Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NPBWR2	2832	broad.mit.edu	37	20	62737689	62737689	+	Missense_Mutation	SNP	C	C	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr20:62737689C>T	ENST00000369768.1	-	1	835	c.496G>A	c.(496-498)Gcc>Acc	p.A166T		NM_005286.2	NP_005277.2	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	166						plasma membrane	opioid receptor activity|protein binding			haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(1)|lung(12)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	18	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CACAGGCTGGCGACCTTCGCC	0.647000													4	26					0	0	1	0	0
KIF23	9493	broad.mit.edu	37	15	69727846	69727846	+	Missense_Mutation	SNP	C	C	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr15:69727846C>T	ENST00000260363.4	+	11	1214	c.1097C>T	c.(1096-1098)aCg>aTg	p.T366M	KIF23_ENST00000559279.1_Missense_Mutation_p.T366M|KIF23_ENST00000395392.2_Missense_Mutation_p.T366M|KIF23_ENST00000537891.1_Missense_Mutation_p.T183M|KIF23_ENST00000558585.1_Missense_Mutation_p.T183M|KIF23_ENST00000352331.4_Missense_Mutation_p.T366M	NM_138555.2	NP_612565.1	Q02241	KIF23_HUMAN	kinesin family member 23	366					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding			central_nervous_system(1)|endometrium(4)|large_intestine(7)|lung(6)|prostate(2)|skin(1)	21						TCACTAATGACGCTAAGAACA	0.353000													15	53					0	0	1	0	0
TOP3A	7156	broad.mit.edu	37	17	18181116	18181116	+	Missense_Mutation	SNP	G	G	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr17:18181116G>T	ENST00000321105.5	-	18	2914	c.2700C>A	c.(2698-2700)agC>agA	p.S900R	TOP3A_ENST00000542570.1_Missense_Mutation_p.S805R|TOP3A_ENST00000540524.1_Missense_Mutation_p.S430R	NM_004618.3	NP_004609.1	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	900	2 X 27 AA approximate repeats.				DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(7)|lung(15)|ovary(1)|skin(6)|stomach(2)|urinary_tract(1)	36						CGGAGGGCTGGCTGCAAAGGC	0.622000													23	45					1.10513e-12	1.23909e-12	1	1	0
CHRFAM7A	89832	broad.mit.edu	37	15	30664498	30664498	+	Missense_Mutation	SNP	C	C	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr15:30664498C>A	ENST00000397827.3	-	6	876	c.102G>T	c.(100-102)gaG>gaT	p.E34D	CHRFAM7A_ENST00000401522.3_Missense_Mutation_p.E34D|CHRFAM7A_ENST00000299847.2_Missense_Mutation_p.E125D	NM_148911.1	NP_683709.1	Q494W8	CRFM7_HUMAN	CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion	125						integral to membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity			large_intestine(3)|lung(1)|skin(2)	6		all_lung(180;3.42e-11)|Breast(32;0.000153)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		CAGGGTAGGGCTCTTTGCAGC	0.542000													10	27					0.000442599	0.000467891	1	1	0
FES	2242	broad.mit.edu	37	15	91433669	91433669	+	Missense_Mutation	SNP	G	G	C			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr15:91433669G>C	ENST00000328850.3	+	10	1417	c.1275G>C	c.(1273-1275)gaG>gaC	p.E425D	FES_ENST00000448367.1_3'UTR|FES_ENST00000450438.2_Missense_Mutation_p.E367D|FES_ENST00000444422.2_Missense_Mutation_p.E425D|FES_ENST00000414248.2_Missense_Mutation_p.E367D|FES_ENST00000394302.1_Missense_Mutation_p.E367D|FES_ENST00000394300.3_Missense_Mutation_p.E367D	NM_002005.3	NP_001996.1	P07332	FES_HUMAN	feline sarcoma oncogene	425					axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CCACGCTGGAGATCCTTAAGA	0.612000													22	41					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39225411	39225411	+	Silent	SNP	G	G	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr3:39225411G>A	ENST00000340369.3	-	2	5754	c.5526C>T	c.(5524-5526)gcC>gcT	p.A1842A	XIRP1_ENST00000396251.1_3'UTR|XIRP1_ENST00000421646.1_Silent_p.A525A	NM_194293.2	NP_919269.2	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1842	Interaction with FLNC.						actin binding			breast(4)|central_nervous_system(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(14)|lung(22)|ovary(4)|pancreas(1)|prostate(2)|skin(6)	71				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GGCCTCACTGGGCAGCTGGCT	0.637000													10	13					0	0	1	0	0
