Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
COL6A1	1291	broad.mit.edu	37	21	47417371	47417371	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr21:47417371G>A	ENST00000361866.3	+	21	1549	c.1435G>A	c.(1435-1437)Ggc>Agc	p.G479S		NM_001848.2	NP_001839.2	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1	479	Triple-helical region.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|lung(18)|ovary(1)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	33	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	AGGCTACCGAGGCGATGAGGG	0.662000													8	42					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62022892	62022892	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr17:62022892G>A	ENST00000435607.1	-	19	3624	c.3548C>T	c.(3547-3549)gCc>gTc	p.A1183V	SCN4A_ENST00000578147.1_Missense_Mutation_p.A1183V	NM_000334.4	NP_000325.4	P35499	SCN4A_HUMAN	sodium channel, voltage-gated, type IV, alpha subunit	1183					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.A1183V(1)		breast(4)|central_nervous_system(3)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(23)|lung(40)|ovary(3)|pancreas(1)|prostate(6)|skin(4)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	101					Lamotrigine(DB00555)	GAACTTGCCGGCAAACAGGTT	0.542000													5	273					0	0	1	0	0
DNHD1	144132	broad.mit.edu	37	11	6519690	6519690	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr11:6519690G>A	ENST00000254579.6	+	3	809	c.245G>A	c.(244-246)cGc>cAc	p.R82H	DNHD1_ENST00000354685.3_Missense_Mutation_p.R82H|DNHD1_ENST00000527990.2_Missense_Mutation_p.R82H|DNHD1_ENST00000477562.1_3'UTR	NM_144666.2	NP_653267.2	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1	82					microtubule-based movement	dynein complex	microtubule motor activity			NS(1)|autonomic_ganglia(1)|breast(4)|endometrium(13)|kidney(6)|large_intestine(11)|lung(14)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	55		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GCAGCTTGGCGCTATCTTCAT	0.557000													18	105					0	0	1	0	0
TEKT1	83659	broad.mit.edu	37	17	6704170	6704170	+	Silent	SNP	C	C	T			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr17:6704170C>T	ENST00000338694.2	-	7	1074	c.945G>A	c.(943-945)acG>acA	p.T315T	TEKT1_ENST00000535086.1_Silent_p.T169T	NM_053285.1	NP_444515.1	Q969V4	TEKT1_HUMAN	tektin 1	315					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				NS(1)|central_nervous_system(1)|endometrium(3)|large_intestine(5)|lung(6)|ovary(1)|prostate(1)|skin(1)|stomach(1)	20		Myeloproliferative disorder(207;0.0255)				TCTCCAAGCGCGTATGAGCCA	0.502000											OREG0024124	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	160					0	0	1	0	0
ZNF280D	54816	broad.mit.edu	37	15	56924126	56924126	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr15:56924126T>C	ENST00000559237.1	-	21	3154	c.2471A>G	c.(2470-2472)gAa>gGa	p.E824G	ZNF280D_ENST00000267807.7_Missense_Mutation_p.E837G	NM_001002843.1	NP_001002843.1	Q6N043	Z280D_HUMAN	zinc finger protein 280D	837					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(5)|kidney(4)|large_intestine(7)|lung(12)|ovary(1)|skin(1)	30				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		TTTTTTCTTTTCCACTTTATC	0.353000													40	166					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32632685	32632685	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr9:32632685A>G	ENST00000242310.4	-	1	2982	c.2893T>C	c.(2893-2895)Tgt>Cgt	p.C965R		NM_153809.2	NP_722516.1	Q8IZX4	TAF1L_HUMAN	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like	965					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			breast(6)|central_nervous_system(4)|endometrium(14)|kidney(11)|large_intestine(32)|liver(2)|lung(68)|ovary(2)|pancreas(2)|prostate(7)|skin(9)|stomach(1)|upper_aerodigestive_tract(1)	159			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TCTAGGAGACACTTGCCCTTC	0.468000													26	109					0	0	1	0	0
