHD1	80303	hgsc.bcm.edu	37	2	233546429	233546429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	45	13	42	0	0.288889	0	.	.	none	.	EFHD1	28	.	NM_025202	exon4	c.G720T	p.X240Y	TACATAGTCCTGC	.	PASS	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55147988	55147988	+	Missense_Mutation	SNP	A	A	C	rs77680604		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	211	20	199	7	0.0947867	0.0351759	.	.	weak	LILRB1,NS,carcinoma,+1,3	LILRB1	140	3	NM_001081637	exon14	c.A1697C	p.E566A	ATGCCGAGGTGAA	.	scavenged	Atlas-SNP
PARP4	143	hgsc.bcm.edu	37	13	25060323	25060323	+	Silent	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	498	5	499	1	0.0100402	0.00200401	.	.	none	PARP4,rectum,carcinoma,0,1	PARP4	142	1	NM_006437	exon11	c.C1335A	p.I445I	TCCCACGATGTTT	.	scavenged	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1016770	1016770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	534	14	562	8	0.0262172	0.0142349	.	.	none	MUC6_ENST00000421673,extremity,malignant_melanoma,0,1	MUC6	408	1	NM_005961	exon31	c.C6031T	p.P2011S	AGAAAGGTGGAAC	.	scavenged	Atlas-SNP
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	7	4	6	0	0.571429	0	A|0.808;G|0.192	0.192	strong	.	PPP1R12C	46	.	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	PASS	Atlas-SNP
KIR3DL2	3812	hgsc.bcm.edu	37	19	55367311	55367311	+	Missense_Mutation	SNP	G	G	A	rs201726108	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	33	23	42	19	0.69697	0.452381	G|0.910;A|0.091	0.091	strong	KIR3DL2,NS,carcinoma,0,1	KIR3DL2	55	1	NM_001242867	exon5	c.G893A	p.R298H	CTTTCCGTGCCCT	.	scavenged	Atlas-SNP
OR10C1	442194	hgsc.bcm.edu	37	6	29407999	29407999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	74	28	58	0	0.378378	0	.	.	none	.	OR10C1	58	.	NM_013941	exon1	c.G207C	p.E69D	CTTGGAGATTGGC	.	PASS	Atlas-SNP
CGRRF1	10668	hgsc.bcm.edu	37	14	54997723	54997723	+	Silent	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	292	3	318	0	0.010274	0	.	.	none	CGRRF1,caecum,carcinoma,0,2	CGRRF1	30	2	NM_006568	exon4	c.G525T	p.A175A	GGTAGCGCTATTG	.	scavenged	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	37	X	18671625	18671625	+	Silent	SNP	C	C	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	46	13	44	0	0.282609	0	.	.	none	.	CDKL5	124	.	NM_003159	exon21	c.C3054G	p.L1018L	TGCGCTCCTGACA	.	PASS	Atlas-SNP
ZNF717	100131827	hgsc.bcm.edu	37	3	75790797	75790797	+	Missense_Mutation	SNP	C	C	T	rs147946451	bycluster;byfrequency;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	15	5	8	1	0.333333	0.125	C|0.753;T|0.247	0.247	strong	ZNF717,NS,malignant_melanoma,0,1	ZNF717	160	1	NM_001128223	exon3	c.G148A	p.V50M	GCATCACGTCCCT	.	scavenged	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	37	6	31238010	31238010	+	Missense_Mutation	SNP	T	T	G	rs1131015	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	58	46	81	20	0.793103	0.246914	T|0.429;G|0.571	0.571	strong	HLA-C_ENST00000383329,colon,carcinoma,+1,2	HLA-C	92	2	NM_002117	exon4	c.A872C	p.Q291P	GGCTCTTGCAGCC	.	scavenged	Atlas-SNP
RFX1	5989	hgsc.bcm.edu	37	19	14074787	14074787	+	Silent	SNP	C	C	T	rs137952654	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	13	9	15	3	0.692308	0.2	C|0.996;T|0.004	0.004	strong	RFX1,NS,carcinoma,0,1	RFX1	63	1	NM_002918	exon17	c.G2244A	p.L748L	GCGCCGCAGTGTC	.	scavenged	Atlas-SNP
DUSP15	128853	hgsc.bcm.edu	37	20	30449325	30449325	+	Missense_Mutation	SNP	C	C	G	rs947310	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	6	6	3	0	1	0	C|0.640;G|0.360	0.360	strong	.	DUSP15	28	.	NM_080611	exon7	c.G589C	p.V197L	GCTGCACGGTTCC	.	PASS	Atlas-SNP
MOS	4342	hgsc.bcm.edu	37	8	57026520	57026520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	112	33	144	0	0.294643	0	.	.	none	.	MOS	63	.	NM_005372	exon1	c.C22T	p.R8C	AGGGGCGTAGGGC	.	PASS	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33493201	33493201	+	Missense_Mutation	SNP	C	C	T	rs201601538	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	133	10	111	4	0.075188	0.036036	C|0.929;T|0.070	0.070	strong	RHPN2,caecum,carcinoma,0,17	RHPN2	107	17	NM_033103	exon9	c.G1057A	p.A353T	GGGCCGCGTAGTG	.	scavenged	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	37	5	176638303	176638303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	242	3	193	0	0.0123967	0	.	.	none	NSD1_ENST00000439151,colon,carcinoma,0,2	NSD1	416	2	NM_022455	exon5	c.A2903G	p.K968R	AGAAAAAGGGAGA	.	scavenged	Atlas-SNP
TNFRSF10C	8794	hgsc.bcm.edu	37	8	22974315	22974315	+	Missense_Mutation	SNP	A	A	C	rs61736405	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	108	4	132	3	0.037037	0.0227273	A|0.013;C|0.987	0.987	weak	TNFRSF10C,trunk,malignant_melanoma,0,1	TNFRSF10C	30	1	NM_003841	exon5	c.A551C	p.N184T	CAATGAACACCAG	.	scavenged	Atlas-SNP
