Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OR4A47	403253	broad.mit.edu	37	11	48510452	48510452	+	Silent	SNP	C	C	A			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr11:48510452C>A	ENST00000446524.1	+	1	184	c.108C>A	c.(106-108)acC>acA	p.T36T		NM_001005512.2	NP_001005512.2	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A, member 47	36					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|breast(2)|endometrium(1)|kidney(1)|large_intestine(2)|lung(18)|ovary(1)|skin(1)|urinary_tract(2)	29						ACATTTTGACCATGGTGGGCA	0.423000													8	52					0.00307968	0.00307968	1	1	0
DUS4L	11062	broad.mit.edu	37	7	107214150	107214150	+	Splice_Site	SNP	T	T	C			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr7:107214150T>C	ENST00000265720.3	+	5	602	c.240T>C	c.(238-240)ggT>ggC	p.G80G	DUS4L_ENST00000402620.1_Intron	NM_001270419.1|NM_181581.2	NP_001257348.1|NP_853559.1	O95620	DUS4L_HUMAN	dihydrouridine synthase 4-like (S. cerevisiae)	80					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			breast(1)|endometrium(1)|large_intestine(2)|lung(2)|skin(1)|stomach(1)	8						TTTTGTCAGGTGATTGCCCAT	0.368000													7	225					0	0	1	0	0
FKBPL	63943	broad.mit.edu	37	6	32097117	32097117	+	Silent	SNP	G	G	A			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr6:32097117G>A	ENST00000375156.3	-	2	711	c.441C>T	c.(439-441)ggC>ggT	p.G147G		NM_022110.3	NP_071393.2	Q9UIM3	FKBPL_HUMAN	FK506 binding protein like	147					response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity										ATGGCCCTACGCCCATAGTTA	0.577000													109	147					0	0	1	0	0
XXYLT1	152002	broad.mit.edu	37	3	194877208	194877208	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr3:194877208C>T	ENST00000310380.6	-	3	863	c.755G>A	c.(754-756)gGc>gAc	p.G252D	XXYLT1_ENST00000437101.1_Missense_Mutation_p.G49D|XXYLT1_ENST00000429994.1_Missense_Mutation_p.G106D|XXYLT1_ENST00000355729.4_Missense_Mutation_p.G49D	NM_152531.4	NP_689744.3	Q8NBI6	CC021_HUMAN	xyloside xylosyltransferase 1	252						integral to membrane	transferase activity, transferring glycosyl groups										CCGGGCTATGCCGATGATGGC	0.572000													4	47					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79312394	79312394	+	Missense_Mutation	SNP	G	G	A			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr15:79312394G>A	ENST00000419573.3	-	11	1869	c.1595C>T	c.(1594-1596)aCg>aTg	p.T532M	RASGRF1_ENST00000560334.1_5'UTR|RASGRF1_ENST00000558480.2_Missense_Mutation_p.T532M	NM_002891.4	NP_002882.3	Q13972	RGRF1_HUMAN	Ras protein-specific guanine nucleotide-releasing factor 1	532	PH 2.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|endometrium(7)|kidney(4)|large_intestine(18)|lung(23)|ovary(2)|prostate(6)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	71						TTCCTCCTCCGTGCTTTCTGG	0.498000													8	66					0	0	1	0	0
ZBTB20	26137	broad.mit.edu	37	3	114058171	114058171	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr3:114058171C>T	ENST00000462705.1	-	12	2509	c.1688G>A	c.(1687-1689)tGt>tAt	p.C563Y	ZBTB20_ENST00000481632.1_Missense_Mutation_p.C563Y|ZBTB20_ENST00000393785.2_Missense_Mutation_p.C563Y|ZBTB20_ENST00000471418.1_Missense_Mutation_p.C563Y|ZBTB20_ENST00000474710.1_Missense_Mutation_p.C636Y|ZBTB20_ENST00000464560.1_Missense_Mutation_p.C563Y|ZBTB20_ENST00000357258.3_Missense_Mutation_p.C563Y	NM_001164343.1	NP_001157815.1	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20	636					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(10)|kidney(2)|large_intestine(8)|lung(15)|ovary(4)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	48				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GCAGATACTACACTGGTATGC	0.527000													9	95					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047027	9047027	+	Missense_Mutation	SNP	G	G	A	rs111231164		TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr19:9047027G>A	ENST00000397910.4	-	5	34807	c.34604C>T	c.(34603-34605)aCg>aTg	p.T11535M		NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	11537	Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.T7168M(1)|p.T11535M(1)		NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						GATAGTTGTCGTTGAAACAGC	0.512000													10	41					0	0	1	0	0
