Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZNF638	27332	broad.mit.edu	37	2	71658501	71658501	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:71658501C>T	ENST00000409544.1	+	26	6325	c.5695C>T	c.(5695-5697)Cgc>Tgc	p.R1899C	ZNF638_ENST00000264447.4_Missense_Mutation_p.R1899C|ZNF638_ENST00000409407.1_Missense_Mutation_p.R839C|ZNF638_ENST00000355812.3_3'UTR	NM_001252612.1	NP_001239541.1	Q14966	ZN638_HUMAN	zinc finger protein 638	1899					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(16)|lung(28)|ovary(2)|pancreas(2)|prostate(1)|skin(2)|urinary_tract(1)	63						AGAGCGAAAACGCAAGAAGAC	0.353000													40	57					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29625961	29625961	+	Missense_Mutation	SNP	C	C	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr20:29625961C>A	ENST00000278882.3	+	5	585	c.205C>A	c.(205-207)Caa>Aaa	p.Q69K	FRG1B_ENST00000358464.4_Missense_Mutation_p.Q69K|FRG1B_ENST00000439954.2_Missense_Mutation_p.Q74K														p.Q69K(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ACCAAGAGAACAATGGGAACC	0.333000													5	116					0.0215528	0.0220784	1	1	0
LRIG3	121227	broad.mit.edu	37	12	59274457	59274457	+	Silent	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr12:59274457G>A	ENST00000320743.3	-	13	1993	c.1707C>T	c.(1705-1707)cgC>cgT	p.R569R	LRIG3_ENST00000379141.4_Silent_p.R509R	NM_153377.4	NP_700356.2	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like domains 3	569	Ig-like C2-type 1.					integral to membrane			LRIG3/ROS1(2)	breast(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(12)|liver(1)|lung(14)|ovary(1)|prostate(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	48			GBM - Glioblastoma multiforme(1;1.17e-18)			ATTCCACCTCGCGCAGCCGAA	0.468000			T	ROS1	NSCLC								24	51					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr20:29628245G>A	ENST00000278882.3	+	6	627	c.247G>A	c.(247-249)Gcc>Acc	p.A83T	FRG1B_ENST00000358464.4_Missense_Mutation_p.A83T|FRG1B_ENST00000439954.2_Missense_Mutation_p.A88T														p.A83T(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGCTTTGTTGGCCTCAAATAG	0.353000													5	135					0	0	1	0	0
MBTPS1	8720	broad.mit.edu	37	16	84104317	84104317	+	Missense_Mutation	SNP	G	G	A	rs140684387		TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr16:84104317G>A	ENST00000343411.3	-	13	2153	c.1658C>T	c.(1657-1659)tCg>tTg	p.S553L		NM_003791.2	NP_003782.1	Q14703	MBTP1_HUMAN	membrane-bound transcription factor peptidase, site 1	553					cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			NS(1)|breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(12)|lung(10)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	41						CCATAAGACCGAGGAGTAGGA	0.512000													4	98					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29822350	29822350	+	Missense_Mutation	SNP	C	C	G			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr10:29822350C>G	ENST00000375398.2	-	10	1395	c.946G>C	c.(946-948)Gct>Cct	p.A316P	SVIL_ENST00000375400.3_Intron|SVIL_ENST00000355867.4_Missense_Mutation_p.A316P			O95425	SVIL_HUMAN	supervillin	316					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			breast(1)|central_nervous_system(3)|cervix(1)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(24)|lung(35)|ovary(8)|prostate(2)|skin(4)|stomach(7)|upper_aerodigestive_tract(2)|urinary_tract(2)	112		Breast(68;0.103)				CTGTTTCGAGCACTTTCCTCT	0.458000													13	35					0	0	1	0	0
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	RNA	SNP	T	T	C			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr15:78211548T>C	ENST00000565869.1	+	0	111				RP11-114H24.2_ENST00000567226.1_RNA																							CCACCTGGGATTGGAGCTTTC	0.562000													4	107					0	0	1	0	0