TMEM178B	100507421	hgsc.bcm.edu	37	7	141137460	141137460	+	Silent	SNP	C	C	T	rs13233459	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	4	4	0	0	1	.	C|0.785;T|0.215	0.215	strong	.	.	.	.	NM_001195278	exon3	c.C549T	p.L183L	CATCCTCTTTGGC	.	PASS	Atlas-SNP
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102	bycluster;byhapmap;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	6	6	0	0	1	.	G|0.000;C|1.000	1.000	strong	.	CTGF	36	.	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	PASS	Atlas-SNP
EPHX2	2053	hgsc.bcm.edu	37	8	27382956	27382956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	154	55	115	0	0.357143	0	.	.	none	EPHX2,NS,carcinoma,-1,1	EPHX2	57	1	NM_001979	exon12	c.C1136T	p.P379L	CCAACCCAGTATT	.	PASS	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	37	1	26608885	26608885	+	Missense_Mutation	SNP	C	C	T	rs201454352	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	39	8	32	3	0.205128	0.09375	A|0.009;C|0.939;T|0.052	0.052	strong	UBXN11,NS,carcinoma,0,2	UBXN11	54	2	NM_183008	exon16	c.G1468A	p.G490S	CGGGACCGGGACC	.	scavenged	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G	rs41559716	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	150	14	184	3	0.0933333	0.0163043	A|0.979;G|0.021	0.021	strong	HLA-A,bladder,carcinoma,0,8	HLA-A	89	8	NM_001242758	exon2	c.A233G	p.Q78R	TAGAGCAGGAGGG	.	scavenged	Atlas-SNP
B2M	567	hgsc.bcm.edu	37	15	45007809	45007809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	98	56	147	1	0.571429	0.00680272	.	.	none	B2M,NS,lymphoid_neoplasm,-2,2	B2M	99	2	NM_004048	exon2	c.T256G	p.Y86D	CTCTTGTACTACA	.	scavenged	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124175525	124175525	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	174	51	174	0	0.293103	0	.	.	none	.	KALRN	556	.	NM_003947	exon23	c.C3798T	p.D1266D	GCGGGACGCCAAC	.	PASS	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187559050	187559050	+	Silent	SNP	A	A	G	rs2370705	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	66	8	55	1	0.121212	0.0181818	A|0.462;G|0.538	0.538	strong	FAM171B,colon,carcinoma,0,2	FAM171B	146	2	NM_177454	exon1	c.A150G	p.Q50Q	GCAGCAACAACAA	.	scavenged	Atlas-SNP
FAM21B	55747	hgsc.bcm.edu	37	10	47909792	47909792	+	Missense_Mutation	SNP	C	C	T	rs201373575	byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	382	5	379	5	0.013089	0.0131926	C|0.949;T|0.051	0.051	strong	FAM21B_ENST00000358474,NS,carcinoma,0,2	FAM21B	31	2	NM_018232	exon11	c.C889T	p.R297W	CAGGATCGGCAAG	.	scavenged	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50746164	50746164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	213	18	249	18	0.084507	0.0722892	.	.	none	FAM186A_ENST00000327337,NS,carcinoma,0,1	FAM186A	181	1	NM_001145475	exon4	c.T4451C	p.I1484T	GGAGGGATGAGAG	.	scavenged	Atlas-SNP
PPP2CA	5515	hgsc.bcm.edu	37	5	133561476	133561476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	37	17	15	0	0.459459	0	.	.	none	.	PPP2CA	29	.	NM_002715	exon1	c.C77T	p.S26F	ACCTGGGACTCGG	.	PASS	Atlas-SNP
MEGF9	1955	hgsc.bcm.edu	37	9	123367753	123367753	+	Silent	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	202	74	205	0	0.366337	0	.	.	none	.	MEGF9	33	.	NM_001080497	exon6	c.A1524G	p.V508V	CCATGATACATCA	.	PASS	Atlas-SNP
IQCK	124152	hgsc.bcm.edu	37	16	19800169	19800169	+	Silent	SNP	G	G	T	rs143956012	byfrequency;alternate_allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	92	3	81	0	0.0326087	0	G|0.999;A|0.001	.	alt	IQCK,colon,carcinoma,0,1	IQCK	35	1	NM_153208	exon8	c.G615T	p.P205P	ACGGCCGCCAATC	.	scavenged	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33493200	33493200	+	Missense_Mutation	SNP	G	G	A	rs200623446	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	132	11	112	4	0.0833333	0.0357143	G|0.935;A|0.065	0.065	strong	RHPN2,caecum,carcinoma,-1,17	RHPN2	107	17	NM_033103	exon9	c.C1058T	p.A353V	AGGGCCGCGTAGT	.	scavenged	Atlas-SNP
NBPF14	25832	hgsc.bcm.edu	37	1	148010926	148010926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	401	4	420	0	0.00997506	0	.	.	none	NBPF14,NS,lymphoid_neoplasm,+1,1	NBPF14	107	1	NM_015383	exon14	c.A1696G	p.I566V	CCAATATGTAAAA	.	scavenged	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50746158	50746158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	213	8	235	4	0.0375587	0.0170213	.	.	none	FAM186A_ENST00000327337,extremity,malignant_melanoma,0,2	FAM186A	181	2	NM_001145475	exon4	c.C4457A	p.P1486Q	GCCTGCGGAGGGA	.	scavenged	Atlas-SNP