RNF114	55905	broad.mit.edu	37	20	48558201	48558201	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr20:48558201C>T	ENST00000244061.2	+	2	246	c.244C>T	c.(244-246)Cgg>Tgg	p.R82W		NM_018683.3	NP_061153.1	Q9Y508	RN114_HUMAN	ring finger protein 114	82					cell differentiation|multicellular organismal development|spermatogenesis	intracellular	zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|lung(1)|ovary(1)	5						GGAGCTCGAGCGGCAGATCGA	0.557000													4	110					0	0	1	0	0
TGIF2LY	90655	broad.mit.edu	37	Y	3447662	3447662	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chrY:3447662C>T	ENST00000559055.2	+	1	507	c.377C>T	c.(376-378)aCg>aTg	p.T126M	TGIF2LY_ENST00000321217.4_Missense_Mutation_p.T126M			Q8IUE0	TF2LY_HUMAN	TGFB-induced factor homeobox 2-like, Y-linked	126						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			kidney(1)|upper_aerodigestive_tract(1)	2						GGCCACAAAACGGGCAAAGAT	0.547000													13	22					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220168541	220168541	+	Missense_Mutation	SNP	T	T	C			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr2:220168541T>C	ENST00000295718.2	-	4	533	c.293A>G	c.(292-294)cAc>cGc	p.H98R	PTPRN_ENST00000423636.2_Missense_Mutation_p.H8R|PTPRN_ENST00000409251.3_Missense_Mutation_p.H98R|AC114803.3_ENST00000417355.1_RNA	NM_002846.3	NP_002837.1	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	98					response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			breast(3)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|lung(28)|ovary(3)|prostate(4)|skin(11)|upper_aerodigestive_tract(1)|urinary_tract(1)	65		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GAGGTCATCGTGCCAGGACAA	0.587000													4	19					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000345146.2_Missense_Mutation_p.R132H|IDH1_ENST00000446179.1_Missense_Mutation_p.R132H	NM_001282387.1	NP_001269316.1	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								36	51					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103202290	103202290	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr7:103202290C>T	ENST00000424685.2	-	35	5480	c.5321G>A	c.(5320-5322)gGa>gAa	p.G1774E	RELN_ENST00000343529.5_Missense_Mutation_p.G1774E|RELN_ENST00000428762.1_Missense_Mutation_p.G1774E			P78509	RELN_HUMAN	reelin	1774	EGF-like 4.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			NS(3)|breast(8)|central_nervous_system(3)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(4)|kidney(6)|large_intestine(43)|lung(101)|ovary(9)|pancreas(2)|prostate(4)|skin(14)|stomach(2)|upper_aerodigestive_tract(12)|urinary_tract(2)	227				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AATCCCTCGTCCTGAGCACAT	0.468000													5	44					0	0	1	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr10:51093329C>T	ENST00000402038.3	-	4	294	c.295G>A	c.(295-297)Gca>Aca	p.A99T		NM_003631.2	NP_003622.2	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	584					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity	p.A584T(1)		endometrium(5)|kidney(2)|lung(1)|ovary(2)	10				Epithelial(53;0.213)		TGAGCTTCTGCTTCTTCAAGT	0.318000													3	42					0	0	1	0	0