ELK4	2005	broad.mit.edu	37	1	205585723	205585723	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr1:205585723T>C	ENST00000357992.4	-	5	1586	c.1247A>G	c.(1246-1248)gAt>gGt	p.D416G		NM_001973.3	NP_001964.2			ELK4, ETS-domain protein (SRF accessory protein 1)										SLC45A3/ELK4(18)	breast(1)|endometrium(1)|kidney(2)|large_intestine(1)|lung(6)|skin(1)	12	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GGAAGGTCCATCCAGCCCAGA	0.453000			T	SLC45A3	prostate								6	56					0	0	1	0	0
TUBB8P7	197331	broad.mit.edu	37	16	90161994	90161994	+	RNA	SNP	G	G	A	rs28608881		TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr16:90161994G>A	ENST00000567960.1	+	0	730				TUBB8P7_ENST00000564451.1_RNA																							TGCGCTTCCCGGGCCAGCTGA	0.592000													4	26					0	0	1	0	0
WDR27	253769	broad.mit.edu	37	6	170070679	170070679	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr6:170070679T>A	ENST00000333572.6	-	4	961	c.442A>T	c.(442-444)Atg>Ttg	p.M148L	WDR27_ENST00000420344.2_Missense_Mutation_p.M148L|WDR27_ENST00000448612.1_Missense_Mutation_p.M148L|WDR27_ENST00000423258.1_Intron			A2RRH5	WDR27_HUMAN	WD repeat domain 27	148										endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(5)|pancreas(1)|skin(1)	12		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		ATATCCAGCATGAATATTTTG	0.493000													12	52					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23897871	23897871	+	Silent	SNP	G	G	A			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr14:23897871G>A	ENST00000355349.3	-	15	1578	c.1416C>T	c.(1414-1416)agC>agT	p.S472S		NM_000257.2	NP_000248.2	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	472	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			NS(3)|breast(4)|central_nervous_system(2)|cervix(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(19)|lung(57)|ovary(5)|prostate(9)|skin(5)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	137	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCTGCTCAAAGCTGTTGAACT	0.577000													4	61					0	0	1	0	0
METTL2A	339175	broad.mit.edu	37	17	60526028	60526028	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr17:60526028A>G	ENST00000311506.5	+	9	1111	c.1075A>G	c.(1075-1077)Aca>Gca	p.T359A		NM_181725.3	NP_859076.3	Q96IZ6	MTL2A_HUMAN	methyltransferase like 2A	359							methyltransferase activity			breast(2)|central_nervous_system(1)|endometrium(1)|upper_aerodigestive_tract(2)	6			BRCA - Breast invasive adenocarcinoma(2;1.08e-10)			AAAGCAACTGACAATGTACCG	0.532000													4	199					0	0	1	0	0
KMT2C	58508	broad.mit.edu	37	7	151864270	151864270	+	Silent	SNP	A	A	G			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr7:151864270A>G	ENST00000355193.2	-	42	9929	c.9711T>C	c.(9709-9711)gtT>gtC	p.V3237V	KMT2C_ENST00000262189.6_Silent_p.V3237V					lysine (K)-specific methyltransferase 2C																		GCTGTTCAGTAACATGCTTGA	0.393000													20	112					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983325	97983325	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr3:97983325G>T	ENST00000383696.2	+	1	238	c.197G>T	c.(196-198)tGg>tTg	p.W66L	RP11-325B23.2_ENST00000508616.1_lincRNA	NM_001005479.1	NP_001005479.1	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H, member 6 (gene/pseudogene)	66					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			cervix(2)|endometrium(1)|large_intestine(4)|lung(20)|ovary(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	34						GTTCTCATCTGGAAAGACCCT	0.418000													9	304					3.09899e-07	3.09899e-07	1	1	0
