Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DIP2C	22982	broad.mit.edu	37	10	436251	436251	+	Missense_Mutation	SNP	A	A	T			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr10:436251A>T	ENST00000280886.6	-	12	1534	c.1447T>A	c.(1447-1449)Tgg>Agg	p.W483R	DIP2C_ENST00000381496.3_Missense_Mutation_p.W376R	NM_014974.2	NP_055789.1	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C (Drosophila)	483						nucleus	catalytic activity|transcription factor binding			breast(8)|endometrium(6)|kidney(10)|large_intestine(13)|lung(26)|ovary(3)|prostate(6)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(4)	81		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TGTGGGAACCAGTCTCGGGGC	0.483000													3	82					0	0	1	0	0
MAP3K4	4216	broad.mit.edu	37	6	161530825	161530825	+	Silent	SNP	G	G	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr6:161530825G>A	ENST00000392142.4	+	23	4423	c.4275G>A	c.(4273-4275)ggG>ggA	p.G1425G	MAP3K4_ENST00000366919.2_Silent_p.G1375G|MAP3K4_ENST00000366920.2_Silent_p.G1421G|MAP3K4_ENST00000348824.7_Silent_p.G1371G	NM_005922.2	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1425	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			breast(6)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(20)|lung(28)|ovary(3)|skin(2)|stomach(1)	77		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GCGATGAGGGGACTTTAGAAG	0.463000													22	47					0	0	1	0	0
FAM66D	100132923	broad.mit.edu	37	8	11986719	11986719	+	RNA	SNP	G	G	C			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr8:11986719G>C	ENST00000434078.2	+	0	608					NR_027425.1																						TGGATTTCAGGAAAAGCTGCA	0.522000													3	36					0	0	1	0	0
PRSS53	339105	broad.mit.edu	37	16	31098181	31098181	+	Missense_Mutation	SNP	A	A	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr16:31098181A>G	ENST00000280606.6	-	4	434	c.281T>C	c.(280-282)cTg>cCg	p.L94P		NM_001039503.2	NP_001034592.1	Q2L4Q9	PRS53_HUMAN	protease, serine, 53	94	Peptidase S1 1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)|lung(3)	4						CAGAGAACCCAGGACCACTGA	0.612000													3	44					0	0	1	0	0
DCAF15	90379	broad.mit.edu	37	19	14066828	14066828	+	Missense_Mutation	SNP	C	C	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:14066828C>G	ENST00000254337.6	+	4	492	c.471C>G	c.(469-471)ttC>ttG	p.F157L		NM_138353.2	NP_612362.2	Q66K64	DCA15_HUMAN	DDB1 and CUL4 associated factor 15	157										breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(5)|ovary(1)|pancreas(1)	11						TCTTCGGCTTCAAGTGAGACC	0.662000													3	55					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79029294	79029294	+	Nonsense_Mutation	SNP	C	C	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr5:79029294C>A	ENST00000446378.2	+	2	4737	c.4706C>A	c.(4705-4707)tCa>tAa	p.S1569*		NM_153610.3	NP_705838.3	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1569						perinuclear region of cytoplasm				NS(2)|breast(4)|central_nervous_system(1)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|kidney(4)|large_intestine(37)|lung(34)|ovary(6)|pancreas(2)|prostate(5)|skin(5)|stomach(11)|upper_aerodigestive_tract(3)|urinary_tract(1)	128		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACAGCAAGTTCATCTCCTGAG	0.408000													5	130					1	1	1	1	0
ZNF554	115196	broad.mit.edu	37	19	2834829	2834829	+	Missense_Mutation	SNP	C	C	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:2834829C>G	ENST00000317243.5	+	5	1794	c.1596C>G	c.(1594-1596)aaC>aaG	p.N532K		NM_001102651.1	NP_001096121.1	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	532					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(3)|liver(3)|lung(10)|ovary(1)|upper_aerodigestive_tract(1)	23		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTACCAGAACAGACATCTTA	0.423000													27	62					0	0	1	0	0
NAE1	8883	broad.mit.edu	37	16	66842495	66842495	+	Missense_Mutation	SNP	T	T	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr16:66842495T>A	ENST00000379463.2	-	18	1433	c.1241A>T	c.(1240-1242)gAt>gTt	p.D414V	NAE1_ENST00000359087.4_Missense_Mutation_p.D423V|NAE1_ENST00000394074.2_Missense_Mutation_p.D331V|NAE1_ENST00000290810.3_Missense_Mutation_p.D420V	NM_001018159.1	NP_001018169.1	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1	420					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(8)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	18		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	TATTTCATTATCTGGATTGTC	0.308000													21	134					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170819	113170819	+	Missense_Mutation	SNP	A	A	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr9:113170819A>G	ENST00000401783.2	-	38	7397	c.7061T>C	c.