FUT5	2527	broad.mit.edu	37	19	5866758	5866758	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr19:5866758C>T	ENST00000252675.5	-	5	1541	c.979G>A	c.(979-981)Gcc>Acc	p.A327T	FUT5_ENST00000588525.1_Missense_Mutation_p.A327T			Q11128	FUT5_HUMAN	fucosyltransferase 5 (alpha (1,3) fucosyltransferase)	327					L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity			central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(8)|upper_aerodigestive_tract(1)	12						AGGTAGCGGGCGTGGTCCTTG	0.642000													6	30					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60345534	60345534	+	RNA	SNP	G	G	A			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr17:60345534G>A	ENST00000581291.1	-	0	817																				breast(2)|kidney(1)|lung(2)	5						GGGTAGTGACGTGGCTACCAC	0.607000													38	132					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	64045206	64045206	+	Missense_Mutation	SNP	T	T	C			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr15:64045206T>C	ENST00000443617.2	-	8	1940	c.1853A>G	c.(1852-1854)aAa>aGa	p.K618R		NM_003922.3	NP_003913.3	Q15751	HERC1_HUMAN	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	618					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			NS(3)|breast(9)|central_nervous_system(4)|endometrium(23)|haematopoietic_and_lymphoid_tissue(1)|kidney(12)|large_intestine(22)|liver(1)|lung(36)|ovary(7)|prostate(4)|skin(3)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(2)	132						AGCACAAACTTTGCGAATGAA	0.378000													3	41					0	0	1	0	0
OR2T12	127064	broad.mit.edu	37	1	248458774	248458774	+	Missense_Mutation	SNP	G	G	A			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr1:248458774G>A	ENST00000317996.1	-	1	106	c.107C>T	c.(106-108)tCc>tTc	p.S36F		NM_001004692.1	NP_001004692.1	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T, member 12	36					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(4)|kidney(3)|large_intestine(3)|lung(25)|ovary(1)|pancreas(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	43	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GCTAAACAGGGAGGTCAAAAC	0.502000													41	68					0	0	1	0	0
MST1L	11223	broad.mit.edu	37	1	17083776	17083776	+	RNA	SNP	C	C	A	rs56318124		TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr1:17083776C>A	ENST00000455405.2	-	0	812																		p.R674L(1)									CACAGAGACACGCGTGAAGAC	0.537000													3	9					8.12818e-05	8.46686e-05	1	1	0
ABCC11	85320	broad.mit.edu	37	16	48218516	48218516	+	Silent	SNP	C	C	T	rs141323816		TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr16:48218516C>T	ENST00000394747.1	-	22	3442	c.3093G>A	c.(3091-3093)gcG>gcA	p.A1031A	ABCC11_ENST00000565329.1_5'UTR|ABCC11_ENST00000394748.1_Silent_p.A1031A|ABCC11_ENST00000353782.5_Silent_p.A1031A|ABCC11_ENST00000356608.2_Silent_p.A1031A	NM_033151.3	NP_149163.2	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP), member 11	1031	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(3)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(12)|lung(42)|ovary(3)|prostate(2)|skin(5)|urinary_tract(2)	83		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AGTTATTCTGCGCATCAGTCA	0.512000													21	31					0	0	1	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135926349	135926349	+	Nonstop_Mutation	SNP	T	T	G			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr2:135926349T>G	ENST00000264158.8	+	24	2987	c.2944T>G	c.(2944-2946)Tga>Gga	p.*982G	RAB3GAP1_ENST00000487003.1_Intron|RAB3GAP1_ENST00000442034.1_Nonstop_Mutation_p.*989G|ZRANB3_ENST00000412849.1_Intron|RAB3GAP1_ENST00000539493.1_Intron	NM_012233.2	NP_036365.1	Q15042	RB3GP_HUMAN	RAB3 GTPase activating protein subunit 1 (catalytic)	0						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			breast(1)|central_nervous_system(1)|endometrium(5)|kidney(3)|large_intestine(5)|liver(1)|lung(10)|ovary(1)|prostate(1)|skin(3)|urinary_tract(1)	32				BRCA - Breast invasive adenocarcinoma(221;0.117)		TTCCTTCTTCTGATTCTTCTA	0.527000													4	42					0	0	1	0	0
