Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLEC19A	728276	broad.mit.edu	37	16	19310081	19310081	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:19310081A>G	ENST00000465414.1	+	2	248	c.175A>G	c.(175-177)Aag>Gag	p.K59E	CLEC19A_ENST00000493231.1_Missense_Mutation_p.K59E					C-type lectin domain family 19, member A																		CCCTCTCAATAAGACCTGGGC	0.597000													3	20					0	0	0.150653	0	0
FMNL1	752	broad.mit.edu	37	17	43319757	43319757	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr17:43319757G>C	ENST00000331495.3	+	16	2271	c.1935G>C	c.(1933-1935)ttG>ttC	p.L645F	FMNL1_ENST00000328118.3_Missense_Mutation_p.L645F|FMNL1_ENST00000587489.1_Missense_Mutation_p.L223F	NM_005892.3	NP_005883.2	O95466	FMNL_HUMAN	formin-like 1	645	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			biliary_tract(1)|breast(1)|central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(8)|lung(12)|pancreas(1)|skin(1)|urinary_tract(2)	33						TGCCACTCTTGAACTGGGTGG	0.592000													4	77					0	0	0.184627	0	0
FRMPD3	84443	broad.mit.edu	37	X	106845791	106845791	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:106845791G>A	ENST00000276185.4	+	16	4621	c.4621G>A	c.(4621-4623)Gat>Aat	p.D1541N				Q5JV73	FRPD3_HUMAN	FERM and PDZ domain containing 3	1541						cytoskeleton				breast(3)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(16)|ovary(2)|urinary_tract(1)	28						CATGGCAGATGATGCCAGTGA	0.572000													4	135					0	0	0.184627	0	0
ARAP2	116984	broad.mit.edu	37	4	36230456	36230456	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:36230456G>C	ENST00000303965.4	-	2	1142	c.653C>G	c.(652-654)tCt>tGt	p.S218C		NM_015230.3	NP_056045.2	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	218					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(22)|liver(1)|lung(32)|ovary(2)|pancreas(1)|prostate(3)|skin(7)|urinary_tract(1)	82						GCCAACAAAAGAAAGGCATTC	0.373000													4	230					0	0	0.184627	0	0
ENPP6	133121	broad.mit.edu	37	4	185045420	185045420	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:185045420C>G	ENST00000296741.2	-	3	568	c.427G>C	c.(427-429)Gag>Cag	p.E143Q		NM_153343.3	NP_699174.1	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase 6	143					lipid catabolic process	extracellular region|integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(5)|skin(2)	15		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		ATCTCAACCTCACAGCCTGAG	0.413000													4	84					0	0	0.150653	0	0
SNTG1	54212	broad.mit.edu	37	8	51362274	51362274	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:51362274A>G	ENST00000522124.1	+	6	927	c.266A>G	c.(265-267)aAg>aGg	p.K89R	SNTG1_ENST00000517473.1_Missense_Mutation_p.K89R|SNTG1_ENST00000276467.5_Missense_Mutation_p.K89R|SNTG1_ENST00000518864.1_Missense_Mutation_p.K89R	NM_018967.2	NP_061840.1	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	89	PDZ.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			NS(1)|breast(1)|endometrium(6)|kidney(3)|large_intestine(6)|lung(36)|ovary(6)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	66		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				AAAATCTCCAAGGAACAAAGA	0.313000													4	12					0	0	0.150653	0	0
CYP51A1	1595	broad.mit.edu	37	7	91752552	91752552	+	Nonsense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:91752552G>C	ENST00000003100.8	-	7	1133	c.968C>G	c.(967-969)tCa>tGa	p.S323*	LRRD1_ENST00000422722.1_5'UTR|CYP51A1_ENST00000450723.1_Nonsense_Mutation_p.S218*	NM_000786.3	NP_000777.1	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A, polypeptide 1	317					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(4)|skin(1)	10	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	ACTAGTAGTTGAGGATGTATG	0.428000													6	247					0	0	0.248553	0	0
NCOR2	9612	broad.mit.edu	37	12	124911246	124911246	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:124911246G>A	ENST00000356219.3	-	12	1405	c.1250C>T	c.(1249-1251)gCc>gTc	p.A417V	NCOR2_ENST00000397355.1_Missense_Mutation_p.A417V|NCOR2_ENST00000429285.2_Missense_Mutation_p.A416V|NCOR2_ENST00000405201.1_Missense_Mutation_p.A417V|NCOR2_ENST00000404621.1_Missense_Mutation_p.A416V|NCOR2_ENST00000404121.2_5'UTR	NM_006312.5	NP_006303.4	Q9Y618	NCOR2_HUMAN	nuclear receptor corepressor 2	417					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			breast(5)|central_nervous_system(2)|endometrium(7)|kidney(5)|large_intestine(7)|lung(28)|ovary(3)|pancreas(1)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	69	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CATGGGGTCGGCCATAAGCCC	0.577000													3	22					0	0	0.115264	0	0
CCDC85A	114800	broad.mit.edu	37	2	56419682	56419682	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:56419682G>A	ENST00000407595.2	+	2	849	c.347G>A	c.(346-348)cGg>cAg	p.R116Q	RP11-482H16.1_ENST00000607540.1_RNA	NM_001080433.1	NP_001073902.1	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	116										breast(6)|cervix(2)|endometrium(5)|kidney(1)|lung(18)|ovary(2)|pancreas(1)|prostate(3)	38			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GATGATGACCGGCAGAAAGGC	0.527000													4	131					0	0	0.184627	0	0
MBTPS2	51360	broad.mit.edu	37	X	21896704	21896704	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:21896704C>G	ENST00000379484.5	+	9	1254	c.1155C>G	c.(1153-1155)ttC>ttG	p.F385L		NM_015884.3	NP_056968.1	O43462	MBTP2_HUMAN	membrane-bound transcription factor peptidase, site 2	385	Cys-rich.				cholesterol metabolic process|proteolysis	Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity			breast(2)|endometrium(3)|large_intestine(3)|lung(13)|ovary(1)|skin(2)	24						GTTCAAGTTTCTGTATAATAC	0.368000													3	92					0	0	0.150653	0	0