UAP1	6675	broad.mit.edu	37	1	162560139	162560139	+	Missense_Mutation	SNP	G	G	A	rs146235126		TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr1:162560139G>A	ENST00000271469.3	+	8	1498	c.1196G>A	c.(1195-1197)cGa>cAa	p.R399Q	UAP1_ENST00000367924.1_Missense_Mutation_p.R399Q|UAP1_ENST00000367925.1_Missense_Mutation_p.R399Q|UAP1_ENST00000367926.4_Missense_Mutation_p.R399Q			Q16222	UAP1_HUMAN	UDP-N-acteylglucosamine pyrophosphorylase 1	399					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			breast(2)|cervix(3)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(8)|ovary(2)|skin(2)|stomach(1)	22	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			GAAGTATTGCGAGAAGATGAG	0.398000													8	128					0	0	1	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145806482	145806482	+	Missense_Mutation	SNP	G	G	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr8:145806482G>A	ENST00000276826.5	-	2	461	c.260C>T	c.(259-261)aCg>aTg	p.T87M	ARHGAP39_ENST00000377307.2_Missense_Mutation_p.T87M|ARHGAP39_ENST00000540274.1_Missense_Mutation_p.T87M			Q9C0H5	RHG39_HUMAN	Rho GTPase activating protein 39	87	WW 2.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity			NS(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|lung(11)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	22						CGTGCGCTGCGTGCTGGCATT	0.682000													3	8					0	0	1	0	0
TUBB8P7	197331	broad.mit.edu	37	16	90161926	90161926	+	RNA	SNP	T	T	C	rs8061283	by1000genomes	TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr16:90161926T>C	ENST00000564451.1	+	0	1279				TUBB8P7_ENST00000567960.1_RNA														p.I221T(3)									CCCACACCCATCTATGGTGAC	0.527000													5	34					0	0	1	0	0
SLITRK5	26050	broad.mit.edu	37	13	88327979	88327979	+	Silent	SNP	A	A	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr13:88327979A>T	ENST00000325089.6	+	2	555	c.336A>T	c.(334-336)ctA>ctT	p.L112L	SLITRK5_ENST00000400028.3_Intron	NM_015567.1	NP_056382.1	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5	112						integral to membrane				breast(1)|central_nervous_system(2)|endometrium(6)|kidney(6)|large_intestine(14)|lung(40)|ovary(2)|pancreas(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(4)	81	all_neural(89;0.101)|Medulloblastoma(90;0.163)					TTTTGCATCTAGGTAGCAATG	0.458000													73	129					0	0	1	0	0
COPB1	1315	broad.mit.edu	37	11	14515905	14515905	+	Missense_Mutation	SNP	G	G	C			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr11:14515905G>C	ENST00000249923.3	-	3	472	c.172C>G	c.(172-174)Ctt>Gtt	p.L58V	PSMA1_ENST00000419365.2_3'UTR|COPB1_ENST00000439561.2_Missense_Mutation_p.L58V|PSMA1_ENST00000555531.1_3'UTR	NM_016451.4	NP_057535.1	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	58					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(12)|ovary(1)|prostate(1)|skin(1)|stomach(1)|urinary_tract(2)	36						GTCATCAGAAGTCCAGGAAGT	0.333000													35	71					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103710695	103710695	+	Missense_Mutation	SNP	C	C	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr13:103710695C>T	ENST00000245312.3	-	2	1011	c.415G>A	c.(415-417)Gga>Aga	p.G139R		NM_000452.2	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid cotransporter), member 2	139					bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			breast(1)|endometrium(2)|large_intestine(6)|lung(16)|ovary(3)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	34	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GGCATCATTCCGAGGGCAAGC	0.473000													15	32					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131191446	131191446	+	Missense_Mutation	SNP	A	A	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr7:131191446A>T	ENST00000541194.1	-	6	1404	c.1147T>A	c.