HLA-G	3135	hgsc.bcm.edu	37	6	29797406	29797406	+	Silent	SNP	G	G	A	rs79264452		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	130	12	100	1	0.0923077	0.01	.	.	weak	HLA-G,NS,carcinoma,0,1	HLA-G	90	1	NM_002127	exon5	c.G831A	p.E277E	TGGAGAGGAGCAG	.	scavenged	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144857010	144857010	+	Missense_Mutation	SNP	T	T	C	rs3853916	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	1127	17	1125	8	0.0150843	0.00711111	.	.	weak	PDE4DIP,NS,carcinoma,0,1	PDE4DIP	817	1	NM_014644	exon40	c.A6475G	p.T2159A	GAGGGGTCTTCAT	.	scavenged	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	37	19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	rs150792548	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	92	4	114	2	0.0434783	0.0175439	A|0.002;C|0.002;G|0.995	0.002	strong	ZNF285,NS,carcinoma,+1,2	ZNF285	86	2	NM_152354	exon4	c.C1397G	p.A466G	CTATACGCAAAAT	.	scavenged	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	37	18	25583075	25583075	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	107	41	148	1	0.383178	0.00675676	.	.	none	CDH2,right_upper_lobe,carcinoma,-1,2	CDH2	194	2	NM_001792	exon7	c.G906A	p.G302G	CAACATCCCATTG	.	scavenged	Atlas-SNP
UPF3A	65110	hgsc.bcm.edu	37	13	115047496	115047496	+	Missense_Mutation	SNP	G	G	C	rs76186578	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	34	7	29	2	0.205882	0.0689655	.	.	weak	UPF3A,extremity,malignant_melanoma,0,3	UPF3A	47	3	NM_080687	exon2	c.G208C	p.V70L	CCGCAGGTGGTCA	.	scavenged	Atlas-SNP
AGGF1	55109	hgsc.bcm.edu	37	5	76332463	76332463	+	Missense_Mutation	SNP	C	C	A	rs78273685	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	167	5	165	1	0.0299401	0.00606061	A|0.001;C|0.999	0.001	weak	AGGF1,NS,carcinoma,0,1	AGGF1	71	1	NM_018046	exon4	c.C599A	p.A200E	CAGAAGCGGCTGT	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515257	195515257	+	Missense_Mutation	SNP	G	G	T	rs71187744	alternate_allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	82	6	99	3	0.0731707	0.030303	G|0.500;A|0.500	.	alt	MUC4_ENST00000463781,NS,carcinoma,0,3	MUC4	1505	3	NM_018406	exon2	c.C3194A	p.A1065E	GTGGATGCTGAGG	.	scavenged	Atlas-SNP
STK3	6788	hgsc.bcm.edu	37	8	99608261	99608261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	121	3	128	0	0.0247934	0	.	.	none	STK3,NS,carcinoma,+1,1	STK3	47	1	NM_001256312	exon9	c.A905G	p.Q302R	CTGACCTGTAAAA	.	scavenged	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	37	3	196509544	196509544	+	Silent	SNP	T	T	C	rs79361419	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	237	9	220	1	0.0379747	0.00454545	T|0.994;C|0.006	0.006	strong	PAK2_ENST00000327134,NS,carcinoma,0,4	PAK2	113	4	NM_002577	exon2	c.T27C	p.D9D	GGAAGATAAGCCT	.	scavenged	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910609	29910609	+	Missense_Mutation	SNP	G	G	T	rs199474372	alternate_allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	200	107	174	0	0.535	0	.	.	alt	.	HLA-A	89	.	NM_001242758	exon2	c.G149T	p.G50V	CCGTGGGCTACGT	.	PASS	Atlas-SNP
CIDEB	27141	hgsc.bcm.edu	37	14	24775219	24775219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	65	23	60	0	0.353846	0	.	.	none	.	CIDEB	17	.	NM_014430	exon6	c.C461T	p.A154V	AATGTGGCTTTGA	.	PASS	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	24	2	17	1	0.0833333	0.0588235	.	.	none	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2	128	2	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	scavenged	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1092890	1092890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	77	3	78	1	0.038961	0.0128205	.	.	none	MUC2_ENST00000441003,NS,carcinoma,-1,2	MUC2	614	2	NM_002457	exon30	c.C4709T	p.T1570I	CGGTGACCCCAAC	.	scavenged	Atlas-SNP
RNASE4	6038	hgsc.bcm.edu	37	14	21167775	21167775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	34	8	36	0	0.235294	0	.	.	none	RNASE4,caecum,carcinoma,+1,2	RNASE4	18	2	NM_002937	exon2	c.G245A	p.R82H	ACATTCGTAGTAT	.	PASS	Atlas-SNP
MARCKSL1	65108	hgsc.bcm.edu	37	1	32800454	32800454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	48	13	42	0	0.270833	0	.	.	none	.	MARCKSL1	17	.	NM_023009	exon2	c.A332T	p.E111V	CCACCCTCCTTCC	.	PASS	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	43	4	49	0	0.0930233	0	.	.	none	NCOA6,NS,carcinoma,0,18	NCOA6	219	18	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	PASS	Atlas-SNP
RFPL3	10738	hgsc.bcm.edu	37	22	32756576	32756576	+	Missense_Mutation	SNP	A	A	C	rs199572344		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	235	13	217	4	0.0553191	0.0184332	A|0.999;C|0.001	0.001	weak	RFPL3_ENST00000249007,NS,carcinoma,0,2	RFPL3	91	2	NM_001098535	exon2	c.A711C	p.L237F	CCTCTTAGTAGAC	.	scavenged	Atlas-SNP