DBF4B	80174	broad.mit.edu	37	17	42800313	42800313	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr17:42800313G>T	ENST00000315005.3	+	3	286	c.148G>T	c.(148-150)Gga>Tga	p.G50*	DBF4B_ENST00000526915.1_3'UTR|DBF4B_ENST00000398338.3_Nonsense_Mutation_p.G50*|DBF4B_ENST00000393547.2_Nonsense_Mutation_p.G50*	NM_145663.2	NP_663696.1	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B (S. cerevisiae)	50	BRCT.				cell cycle	nucleus	nucleic acid binding|zinc ion binding			kidney(1)|large_intestine(1)|lung(5)	7		Prostate(33;0.0322)				TCCCTTTTCCGGAAAGTCCTT	0.483000													3	81					0.115264	0.125074	0.115264	1	0
CAGE1	285782	broad.mit.edu	37	6	7373569	7373569	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:7373569C>T	ENST00000502583.1	-	5	2047	c.1483G>A	c.(1483-1485)Gaa>Aaa	p.E495K	CAGE1_ENST00000512086.1_Missense_Mutation_p.E495K|CAGE1_ENST00000296742.7_Missense_Mutation_p.E359K|CAGE1_ENST00000338150.4_Missense_Mutation_p.E495K|CAGE1_ENST00000379918.4_Missense_Mutation_p.E495K	NM_001170692.1	NP_001164163.1	Q8TC20	CAGE1_HUMAN	cancer antigen 1	495										breast(1)|cervix(1)|endometrium(3)|kidney(2)|lung(11)|urinary_tract(1)	19	Ovarian(93;0.0418)					TTTTCCTTTTCAAGTTTCTGG	0.383000													5	10					0	0	0.217242	0	0
GBF1	8729	broad.mit.edu	37	10	104118446	104118446	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr10:104118446G>A	ENST00000369983.3	+	10	1231	c.971G>A	c.(970-972)gGa>gAa	p.G324E		NM_001199378.1|NM_001199379.1|NM_004193.2	NP_001186307.1|NP_001186308.1|NP_004184.1	Q92538	GBF1_HUMAN	golgi brefeldin A resistant guanine nucleotide exchange factor 1	324					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(14)|kidney(8)|large_intestine(15)|lung(19)|ovary(1)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	71		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		ACAGAGCCTGGAAGCAGTGAG	0.517000													7	85					0	0	0.278610	0	0
BDP1	55814	broad.mit.edu	37	5	70806121	70806121	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:70806121G>A	ENST00000358731.4	+	17	3465	c.3202G>A	c.(3202-3204)Gga>Aga	p.G1068R	BDP1_ENST00000380675.2_5'UTR	NM_018429.2	NP_060899.2	A6H8Y1	BDP1_HUMAN	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	1068	9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			NS(2)|breast(3)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(34)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	72		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GAAAGCAACTGGAAGAGACAG	0.428000													4	86					0	0	0.184627	0	0
ARAP2	116984	broad.mit.edu	37	4	36130163	36130163	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:36130163G>C	ENST00000303965.4	-	21	4121	c.3632C>G	c.(3631-3633)tCt>tGt	p.S1211C		NM_015230.3	NP_056045.2	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	1211	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(22)|liver(1)|lung(32)|ovary(2)|pancreas(1)|prostate(3)|skin(7)|urinary_tract(1)	82						ACCTAAAGCAGAGATCCAATA	0.368000													4	178					0	0	0.150653	0	0
SRSF9	8683	broad.mit.edu	37	12	120899848	120899848	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:120899848A>G	ENST00000229390.3	-	4	823	c.640T>C	c.(640-642)Tac>Cac	p.Y214H		NM_003769.2	NP_003760.1	Q13242	SRSF9_HUMAN	serine/arginine-rich splicing factor 9	214					mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|RNA binding			cervix(1)|endometrium(1)|large_intestine(1)|lung(3)|prostate(1)|skin(1)|urinary_tract(1)	9						GGAGAGAAGTAGTGTGGGGAA	0.488000													3	23					0	0	0.115264	0	0
PCK2	5106	broad.mit.edu	37	14	24566303	24566303	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:24566303G>C	ENST00000216780.4	+	2	500	c.232G>C	c.(232-234)Gag>Cag	p.E78Q	PCK2_ENST00000545054.2_5'UTR|PCK2_ENST00000558096.1_5'UTR|PCK2_ENST00000559250.1_Missense_Mutation_p.E90Q|PCK2_ENST00000396973.4_Missense_Mutation_p.E78Q|PCK2_ENST00000561286.1_Intron|NRL_ENST00000561028.1_Intron	NM_004563.2	NP_004554.2	Q16822	PCKGM_HUMAN	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	78					gluconeogenesis	mitochondrial matrix	GTP binding|metal ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			breast(2)|endometrium(2)|kidney(3)|large_intestine(3)|lung(5)|ovary(1)|prostate(1)|skin(1)	18				GBM - Glioblastoma multiforme(265;0.0184)		GACCCTGCTGGAGCAGCAGGG	0.552000													3	79					0	0	0.115264	0	0
BDP1	55814	broad.mit.edu	37	5	70805969	70805969	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:70805969G>A	ENST00000358731.4	+	17	3313	c.3050G>A	c.(3049-3051)aGa>aAa	p.R1017K	BDP1_ENST00000380675.2_5'UTR	NM_018429.2	NP_060899.2	A6H8Y1	BDP1_HUMAN	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	1017	9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			NS(2)|breast(3)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(34)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	72		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GCAACTGGAAGAGAGAGTTCT	0.438000													4	90					0	0	0.184627	0	0