(1147-1149)Tgc>Agc	p.C383S	PODXL_ENST00000537928.1_Missense_Mutation_p.C349S|PODXL_ENST00000378555.3_Missense_Mutation_p.C381S|PODXL_ENST00000322985.9_Missense_Mutation_p.C349S	NM_001018111.2	NP_001018121.1	O00592	PODXL_HUMAN	podocalyxin-like	381					cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				NS(1)|breast(3)|endometrium(3)|kidney(3)|large_intestine(4)|lung(4)|pancreas(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	24	Melanoma(18;0.162)					ACTGCTCGGCATATCAGTGAG	0.587000											OREG0018320	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	94					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000446179.1_Missense_Mutation_p.R132H|IDH1_ENST00000345146.2_Missense_Mutation_p.R132H	NM_001282387.1	NP_001269316.1	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								35	60					0	0	1	0	0
AMBP	259	broad.mit.edu	37	9	116823806	116823806	+	Missense_Mutation	SNP	C	C	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr9:116823806C>T	ENST00000265132.3	-	8	1013	c.751G>A	c.(751-753)Ggt>Agt	p.G251S		NM_001633.3	NP_001624.1	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin precursor	251	BPTI/Kunitz inhibitor 1.				cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(4)|skin(1)	11					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	ATGGATGTACCATTATAGAAA	0.557000													4	81					0	0	1	0	0
GGT3P	2679	broad.mit.edu	37	22	18778612	18778612	+	RNA	SNP	C	C	T	rs1055042	by1000genomes	TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr22:18778612C>T	ENST00000412448.1	-	0	793																											GCGGCCACGGCAGCCCTGGTG	0.637000													3	23					0	0	1	0	0
TUBB8P7	197331	broad.mit.edu	37	16	90161902	90161902	+	RNA	SNP	A	A	G	rs6500471	by1000genomes	TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr16:90161902A>G	ENST00000564451.1	+	0	1255				TUBB8P7_ENST00000567960.1_RNA														p.K213R(8)									ATATGTTCCAAGACCCTAAAA	0.537000													5	41					0	0	1	0	0
RIBC2	26150	broad.mit.edu	37	22	45826809	45826809	+	Missense_Mutation	SNP	C	C	G			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr22:45826809C>G	ENST00000342894.3	+	6	1128	c.714C>G	c.(712-714)gaC>gaG	p.D238E	RIBC2_ENST00000466226.1_3'UTR|RIBC2_ENST00000538017.1_Missense_Mutation_p.D306E			Q9H4K1	RIBC2_HUMAN	RIB43A domain with coiled-coils 2	238										NS(1)|endometrium(1)|kidney(2)|large_intestine(3)|skin(2)|urinary_tract(1)	10		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		GCCAGCGAGACCTGGACTGGG	0.642000													5	14					0	0	1	0	0
LOC644669	644669	broad.mit.edu	37	18	15323336	15323336	+	RNA	SNP	G	G	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr18:15323336G>A	ENST00000455308.2	-	0	512					NR_027417.1																						TTTCCTTATGGCCAATAAAAG	0.289000													3	20					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78953152	78953152	+	Silent	SNP	C	C	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr9:78953152C>T	ENST00000545128.1	+	34	5212	c.4674C>T	c.(4672-4674)taC>taT	p.Y1558Y		NM_001190482.1	NP_001177411.1	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	729					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			NS(1)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(7)|liver(2)|lung(25)|ovary(2)|pancreas(1)|prostate(2)|skin(3)	55						TCAGATATTACGCAGACAACT	0.488000													11	15					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75871579	75871579	+	Missense_Mutation	SNP	G	G	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr5:75871579G>A	ENST00000274364.6	+	5	740	c.443G>A	c.(442-444)tGc>tAc	p.C148Y	IQGAP2_ENST00000379730.3_5'UTR	NM_006633.2	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	148	CH.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(15)|lung(23)|ovary(6)|prostate(1)|skin(3)|stomach(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	68		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		ATGATATATTGCATTCACGCA	0.294000													4	49					0	0	1	0	0