RASSF9	9182	hgsc.bcm.edu	37	12	86198771	86198771	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	113	45	133	0	0.39823	0	.	.	none	.	RASSF9	100	.	NM_005447	exon2	c.C1017T	p.I339I	TTTCTGGATGCCA	.	PASS	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	37	12	1993483	1993483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	78	28	71	0	0.358974	0	.	.	none	.	CACNA2D4	220	.	NM_172364	exon12	c.G1277A	p.R426Q	AAAACTCGGACCT	.	PASS	Atlas-SNP
ZNF709	163051	hgsc.bcm.edu	37	19	12577645	12577645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	50	11	78	0	0.22	0	.	.	none	.	ZNF709	80	.	NM_152601	exon2	c.A23G	p.D8G	GCCACATCCTCAA	.	PASS	Atlas-SNP
HELT	391723	hgsc.bcm.edu	37	4	185941741	185941741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	21	11	31	0	0.52381	0	.	.	none	.	HELT	34	.	NM_001029887	exon4	c.G799A	p.A267T	CCTGGCGCGGCCC	.	PASS	Atlas-SNP
ZC3H4	23211	hgsc.bcm.edu	37	19	47572412	47572412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	35	2	45	0	0.0571429	0	.	.	none	ZC3H4,colon,carcinoma,0,1	ZC3H4	96	1	NM_015168	exon14	c.G2335C	p.E779Q	CCTCCTCCTGCTG	.	scavenged	Atlas-SNP
GGT1	2678	hgsc.bcm.edu	37	22	25023419	25023419	+	Silent	SNP	C	C	T	rs202087650	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	223	14	241	17	0.0627803	0.0705394	C|0.989;T|0.011	0.011	strong	GGT1,NS,carcinoma,0,2	GGT1	68	2	NM_013430	exon12	c.C1041T	p.S347S	GACCTCCGAGTTC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	98	5	82	5	0.0510204	0.0609756	.	.	none	MUC4_ENST00000463781,bladder,carcinoma,0,4	MUC4	1505	4	NM_018406	exon2	c.G12679C	p.V4227L	TGGTGACAGGAAG	.	scavenged	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	37	3	113380105	113380105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	189	2	171	0	0.010582	0	.	.	none	KIAA2018,NS,carcinoma,+2,1	KIAA2018	180	1	NM_001009899	exon7	c.C424A	p.Q142K	GAACCTGGTCACT	.	scavenged	Atlas-SNP
VPRBP	9730	hgsc.bcm.edu	37	3	51497147	51497147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	100	38	83	1	0.38	0.0120482	.	.	none	VPRBP,colon,carcinoma,+1,1	VPRBP	107	1	NM_014703	exon6	c.G358A	p.V120I	AGACGACAGCAGT	.	scavenged	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	37	20	50408196	50408196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	29	8	41	0	0.275862	0	.	.	none	.	SALL4	168	.	NM_020436	exon2	c.A826C	p.S276R	TCTGGCTGAGCAA	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093296	1093296	+	Silent	SNP	T	T	C	rs56068864		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	61	12	51	6	0.196721	0.117647	.	.	weak	MUC2_ENST00000441003,rectum,carcinoma,+1,2	MUC2	614	2	NM_002457	exon30	c.T5115C	p.T1705T	CACCACTACGGTG	.	scavenged	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145299805	145299805	+	Missense_Mutation	SNP	A	A	C	rs61814629	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	80	3	70	2	0.0375	0.0285714	A|0.999;G|0.001	.	weak	NBPF10_ENST00000369338,extremity,malignant_melanoma,0,2	NBPF10	221	2	NM_001039703	exon6	c.A854C	p.E285A	AGGCAGAGATGAA	.	scavenged	Atlas-SNP
CTSD	1509	hgsc.bcm.edu	37	11	1780809	1780809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	23	7	29	0	0.304348	0	.	.	none	.	CTSD	26	.	NM_001909	exon3	c.G289A	p.D97N	CCGTGTCGAAGAC	.	PASS	Atlas-SNP
AHCYL2	23382	hgsc.bcm.edu	37	7	129028933	129028933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	180	77	175	1	0.427778	0.00571429	.	.	none	AHCYL2,caecum,carcinoma,-1,1	AHCYL2	79	1	NM_015328	exon3	c.C512T	p.S171L	AGACATCGCCCAG	.	scavenged	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	37	16	70989411	70989411	+	Silent	SNP	G	G	A	rs375756894		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	39	12	47	0	0.307692	0	.	.	weak	.	HYDIN	788	.	NM_001270974	exon40	c.C6183T	p.N2061N	GGCTGCGTTGTAG	.	PASS	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	37	19	51920119	51920119	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	197	6	176	2	0.0304569	0.0113636	.	.	none	SIGLEC10,NS,carcinoma,-1,1	SIGLEC10	112	1	NM_001171157	exon3	c.C507T	p.A169A	CTCAAAGGCCCAG	.	scavenged	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	37	5	37224369	37224369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	123	39	156	0	0.317073	0	.	.	none	.	C5orf42	422	.	NM_023073	exon14	c.A2567G	p.E856G	TCGATTTCTTGTA	.	PASS	Atlas-SNP