PCLO	27445	broad.mit.edu	37	7	82583354	82583354	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:82583354C>A	ENST00000423517.2	-	5	7252	c.6915G>T	c.(6913-6915)aaG>aaT	p.K2305N	PCLO_ENST00000333891.8_Missense_Mutation_p.K2305N	NM_014510.2	NP_055325.2	Q9Y6V0	PCLO_HUMAN	piccolo presynaptic cytomatrix protein	2236	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			breast(3)|central_nervous_system(3)|cervix(5)|endometrium(19)|haematopoietic_and_lymphoid_tissue(3)|kidney(19)|large_intestine(35)|lung(145)|ovary(7)|prostate(4)|upper_aerodigestive_tract(14)|urinary_tract(2)	259						CAGTTTCCTTCTTGGCTTTCT	0.418000													6	364					3.59834e-05	4.1708e-05	0.217242	1	0
GPRASP2	114928	broad.mit.edu	37	X	101970801	101970801	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:101970801A>G	ENST00000543253.1	+	5	1923	c.1004A>G	c.(1003-1005)tAt>tGt	p.Y335C	GPRASP2_ENST00000535209.1_Missense_Mutation_p.Y335C|GPRASP2_ENST00000332262.5_Missense_Mutation_p.Y335C	NM_001004051.3|NM_001184874.2|NM_001184876.2	NP_001004051.1|NP_001171803.1|NP_001171805.1			G protein-coupled receptor associated sorting protein 2											breast(3)|endometrium(5)|kidney(2)|large_intestine(6)|lung(12)|ovary(1)|upper_aerodigestive_tract(1)	30						GATGAGTTCTATAAGCAGTCC	0.453000													10	169					0	0	0.361761	0	0
FLT1	2321	broad.mit.edu	37	13	28895620	28895620	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr13:28895620C>G	ENST00000282397.4	-	23	3405	c.3154G>C	c.(3154-3156)Gat>Cat	p.D1052H	FLT1_ENST00000543394.1_Missense_Mutation_p.D75H|FLT1_ENST00000540678.1_Missense_Mutation_p.D270H	NM_002019.4	NP_002010.2	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1	1052	Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			NS(1)|breast(2)|central_nervous_system(5)|endometrium(8)|kidney(3)|large_intestine(20)|lung(55)|ovary(3)|prostate(1)|skin(12)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	115	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CTCACATAATCGGGGTTCTTA	0.393000													3	95					0	0	0.115264	0	0
TRPM3	80036	broad.mit.edu	37	9	73150956	73150956	+	Silent	SNP	G	G	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr9:73150956G>T	ENST00000377110.2	-	25	5280	c.5037C>A	c.(5035-5037)tcC>tcA	p.S1679S	TRPM3_ENST00000396285.1_Silent_p.S1538S|TRPM3_ENST00000360823.2_Silent_p.S1541S|TRPM3_ENST00000396292.4_Silent_p.S1551S|TRPM3_ENST00000357533.2_Silent_p.S1683S|TRPM3_ENST00000358082.3_Silent_p.S1541S|TRPM3_ENST00000377105.1_Silent_p.S1538S|TRPM3_ENST00000377106.1_Silent_p.S1551S|TRPM3_ENST00000408909.2_Silent_p.S1538S|TRPM3_ENST00000396280.5_Silent_p.S1528S|TRPM3_ENST00000377111.2_Intron|TRPM3_ENST00000423814.3_Silent_p.S1706S	NM_001007471.2	NP_001007472.2	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel, subfamily M, member 3	1704						integral to membrane	calcium channel activity			NS(2)|breast(4)|central_nervous_system(2)|endometrium(6)|kidney(1)|large_intestine(18)|liver(1)|lung(46)|ovary(3)|pancreas(2)|prostate(5)|skin(4)|urinary_tract(1)	95						CCTCCGGCTTGGAGGACTTGC	0.517000													4	48					0.000602214	0.000667672	0.184627	1	0
EPHA1	2041	broad.mit.edu	37	7	143095523	143095523	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:143095523G>C	ENST00000275815.3	-	7	1441	c.1355C>G	c.(1354-1356)tCt>tGt	p.S452C		NM_005232.4	NP_005223.4	P21709	EPHA1_HUMAN	EPH receptor A1	452	Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(11)|lung(21)|ovary(4)|skin(1)|stomach(1)|urinary_tract(3)	51	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CAGTCTCAGAGACAGGCCTGA	0.547000													3	41					0	0	0.150653	0	0
RASGRF1	5923	broad.mit.edu	37	15	79284064	79284064	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:79284064C>G	ENST00000419573.3	-	22	3422	c.3148G>C	c.(3148-3150)Gat>Cat	p.D1050H	RASGRF1_ENST00000558480.2_Missense_Mutation_p.D1034H|RASGRF1_ENST00000394745.3_Missense_Mutation_p.D266H|RASGRF1_ENST00000560334.1_5'UTR	NM_002891.4	NP_002882.3	Q13972	RGRF1_HUMAN	Ras protein-specific guanine nucleotide-releasing factor 1	1052	Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|endometrium(7)|kidney(4)|large_intestine(18)|lung(23)|ovary(2)|prostate(6)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	71						ACGAGGTGATCTAGCAGGGTC	0.562000													5	61					0	0	0.184627	0	0
EGFR	1956	broad.mit.edu	37	7	55268972	55268972	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:55268972C>T	ENST00000275493.2	+	25	3215	c.3038C>T	c.(3037-3039)gCc>gTc	p.A1013V	EGFR_ENST00000442591.1_Intron|EGFR_ENST00000454757.2_Missense_Mutation_p.A960V|EGFR_ENST00000455089.1_Missense_Mutation_p.A968V	NM_005228.3	NP_005219.2	P00533	EGFR_HUMAN	epidermal growth factor receptor	1013					activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			NS(2)|adrenal_gland(5)|biliary_tract(8)|bone(3)|breast(18)|central_nervous_system(106)|endometrium(26)|eye(3)|haematopoietic_and_lymphoid_tissue(9)|kidney(11)|large_intestine(85)|liver(2)|lung(13575)|oesophagus(21)|ovary(38)|pancreas(3)|peritoneum(11)|pleura(2)|prostate(35)|salivary_gland(11)|skin(9)|small_intestine(1)|soft_tissue(4)|stomach(41)|thymus(2)|thyroid(14)|upper_aerodigestive_tract(59)|urinary_tract(6)	14110	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GTGGTGGATGCCGACGAGTAC	0.552000		8	"""A, O, Mis"""		"""glioma, NSCLC"""	NSCLC			Lung Cancer, Familial Clustering of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			5	275					0	0	0.217242	0	0
HLA-DQB2	3120	broad.mit.edu	37	6	32725653	32725653	+	Silent	SNP	C	C	T	rs144961216		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:32725653C>T	ENST00000435145.2	-	4	715	c.654G>A	c.(652-654)caG>caA	p.Q218Q	HLA-DQB2_ENST00000411527.1_Intron|HLA-DQB2_ENST00000437316.2_Silent_p.Q218Q			Q5SR06	Q5SR06_HUMAN	major histocompatibility complex, class II, DQ beta 2	216					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	integral to membrane|MHC class II protein complex				endometrium(1)|kidney(1)|lung(1)|prostate(2)	5						CAGATTCAGACTGAGCCCCTA	0.557000													5	25					0	0	0.278610	0	0