ZNF324	25799	broad.mit.edu	37	19	58982998	58982998	+	Missense_Mutation	SNP	G	G	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr19:58982998G>A	ENST00000536459.2	+	4	1848	c.1139G>A	c.(1138-1140)cGc>cAc	p.R380H	ZNF324_ENST00000196482.3_Missense_Mutation_p.R380H|ZNF324_ENST00000535298.1_Missense_Mutation_p.R157H			O75467	Z324A_HUMAN	zinc finger protein 324	380					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|liver(1)|lung(2)|prostate(2)|urinary_tract(2)	16		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CGCTTCTGCCGCAACTCGCAC	0.657000													3	25					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1095756	1095756	+	Silent	SNP	G	G	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr11:1095756G>T	ENST00000441003.2	+	33	6294	c.6267G>T	c.(6265-6267)ccG>ccT	p.P2089P	MUC2_ENST00000333592.6_3'UTR|MUC2_ENST00000361558.6_Silent_p.P227P	NM_002457.2	NP_002448.2	Q02817	MUC2_HUMAN	mucin 2, oligomeric mucus/gel-forming	4451						inner mucus layer|outer mucus layer	protein binding			NS(3)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(26)|haematopoietic_and_lymphoid_tissue(4)|kidney(11)|large_intestine(5)|lung(22)|ovary(2)|prostate(16)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)	102		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GTGAGCCGCCGCCCATGCCCA	0.657000													3	20					1	1	1	1	0
APAF1	317	broad.mit.edu	37	12	99059486	99059486	+	Missense_Mutation	SNP	A	A	T			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr12:99059486A>T	ENST00000357310.1	+	8	1688	c.1111A>T	c.(1111-1113)Agt>Tgt	p.S371C	APAF1_ENST00000551964.1_Missense_Mutation_p.S371C|APAF1_ENST00000552268.1_Intron|APAF1_ENST00000547045.1_Missense_Mutation_p.S371C|APAF1_ENST00000550527.1_Missense_Mutation_p.S360C|APAF1_ENST00000359972.2_Missense_Mutation_p.S360C|APAF1_ENST00000339433.3_Missense_Mutation_p.S371C|APAF1_ENST00000333991.1_Intron|APAF1_ENST00000549007.1_Missense_Mutation_p.S371C	NM_181868.1	NP_863658.1	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1	371	NB-ARC.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			breast(1)|central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(13)|liver(1)|lung(15)|ovary(2)|prostate(2)|skin(1)	42					Adenosine triphosphate(DB00171)	CATGTCTATAAGTGTTGAAAT	0.383000													13	39					0	0	1	0	0
PBX1	5087	broad.mit.edu	37	1	164532483	164532483	+	Missense_Mutation	SNP	C	C	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr1:164532483C>A	ENST00000420696.2	+	2	388	c.200C>A	c.(199-201)gCt>gAt	p.A67D	PBX1_ENST00000559240.1_Missense_Mutation_p.A67D|PBX1_ENST00000401534.1_Missense_Mutation_p.A67D|PBX1_ENST00000367897.1_Missense_Mutation_p.A67D|PBX1_ENST00000540236.1_Missense_Mutation_p.A67D	NM_001204961.1|NM_001204963.1|NM_002585.3	NP_001191890.1|NP_001191892.1|NP_002576.1	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	67					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	large_intestine(1)|lung(1)|skin(1)|upper_aerodigestive_tract(1)	4						AGAAAACATGCTTTAAACTGC	0.363000			T	"""TCF3, EWSR1"""	"""pre B-ALL, myoepithelioma"""								4	229					1	1	1	1	0
CELSR3	1951	broad.mit.edu	37	3	48696782	48696782	+	Missense_Mutation	SNP	C	C	T	rs144228630		TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr3:48696782C>T	ENST00000544264.1	-	1	3566	c.3286G>A	c.(3286-3288)Gaa>Aaa	p.E1096K	CELSR3_ENST00000164024.4_Missense_Mutation_p.E1096K			Q9NYQ7	CELR3_HUMAN	cadherin, EGF LAG seven-pass G-type receptor 3	1096	Cadherin 8.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			NS(1)|biliary_tract(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(7)|lung(23)|ovary(9)|prostate(6)|skin(7)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	83				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TTGGGGCCTTCGTCAGGGTCC	0.532000													4	96					0	0	1	0	0