GPN3	51184	hgsc.bcm.edu	37	12	110902947	110902947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	87	37	94	0	0.425287	0	.	.	none	.	GPN3	37	.	NM_001164372	exon2	c.C238T	p.P80S	CTGCTGGATCCAG	.	PASS	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55147987	55147987	+	Missense_Mutation	SNP	G	G	C	rs76763913		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	210	19	195	5	0.0904762	0.025641	.	.	weak	LILRB1,NS,carcinoma,0,3	LILRB1	140	3	NM_001081637	exon14	c.G1696C	p.E566Q	TATGCCGAGGTGA	.	scavenged	Atlas-SNP
CRISP3	10321	hgsc.bcm.edu	37	6	49704124	49704124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	107	37	125	0	0.345794	0	.	.	none	.	CRISP3	67	.	NM_001190986	exon3	c.G238T	p.A80S	TTCTGGCAGGGGG	.	PASS	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	37	2	167163537	167163537	+	Silent	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	436	6	470	0	0.0137615	0	.	.	none	SCN9A,colon,carcinoma,-1,1	SCN9A	296	1	NM_002977	exon3	c.C306A	p.A102A	AGGTGTGGCATTG	.	scavenged	Atlas-SNP
CLEC18B	497190	hgsc.bcm.edu	37	16	74447510	74447510	+	Missense_Mutation	SNP	G	G	A	rs201069655		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	167	10	200	11	0.0598802	0.055	.	.	weak	CLEC18B,NS,carcinoma,0,1	CLEC18B	45	1	NM_001011880	exon4	c.C521T	p.A174V	TCTATCGCTGTCT	.	scavenged	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145299809	145299809	+	Missense_Mutation	SNP	G	G	A	rs61814630	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	78	3	69	3	0.0384615	0.0434783	.	.	weak	NBPF10_ENST00000369338,extremity,malignant_melanoma,0,3	NBPF10	221	3	NM_001039703	exon6	c.G858A	p.M286I	AGAGATGAACATT	.	scavenged	Atlas-SNP
S1PR2	9294	hgsc.bcm.edu	37	19	10334796	10334796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	18	8	40	0	0.444444	0	.	.	none	.	S1PR2	36	.	NM_004230	exon2	c.C786A	p.H262Q	GCAGGAGTGGACG	.	PASS	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	37	X	85403679	85403679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	121	41	164	0	0.338843	0	.	.	none	.	DACH2	263	.	NM_001139514	exon1	c.C55T	p.P19S	GGCGTCCCGGGGG	.	PASS	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	37	19	7620541	7620541	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	84	36	70	0	0.428571	0	.	.	none	.	PNPLA6	163	.	NM_001166111	exon26	c.C3015T	p.V1005V	GGGGGTCCCCGTG	.	PASS	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	37	5	94764428	94764428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	195	67	180	1	0.34359	0.00555556	.	.	none	FAM81B,NS,carcinoma,0,1	FAM81B	51	1	NM_152548	exon6	c.G778A	p.D260N	AACTTGGACATGA	.	scavenged	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33493188	33493188	+	Missense_Mutation	SNP	T	T	A	rs193179333	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	115	10	115	4	0.0869565	0.0347826	T|0.902;A|0.097	0.097	strong	RHPN2,colon,carcinoma,0,9	RHPN2	107	9	NM_033103	exon9	c.A1070T	p.H357L	AAGTAGTGGGCCA	.	scavenged	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	37	19	57327786	57327786	+	Missense_Mutation	SNP	C	C	G	rs371769465	alternate_allele	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	181	8	198	0	0.0441989	0	.	.	alt	ZIM2_ENST00000326441,NS,carcinoma,0,4	PEG3	414	4	NM_001146184	exon9	c.G2024C	p.R675P	TTCTGACGCCTTT	.	PASS	Atlas-SNP
ZNF547	284306	hgsc.bcm.edu	37	19	57889498	57889498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	73	19	63	0	0.260274	0	.	.	none	ZNF547,NS,carcinoma,0,1	ZNF547	45	1	NM_173631	exon4	c.A1154C	p.K385T	GTGGGAAATTCTT	.	PASS	Atlas-SNP
S1PR2	9294	hgsc.bcm.edu	37	19	10334795	10334795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	18	8	40	0	0.444444	0	.	.	none	.	S1PR2	36	.	NM_004230	exon2	c.T787C	p.S263P	GGCAGGAGTGGAC	.	PASS	Atlas-SNP
ITGAV	3685	hgsc.bcm.edu	37	2	187533626	187533626	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	174	60	187	0	0.344828	0	.	.	none	.	ITGAV	124	.	NM_002210	exon25	c.G2571A	p.E857E	TATGGAGATCAAC	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506076	195506076	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	91	7	77	7	0.0769231	0.0909091	.	.	none	MUC4_ENST00000463781,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	MUC4	1505	1	NM_018406	exon2	c.G12375C	p.Q4125H	GGTGGCCTGACCT	.	scavenged	Atlas-SNP
SLC25A37	51312	hgsc.bcm.edu	37	8	23429084	23429084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	86	35	87	0	0.406977	0	.	.	none	SLC25A37,NS,carcinoma,0,1	SLC25A37	27	1	NM_016612	exon4	c.G733A	p.G245R	CTGGCCGGGGCCC	.	PASS	Atlas-SNP