AGFG2	3268	broad.mit.edu	37	7	100161493	100161493	+	Missense_Mutation	SNP	T	T	C			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr7:100161493T>C	ENST00000300176.4	+	10	1330	c.1208T>C	c.(1207-1209)tTc>tCc	p.F403S	AGFG2_ENST00000262935.4_3'UTR|AGFG2_ENST00000474713.1_Intron	NM_006076.4	NP_006067.3	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	403	Pro-rich.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding	p.F403fs*30(1)		NS(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(8)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	21						GGGCCTGGCTTCCCCCAGGCA	0.617000											OREG0018204	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	54					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	T	C			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr20:29628243T>C	ENST00000278882.3	+	6	625	c.245T>C	c.(244-246)tTg>tCg	p.L82S	FRG1B_ENST00000358464.4_Missense_Mutation_p.L82S|FRG1B_ENST00000439954.2_Missense_Mutation_p.L87S														p.L82S(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGGCTTTGTTGGCCTCAAAT	0.363000													5	135					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr4:140811108C>T	ENST00000509479.2	-	2	2338	c.1482G>A	c.(1480-1482)caG>caA	p.Q494Q	MAML3_ENST00000327122.5_Silent_p.Q338Q|MAML3_ENST00000398940.1_Silent_p.Q33Q	NM_018717.4	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3 (Drosophila)	494	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			breast(1)|endometrium(7)|kidney(2)|large_intestine(1)|lung(9)|ovary(1)|prostate(2)|urinary_tract(2)	25	all_hematologic(180;0.162)					gctgctgctgctgctgctgct	0.537000													4	47					0	0	1	0	0
OR13D1	286365	broad.mit.edu	37	9	107456886	107456886	+	Missense_Mutation	SNP	C	C	G			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr9:107456886C>G	ENST00000318763.5	+	1	227	c.184C>G	c.(184-186)Ctc>Gtc	p.L62V		NM_001004484.1	NP_001004484.1	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D, member 1	62					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(4)|lung(10)|ovary(1)|prostate(2)|skin(2)	19						TCTGTTCCTGCTCTGCCTCAT	0.443000													46	69					0	0	1	0	0
FAM9C	171484	broad.mit.edu	37	X	13061059	13061059	+	Silent	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chrX:13061059G>A	ENST00000542843.1	-	4	402	c.192C>T	c.(190-192)acC>acT	p.T64T	FAM9C_ENST00000333995.3_Silent_p.T64T|FAM9C_ENST00000380625.3_Silent_p.T64T			Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C	64						nucleus				NS(1)|central_nervous_system(1)|kidney(1)|large_intestine(1)|upper_aerodigestive_tract(1)	5						CTAGCTCCTTGGTATCAACCC	0.348000													8	83					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													5	102					0.00198382	0.00208301	1	1	0
IGF2BP3	10643	broad.mit.edu	37	7	23381773	23381773	+	Silent	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr7:23381773G>A	ENST00000258729.3	-	10	1469	c.1113C>T	c.(1111-1113)aaC>aaT	p.N371N		NM_006547.2	NP_006538.2	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding protein 3	371					anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(8)|lung(14)|ovary(2)|prostate(2)|skin(4)|stomach(1)	34						GACCCAAGGCGTTCAGATTTA	0.468000													19	33					0	0	1	0	0
ABCA1	19	broad.mit.edu	37	9	107558678	107558678	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr9:107558678C>T	ENST00000374736.3	-	38	5543	c.5149G>A	c.(5149-5151)Gtc>Atc	p.V1717I		NM_005502.3	NP_005493.2	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A (ABC1), member 1	1717					Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			NS(1)|autonomic_ganglia(1)|breast(5)|central_nervous_system(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(31)|liver(1)|lung(40)|ovary(5)|pancreas(2)|prostate(4)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	115				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATGATAATGACCAGTGTGGCA	0.433000													15	17					0	0	1	0	0
TYW1B	441250	broad.mit.edu	37	7	72081809	72081809	+	RNA	SNP	T	T	C			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr7:72081809T>C	ENST00000343721.5	-	0	816				TYW1B_ENST00000435769.2_RNA|TYW1B_ENST00000438125.1_RNA			Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)						tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity										GAACTTTCTCTGCAGTAGGTA	0.498000													5	82					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000446179.1_Missense_Mutation_p.R132H|IDH1_ENST00000345146.2_Missense_Mutation_p.R132H	NM_001282387.1	NP_001269316.1	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								34	60					0	0	1	0	0