CRISPLD1	83690	broad.mit.edu	37	8	75937819	75937819	+	Missense_Mutation	SNP	A	A	G			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr8:75937819A>G	ENST00000262207.4	+	13	1751	c.1283A>G	c.(1282-1284)cAt>cGt	p.H428R	CRISPLD1_ENST00000523524.1_Missense_Mutation_p.H240R|CRISPLD1_ENST00000517786.1_Missense_Mutation_p.H242R	NM_031461.5	NP_113649.1	Q9H336	CRLD1_HUMAN	cysteine-rich secretory protein LCCL domain containing 1	428	LCCL 2.					extracellular region				biliary_tract(1)|central_nervous_system(1)|endometrium(3)|kidney(7)|large_intestine(10)|lung(16)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	43	Breast(64;0.0799)		Epithelial(68;0.155)|BRCA - Breast invasive adenocarcinoma(89;0.161)			GCAAATCCACATTATGCTCGT	0.279000													7	126					0	0	1	0	0
CLIP1	6249	broad.mit.edu	37	12	122862135	122862135	+	Missense_Mutation	SNP	G	G	A			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr12:122862135G>A	ENST00000358808.2	-	3	612	c.458C>T	c.(457-459)aCg>aTg	p.T153M	CLIP1_ENST00000361654.4_Missense_Mutation_p.T153M|CLIP1_ENST00000537178.1_Missense_Mutation_p.T153M|CLIP1_ENST00000540338.1_Missense_Mutation_p.T153M|CLIP1_ENST00000302528.7_Missense_Mutation_p.T153M	NM_001247997.1|NM_002956.2	NP_001234926.1|NP_002947.1	P30622	CLIP1_HUMAN	CAP-GLY domain containing linker protein 1	153	Ser-rich.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			NS(1)|breast(5)|endometrium(4)|kidney(5)|large_intestine(16)|liver(1)|lung(21)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CATGCTGGCCGTAGAAGTGCA	0.557000													4	152					0	0	1	0	0
KMT2C	58508	broad.mit.edu	37	7	151848004	151848004	+	Missense_Mutation	SNP	G	G	A	rs142168391		TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr7:151848004G>A	ENST00000355193.2	-	52	13144	c.12926C>T	c.(12925-12927)gCg>gTg	p.A4309V	KMT2C_ENST00000262189.6_Missense_Mutation_p.A4252V					lysine (K)-specific methyltransferase 2C																		TGAGTTTTTCGCTTGTGCAGT	0.388000													24	38					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70917932	70917932	+	Silent	SNP	G	G	A	rs141625832	by1000genomes	TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr16:70917932G>A	ENST00000393567.2	-	59	10020	c.9870C>T	c.(9868-9870)gaC>gaT	p.D3290D		NM_001270974.1	NP_001257903.1	Q4G0P3	HYDIN_HUMAN	HYDIN, axonemal central pair apparatus protein	3290										breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(17)|lung(12)|ovary(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)	43		Ovarian(137;0.0654)				TTCCCATGGCGTCAGCCACAC	0.567000													7	29					0	0	1	0	0
EFNA3	1944	broad.mit.edu	37	1	155058898	155058898	+	Missense_Mutation	SNP	A	A	G			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr1:155058898A>G	ENST00000368408.3	+	5	666	c.596A>G	c.(595-597)gAg>gGg	p.E199G	EFNA3_ENST00000556931.1_Missense_Mutation_p.E194G|EFNA3_ENST00000498667.1_3'UTR|EFNA3_ENST00000418360.2_Missense_Mutation_p.E173G|EFNA3_ENST00000505139.1_Missense_Mutation_p.E194G	NM_004952.4	NP_004943.1	P52797	EFNA3_HUMAN	ephrin-A3	199					cell-cell signaling	anchored to membrane|integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			breast(1)|central_nervous_system(1)|large_intestine(1)|lung(2)	5	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		all cancers(21;5.67e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000284)|LUSC - Lung squamous cell carcinoma(543;0.193)			GAAGACTTTGAGGGAGAGAAC	0.637000											OREG0013850	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	38					0	0	1	0	0
RP11-206L10.10	0	broad.mit.edu	37	1	745643	745643	+	RNA	DEL	C	C	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr1:745643delC	ENST00000435300.1	-	0	340																											TTCAAAGTGACAGACTGTGGG	0.299													3	3	---	---	---	---					