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907708	12907708	+	Silent	SNP	A	A	G	rs4026149	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	199	26	204	15	0.130653	0.0735294	A|0.667;G|0.333	0.333	strong	HNRNPCL1,NS,carcinoma,-1,1	HNRNPCL1	68	1	NM_001013631	exon2	c.T435C	p.R145R	ACGTTGACGTTTC	.	scavenged	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	37	11	55655597	55655597	+	Silent	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	514	30	557	20	0.0583658	0.0359066	.	.	none	SPRYD5_ENST00000327733,NS,carcinoma,+2,2	.	.	2	NM_032681	exon4	c.A597G	p.E199E	CTTGGAAAGGCTG	.	scavenged	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240370997	240370997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	96	64	93	1	0.666667	0.0107527	.	.	none	FMN2,NS,carcinoma,-1,2	FMN2	451	2	NM_020066	exon5	c.C2885A	p.A962E	CCGGGGCAGGCAT	.	scavenged	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	37	3	196509577	196509577	+	Missense_Mutation	SNP	C	C	G	rs76714248	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	240	10	216	3	0.0416667	0.0138889	C|0.991;G|0.009	0.009	strong	PAK2_ENST00000327134,colon,carcinoma,0,2	PAK2	113	2	NM_002577	exon2	c.C60G	p.S20R	GAGCAGCACCATC	.	scavenged	Atlas-SNP
KIAA0146	23514	hgsc.bcm.edu	37	8	48614293	48614293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	111	40	126	0	0.36036	0	.	.	none	KIAA0146,bladder,carcinoma,+1,1	KIAA0146	64	1	NM_001080394	exon13	c.A1784C	p.H595P	AAACTCATCTGCC	.	PASS	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	37	1	117150572	117150572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	247	3	225	0	0.0121457	0	.	.	none	IGSF3_ENST00000369483,NS,carcinoma,+1,2	IGSF3	294	2	NM_001542	exon5	c.T1214C	p.L405P	AGGGGGAGGACTA	.	scavenged	Atlas-SNP
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231	bycluster;byhapmap;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	5	5	0	0	1	.	T|0.000;G|1.000	1.000	strong	.	CTGF	36	.	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	PASS	Atlas-SNP
PTPN3	5774	hgsc.bcm.edu	37	9	112225710	112225710	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	103	36	99	0	0.349515	0	.	.	none	.	PTPN3	106	.	NM_001145368	exon2	c.C5G	p.T2S	CGGGAGGTCATAA	.	PASS	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	rs373314940		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	55	5	64	1	0.0909091	0.015625	.	.	weak	MN1,caecum,carcinoma,0,2	MN1	122	2	NM_002430	exon1	c.A1599G	p.Q533Q	CTGCTGTTGCTGC	.	scavenged	Atlas-SNP
KCNQ4	9132	hgsc.bcm.edu	37	1	41296932	41296932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	228	3	195	0	0.0131579	0	.	.	none	KCNQ4,NS,carcinoma,+1,1	KCNQ4	58	1	NM_004700	exon10	c.G1469A	p.R490H	GCACCCGCTTCCG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506147	195506147	+	Missense_Mutation	SNP	G	G	A	rs200473856	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	85	4	76	2	0.0470588	0.0263158	G|0.981;A|0.019	0.019	strong	MUC4_ENST00000463781,NS,lymphoid_neoplasm,0,1	MUC4	1505	1	NM_018406	exon2	c.C12304T	p.L4102F	AGGAAAGGCTGGT	.	scavenged	Atlas-SNP
SCNN1A	6337	hgsc.bcm.edu	37	12	6471387	6471387	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	97	24	97	0	0.247423	0	.	.	none	SCNN1A,NS,adenocarcinoma,-2,1	SCNN1A	54	1	NM_001159576	exon3	c.C882T	p.D294D	GAAGCAGTCCGAT	.	PASS	Atlas-SNP
ZSCAN20	7579	hgsc.bcm.edu	37	1	33956948	33956948	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	107	42	135	0	0.392523	0	.	.	none	.	ZSCAN20	107	.	NM_145238	exon6	c.C1090T	p.L364L	GAGCAGCTAAGGG	.	PASS	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910558	29910558	+	Missense_Mutation	SNP	T	T	A	rs2075684	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	129	5	128	2	0.0387597	0.015625	T|0.574;C|0.414;A|0.012	0.012	strong	HLA-A,NS,lymphoid_neoplasm,0,1	HLA-A	89	1	NM_001242758	exon2	c.T98A	p.F33Y	ATTTCTTCACATC	.	scavenged	Atlas-SNP
CISD2	493856	hgsc.bcm.edu	37	4	103806567	103806567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	97	34	96	0	0.350515	0	.	.	none	.	CISD2	9	.	NM_001008388	exon2	c.A298T	p.R100W	TATTGTAGGTGTT	.	PASS	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	58	7	48	1	0.12069	0.0208333	.	.	none	KIAA0040,colon,carcinoma,0,1	KIAA0040	2	1	NM_001162895	exon3	c.A217G	p.K73E	TCTTCTTCTTCTT	.	scavenged	Atlas-SNP
ZNF547	284306	hgsc.bcm.edu	37	19	57889497	57889497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	73	20	63	0	0.273973	0	.	.	none	ZNF547,NS,carcinoma,-1,1	ZNF547	45	1	NM_173631	exon4	c.A1153G	p.K385E	TGTGGGAAATTCT	.	PASS	Atlas-SNP
TNN	63923	hgsc.bcm.edu	37	1	175049323	175049323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	40	14	32	0	0.35	0	.	.	none	.	TNN	297	.	NM_022093	exon4	c.T809C	p.L270P	TGCAGCTGCTCAA	.	PASS	Atlas-SNP