UBC	7316	broad.mit.edu	37	12	125397211	125397211	+	Silent	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr12:125397211G>A	ENST00000536769.1	-	1	2683	c.1107C>T	c.(1105-1107)tcC>tcT	p.S369S	UBC_ENST00000339647.5_Silent_p.S369S|UBC_ENST00000546120.1_Silent_p.S293S|UBC_ENST00000538617.1_Intron			P0CG48	UBC_HUMAN	ubiquitin C	369	Ubiquitin-like 5.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			breast(3)|endometrium(4)|kidney(4)|large_intestine(2)|lung(13)|ovary(3)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		GGTGCAAGGTGGACTCTTTCT	0.542000													87	227					0	0	1	0	0
LOC101927209	101927209	broad.mit.edu	37	1	142713407	142713407	+	RNA	SNP	C	C	T	rs142431664	by1000genomes	TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr1:142713407C>T	ENST00000610091.1	-	0	2251																											CAGTAAGAAACTCATTCTTAT	0.318000													9	49					0	0	1	0	0
KRT81	3887	broad.mit.edu	37	12	52680923	52680923	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr12:52680923C>T	ENST00000327741.5	-	7	1278	c.1210G>A	c.(1210-1212)Gcc>Acc	p.A404T	KRT86_ENST00000544024.1_Intron|KRT86_ENST00000423955.2_Intron	NM_002281.3	NP_002272.2	Q14533	KRT81_HUMAN	keratin 81	404	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			breast(2)|endometrium(3)|large_intestine(3)|lung(6)|prostate(1)|stomach(1)	16				BRCA - Breast invasive adenocarcinoma(357;0.189)		CTGTAGGTGGCGATCTCGATG	0.642000													10	116					0	0	1	0	0
DACH2	117154	broad.mit.edu	37	X	85404019	85404019	+	Missense_Mutation	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chrX:85404019G>A	ENST00000373131.1	+	1	558	c.395G>A	c.(394-396)cGc>cAc	p.R132H	DACH2_ENST00000373125.4_Missense_Mutation_p.R132H	NM_001139514.1	NP_001132986.1	Q96NX9	DACH2_HUMAN	dachshund homolog 2 (Drosophila)	132	DACHbox-N.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			breast(2)|central_nervous_system(3)|cervix(1)|endometrium(7)|kidney(6)|large_intestine(14)|lung(28)|ovary(5)|pancreas(1)|skin(1)|upper_aerodigestive_tract(3)	71						CGGATCCTCCGCGGGCTGGGG	0.567000													5	72					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110530475	110530475	+	Silent	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr8:110530475G>A	ENST00000378402.5	+	73	11873	c.11769G>A	c.(11767-11769)ttG>ttA	p.L3923L		NM_177531.4	NP_803875.2	Q86WI1	PKHL1_HUMAN	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	3923					immune response	cytosol|extracellular space|integral to membrane	receptor activity			NS(4)|breast(13)|central_nervous_system(6)|cervix(1)|endometrium(19)|kidney(17)|large_intestine(34)|lung(122)|ovary(11)|pancreas(3)|prostate(9)|skin(3)|stomach(4)|upper_aerodigestive_tract(13)|urinary_tract(4)	263			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTATCTTTTGGTTAAAGGAA	0.378000										HNSCC(38;0.096)			20	46					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004207	74004207	+	Silent	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr17:74004207C>T	ENST00000301607.3	-	22	5332	c.5079G>A	c.(5077-5079)acG>acA	p.T1693T	EVPL_ENST00000586740.1_Silent_p.T1715T	NM_001988.2	NP_001979.2	Q92817	EVPL_HUMAN	envoplakin	1693	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			breast(4)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(8)|lung(14)|ovary(2)|pancreas(2)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)	54						TGTCCTTCCCCGTCTCGGGTT	0.617000													45	66					0	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24787935	24787935	+	Silent	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr14:24787935C>T	ENST00000310677.4	-	25	3119	c.3006G>A	c.