Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HNRNPA0	10949	broad.mit.edu	37	5	137089260	137089260	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr5:137089260G>A	ENST00000314940.4	-	1	779	c.496C>T	c.(496-498)Cat>Tat	p.H166Y		NM_006805.3	NP_006796.1	Q13151	ROA0_HUMAN	heterogeneous nuclear ribonucleoprotein A0	166	RRM 2.				nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|RNA binding			large_intestine(1)|lung(2)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCCACGCGATGGCCCTGAATC	0.642000													8	10					0	0	1	0	0
PRDM10	56980	broad.mit.edu	37	11	129814836	129814836	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr11:129814836G>A	ENST00000358825.5	-	6	823	c.592C>T	c.(592-594)Cgg>Tgg	p.R198W	PRDM10_ENST00000526082.1_Missense_Mutation_p.R112W|PRDM10_ENST00000304538.6_Missense_Mutation_p.R112W|PRDM10_ENST00000528746.1_Missense_Mutation_p.R172W|PRDM10_ENST00000423662.2_Missense_Mutation_p.R112W|PRDM10_ENST00000360871.3_Missense_Mutation_p.R198W	NM_020228.2	NP_064613.2	Q9NQV6	PRD10_HUMAN	PR domain containing 10	198					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|endometrium(6)|kidney(3)|large_intestine(14)|lung(15)|pancreas(2)|skin(1)|stomach(3)|urinary_tract(2)	48	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		AGCACCGGCCGGTTGGGGATC	0.617000													4	56					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30275430	30275430	+	Silent	SNP	C	C	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr18:30275430C>T	ENST00000359358.4	-	4	1593	c.1155G>A	c.(1153-1155)ccG>ccA	p.P385P		NM_020805.1	NP_065856.1	Q9P2G3	KLH14_HUMAN	kelch-like family member 14	385						cytosol|endoplasmic reticulum membrane				breast(3)|central_nervous_system(1)|endometrium(1)|large_intestine(4)|lung(20)|ovary(2)	31						AGTTACCATTCGGATTCCACT	0.418000													3	28					0	0	1	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305839	39305839	+	Missense_Mutation	SNP	A	A	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr17:39305839A>T	ENST00000343246.4	-	1	215	c.181T>A	c.(181-183)Tgc>Agc	p.C61S		NM_033188.3	NP_149445.3	Q9BYR2	KRA45_HUMAN	keratin associated protein 4-5	61	27 X 5 AA repeats of C-C-[GRQVCHIEK]- [SPTR]-[VSTQYC].					keratin filament				central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|lung(4)	6		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ctggagatgcagcagctaggg	0.667000													3	29					0	0	1	0	0
AACS	65985	broad.mit.edu	37	12	125603203	125603203	+	Nonsense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr12:125603203G>A	ENST00000316519.6	+	10	1219	c.1013G>A	c.(1012-1014)tGg>tAg	p.W338*	AACS_ENST00000316543.10_5'UTR|AACS_ENST00000261686.6_Nonsense_Mutation_p.W338*	NM_023928.3	NP_076417.2	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	338					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			breast(1)|central_nervous_system(1)|cervix(1)|large_intestine(4)|liver(1)|lung(16)|ovary(1)|stomach(1)	26	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		TGGATGATGTGGAACTGGATG	0.652000													9	12					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29779937	29779937	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr10:29779937G>A	ENST00000375398.2	-	24	4480	c.4031C>T	c.(4030-4032)tCc>tTc	p.S1344F	SVIL_ENST00000375400.3_Missense_Mutation_p.S918F|SVIL_ENST00000538146.1_Missense_Mutation_p.S136F|SVIL_ENST00000535393.1_Missense_Mutation_p.S258F|SVIL_ENST00000355867.4_Missense_Mutation_p.S1344F			O95425	SVIL_HUMAN	supervillin	1344					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			breast(1)|central_nervous_system(3)|cervix(1)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(24)|lung(35)|ovary(8)|prostate(2)|skin(4)|stomach(7)|upper_aerodigestive_tract(2)|urinary_tract(2)	112		Breast(68;0.103)				CTCGGCCACGGAAGACGTCAA	0.587000													4	26					0	0	1	0	0