ATOH1	474	hgsc.bcm.edu	37	4	94751127	94751127	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	83	23	74	0	0.277108	0	.	.	none	.	ATOH1	40	.	NM_005172	exon1	c.G1050A	p.S350S	TGACTCGGATGAG	.	PASS	Atlas-SNP
APOA1	335	hgsc.bcm.edu	37	11	116707093	116707093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	78	32	66	0	0.410256	0	.	.	none	.	APOA1	19	.	NM_000039	exon4	c.T235C	p.S79P	AGGTGGAGGTCAC	.	PASS	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	37	6	31239006	31239006	+	Missense_Mutation	SNP	G	G	T	rs76907552	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	161	18	112	3	0.111801	0.0267857	G|0.754;T|0.246	0.246	strong	HLA-C,trunk,malignant_melanoma,0,1	HLA-C	92	1	NM_002117	exon3	c.C463A	p.R155S	AGGAGCGCAGGTC	.	scavenged	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216251568	216251568	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	114	39	130	0	0.342105	0	.	.	none	.	USH2A	1168	.	NM_206933	exon27	c.T5435G	p.I1812R	GCTGATATGAAAG	.	PASS	Atlas-SNP
MURC	347273	hgsc.bcm.edu	37	9	103348299	103348299	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	115	38	111	0	0.330435	0	.	.	none	.	MURC	43	.	NM_001018116	exon2	c.A661T	p.I221F	AACAGAATTAGAA	.	PASS	Atlas-SNP
RASL12	51285	hgsc.bcm.edu	37	15	65347441	65347441	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	49	16	33	0	0.326531	0	.	.	none	.	RASL12	32	.	NM_016563	exon5	c.C597T	p.S199S	CTCCTCGGAGATG	.	PASS	Atlas-SNP
CYP2C8	1558	hgsc.bcm.edu	37	10	96802724	96802724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	133	49	111	0	0.368421	0	.	.	none	.	CYP2C8	73	.	NM_000770	exon7	c.T1072C	p.Y358H	CACTGTATCTCTG	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274311	39274311	+	Missense_Mutation	SNP	T	T	C	rs425755	bycluster	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	52	13	44	0	0.25	0	.	.	weak	KRTAP4-11,rectum,carcinoma,0,5	KRTAP4-11	94	5	NM_033059	exon1	c.A257G	p.K86R	TGGGGCTTGCAGC	.	PASS	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	37	9	6986601	6986601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	141	2	120	0	0.0141844	0	.	.	none	KDM4C_ENST00000381306,right_upper_lobe,carcinoma,-2,2	KDM4C	186	2	NM_001146696	exon11	c.G1678T	p.G560C	GGGAATGGCCTTG	.	scavenged	Atlas-SNP
LTN1	26046	hgsc.bcm.edu	37	21	30365143	30365143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	84	27	85	0	0.321429	0	.	.	none	.	LTN1	141	.	NM_015565	exon1	c.C122T	p.T41I	GCAGCTGTACTCT	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45214527	45214527	+	Missense_Mutation	SNP	T	T	C	rs62075618	bycluster;byfrequency	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	30	5	20	2	0.166667	0.1	T|0.500;C|0.500	0.500	strong	CDC27_ENST00000531206,colon,carcinoma,-1,2	CDC27	337	2	NM_001114091	exon14	c.A1922G	p.Y641C	GCATTATAATGTC	.	scavenged	Atlas-SNP
ADAM22	53616	hgsc.bcm.edu	37	7	87765308	87765308	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	72	19	79	0	0.263889	0	.	.	none	.	ADAM22	280	.	NM_021722	exon14	c.C1182T	p.C394C	TAAATGCGAGGAC	.	PASS	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140995449	140995449	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	49	17	52	0	0.346939	0	.	.	none	.	MAGEC1	317	.	NM_005462	exon4	c.G2259A	p.L753L	TTCTTTGAGTCTT	.	PASS	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	37	6	31238983	31238983	+	Silent	SNP	G	G	C	rs2308585	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	156	17	121	3	0.108974	0.0247934	G|0.514;C|0.486	0.486	strong	HLA-C_ENST00000383329,NS,carcinoma,0,2	HLA-C	92	2	NM_002117	exon3	c.C486G	p.T162T	AGCCGCGGTGTCC	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195515026	195515026	+	Missense_Mutation	SNP	G	G	C	rs200763050		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	87	5	90	0	0.0574713	0	G|0.998;C|0.002	0.002	weak	MUC4_ENST00000463781,NS,carcinoma,0,4	MUC4	1505	4	NM_018406	exon2	c.C3425G	p.T1142S	GAGGAAGTGTCGG	.	PASS	Atlas-SNP
TUBA3C	7278	hgsc.bcm.edu	37	13	19751301	19751301	+	Silent	SNP	C	C	T	rs140548354		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	124	6	112	0	0.0483871	0	C|0.999;T|0.001	0.001	weak	TUBA3C,bladder,carcinoma,-2,1	TUBA3C	166	1	NM_006001	exon4	c.G822A	p.P274P	GATGACCGGGGCG	.	scavenged	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505742	195505742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	100	6	79	3	0.06	0.0379747	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C12709G	p.H4237D	TGGCGTGACCTGT	.	scavenged	Atlas-SNP
NUDT5	11164	hgsc.bcm.edu	37	10	12215729	12215729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	60	21	77	0	0.35	0	.	.	none	.	NUDT5	10	.	NM_014142	exon6	c.G373A	p.E125K	AACATTCGGCAAT	.	PASS	Atlas-SNP