(7060-7062)gTc>gCc	p.V2354A	SVEP1_ENST00000297826.5_Missense_Mutation_p.V280A|SVEP1_ENST00000374469.1_Missense_Mutation_p.V2331A	NM_153366.3	NP_699197.3	Q4LDE5	SVEP1_HUMAN	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	2354	Sushi 16.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|breast(5)|central_nervous_system(1)|cervix(2)|endometrium(19)|kidney(8)|large_intestine(24)|lung(58)|ovary(7)|prostate(7)|skin(1)|stomach(4)|upper_aerodigestive_tract(5)|urinary_tract(4)	147						GCCTTGCAGGACATGCCCTTC	0.498000													9	23					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35738505	35738505	+	Missense_Mutation	SNP	G	G	T			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr13:35738505G>T	ENST00000540320.1	+	24	4626	c.4092G>T	c.(4090-4092)aaG>aaT	p.K1364N	NBEA_ENST00000310336.4_Missense_Mutation_p.K1364N|NBEA_ENST00000400445.3_Missense_Mutation_p.K1364N|NBEA_ENST00000379939.2_Missense_Mutation_p.K1364N			Q8NFP9	NBEA_HUMAN	neurobeachin	1364						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			NS(1)|breast(1)|endometrium(14)|kidney(4)|large_intestine(29)|lung(40)|ovary(9)|prostate(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	108		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATTCTACAAAGTCTGTAATGG	0.289000													3	11					0.004672	0.00491159	1	1	0
LOC101927755	101927755	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	rs144367363	by1000genomes	TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr17:58066651C>T	ENST00000586209.1	+	0	158																											ACTGGTAAAGCTGTTTAAGAG	0.333000													3	16					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274343	39274343	+	Silent	SNP	A	A	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr17:39274343A>G	ENST00000391413.2	-	1	263	c.225T>C	c.(223-225)tgT>tgC	p.C75C		NM_033059.3	NP_149048.2	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	75	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament				endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCTGGGGCGACAGCAGCTGG	0.657000													3	49					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000345146.2_Missense_Mutation_p.R132H|IDH1_ENST00000446179.1_Missense_Mutation_p.R132H	NM_001282387.1	NP_001269316.1	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								26	71					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73065175	73065175	+	RNA	SNP	G	G	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chrX:73065175G>A	ENST00000429829.1	-	0	7413					NR_001564.2																						CTGCTGTACTGCAAAAAGGGT	0.473000													6	93					0	0	1	0	0
SAP130	79595	broad.mit.edu	37	2	128744415	128744415	+	Silent	SNP	G	G	C			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr2:128744415G>C	ENST00000357702.5	-	14	2111	c.1980C>G	c.(1978-1980)ccC>ccG	p.P660P	SAP130_ENST00000259235.3_Silent_p.P660P|SAP130_ENST00000259234.6_Silent_p.P633P	NM_001145928.1	NP_001139400.1	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa	660					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			NS(4)|breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(11)|lung(10)|ovary(2)|prostate(1)|skin(5)|urinary_tract(2)	45	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		AGCCCTGGGCGGGAGCGTTGG	0.572000													28	66					0	0	1	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr2:207025366G>A	ENST00000392222.2	+	2	510	c.135G>A	c.(133-135)ccG>ccA	p.P45P	EEF1B2_ENST00000392221.1_Silent_p.P45P|EEF1B2_ENST00000236957.5_Silent_p.P45P	NM_001959.3	NP_001950.1	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta 2	45	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity	p.P45P(5)		breast(1)|endometrium(5)|kidney(3)|large_intestine(1)|lung(6)	16						CCAGCCCACCGCCTGCCGACT	0.448000													4	102					0	0	1	0	0
EI24	9538	broad.mit.edu	37	11	125453434	125453434	+	Missense_Mutation	SNP	C	C	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr11:125453434C>G	ENST00000343678.4	+	11	1006	c.764C>G	c.(763-765)tCt>tGt	p.S255C	STT3A-AS1_ENST00000532714.1_RNA|EI24_ENST00000278903.6_Silent_p.L292L|STT3A-AS1_ENST00000530526.1_RNA|EI24_ENST00000530985.1_3'UTR	NM_001007277.1	NP_001007278.1	O14681	EI24_HUMAN	etoposide induced 2.4	0					apoptosis|autophagy|induction of apoptosis|negative regulation of cell growth	endoplasmic reticulum membrane|integral to membrane|nuclear membrane				large_intestine(1)|lung(9)|ovary(1)	11	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.64e-07)|OV - Ovarian serous cystadenocarcinoma(99;0.0975)		AGTTGCGCCTCTTCTCCTTGG	0.448000													6	13					0	0	1	0	0