MUC7	4589	broad.mit.edu	37	4	71347033	71347033	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:71347033C>T	ENST00000413702.1	+	4	860	c.572C>T	c.(571-573)gCc>gTc	p.A191V	MUC7_ENST00000456088.1_Missense_Mutation_p.A191V|MUC7_ENST00000304887.5_Missense_Mutation_p.A191V	NM_001145006.1	NP_001138478.1	Q8TAX7	MUC7_HUMAN	mucin 7, secreted	191	Thr-rich.					extracellular region	protein binding	p.A191V(1)		central_nervous_system(1)|endometrium(3)|kidney(5)|large_intestine(2)|lung(23)|ovary(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	42			Lung(101;0.211)			ACCACAGCTGCCCCACCCACA	0.587000													5	202					0	0	0.361761	0	0
RYR2	6262	broad.mit.edu	37	1	237758937	237758937	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:237758937G>C	ENST00000366574.2	+	34	4893	c.4576G>C	c.(4576-4578)Gaa>Caa	p.E1526Q	RYR2_ENST00000542537.1_Missense_Mutation_p.E1510Q|RYR2_ENST00000360064.6_Missense_Mutation_p.E1524Q	NM_001035.2	NP_001026.2	Q92736	RYR2_HUMAN	ryanodine receptor 2 (cardiac)	1526	4 X approximate repeats.|B30.2/SPRY 3.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			NS(4)|breast(8)|central_nervous_system(11)|cervix(2)|endometrium(39)|haematopoietic_and_lymphoid_tissue(5)|kidney(17)|large_intestine(83)|liver(4)|lung(353)|ovary(18)|pancreas(5)|prostate(12)|skin(8)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(4)	586	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAATGGCAAGGAACTGAGCAC	0.498000													3	103					0	0	0.115264	0	0
TGFBR3	7049	broad.mit.edu	37	1	92185501	92185501	+	Silent	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:92185501G>C	ENST00000212355.4	-	9	1827	c.1362C>G	c.(1360-1362)gtC>gtG	p.V454V	TGFBR3_ENST00000525962.1_Silent_p.V454V|TGFBR3_ENST00000370399.2_Silent_p.V453V	NM_001195683.1|NM_003243.4	NP_001182612.1|NP_003234.2	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	454					BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(24)|ovary(3)|prostate(4)|skin(1)|stomach(1)|urinary_tract(3)	55		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		TGTCACATTTGACAGACAGGG	0.502000													4	167					0	0	0.150653	0	0
ZFHX3	463	broad.mit.edu	37	16	72828497	72828497	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:72828497C>T	ENST00000268489.5	-	9	8756	c.8084G>A	c.(8083-8085)cGg>cAg	p.R2695Q	ZFHX3_ENST00000397992.5_Missense_Mutation_p.R1781Q	NM_006885.3	NP_008816.3	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3	2695					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			NS(3)|breast(7)|cervix(2)|endometrium(18)|haematopoietic_and_lymphoid_tissue(5)|kidney(8)|large_intestine(22)|liver(1)|lung(46)|ovary(5)|pancreas(1)|prostate(15)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(11)	153		Ovarian(137;0.13)				TTTCCTTTCCCGAGCTCGGGT	0.542000													4	182					0	0	0.150653	0	0
FGD5	152273	broad.mit.edu	37	3	14965637	14965637	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:14965637C>A	ENST00000285046.5	+	17	4170	c.4060C>A	c.(4060-4062)Ctg>Atg	p.L1354M	FGD5-AS1_ENST00000430166.1_RNA|FGD5_ENST00000543601.1_Missense_Mutation_p.L1113M|FGD5_ENST00000476851.1_3'UTR	NM_152536.3	NP_689749.3	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1354					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			NS(2)|breast(2)|endometrium(3)|kidney(5)|large_intestine(10)|lung(25)|ovary(3)|pancreas(1)|prostate(2)|urinary_tract(1)	54						CCCTTCAGCCCTGACAGAGGT	0.567000													4	209					0.000602214	0.000667672	0.184627	1	0
ZNF442	79973	broad.mit.edu	37	19	12461610	12461610	+	Silent	SNP	T	T	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr19:12461610T>C	ENST00000242804.4	-	6	1371	c.789A>G	c.(787-789)aaA>aaG	p.K263K	ZNF442_ENST00000438182.1_Silent_p.K194K	NM_030824.2	NP_110451.1	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	263					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(8)|lung(8)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	31						ATTCATATGGTTTCTCCCCAG	0.403000													5	155					0	0	0.335167	0	0
BDP1	55814	broad.mit.edu	37	5	70806122	70806122	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:70806122G>A	ENST00000358731.4	+	17	3466	c.3203G>A	c.(3202-3204)gGa>gAa	p.G1068E	BDP1_ENST00000380675.2_5'UTR	NM_018429.2	NP_060899.2	A6H8Y1	BDP1_HUMAN	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	1068	9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			NS(2)|breast(3)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(34)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	72		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AAAGCAACTGGAAGAGACAGT	0.433000													4	86					0	0	0.150653	0	0
HLA-DQB2	3120	broad.mit.edu	37	6	32725559	32725559	+	Missense_Mutation	SNP	C	C	T	rs113761247	byFrequency	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:32725559C>T	ENST00000435145.2	-	4	809	c.748G>A	c.(748-750)Ggt>Agt	p.G250S	HLA-DQB2_ENST00000411527.1_Intron|HLA-DQB2_ENST00000437316.2_Missense_Mutation_p.G250S			Q5SR06	Q5SR06_HUMAN	major histocompatibility complex, class II, DQ beta 2	216					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	integral to membrane|MHC class II protein complex				endometrium(1)|kidney(1)|lung(1)|prostate(2)	5						CCTTTCTGACCCCTGTGACGG	0.552000													4	30					0	0	0.184627	0	0