DNM1P47	100216544	broad.mit.edu	37	15	102305092	102305092	+	RNA	SNP	A	A	G			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr15:102305092A>G	ENST00000561463.1	+	0	13138																											CATGAACACCATCAGCACAGC	0.632000													3	23					0	0	1	0	0
DNM1P47	100216544	broad.mit.edu	37	15	102305084	102305084	+	RNA	SNP	T	T	C			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr15:102305084T>C	ENST00000561463.1	+	0	13130																											GACATCAACATGAACACCATC	0.632000													3	22					0	0	1	0	0
LOC101927209	101927209	broad.mit.edu	37	1	142713944	142713944	+	RNA	SNP	C	C	T			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr1:142713944C>T	ENST00000610091.1	-	0	1714																											TGATTACCTCCGAAGTTAAAG	0.308000													6	39					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95178176	95178176	+	Silent	SNP	A	A	G			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr8:95178176A>G	ENST00000027335.3	-	10	1219	c.1095T>C	c.(1093-1095)caT>caC	p.H365H	CDH17_ENST00000441892.2_Silent_p.H151H|CDH17_ENST00000450165.2_Silent_p.H365H	NM_004063.3	NP_004054.3	Q12864	CAD17_HUMAN	cadherin 17, LI cadherin (liver-intestine)	365	Cadherin 4.					integral to membrane	calcium ion binding			NS(1)|endometrium(5)|kidney(3)|large_intestine(10)|lung(18)|ovary(6)|prostate(3)|skin(4)|stomach(2)	52	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			CATCCCTGTCATGTGCAGTAA	0.408000													8	44					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47682296	47682296	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr6:47682296C>T	ENST00000283303.2	+	6	1573	c.1315C>T	c.(1315-1317)Cgt>Tgt	p.R439C	GPR115_ENST00000371220.1_Missense_Mutation_p.R496C|GPR115_ENST00000327753.3_Missense_Mutation_p.R439C	NM_153838.3	NP_722580.3	Q8IZF3	GP115_HUMAN	G protein-coupled receptor 115	439					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity	p.R439C(1)		NS(1)|breast(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(24)|ovary(3)|pancreas(1)|prostate(1)|skin(5)|upper_aerodigestive_tract(2)	52						ATCATACATGCGTCACGTGTG	0.483000													32	129					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000345146.2_Missense_Mutation_p.R132H|IDH1_ENST00000446179.1_Missense_Mutation_p.R132H	NM_001282387.1	NP_001269316.1	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								9	85					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55659164	55659164	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr6:55659164delC	ENST00000370830.3	-	3	1443	c.745delG	c.(745-747)gtcfs	p.V249fs	BMP5_ENST00000446683.2_Frame_Shift_Del_p.V249fs	NM_021073.2	NP_066551.1	P22003	BMP5_HUMAN	bone morphogenetic protein 5	249					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(6)|lung(19)|ovary(2)|prostate(1)|skin(7)|upper_aerodigestive_tract(1)	45	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			ATATCAAAGACAAGCCAACCC	0.403													22	128	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	AGGGGCAGGGGCAAGGGCAGGGGC	-	rs56192595		TCGA-DU-A7TG-01A-21D-A34J-08	TCGA-DU-A7TG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	926f2cf8-a060-403b-9fc4-cbe215eadef2	5c0ba5c6-4188-4cfc-88e3-78ba50bca8b1	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	ENST00000341735.3	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)gaggggcaggggcaagggcaggggcag>gag	p.GQGQGQGQ195del	MESP2_ENST00000558723.1_Intron|MESP2_ENST00000560219.1_Intron	NM_001039958.1	NP_001035047.1	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog (mouse)	195	13 X 2 AA tandem repeats of G-Q.				Notch signaling pathway	nucleus	DNA binding	p.Q198_G205delQGQGQGQG(1)		kidney(1)|large_intestine(2)|lung(1)|skin(1)|upper_aerodigestive_tract(1)	6	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.777													6	11	---	---	---	---					