HLA-A	3105	broad.mit.edu	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G	rs41559716	by1000genomes	TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr6:29910693A>G	ENST00000396634.1	+	4	574	c.233A>G	c.(232-234)cAg>cGg	p.Q78R	HLA-A_ENST00000376809.5_Missense_Mutation_p.Q78R|HLA-A_ENST00000376802.2_Missense_Mutation_p.Q78R|HLA-A_ENST00000376806.5_Missense_Mutation_p.Q78R			P30443	1A01_HUMAN	major histocompatibility complex, class I, A	78	Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity	p.Q78R(2)		central_nervous_system(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(10)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(5)|urinary_tract(2)	30						TGGATAGAGCAGGAGGGGCCG	0.657000									Osteosarcoma, Familial Clustering of;Naso-/Oropharyngeal/Laryngeal Cancer, Familial Clustering of;Melanoma, Familial Clustering of;Lichen Sclerosis et Atrophicus, Familial Clustering of	Multiple Myeloma(9;0.094)			3	13					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42791757	42791757	+	Missense_Mutation	SNP	C	C	T			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:42791757C>T	ENST00000572681.2	+	6	3438	c.3370C>T	c.(3370-3372)Cgg>Tgg	p.R1124W	CIC_ENST00000160740.3_Missense_Mutation_p.R215W|CIC_ENST00000575354.2_Missense_Mutation_p.R215W			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	215	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding	p.R215W(4)		autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				CAAGCGGCACCGGGCCCTGGT	0.612000			"""Mis, F, S"""		oligodendroglioma								6	41					0	0	1	0	0
PCDHB18P	54660	broad.mit.edu	37	5	140615655	140615655	+	RNA	SNP	A	A	G			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr5:140615655A>G	ENST00000526308.1	+	0	1718					NR_001281.1															endometrium(9)|lung(7)|ovary(1)|urinary_tract(1)	18						AACGCGGACAACGGCCACCTA	0.677000													42	155					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42791718	42791718	+	Missense_Mutation	SNP	C	C	T			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:42791718C>T	ENST00000572681.2	+	6	3399	c.3331C>T	c.(3331-3333)Cgg>Tgg	p.R1111W	CIC_ENST00000160740.3_Missense_Mutation_p.R202W|CIC_ENST00000575354.2_Missense_Mutation_p.R202W			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	202	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding	p.R202W(1)		autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				CCACATCCGGCGGCCCATGAA	0.622000			"""Mis, F, S"""		oligodendroglioma								6	29					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42791752	42791752	+	Missense_Mutation	SNP	G	G	C			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:42791752G>C	ENST00000572681.2	+	6	3433	c.3365G>C	c.(3364-3366)cGg>cCg	p.R1122P	CIC_ENST00000160740.3_Missense_Mutation_p.R213P|CIC_ENST00000575354.2_Missense_Mutation_p.R213P			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	213	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding	p.R213P(1)		autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				TTCAGCAAGCGGCACCGGGCC	0.617000			"""Mis, F, S"""		oligodendroglioma								8	37					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064360	9064360	+	Missense_Mutation	SNP	C	C	T			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:9064360C>T	ENST00000397910.4	-	3	23289	c.23086G>A	c.(23086-23088)Gtg>Atg	p.V7696M		NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	7698	Ser-rich.|Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.V7696M(2)|p.V3329M(1)		NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						GGTGAGGTCACGGCAGGTAAA	0.582000													5	73					0	0	1	0	0
LRRC37A4P	55073	broad.mit.edu	37	17	43587576	43587576	+	RNA	SNP	A	A	G	rs145439557	by1000genomes	TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr17:43587576A>G	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							tctgaaaagaaaagaaaaaaa	0.428000													4	34					0	0	1	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529	by1000genomes	TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr17:39254054A>T	ENST00000333822.4	-	1	339	c.283T>A	c.(283-285)Tgc>Agc	p.C95S		NM_031960.2	NP_114166.1	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4-8	95	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].					keratin filament		p.C95S(4)		endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(1)|prostate(1)	11						ctggagatgcagcagcTAGGG	0.677000													3	41					0	0	1	0	0