GNL3L	54552	broad.mit.edu	37	X	54578086	54578086	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:54578086A>C	ENST00000336470.4	+	11	1088	c.949A>C	c.(949-951)Acc>Ccc	p.T317P	GNL3L_ENST00000360845.2_Missense_Mutation_p.T317P	NM_019067.5	NP_061940.1	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3 (nucleolar)-like	317	G.				ribosome biogenesis	nucleolus	GTP binding			NS(1)|breast(2)|endometrium(7)|kidney(2)|large_intestine(5)|lung(10)|ovary(1)|skin(1)|urinary_tract(1)	30						AGAGGTGGGCACCATCCTGCG	0.617000													5	30					0	0	0.307466	0	0
UCK2	7371	broad.mit.edu	37	1	165872499	165872499	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:165872499G>C	ENST00000367879.4	+	5	883	c.580G>C	c.(580-582)Gag>Cag	p.E194Q	UCK2_ENST00000372212.4_3'UTR|UCK2_ENST00000479872.1_3'UTR	NM_012474.4	NP_036606.2	Q9BZX2	UCK2_HUMAN	uridine-cytidine kinase 2	194					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity			breast(1)|endometrium(2)|large_intestine(2)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	10	all_hematologic(923;0.048)|Acute lymphoblastic leukemia(8;0.155)					GCCTGCCTTTGAGGAATTCTG	0.398000													4	197					0	0	0.150653	0	0
LOC101927876	101927876	broad.mit.edu	37	1	18396184	18396184	+	RNA	DEL	A	A	-	rs76056473		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:18396184delA	ENST00000569711.1	+	0	278																											caaaaaaaggaaaaaaaaata	0.433													2	4	---	---	---	---					
LINC01389	102724077	broad.mit.edu	37	1	47855371	47855372	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:47855371_47855372insC	ENST00000420876.1	-	0	158																											CCACCACGCCGCCCCCCCCACA	0.525													2	4	---	---	---	---					
RP11-466L17.1	0	broad.mit.edu	37	1	56050629	56050629	+	RNA	DEL	T	T	-	rs66983272		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:56050629delT	ENST00000422374.1	+	0	158																											GCTCAACCCCTTCCCAGTGCT	0.547													3	4	---	---	---	---					
RP11-466L17.1	0	broad.mit.edu	37	1	56104490	56104490	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:56104490delC	ENST00000422374.1	+	0	240																											TCTTAGTTGGCTTTGAATATA	0.348													2	4	---	---	---	---					
LOC101926964	101926964	broad.mit.edu	37	1	61229732	61229733	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:61229732_61229733insC	ENST00000423403.1	-	0	249																											AAGCTGATATTCCCCCCAAAAT	0.391													2	4	---	---	---	---					
GNG12-AS1	100289178	broad.mit.edu	37	1	68502906	68502906	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:68502906delA	ENST00000420587.1	+	0	251				GNG12-AS1_ENST00000413628.1_RNA	NR_040077.1		Q6ZVV5	Q6ZVV5_HUMAN																			ctgtggtggtaattacataaa	0.358													2	4	---	---	---	---					
LINC01362	103283057	broad.mit.edu	37	1	83470849	83470849	+	RNA	DEL	A	A	-	rs67297945		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:83470849delA	ENST00000452901.1	+	0	1056																											catagaaaagaaaaaaaaatt	0.299													2	4	---	---	---	---					
RP11-782C8.2	0	broad.mit.edu	37	1	143146077	143146078	+	RNA	INS	-	-	A	rs146576777		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:143146077_143146078insA	ENST00000412204.2	-	0	2503				RP11-782C8.1_ENST00000438000.1_lincRNA																							gactctgtctcaaaaaaaaata	0.411													5	7	---	---	---	---					
LOC400794	400794	broad.mit.edu	37	1	165489163	165489164	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:165489163_165489164insT	ENST00000438275.1	-	0	1146				RP11-280O1.2_ENST00000421273.1_RNA|RP11-280O1.2_ENST00000416424.1_RNA|RP11-280O1.2_ENST00000415000.1_RNA|RP11-280O1.2_ENST00000452283.1_RNA																							atttaaaatagtttttttctaa	0.292													2	4	---	---	---	---					
RP11-306I1.2	0	broad.mit.edu	37	1	165591964	165591965	+	RNA	INS	-	-	AC	rs144010395	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:165591964_165591965insAC	ENST00000452618.1	+	0	405																											gagagagacagagagagagaga	0.460													4	5	---	---	---	---					
RP1-15D23.2	0	broad.mit.edu	37	1	172901147	172901148	+	RNA	INS	-	-	AA	rs112487282		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:172901147_172901148insAA	ENST00000432694.1	+	0	223																											gaattttctttaaaaaaaaaaa	0.342													2	4	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177383674	177383674	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:177383674delT	ENST00000438575.1	-	0	296																											GATGGAATGATTTTTTTTTTT	0.393													2	4	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177494054	177494054	+	RNA	DEL	A	A	-	rs10716131		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:177494054delA	ENST00000438575.1	-	0	296																											TAAATTCCTGAAAACTCAGGA	0.348													5	8	---	---	---	---					
LINC01344	400799	broad.mit.edu	37	1	182262554	182262555	+	RNA	INS	-	-	CAGCCCT	rs33947679	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:182262554_182262555insCAGCCCT	ENST00000449842.1	-	0	410																											CCAGCCCATCCCAGTGACCTCA	0.510													3	4	---	---	---	---					
LOC440704	440704	broad.mit.edu	37	1	190769109	190769112	+	RNA	DEL	GTGT	GTGT	-	rs6143537		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:190769109_190769112delGTGT	ENST00000413356.1	+	0	537_540					NR_033922.1																						accaaatatggtgtgtgtgtgtgt	0.324													3	5	---	---	---	---					