ZWINT	11130	hgsc.bcm.edu	37	10	58120984	58120984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	27	16	26	0	0.592593	0	.	.	none	.	ZWINT	39	.	NM_007057	exon1	c.A14G	p.E5G	TCTGTCTCCGCTG	.	PASS	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	37	17	10236473	10236473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	53	20	50	3	0.377358	0.06	.	.	none	MYH13_ENST00000252172,NS,carcinoma,0,2	MYH13	533	2	NM_003802	exon19	c.C2092T	p.R698C	TACAGCGCAGCTG	.	scavenged	Atlas-SNP
FRG2B	441581	hgsc.bcm.edu	37	10	135438933	135438933	+	Silent	SNP	C	C	T	rs200793608		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	310	6	317	3	0.0193548	0.00946372	C|0.996;T|0.004	0.004	weak	FRG2B,colon,carcinoma,-1,1	FRG2B	47	1	NM_001080998	exon4	c.G507A	p.P169P	AATTGACGGTGTT	.	scavenged	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	37	3	39230658	39230658	+	Silent	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	63	6	63	0	0.0952381	0	.	.	none	.	XIRP1	173	.	NM_001198621	exon2	c.C279T	p.C93C	GCGCATGCACTGA	.	PASS	Atlas-SNP
FAAH2	158584	hgsc.bcm.edu	37	X	57515299	57515299	+	Silent	SNP	G	G	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	130	34	131	0	0.261538	0	.	.	none	.	FAAH2	66	.	NM_174912	exon11	c.G1533T	p.L511L	TCATCTGACCCTG	.	PASS	Atlas-SNP
PSG2	5670	hgsc.bcm.edu	37	19	43585253	43585253	+	Silent	SNP	C	C	T	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	180	3	207	2	0.0166667	0.00966184	.	.	none	PSG2,NS,carcinoma,0,2	PSG2	84	2	NM_031246	exon2	c.G210A	p.G70G	GATTTGCCCTTTG	.	scavenged	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	37	13	33684064	33684064	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	81	32	81	0	0.395062	0	.	.	none	.	STARD13	100	.	NM_178006	exon12	c.A2993T	p.Q998L	ACATACTGGTAGA	.	PASS	Atlas-SNP
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	4	4	2	0	1	0	C|0.430;A|0.570	0.570	strong	.	HES3	3	.	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	PASS	Atlas-SNP
MARCH1	55016	hgsc.bcm.edu	37	4	164466777	164466777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	163	2	119	1	0.0122699	0.00840336	.	.	none	MARCH1,NS,carcinoma,0,1	MARCH1	83	1	NM_001166373	exon7	c.C542T	p.A181V	TCCTCCGCTGTCC	.	scavenged	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	37	3	196509522	196509522	+	Missense_Mutation	SNP	C	C	G	rs67093638	bycluster;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	220	5	220	1	0.0227273	0.00454545	C|0.986;G|0.014	0.014	strong	PAK2_ENST00000327134,NS,carcinoma,0,4	PAK2	113	4	NM_002577	exon2	c.C5G	p.S2C	TCATGTCTGATAA	.	scavenged	Atlas-SNP
TMEM177	80775	hgsc.bcm.edu	37	2	120438454	120438454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	98	37	97	0	0.377551	0	.	.	none	.	TMEM177	26	.	NM_030577	exon2	c.G25A	p.A9T	CGGACCGCAGCAT	.	PASS	Atlas-SNP
MYD88	4615	hgsc.bcm.edu	37	3	38181908	38181908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	40	27	37	0	0.675	0	.	.	none	.	MYD88	900	.	NM_002468	exon3	c.A532G	p.I178V	GCCTTCATCTGCT	.	PASS	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	37	6	31238009	31238009	+	Silent	SNP	T	T	C	rs1131014	bycluster;byfrequency;by1000genomes	TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	56	44	81	20	0.785714	0.246914	T|0.651;C|0.349	0.349	strong	HLA-C_ENST00000383329,colon,carcinoma,0,2	HLA-C	92	2	NM_002117	exon4	c.A873G	p.Q291Q	GGGCTCTTGCAGC	.	scavenged	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	37	8	123966206	123966206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	98	50	87	0	0.510204	0	.	.	none	.	ZHX2	106	.	NM_014943	exon3	c.T2456C	p.V819A	AAGGTGTGTCGGA	.	PASS	Atlas-SNP
FCER1G	2207	hgsc.bcm.edu	37	1	161187859	161187859	+	Silent	SNP	C	C	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	74	24	52	0	0.324324	0	.	.	none	FCER1G,NS,carcinoma,-1,2	FCER1G	11	2	NM_004106	exon2	c.C133A	p.R45R	TACTGTCGACTGA	.	PASS	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57971190	57971190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	157	3	127	0	0.0191083	0	.	.	none	OR1S2,trunk,malignant_melanoma,0,1	OR1S2	119	1	NM_001004459	exon1	c.C464T	p.T155I	AGCAAAGTGCCGA	.	scavenged	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	37	19	3751204	3751204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RQ-A6JB-01A-11D-A31X-10	TCGA-RQ-A6JB-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	820fd611-7c08-4a0a-8884-6d25954b28f4	47b47ec9-ab7b-47f1-b2f6-e76b3584891f	33	10	55	0	0.30303	0	.	.	none	.	APBA3	28	.	NM_004886	exon10	c.A1639C	p.T547P	CCTCGGTGAGCAG	.	PASS	Atlas-SNP