FUBP1	8880	broad.mit.edu	37	1	78428470	78428471	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr1:78428470_78428471delTA	ENST00000370767.1	-	14	1415_1416	c.1328_1329delTA	c.(1327-1329)atafs	p.I443fs	FUBP1_ENST00000436586.2_Frame_Shift_Del_p.I464fs|FUBP1_ENST00000370768.2_Frame_Shift_Del_p.I443fs			Q96AE4	FUBP1_HUMAN	far upstream element (FUSE) binding protein 1	443	KH 4.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(7)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(4)|lung(1)|upper_aerodigestive_tract(3)	17						TCTTTTCTTCTATGAGTTGCCG	0.337			"""F, N"""		oligodendroglioma								37	35	---	---	---	---					
GREB1	9687	broad.mit.edu	37	2	11778832	11778833	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr2:11778832_11778833delTT	ENST00000381486.2	+	32	5883_5884	c.5583_5584delTT	c.(5581-5586)tctttafs	p.L1862fs	GREB1_ENST00000396123.1_Frame_Shift_Del_p.L860fs|GREB1_ENST00000234142.5_Frame_Shift_Del_p.L1862fs	NM_014668.3	NP_055483.2	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1862						integral to membrane				breast(3)|central_nervous_system(2)|endometrium(2)|kidney(4)|large_intestine(9)|lung(9)|ovary(1)	30	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GGCCCCACTCTTTAAACATCAG	0.426													16	72	---	---	---	---					
ASXL2	55252	broad.mit.edu	37	2	25973090	25973094	+	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr2:25973090_25973094delTTCTT	ENST00000435504.4	-	12	1624_1628	c.1331_1335delAAGAA	c.(1330-1335)aaagaafs	p.KE444fs	ASXL2_ENST00000272341.4_Frame_Shift_Del_p.KE184fs|ASXL2_ENST00000404843.1_Frame_Shift_Del_p.KE184fs|ASXL2_ENST00000336112.4_Frame_Shift_Del_p.KE416fs			Q76L83	ASXL2_HUMAN	additional sex combs like 2 (Drosophila)	444					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			NS(1)|breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(4)|lung(7)|pancreas(1)|prostate(4)|skin(3)|urinary_tract(3)	33	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTCACACTCTTCTTTTCTGCCTGG	0.473													10	408	---	---	---	---					
PIK3CA	5290	broad.mit.edu	37	3	178928078	178928080	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr3:178928078_178928080delAGA	ENST00000263967.3	+	8	1513_1515	c.1356_1358delAGA	c.(1354-1359)ttagaa>tta	p.E453del		NM_006218.2	NP_006209.2	P42336	PK3CA_HUMAN	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha	453	C2 PI3K-type.		E -> Q (in cancer; shows an increase in lipid kinase activity; may disrupt the interaction of the C2 PI3K-type domain with the iSH2 region of the p85 regulatory subunit).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E453K(11)|p.E453Q(5)|p.H450fs*9(1)|p.E453A(1)|p.P449_L455del(1)|p.G451_L456>V(1)		NS(16)|autonomic_ganglia(4)|biliary_tract(22)|bone(1)|breast(2150)|central_nervous_system(110)|cervix(33)|endometrium(473)|eye(1)|haematopoietic_and_lymphoid_tissue(35)|kidney(14)|large_intestine(1202)|liver(42)|lung(202)|meninges(1)|oesophagus(28)|ovary(235)|pancreas(17)|penis(8)|pituitary(12)|prostate(10)|skin(155)|small_intestine(1)|soft_tissue(18)|stomach(121)|thyroid(80)|upper_aerodigestive_tract(70)|urinary_tract(208)	5269	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			CTCATGGATTAGAAGATTTGCTG	0.350		57	Mis		"""colorectal, gastric, gliobastoma, breast"""					HNSCC(19;0.045)|TSP Lung(28;0.18)			17	144	---	---	---	---					
FLJ33360	401172	broad.mit.edu	37	5	6337066	6337067	+	RNA	DEL	AC	AC	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr5:6337066_6337067delAC	ENST00000507444.1	-	0	143					NR_028351.1																						acacatacatacacacacacac	0.475													2	4	---	---	---	---					
OR52B1P	81274	broad.mit.edu	37	11	6173545	6173545	+	Frame_Shift_Del	DEL	C	C	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr11:6173545delC	ENST00000316506.1	-	1	273	c.274delG	c.(274-276)gccfs	p.A92fs	RP11-290F24.3_ENST00000529961.1_RNA																							ATCGCCAAGGCCTTAGGCACA	0.512													2	4	---	---	---	---					