LOC400800	400800	broad.mit.edu	37	1	199199397	199199397	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:199199397delA	ENST00000452199.1	+	0	309																											atggaagaagaaaaaaaaaag	0.343													2	4	---	---	---	---					
LOC91548	91548	broad.mit.edu	37	1	211859525	211859526	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:211859525_211859526insC	ENST00000421933.1	+	0	856				RP11-122M14.1_ENST00000415202.1_RNA																							GGTTTTCAGTACCCCCCCCAGC	0.559													3	6	---	---	---	---					
RP11-323I1.1	0	broad.mit.edu	37	1	213931922	213931922	+	RNA	DEL	A	A	-	rs56367659		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:213931922delA	ENST00000456240.1	+	0	143																											actctgtctcaaaaaaaaaaa	0.443													3	5	---	---	---	---					
PROX1-AS1	100505832	broad.mit.edu	37	1	214098201	214098202	+	RNA	INS	-	-	C	rs147210776	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:214098201_214098202insC	ENST00000433082.2	-	0	195				PROX1-AS1_ENST00000598105.1_RNA|PROX1-AS1_ENST00000601854.1_RNA|PROX1-AS1_ENST00000601335.1_RNA|PROX1-AS1_ENST00000600591.1_RNA|PROX1-AS1_ENST00000593620.1_RNA|PROX1-AS1_ENST00000601907.1_RNA|PROX1-AS1_ENST00000601744.1_RNA|PROX1-AS1_ENST00000413560.1_RNA																							atttctcttctagatctttgca	0.406													5	6	---	---	---	---					
PROX1-AS1	100505832	broad.mit.edu	37	1	214137504	214137505	+	RNA	INS	-	-	TACG	rs71573891	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:214137504_214137505insTACG	ENST00000433082.2	-	0	195				PROX1-AS1_ENST00000598105.1_RNA|PROX1-AS1_ENST00000601854.1_RNA|PROX1-AS1_ENST00000601335.1_RNA|PROX1-AS1_ENST00000601907.1_RNA|PROX1-AS1_ENST00000601744.1_RNA|PROX1-AS1_ENST00000413560.1_RNA																							atgcatatatatacgtatgtgt	0.282													5	1	---	---	---	---					
LYPLAL1-AS1	643723	broad.mit.edu	37	1	219279615	219279615	+	RNA	DEL	T	T	-	rs111376110		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:219279615delT	ENST00000441331.1	-	0	665																											tagttgggtcttttttttttt	0.289													4	2	---	---	---	---					
ITPKB	3707	broad.mit.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	CTGCCGCTG	-	rs11278152		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:226924876_226924884delCTGCCGCTG	ENST00000429204.1	-	2	603_611	c.276_284delCAGCGGCAG	c.(274-285)agt>ag	p.SSGS92del	ITPKB_ENST00000366784.1_In_Frame_Del_p.SSGS92del|ITPKB_ENST00000272117.3_In_Frame_Del_p.SSGS92del	NM_002221.3	NP_002212.3	P27987	IP3KB_HUMAN	inositol-trisphosphate 3-kinase B	92							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(4)|lung(13)|ovary(4)|prostate(1)|skin(1)	30		Prostate(94;0.0773)				GCTCACgctactgccgctgctgccgctgc	0.746													2	4	---	---	---	---					
RP4-803J11.2	0	broad.mit.edu	37	1	229455331	229455332	+	RNA	INS	-	-	CA	rs148803727	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:229455331_229455332insCA	ENST00000418348.1	+	0	182_183																											ggggaagggctagtgttcataa	0.485													2	4	---	---	---	---					
LOC101927787	101927787	broad.mit.edu	37	1	234811424	234811425	+	RNA	DEL	TG	TG	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr1:234811424_234811425delTG	ENST00000442382.1	-	0	96																											tgtgtgtgcatgtgtgtgtgtg	0.455													3	5	---	---	---	---					
AC105393.1	0	broad.mit.edu	37	2	390453	390454	+	RNA	DEL	GT	GT	-	rs10701639		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:390453_390454delGT	ENST00000431911.1	+	0	186																											gtacacgtgcgtgtgtgtgtgc	0.376													2	4	---	---	---	---					
LINC01250	101927554	broad.mit.edu	37	2	3109060	3109061	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:3109060_3109061insG	ENST00000457478.1	-	0	438																											agcagggggttgggggtggggt	0.455													2	4	---	---	---	---					
LINC00299	339789	broad.mit.edu	37	2	8440446	8440449	+	RNA	DEL	ACCA	ACCA	-	rs148592967		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:8440446_8440449delACCA	ENST00000442956.1	-	0	453																											aggggcagccaccatggtgaatta	0.520													4	2	---	---	---	---					
LOC100506457	100506457	broad.mit.edu	37	2	12553964	12553965	+	RNA	DEL	TG	TG	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:12553964_12553965delTG	ENST00000412294.1	+	0	412																											actaactcactgtgtgatttgg	0.460													5	4	---	---	---	---					
GACAT3	104797537	broad.mit.edu	37	2	16195623	16195624	+	RNA	INS	-	-	A	rs144704325		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:16195623_16195624insA	ENST00000426539.1	+	0	251				AC010145.4_ENST00000422415.2_lincRNA																							gactctgtctcaaaaaaaaaaa	0.436													2	4	---	---	---	---					
LOC100507562	100507562	broad.mit.edu	37	2	21624227	21624228	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:21624227_21624228insT	ENST00000417609.1	+	0	302																											aatcaggactgttttgtcctat	0.421													2	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22296202	22296202	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:22296202delG	ENST00000450551.1	-	0	200																											aaacttatgtggaaccaaaaa	0.338													2	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22519233	22519234	+	RNA	INS	-	-	A	rs148208577	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:22519233_22519234insA	ENST00000450551.1	-	0	70																											caatctaatacaaaaaatggca	0.277													3	4	---	---	---	---					