CELF1	10658	broad.mit.edu	37	11	47498502	47498502	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr11:47498502G>A	ENST00000395290.2	-	9	905	c.896C>T	c.(895-897)tCa>tTa	p.S299L	CELF1_ENST00000531165.1_Missense_Mutation_p.S328L|CELF1_ENST00000532048.1_Missense_Mutation_p.S326L|CELF1_ENST00000358597.3_Missense_Mutation_p.S300L|CELF1_ENST00000310513.5_Missense_Mutation_p.S296L|CELF1_ENST00000361904.3_Missense_Mutation_p.S297L|CELF1_ENST00000395292.2_Missense_Mutation_p.S297L	NM_001025596.2|NM_001172640.1	NP_001020767.1|NP_001166111.1	Q92879	CELF1_HUMAN	CUGBP, Elav-like family member 1	300	Ser-rich.				embryo development|mRNA splice site selection|regulation of RNA splicing|RNA interference	cytoplasm|nucleus|ribonucleoprotein complex	BRE binding|mRNA binding|nucleotide binding|translation repressor activity, nucleic acid binding			central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(8)|ovary(2)	18						AGAGCTAGGTGAGGACCCTGC	0.463000													26	34					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769470	88769470	+	RNA	SNP	C	C	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr10:88769470C>T	ENST00000444431.1	+	0	4070				RP11-96C23.14_ENST00000444180.3_RNA|RP11-96C23.5_ENST00000433214.2_RNA			Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase activating protein 11						regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding										GGGAGGGAGACGGCTGCACGG	0.672000													36	81					0	0	1	0	0
ZNF773	374928	broad.mit.edu	37	19	58018648	58018648	+	Missense_Mutation	SNP	C	C	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr19:58018648C>A	ENST00000282292.4	+	4	1325	c.1185C>A	c.(1183-1185)ttC>ttA	p.F395L	ZNF773_ENST00000593916.1_Intron|ZNF773_ENST00000599847.1_Intron|ZNF773_ENST00000598770.1_Missense_Mutation_p.F394L	NM_198542.1	NP_940944.1	Q6PK81	ZN773_HUMAN	zinc finger protein 773	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(4)|kidney(2)|large_intestine(5)|lung(6)|ovary(1)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	22		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		GTGGGAGATTCTTTAGTGAGA	0.423000													42	31					1.8453e-21	1.89261e-21	1	1	0
SPP2	6694	broad.mit.edu	37	2	234959502	234959502	+	Silent	SNP	C	C	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr2:234959502C>T	ENST00000168148.3	+	1	160	c.72C>T	c.(70-72)taC>taT	p.Y24Y	SPP2_ENST00000492481.1_3'UTR|SPP2_ENST00000373368.1_Silent_p.Y24Y	NM_006944.2	NP_008875.1	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa	24					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity			breast(1)|kidney(1)|large_intestine(2)|lung(6)|prostate(1)|skin(1)	12		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		GAATGAACTACTGGTCTTGCT	0.473000													49	88					0	0	1	0	0
FAIM	55179	broad.mit.edu	37	3	138351879	138351879	+	Silent	SNP	T	T	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr3:138351879T>G	ENST00000338446.4	+	6	1283	c.600T>G	c.(598-600)acT>acG	p.T200T	FAIM_ENST00000360570.3_Silent_p.T188T|FAIM_ENST00000464668.1_Silent_p.T166T|FAIM_ENST00000393034.2_Silent_p.T166T|FAIM_ENST00000393035.2_Silent_p.T166T	NM_001033030.1	NP_001028202.1	Q9NVQ4	FAIM1_HUMAN	Fas apoptotic inhibitory molecule	166					apoptosis	cytoplasm				kidney(1)|upper_aerodigestive_tract(1)	2						TTATTCATACTCTCATTGTGG	0.358000													33	42					0	0	1	0	0