GPAT2	150763	broad.mit.edu	37	2	96690336	96690336	+	Missense_Mutation	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr2:96690336C>T	ENST00000434632.1	-	16	1967	c.1508G>A	c.(1507-1509)aGc>aAc	p.S503N	GPAT2_ENST00000359548.4_Missense_Mutation_p.S503N|GPAT2_ENST00000453542.1_Missense_Mutation_p.S432N|GPAT2_ENST00000377137.3_Missense_Mutation_p.S503N			Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2, mitochondrial	503					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			NS(1)|breast(1)|cervix(1)|endometrium(4)|large_intestine(1)|lung(5)|skin(3)	16						CTGCAGCAGGCTCCGCAGCTG	0.657000													15	35					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90079059	90079059	+	Silent	SNP	C	C	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr5:90079059C>T	ENST00000405460.2	+	66	13446	c.13350C>T	c.(13348-13350)taC>taT	p.Y4450Y	GPR98_ENST00000425867.2_Silent_p.Y111Y	NM_032119.3	NP_115495.3	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98	4450	Calx-beta 30.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			NS(4)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(18)|large_intestine(46)|liver(2)|lung(80)|ovary(12)|pancreas(5)|prostate(1)|skin(50)|stomach(7)|upper_aerodigestive_tract(8)|urinary_tract(6)	269		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTGTTGATTACATTTTGCATG	0.413000													13	77					0	0	1	0	0
FUBP1	8880	broad.mit.edu	37	1	78429977	78429978	+	Frame_Shift_Ins	INS	-	-	T			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr1:78429977_78429978insT	ENST00000370767.1	-	11	988_989	c.901_902insA	c.(901-903)atafs	p.I301fs	FUBP1_ENST00000370768.2_Frame_Shift_Ins_p.I301fs|FUBP1_ENST00000436586.2_Frame_Shift_Ins_p.I322fs			Q96AE4	FUBP1_HUMAN	far upstream element (FUSE) binding protein 1	301	KH 3.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding	p.I301fs*22(1)		central_nervous_system(7)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(4)|lung(1)|upper_aerodigestive_tract(3)	17						ATCATTTTGTATTTTTTTGATC	0.347			"""F, N"""		oligodendroglioma								7	27	---	---	---	---					
ZNF148	7707	broad.mit.edu	37	3	124952039	124952039	+	Frame_Shift_Del	DEL	C	C	-			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr3:124952039delC	ENST00000360647.4	-	9	2016	c.1531delG	c.(1531-1533)gaafs	p.E511fs	ZNF148_ENST00000484491.1_Frame_Shift_Del_p.E511fs|ZNF148_ENST00000492394.1_Frame_Shift_Del_p.E511fs|ZNF148_ENST00000544464.1_Intron|ZNF148_ENST00000497929.1_5'UTR|ZNF148_ENST00000468369.1_Intron|SLC12A8_ENST00000423114.2_Intron|ZNF148_ENST00000485866.1_Frame_Shift_Del_p.E511fs	NM_021964.2	NP_068799.2	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	511					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			breast(3)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(3)|liver(1)|lung(6)|ovary(1)|pancreas(1)|prostate(2)|skin(3)	28						GTGGTACTTTCATCAATGACA	0.438													10	101	---	---	---	---					
FRG1	2483	broad.mit.edu	37	4	190878555	190878556	+	Frame_Shift_Ins	INS	-	-	A			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr4:190878555_190878556insA	ENST00000226798.4	+	6	657_658	c.435_436insA	c.(436-438)aaafs	p.K146fs	FRG1_ENST00000514482.1_3'UTR	NM_004477.2	NP_004468.1	Q14331	FRG1_HUMAN	FSHD region gene 1	146					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus				NS(2)|breast(1)|central_nervous_system(1)|endometrium(2)|lung(11)|ovary(1)|pancreas(1)|prostate(5)|skin(7)|urinary_tract(1)	32		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		TCACTTAGGGGAAAATGGCTTT	0.351													7	20	---	---	---	---					
LOC101060604	101060604	broad.mit.edu	37	16	21469994	21469994	+	RNA	DEL	A	A	-			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr16:21469994delA	ENST00000520823.2	-	0	749																											ACTGTACATTAAAAAAAAAAA	0.294													2	4	---	---	---	---					
SERPINB11	89778	broad.mit.edu	37	18	61388270	61388271	+	RNA	DEL	AC	AC	-			TCGA-RY-A847-01A-11D-A36O-08	TCGA-RY-A847-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9917b575-97ed-48ed-bc5d-8ddf1246fa21	dacc4361-84fe-4fd7-8c3b-0709ce0b7400	g.chr18:61388270_61388271delAC	ENST00000544088.1	+	0	836				SERPINB11_ENST00000538847.1_RNA|SERPINB11_ENST00000382749.5_RNA|SERPINB11_ENST00000536691.1_RNA	NM_080475.2	NP_536723.2	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene)						regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)|cervix(1)|kidney(1)|lung(3)	6		Esophageal squamous(42;0.129)				GTGCATGTTAACACACACACAC	0.386													3	5	---	---	---	---					