OR5M1	390168	broad.mit.edu	37	11	56380102	56380102	+	Missense_Mutation	SNP	G	G	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr11:56380102G>A	ENST00000526538.1	-	1	876	c.877C>T	c.(877-879)Cgg>Tgg	p.R293W		NM_001004740.1	NP_001004740.1	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M, member 1	293					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|lung(7)|upper_aerodigestive_tract(1)	12						TCTGTGTTCCGTAGGCTATAG	0.403000													10	170					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134072585	134072585	+	Silent	SNP	C	C	A	rs140875995		TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr4:134072585C>A	ENST00000264360.5	+	1	2116	c.1290C>A	c.(1288-1290)acC>acA	p.T430T		NM_032961.1	NP_116586.1	Q9P2E7	PCD10_HUMAN	protocadherin 10		Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(2)|breast(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(30)|liver(1)|lung(72)|ovary(2)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(6)|urinary_tract(2)	136				LUSC - Lung squamous cell carcinoma(193;0.227)		ACTCCTACACCCTGACTGTAG	0.587000													12	139					9.05144e-12	9.76603e-12	1	1	0
TRPM6	140803	broad.mit.edu	37	9	77442828	77442828	+	Missense_Mutation	SNP	C	C	T			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr9:77442828C>T	ENST00000451710.3	-	7	944	c.707G>A	c.(706-708)aGc>aAc	p.S236N	TRPM6_ENST00000376871.3_Missense_Mutation_p.S236N|TRPM6_ENST00000376864.4_Missense_Mutation_p.S236N|TRPM6_ENST00000360774.1_Missense_Mutation_p.S236N|TRPM6_ENST00000376872.3_Missense_Mutation_p.S236N|TRPM6_ENST00000483186.1_5'UTR|TRPM6_ENST00000359047.2_Missense_Mutation_p.S236N|TRPM6_ENST00000361255.3_Missense_Mutation_p.S231N|TRPM6_ENST00000449912.2_Missense_Mutation_p.S231N			Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel, subfamily M, member 6	236					response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			NS(2)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(22)|liver(1)|lung(53)|ovary(1)|prostate(7)|skin(12)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	126						TGTGAGCTTGCTGAGGGGGTT	0.537000													20	44					0	0	1	0	0
LRRC37A4P	55073	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs149697015	by1000genomes	TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr17:43587569G>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							aactccgtctgaaaagaaaag	0.443000													4	32					0	0	1	0	0
LOC643923	643923	broad.mit.edu	37	11	107463175	107463175	+	Missense_Mutation	SNP	C	C	A			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr11:107463175C>A	ENST00000600612.1	+	2	386	c.373C>A	c.(373-375)Ccg>Acg	p.P125T	ELMOD1_ENST00000443271.2_Intron|ELMOD1_ENST00000531234.1_Intron|ELMOD1_ENST00000265840.7_Intron|ELMOD1_ENST00000529675.1_3'UTR																							ACGTTTTGTGCCGGTGGCTTG	0.423000													3	48					0.00909568	0.00932307	1	1	0
CD2BP2	10421	broad.mit.edu	37	16	30365550	30365552	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr16:30365550_30365552delCAT	ENST00000305596.3	-	3	345_347	c.170_172delATG	c.(169-174)gatggg>ggg	p.D57del	CD2BP2_ENST00000569466.1_In_Frame_Del_p.D57del	NM_006110.2	NP_006101.1	O95400	CD2B2_HUMAN	CD2 (cytoplasmic tail) binding protein 2	57					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			breast(1)|large_intestine(4)|lung(8)|ovary(1)|skin(1)	15						CTGGACCCCCCATCATCATCATC	0.532													7	401	---	---	---	---					
CLUH	23277	broad.mit.edu	37	17	2601322	2601322	+	Frame_Shift_Del	DEL	G	G	-			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr17:2601322delG	ENST00000570628.2	-	10	1820	c.1715delC	c.(1714-1716)ccgfs	p.P572fs	CLUH_ENST00000435359.1_Frame_Shift_Del_p.P572fs|CLUH_ENST00000538975.1_Frame_Shift_Del_p.P572fs					clustered mitochondria (cluA/CLU1) homolog									p.P572L(1)									GTTGAGGTCCGGGGGGAAGGT	0.692													3	5	---	---	---	---					
SUGP1	57794	broad.mit.edu	37	19	19416875	19416875	+	Frame_Shift_Del	DEL	G	G	-			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr19:19416875delG	ENST00000247001.5	-	4	668	c.321delC	c.(319-321)accfs	p.T107fs	SUGP1_ENST00000585763.1_5'UTR|SUGP1_ENST00000334782.5_Frame_Shift_Del_p.T107fs	NM_172231.3	NP_757386.2	Q8IWZ8	SUGP1_HUMAN	SURP and G patch domain containing 1	107					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding			NS(1)|breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(7)|ovary(1)|prostate(1)|stomach(2)|urinary_tract(2)	22						TGGGCGCACTGGTCGGGGCGT	0.697													2	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11085429	11085431	+	RNA	DEL	ACC	ACC	-			TCGA-VM-A8CE-01A-11D-A36O-08	TCGA-VM-A8CE-10A-01D-A367-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43493bad-ec4b-422b-a8e0-ee8c5de1dbcb	8b0c047a-6768-4336-bb15-57d2fa140a0c	g.chr21:11085429_11085431delACC	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		caccaccactaccaccaccacca	0.507													2	4	---	---	---	---					