CYP3A43	64816	broad.mit.edu	37	7	99453218	99453218	+	Silent	SNP	C	C	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr7:99453218C>T	ENST00000354829.2	+	8	778	c.675C>T	c.(673-675)ctC>ctT	p.L225L	CYP3A43_ENST00000415413.1_Intron|CYP3A43_ENST00000417625.1_Silent_p.L115L|CYP3A43_ENST00000477658.1_3'UTR|CYP3A43_ENST00000342499.4_Intron|CYP3A43_ENST00000444905.1_Intron|CYP3A43_ENST00000312017.5_Silent_p.L225L|CYP3A43_ENST00000222382.5_Silent_p.L225L	NM_022820.3|NM_057095.1	NP_073731.1|NP_476436.1	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A, polypeptide 43	225			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			breast(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(9)|ovary(1)|prostate(1)|skin(1)	19	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	CTATAGCACTCTTTCCATTTC	0.279000													14	20					0	0	1	0	0
MLIP	90523	broad.mit.edu	37	6	53989659	53989659	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr6:53989659G>A	ENST00000514921.1	+	3	721	c.608G>A	c.(607-609)gGg>gAg	p.G203E	MLIP_ENST00000370877.2_Missense_Mutation_p.G151E|MLIP_ENST00000370876.2_Missense_Mutation_p.G141E|MLIP_ENST00000502396.1_Missense_Mutation_p.G214E|MLIP_ENST00000358276.5_Missense_Mutation_p.G197E|MLIP_ENST00000511744.1_3'UTR|MLIP_ENST00000509997.1_Missense_Mutation_p.G151E|MLIP_ENST00000274897.5_Missense_Mutation_p.G203E	NM_001281746.1	NP_001268675.1	Q5VWP3	MLIP_HUMAN	muscular LMNA-interacting protein	203						nuclear envelope|PML body	protein binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(1)|lung(16)|ovary(8)|skin(4)|stomach(1)|urinary_tract(1)	34						CAAAAGCATGGGCAGGTAGGT	0.493000													9	18					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31535869	31535869	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr22:31535869A>G	ENST00000215885.3	-	1	724	c.472T>C	c.(472-474)Tgg>Cgg	p.W158R		NM_015715.3	NP_056530.2	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III	158	Phospholipase A2-like.				cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity			large_intestine(1)|lung(10)|ovary(1)|prostate(2)|skin(3)|urinary_tract(1)	18						ACTCCACACCACAGTGTGCCA	0.622000													12	18					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000345146.2_Missense_Mutation_p.R132H|IDH1_ENST00000446179.1_Missense_Mutation_p.R132H	NM_001282387.1	NP_001269316.1	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								16	39					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80408515	80408515	+	Missense_Mutation	SNP	C	C	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr5:80408515C>T	ENST00000265080.4	+	14	1992	c.1925C>T	c.(1924-1926)gCc>gTc	p.A642V		NM_006909.2	NP_008840.1	O14827	RGRF2_HUMAN	Ras protein-specific guanine nucleotide-releasing factor 2	642	N-terminal Ras-GEF.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			biliary_tract(1)|breast(5)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(28)|ovary(5)|prostate(3)|skin(4)|soft_tissue(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	75		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		ATCCGTTATGCCAGCGTGGAG	0.483000													4	205					0	0	1	0	0
CEP120	153241	broad.mit.edu	37	5	122754074	122754074	+	Missense_Mutation	SNP	C	C	T			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr5:122754074C>T	ENST00000306467.5	-	2	489	c.185G>A	c.(184-186)aGg>aAg	p.R62K	CEP120_ENST00000328236.5_Missense_Mutation_p.R62K|CEP120_ENST00000306481.6_Missense_Mutation_p.R36K|CEP120_ENST00000395431.2_Missense_Mutation_p.R62K			Q8N960	CE120_HUMAN	centrosomal protein 120kDa	62						centrosome				breast(3)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(4)|large_intestine(8)|lung(8)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	29						AAGCGCTTTCCTGTCAATTTC	0.383000													19	23					0	0	1	0	0