LINC00486	285045	broad.mit.edu	37	2	33098855	33098855	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:33098855delT	ENST00000414054.1	+	0	289					NR_027098.1																						aattatagcatttccaaattt	0.398													2	4	---	---	---	---					
LINC01317	104355287	broad.mit.edu	37	2	34107544	34107544	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:34107544delA	ENST00000366209.2	+	0	134																											AAAAAAAGAGAGGGTAGGTAA	0.378													2	4	---	---	---	---					
LINC01317	104355287	broad.mit.edu	37	2	34262028	34262029	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:34262028_34262029insC	ENST00000366209.2	+	0	389																											actgcctgcttccccccaagag	0.401													2	4	---	---	---	---					
CYP1B1-AS1	285154	broad.mit.edu	37	2	38401955	38401956	+	RNA	INS	-	-	T	rs79401151	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:38401955_38401956insT	ENST00000413828.2	+	0	190					NR_027252.1																						CATAGCCACAATTTTTTTCCAG	0.406													3	5	---	---	---	---					
AC079807.4	0	broad.mit.edu	37	2	48258413	48258413	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:48258413delA	ENST00000447571.1	-	0	240																		p.0?(2)									aagactccagaaaaaaaaaaa	0.448													4	5	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	51374173	51374173	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:51374173delC	ENST00000440698.1	+	0	514																											gtgtgagccaccacacctggc	0.398													2	4	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	52026540	52026540	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:52026540delA	ENST00000440698.1	+	0	839																											aagactaaggaaaaaaaaaaa	0.343													2	4	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59733159	59733159	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:59733159delG	ENST00000606382.1	-	0	433																											ATCAGCCGGTGGGTTTAATAA	0.433													2	4	---	---	---	---					
LOC101927438	101927438	broad.mit.edu	37	2	65088230	65088231	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:65088230_65088231insC	ENST00000445865.1	-	0	213																											cctagtcacttcccccaaccct	0.366													2	4	---	---	---	---					
AC106874.1	0	broad.mit.edu	37	2	84561536	84561536	+	RNA	DEL	A	A	-	rs56797469		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:84561536delA	ENST00000440495.1	+	0	152																											aagacaaatcaaaaaaaaaaa	0.318													2	4	---	---	---	---					
MFSD9	84804	broad.mit.edu	37	2	103334977	103334978	+	Frame_Shift_Ins	INS	-	-	G	rs145424077		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:103334977_103334978insG	ENST00000258436.5	-	6	1369_1370	c.1326_1327insC	c.(1324-1329)ccgcctfs	p.P443fs		NM_032718.3	NP_116107.3	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing 9	443					transmembrane transport	integral to membrane|plasma membrane	transporter activity			breast(3)|large_intestine(7)|liver(1)|lung(6)|ovary(2)|skin(1)	20						GCGCCCAGGCTGGGGGGGCCGC	0.554													7	64	---	---	---	---					
NPHP1	4867	broad.mit.edu	37	2	110926097	110926098	+	Frame_Shift_Ins	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:110926097_110926098insT	ENST00000316534.4	-	6	628_629	c.555_556insA	c.(553-558)aactgafs	p.N*185fs	NPHP1_ENST00000417665.1_Frame_Shift_Ins_p.N*185fs|NPHP1_ENST00000393272.3_Frame_Shift_Ins_p.N*185fs|NPHP1_ENST00000355301.4_Frame_Shift_Ins_p.N*123fs|NPHP1_ENST00000445609.2_Frame_Shift_Ins_p.N*185fs			O15259	NPHP1_HUMAN	nephronophthisis 1 (juvenile)	185	SH3.				actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			autonomic_ganglia(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(6)|lung(10)|ovary(2)	24						CAACCATCAGGTTTTTTTTCAA	0.342													7	182	---	---	---	---					
AC097499.1	0	broad.mit.edu	37	2	126511285	126511286	+	RNA	INS	-	-	TT	rs76881448		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:126511285_126511286insTT	ENST00000430692.1	+	0	402																											atatatttttcttttttttttt	0.485													2	4	---	---	---	---					
LOC101927924	101927924	broad.mit.edu	37	2	130689407	130689408	+	RNA	INS	-	-	A	rs60392744		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:130689407_130689408insA	ENST00000450840.1	+	0	223				AC079776.2_ENST00000433290.1_RNA																							gagcctgtctgaaaaaaaaaaa	0.441													5	3	---	---	---	---					
LOC101929231	101929231	broad.mit.edu	37	2	150470325	150470325	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:150470325delC	ENST00000449714.1	+	0	655																											ATTTAAACCACCAAAATTGCA	0.328													2	4	---	---	---	---					
SLC4A10	57282	broad.mit.edu	37	2	162379301	162379302	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:162379301_162379302insT	ENST00000605990.1	+	0	344																											ggctaattttgtttttttttgt	0.475													2	4	---	---	---	---					
AC092684.1	0	broad.mit.edu	37	2	164890074	164890075	+	RNA	INS	-	-	TGTGTG	rs4001123	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:164890074_164890075insTGTGTG	ENST00000429636.1	-	0	196																											ctctctctctctgtgtgtgtgt	0.406													3	4	---	---	---	---					
AC092684.1	0	broad.mit.edu	37	2	165130962	165130963	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:165130962_165130963insT	ENST00000429636.1	-	0	104																											AAGAAtttttgtttttgtcttt	0.302													2	4	---	---	---	---					
AC092684.1	0	broad.mit.edu	37	2	165137334	165137334	+	RNA	DEL	G	G	-	rs112153045		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:165137334delG	ENST00000429636.1	-	0	104																											acttattactgattaatttcc	0.348													4	3	---	---	---	---					