RP11-35J10.5	0	broad.mit.edu	37	11	7794594	7794594	+	RNA	DEL	T	T	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr11:7794594delT	ENST00000527565.1	-	0	542																											GGGCATCACATAAATGAAGGT	0.502													2	4	---	---	---	---					
SLC26A10	65012	broad.mit.edu	37	12	58018904	58018906	+	Splice_Site	DEL	AGG	AGG	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr12:58018904_58018906delAGG	ENST00000320442.4	+	11	1655_1656	c.1344_1345delAGG	c.(1342-1347)aaagga>aaga	p.G449del	SLC26A10_ENST00000379218.2_3'UTR|SLC26A10_ENST00000490243.1_3'UTR	NM_133489.2	NP_597996.2	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	449	STAS.					integral to membrane	antiporter activity			NS(1)|autonomic_ganglia(1)|central_nervous_system(1)|endometrium(5)|large_intestine(4)|lung(7)	19	Melanoma(17;0.122)					CTTTACTTATAGGAGACTTCAAA	0.532													68	199	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	-	G	rs2981599		TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr16:3119304_3119305insG	ENST00000525643.2	+	7	847_848	c.515_516insG	c.(514-519)gacaagfs	p.DK172fs	IL32_ENST00000549213.1_Frame_Shift_Ins_p.DK115fs|IL32_ENST00000526464.2_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000552664.1_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000529550.1_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000533097.2_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000531965.1_Frame_Shift_Ins_p.DK162fs|IL32_ENST00000382213.3_Frame_Shift_Ins_p.DK163fs|IL32_ENST00000396887.3_Frame_Shift_Ins_p.DK115fs|IL32_ENST00000548652.1_Frame_Shift_Ins_p.DK163fs|IL32_ENST00000530538.2_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000548476.1_Frame_Shift_Ins_p.DK218fs|IL32_ENST00000534507.1_Frame_Shift_Ins_p.DK218fs|IL32_ENST00000551513.1_Frame_Shift_Ins_p.DK209fs|IL32_ENST00000551122.1_Frame_Shift_Ins_p.DK115fs|IL32_ENST00000552936.1_Frame_Shift_Ins_p.DK196fs|IL32_ENST00000530890.1_Frame_Shift_Ins_p.DK152fs|IL32_ENST00000444393.3_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000529699.1_Frame_Shift_Ins_p.DK152fs|IL32_ENST00000528163.2_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000548246.1_Frame_Shift_Ins_p.DK132fs|IL32_ENST00000440815.3_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000396890.2_Frame_Shift_Ins_p.DK218fs|IL32_ENST00000008180.9_Frame_Shift_Ins_p.DK152fs|IL32_ENST00000325568.5_Frame_Shift_Ins_p.DK172fs|IL32_ENST00000552356.1_Frame_Shift_Ins_p.DK152fs			P24001	IL32_HUMAN	interleukin 32	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			breast(1)|endometrium(1)|large_intestine(3)|lung(6)|ovary(1)|pancreas(1)|skin(1)|urinary_tract(1)	15						CCACGGGGGGACAAGGAGGAGC	0.574													18	218	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42797980	42797981	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr19:42797980_42797981delTG	ENST00000572681.2	+	17	6821_6822	c.6753_6754delTG	c.(6751-6756)tctgtgfs	p.V2252fs	CIC_ENST00000575354.2_Frame_Shift_Del_p.V1345fs|CIC_ENST00000160740.3_Frame_Shift_Del_p.V1343fs			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	1345					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				CCTTTGACTCTGTGGACAAGTG	0.693			"""Mis, F, S"""		oligodendroglioma								18	68	---	---	---	---					
PNMAL2	57469	broad.mit.edu	37	19	46997016	46997017	+	In_Frame_Ins	INS	-	-	CGGCCT	rs147338403	by1000genomes	TCGA-S9-A7J1-01A-21D-A34J-08	TCGA-S9-A7J1-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	62d732f2-263a-4721-966c-18984791f8f2	789b7dd2-8169-4519-839d-8f7b66213675	g.chr19:46997016_46997017insCGGCCT	ENST00000599531.1	-	1	2738_2739	c.1706_1707insAGGCCG	c.(1705-1707)cgg>cgAGGCCGg	p.569_569R>RGR	PNMAL2_ENST00000594749.1_Intron|PNMAL2_ENST00000377655.2_Intron	NM_020709.1	NP_065760.1	Q9ULN7	PNML2_HUMAN	paraneoplastic Ma antigen family-like 2	571										central_nervous_system(1)|endometrium(2)|large_intestine(1)|lung(4)	8		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		GAGTGACGCCCCGGCCTCGGCC	0.777													7	3	---	---	---	---					