CAPN9	10753	broad.mit.edu	37	1	230903392	230903392	+	Missense_Mutation	SNP	G	G	C			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr1:230903392G>C	ENST00000354537.1	+	5	724	c.642G>C	c.(640-642)gaG>gaC	p.E214D	CAPN9_ENST00000366666.2_Missense_Mutation_p.E151D|RP11-99J16__A.2_ENST00000412344.1_RNA|CAPN9_ENST00000271971.2_Missense_Mutation_p.E214D	NM_016452.1	NP_057536.1	O14815	CAN9_HUMAN	calpain 9	214	Calpain catalytic.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			autonomic_ganglia(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(12)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	25	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				AGGCCCCCGAGAACTTCTATG	0.537000													39	51					0	0	1	0	0
TXNDC16	57544	broad.mit.edu	37	14	52985913	52985913	+	Missense_Mutation	SNP	T	T	C			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr14:52985913T>C	ENST00000281741.4	-	7	862	c.491A>G	c.(490-492)tAt>tGt	p.Y164C	TXNDC16_ENST00000554399.1_Intron	NM_001160047.1|NM_020784.2	NP_001153519.1|NP_065835.2	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16	164					cell redox homeostasis	extracellular region				breast(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(10)|prostate(3)|skin(1)	21	Breast(41;0.0716)					GGCTCTTACATATGAGAATAT	0.318000													22	10					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	T	C	rs60558629		TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr1:12887612T>C	ENST00000535591.1	-	3	440	c.245A>G	c.(244-246)cAt>cGt	p.H82R		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	82								p.H82R(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						GAAGCACCCATGGGCCATAGC	0.488000													4	124					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22710761	22710761	+	Silent	SNP	A	A	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr21:22710761A>G	ENST00000400546.1	+	8	1200	c.951A>G	c.(949-951)caA>caG	p.Q317Q	NCAM2_ENST00000284894.7_Silent_p.Q175Q|NCAM2_ENST00000535285.1_Silent_p.Q342Q	NM_004540.3	NP_004531.2	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2	317	Ig-like C2-type 4.				neuron cell-cell adhesion	integral to membrane|plasma membrane				breast(4)|cervix(2)|endometrium(8)|kidney(6)|large_intestine(22)|liver(4)|lung(49)|ovary(4)|prostate(4)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	108		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AGAATGGTCAAGTCACACTCG	0.393000													14	27					0	0	1	0	0
DNAI1	27019	broad.mit.edu	37	9	34493301	34493301	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr9:34493301G>A	ENST00000242317.4	+	9	962	c.791G>A	c.(790-792)aGg>aAg	p.R264K	DNAI1_ENST00000488369.1_3'UTR	NM_001281428.1|NM_012144.2	NP_001268357.1|NP_036276.1	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	264					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity			autonomic_ganglia(1)|endometrium(7)|kidney(1)|large_intestine(8)|lung(13)|prostate(1)|skin(2)|urinary_tract(1)	34	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		ATGGCCATGAGGAAGCTGACA	0.478000									Kartagener syndrome				18	30					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399083	46399083	+	Missense_Mutation	SNP	C	C	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr3:46399083C>G	ENST00000292301.4	+	2	550	c.65C>G	c.(64-66)aCc>aGc	p.T22S	CCR2_ENST00000445132.2_Missense_Mutation_p.T22S|CCR2_ENST00000400888.2_Missense_Mutation_p.T22S|CCR2_ENST00000465202.1_Intron	NM_001123041.2	NP_001116513.2	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2	22					astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			breast(3)|endometrium(1)|large_intestine(1)|liver(2)|lung(7)	14				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		GAAGTCACCACCTTTTTTGAT	0.468000													32	52					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43109996	43109996	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr6:43109996G>A	ENST00000230419.4	+	13	2227	c.2006G>A	c.