(3004-3006)ccG>ccA	p.P1002P	ADCY4_ENST00000554068.2_Silent_p.P1002P|ADCY4_ENST00000418030.2_Silent_p.P1002P	NM_001198568.1|NM_001198592.1|NM_139247.3	NP_001185497.1|NP_001185521.1|NP_640340.2	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	1002					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			cervix(1)|endometrium(1)|kidney(1)|large_intestine(10)|lung(13)|ovary(2)|pancreas(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	34				GBM - Glioblastoma multiforme(265;0.0192)		TGTCATATTGCGGCTTCTGGG	0.522000													11	120					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15905218	15905218	+	Silent	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr19:15905218C>T	ENST00000308940.8	+	1	458	c.360C>T	c.(358-360)taC>taT	p.Y120Y		NM_001004466.1	NP_001004466.1	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H, member 5	120					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(3)|liver(1)|lung(9)|ovary(1)	20						TCATGGGCTACGACCGCTACG	0.642000													48	73					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													4	96					0	0	1	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995753	57995753	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr11:57995753C>T	ENST00000316770.2	-	1	637	c.595G>A	c.(595-597)Gtg>Atg	p.V199M		NM_001004471.2	NP_001004471.1	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q, member 1	199					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V199L(1)		autonomic_ganglia(1)|breast(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(26)|ovary(2)	35		Breast(21;0.0589)				GCCTGGTGCACGCGGATGTCA	0.592000													21	28					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73418781	73418781	+	Missense_Mutation	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr15:73418781G>A	ENST00000339362.5	+	5	1195	c.748G>A	c.(748-750)Gta>Ata	p.V250I	NEO1_ENST00000558964.1_Missense_Mutation_p.V250I|NEO1_ENST00000261908.6_Missense_Mutation_p.V250I|NEO1_ENST00000560262.1_Missense_Mutation_p.V250I			Q92859	NEO1_HUMAN	neogenin 1	250	Ig-like C2-type 3.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				NS(1)|breast(2)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(3)|large_intestine(9)|lung(26)|pancreas(2)|prostate(1)|skin(3)|urinary_tract(2)	57						ATCAGACTTGGTATTTTTGAA	0.388000													4	114					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593025	96593025	+	Missense_Mutation	SNP	C	C	T	rs75189823	by1000genomes	TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:96593025C>T	ENST00000456556.1	-	28	1960	c.1876G>A	c.(1876-1878)Gat>Aat	p.D626N						ankyrin repeat domain 36C									p.D626N(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TCTTTCTCATCACTTGTAGCC	0.318000													5	102					0	0	1	0	0
ARMC9	80210	broad.mit.edu	37	2	232141451	232141451	+	Silent	SNP	G	G	T	rs141707678	by1000genomes	TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:232141451G>T	ENST00000349938.4	+	15	1631	c.1437G>T	c.(1435-1437)tcG>tcT	p.S479S	ARMC9_ENST00000483477.1_3'UTR	NM_001271466.1|NM_025139.4	NP_001258395.1|NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	479							binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(5)|ovary(2)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	22		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		TGGAGTACTCGGTGGCTTTGC	0.562000													38	94					2.51541e-25	2.7089e-25	1	1	0
ADAR	103	broad.mit.edu	37	1	154574120	154574120	+	Missense_Mutation	SNP	A	A	C			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr1:154574120A>C	ENST00000368474.4	-	2	1197	c.998T>G	c.(997-999)gTg>gGg	p.V333G	ADAR_ENST00000368471.3_Missense_Mutation_p.V38G|ADAR_ENST00000292205.5_Missense_Mutation_p.V376G	NM_001111.4|NM_015840.3|NM_015841.3	NP_001102|NP_056655.2|NP_056656.2	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific	333					adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			NS(1)|breast(2)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(9)|lung(20)|ovary(4)|prostate(2)|skin(2)	51	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GTCAATTAGCACAGCATTTAT	0.453000													39	66					0	0	1	0	0