(2005-2007)aGc>aAc	p.S669N	PTK7_ENST00000349241.2_Missense_Mutation_p.S539N|PTK7_ENST00000352931.2_Intron|PTK7_ENST00000481273.1_Missense_Mutation_p.S677N|PTK7_ENST00000345201.2_Missense_Mutation_p.S629N	NM_002821.4	NP_002812.2	Q13308	PTK7_HUMAN	protein tyrosine kinase 7	669	Ig-like C2-type 7.				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			NS(1)|breast(4)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(12)|lung(12)|ovary(2)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	46			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GCAGGCAACAGCTGCAACATC	0.597000													16	22					0	0	1	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296167	39296167	+	Silent	SNP	A	A	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr17:39296167A>G	ENST00000345847.4	-	1	572	c.573T>C	c.(571-573)atT>atC	p.I191I		NM_030976.1	NP_112238.1	Q9BYQ5	KRA46_HUMAN	keratin associated protein 4-6	187						keratin filament				endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|lung(1)|prostate(1)|urinary_tract(1)	9						GGCAGGTGGAAATGACACAGG	0.627000													4	11					0	0	1	0	0
ZNF543	125919	broad.mit.edu	37	19	57835059	57835059	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr19:57835059A>G	ENST00000321545.4	+	2	373	c.28A>G	c.(28-30)Acc>Gcc	p.T10A		NM_213598.3	NP_998763.2	Q08ER8	ZN543_HUMAN	zinc finger protein 543	10	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|kidney(2)|large_intestine(8)|lung(11)|pancreas(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)	28		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GGTGTCTGTGACCTTTGAGGA	0.493000													27	11					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33650337	33650337	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr6:33650337A>G	ENST00000374316.5	+	35	5573	c.4513A>G	c.(4513-4515)Acc>Gcc	p.T1505A	ITPR3_ENST00000605930.1_Missense_Mutation_p.T1505A			Q14573	ITPR3_HUMAN	inositol 1,4,5-trisphosphate receptor, type 3	1505					activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			NS(1)|breast(6)|central_nervous_system(5)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(18)|liver(1)|lung(24)|ovary(8)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(2)	85						GCTGCAGTCTACCACACGCCT	0.662000													25	42					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	C	G	rs58074988		TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr1:12887606C>G	ENST00000535591.1	-	3	446	c.251G>C	c.(250-252)tGc>tCc	p.C84S		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	84								p.C84S(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						ATTGAGGAAGCACCCATGGGC	0.483000													4	125					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33578596	33578596	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr20:33578596G>A	ENST00000262873.7	+	21	2251	c.2159G>A	c.(2158-2160)cGc>cAc	p.R720H		NM_020884.3	NP_065935.2	A7E2Y1	MYH7B_HUMAN	myosin, heavy chain 7B, cardiac muscle, beta	678	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			NS(2)|breast(5)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(8)|lung(19)|ovary(5)|prostate(3)|upper_aerodigestive_tract(2)|urinary_tract(3)	54			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CACTTCGTCCGCTGCATTGTC	0.627000													26	26					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452455	138452455	+	Missense_Mutation	SNP	G	G	C			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr4:138452455G>C	ENST00000344876.4	-	1	1174	c.788C>G	c.(787-789)aCt>aGt	p.T263S	PCDH18_ENST00000507846.1_Missense_Mutation_p.T43S|PCDH18_ENST00000412923.2_Missense_Mutation_p.T263S|PCDH18_ENST00000511115.1_Intron|PCDH18_ENST00000510305.1_Intron	NM_019035.3	NP_061908.1	Q9HCL0	PCD18_HUMAN	protocadherin 18	263	Cadherin 3.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(27)|lung(21)|ovary(2)|pancreas(4)|prostate(3)|skin(12)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	86	all_hematologic(180;0.24)					TAAGAGCAAAGTGCCAACCGG	0.413000													31	12					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29632654	29632654	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr20:29632654A>G	ENST00000278882.3	+	8	849	c.469A>G	c.(469-471)Aaa>Gaa	p.K157E	FRG1B_ENST00000358464.4_Missense_Mutation_p.K157E																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						TAAAATAAGTAAAGAAGAGAG	0.308000													40	642					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075528	9075528	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr19:9075528G>A	ENST00000397910.4	-	3	12121	c.11918C>T	c.(11917-11919)gCg>gTg	p.A3973V		NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	3975	Ser-rich.|Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						TTTGGATGACGCTGAGTGGGC	0.488000													8	13					0	0	1	0	0
FUBP1	8880	broad.mit.edu	37	1	78422268	78422271	+	Frame_Shift_Del	DEL	GTTT	GTTT	-			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr1:78422268_78422271delGTTT	ENST00000370767.1	-	17	1778_1781	c.1691_1694delAAAC	c.(1690-1695)caaactfs	p.QT564fs	FUBP1_ENST00000436586.2_Frame_Shift_Del_p.QT585fs|FUBP1_ENST00000370768.2_Frame_Shift_Del_p.QT564fs			Q96AE4	FUBP1_HUMAN	far upstream element (FUSE) binding protein 1	564					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(7)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(4)|lung(1)|upper_aerodigestive_tract(3)	17						TTGTCCATTAGTTTGAGTTGTAGT	0.407			"""F, N"""		oligodendroglioma								15	16	---	---	---	---					
RBMXL1	494115	broad.mit.edu	37	1	89448604	89448605	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr1:89448604_89448605insGG	ENST00000399794.2	-	3	1620_1621	c.905_906insCC	c.(904-906)ccafs	p.P302fs	CCBL2_ENST00000260508.4_Intron|CCBL2_ENST00000370485.2_Intron|RBMXL1_ENST00000321792.5_Frame_Shift_Ins_p.P302fs|CCBL2_ENST00000446900.2_Intron|CCBL2_ENST00000370491.3_Intron	NM_001162536.2	NP_001156008.1	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	302	Ser-rich.						nucleotide binding|RNA binding										CACCATAAGATGGCGGGGGCCC	0.475													8	95	---	---	---	---					
CCDC173	129881	broad.mit.edu	37	2	170506899	170506902	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr2:170506899_170506902delTCTT	ENST00000447353.1	-	7	1194_1197	c.1089_1092delAAGA	c.(1087-1092)gaaagafs	p.ER363fs		NM_001085447.1	NP_001078916.1			coiled-coil domain containing 173																		CATCTTTTTCTCTTTCTCTTTTTT	0.309													5	11	---	---	---	---					
AC073321.4	0	broad.mit.edu	37	2	217475032	217475032	+	RNA	DEL	A	A	-	rs71401156		TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr2:217475032delA	ENST00000441803.1	+	0	195																											ATTTTATTTCAAAAAAAAAAA	0.373													4	2	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42795433	42795433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QH-A6X4-01A-51D-A32B-08	TCGA-QH-A6X4-10B-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd92c1a-5310-48e7-887f-e1336b1cff21	ee07165f-dd39-44ce-bbd3-5ebaa3afeb95	g.chr19:42795433delT	ENST00000572681.2	+	11	5308	c.5240delT	c.(5239-5241)gtgfs	p.V1747fs	CIC_ENST00000575354.2_Frame_Shift_Del_p.V838fs|CIC_ENST00000160740.3_Frame_Shift_Del_p.V838fs			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	838					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				CAGCTTCAGGTGGCACCTGCC	0.682			"""Mis, F, S"""		oligodendroglioma								9	5	---	---	---	---					