CCDC150	284992	broad.mit.edu	37	2	197541384	197541384	+	Nonsense_Mutation	SNP	C	C	T			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr2:197541384C>T	ENST00000389175.4	+	12	1504	c.1369C>T	c.(1369-1371)Cga>Tga	p.R457*	CCDC150_ENST00000472405.2_3'UTR|CCDC150_ENST00000423093.2_Nonsense_Mutation_p.R125*|CCDC150_ENST00000272831.7_Nonsense_Mutation_p.R125*	NM_001080539.1	NP_001074008.1	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	457										breast(3)|endometrium(6)|kidney(1)|large_intestine(6)|lung(14)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)	33						TGCAAGATTGCGAGGTGAATT	0.403000													23	47					0	0	1	0	0
PHF6	84295	broad.mit.edu	37	X	133511650	133511650	+	Translation_Start_Site	SNP	G	G	C			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chrX:133511650G>C	ENST00000332070.3	+	2	205	c.3G>C	c.(1-3)atG>atC	p.M1I	PHF6_ENST00000370803.3_Start_Codon_SNP_p.M1I|PHF6_ENST00000394292.1_Start_Codon_SNP_p.M1I|PHF6_ENST00000370799.1_Start_Codon_SNP_p.M1I|PHF6_ENST00000370800.4_Start_Codon_SNP_p.M1I|PHF6_ENST00000416404.2_Start_Codon_SNP_p.M1I	NM_032458.2	NP_115834.1	Q8IWS0	PHF6_HUMAN	PHD finger protein 6	1					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(88)|kidney(2)|large_intestine(1)|liver(1)|lung(6)|ovary(1)|skin(1)|urinary_tract(1)	103	Acute lymphoblastic leukemia(192;0.000127)					TAAAAATCATGTCAAGCTCAG	0.343000			"""F, N, Splice, Mis"""		ETP ALL								43	101					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr9:20414340G>A	ENST00000380338.4	-	5	790	c.504C>T	c.(502-504)agC>agT	p.S168S	MLLT3_ENST00000429426.2_Silent_p.S165S|MLLT3_ENST00000475957.1_5'UTR|MLLT3_ENST00000355930.6_5'UTR	NM_004529.2	NP_004520.2	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	168	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S168S(5)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctactgctgc	0.537000			T	MLL	ALL								5	120					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106602584	106602584	+	Missense_Mutation	SNP	A	A	G			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr10:106602584A>G	ENST00000369701.3	+	2	889	c.662A>G	c.(661-663)aAc>aGc	p.N221S		NM_014978.1	NP_055793.1	Q9UPU3	SORC3_HUMAN	sortilin-related VPS10 domain containing receptor 3	221						integral to membrane	neuropeptide receptor activity			autonomic_ganglia(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(19)|lung(63)|ovary(6)|pancreas(1)|prostate(6)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	131		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TATGACTTCAACCTGGGCAGC	0.483000													4	66					0	0	1	0	0
RP11-423O2.5	0	broad.mit.edu	37	1	142803276	142803278	+	RNA	DEL	AAC	AAC	-			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr1:142803276_142803278delAAC	ENST00000423385.1	-	0	1687_1689																											ACCAAACCAAaacaacaacaaca	0.345													6	10	---	---	---	---					
LOC101927708	101927708	broad.mit.edu	37	11	3552650	3552651	+	RNA	INS	-	-	G	rs34642454		TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr11:3552650_3552651insG	ENST00000527970.1	-	0	285																											CAGCACCCCATGGGGGGGCCCT	0.500													4	5	---	---	---	---					
RRN3P2	653390	broad.mit.edu	37	16	29118702	29118704	+	RNA	DEL	AGC	AGC	-			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr16:29118702_29118704delAGC	ENST00000564580.1	+	0	1448				CTB-134H23.3_ENST00000562618.1_RNA																							GCCAGGTCCAagcagcagcagca	0.660													2	4	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42795089	42795089	+	Frame_Shift_Del	DEL	G	G	-			TCGA-RY-A83X-01A-11D-A36O-08	TCGA-RY-A83X-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae5ee5e5-80f2-44c6-b33d-35ef309c9ba3	519730cf-646f-4305-bb34-d96cf0de58d9	g.chr19:42795089delG	ENST00000572681.2	+	11	4964	c.4896delG	c.(4894-4896)ctgfs	p.L1632fs	CIC_ENST00000160740.3_Frame_Shift_Del_p.L723fs|CIC_ENST00000575354.2_Frame_Shift_Del_p.L723fs			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	723					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				GCTCCCCGCTGGGTGTCAGCT	0.652			"""Mis, F, S"""		oligodendroglioma								18	10	---	---	---	---					