SCN1A	6323	broad.mit.edu	37	2	166937141	166937142	+	RNA	DEL	AG	AG	-	rs74314047		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:166937141_166937142delAG	ENST00000595647.1	+	0	424				AC010127.3_ENST00000599041.1_RNA																							TAAAGAAGACAGGAAAAAAATA	0.312													4	3	---	---	---	---					
LOC101927156	101927156	broad.mit.edu	37	2	182104344	182104345	+	RNA	DEL	GT	GT	-	rs10557775		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:182104344_182104345delGT	ENST00000435411.1	+	0	209																											CGGGAGTGGAgtgtgtgtgtgt	0.391													5	3	---	---	---	---					
ITGA4	3676	broad.mit.edu	37	2	182374525	182374526	+	Frame_Shift_Ins	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:182374525_182374526insA	ENST00000397033.2	+	16	2266_2267	c.1836_1837insA	c.(1834-1839)ataaaafs	p.IK612fs		NM_000885.4	NP_000876.3	P13612	ITA4_HUMAN	integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	612					blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			breast(3)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(9)|lung(27)|ovary(3)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	58			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AAGACATAATGAAAAAAACAGT	0.332													7	239	---	---	---	---					
AC079613.1	0	broad.mit.edu	37	2	189485361	189485361	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:189485361delT	ENST00000431708.1	-	0	465																											AGCTATTCAGTTGCATAGTTC	0.313													2	4	---	---	---	---					
AC079613.1	0	broad.mit.edu	37	2	189698868	189698869	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:189698868_189698869insC	ENST00000431708.1	-	0	160																											ttggatatttgcccccccaact	0.391													3	6	---	---	---	---					
AC013401.1	0	broad.mit.edu	37	2	193499390	193499390	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:193499390delT	ENST00000414394.1	+	0	96																											gctaaagagctttaggagtct	0.537													2	4	---	---	---	---					
PCGEM1	64002	broad.mit.edu	37	2	193615439	193615440	+	RNA	INS	-	-	T	rs71912598		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:193615439_193615440insT	ENST00000454040.1	+	0	184					NR_002769.1																						ATTCTGGTTGATTTTTTTTTTT	0.277													2	4	---	---	---	---					
AC009498.1	0	broad.mit.edu	37	2	205097310	205097311	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:205097310_205097311insA	ENST00000419860.1	-	0	194																											TGGAAGCATGGAAAAAAAGAGA	0.401													2	4	---	---	---	---					
AC007879.5	0	broad.mit.edu	37	2	208207493	208207495	+	RNA	DEL	CAT	CAT	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:208207493_208207495delCAT	ENST00000418850.1	-	0	400				AC007879.5_ENST00000412387.1_RNA																							AGGAAAGGAACATCATCATCATC	0.345													2	4	---	---	---	---					
AC097468.7	0	broad.mit.edu	37	2	219822977	219822978	+	RNA	DEL	AC	AC	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:219822977_219822978delAC	ENST00000429343.1	-	0	45																											ATCTGCAGTGACACACACACAC	0.525													4	6	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221380529	221380532	+	RNA	DEL	AAAC	AAAC	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:221380529_221380532delAAAC	ENST00000414512.1	+	0	368																											ggcttcagttaaacaaataacaga	0.422													3	3	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221508889	221508889	+	RNA	DEL	A	A	-	rs5838817		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:221508889delA	ENST00000414512.1	+	0	898																											TCCGGTAATTAAAAAAAAAAT	0.343													4	2	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221554513	221554513	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:221554513delT	ENST00000414512.1	+	0	898																											gcacatgttgtttgctcttcc	0.433													2	4	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221564376	221564377	+	RNA	INS	-	-	GGTTTC	rs146640516	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr2:221564376_221564377insGGTTTC	ENST00000414512.1	+	0	898																											tctgaactatggatctgtaaca	0.381													2	4	---	---	---	---					
AC026188.1	0	broad.mit.edu	37	3	3434337	3434337	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:3434337delG	ENST00000455703.1	-	0	59																											CCAGATCGCTGGGGAAAATGG	0.498													2	4	---	---	---	---					
AC069277.2	0	broad.mit.edu	37	3	6644127	6644128	+	RNA	INS	-	-	T	rs115462314	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:6644127_6644128insT	ENST00000433639.1	+	0	194																											AGGTTTTGGGGTTTTTTTTGGT	0.327													3	5	---	---	---	---					
LMCD1-AS1	100288428	broad.mit.edu	37	3	8230453	8230454	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:8230453_8230454insA	ENST00000446281.1	-	0	514																											AGGTGTTTAGCAAAATGCCTCT	0.366													2	4	---	---	---	---					
AC133680.1	0	broad.mit.edu	37	3	24820269	24820270	+	RNA	DEL	GT	GT	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:24820269_24820270delGT	ENST00000455576.1	+	0	132																											gtgtgtgtgcgtgtgtgtgtgt	0.530													4	4	---	---	---	---					
RP11-761N21.1	0	broad.mit.edu	37	3	40823837	40823837	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:40823837delA	ENST00000412811.1	+	0	265																											CGTCTCCTGTACCTCTCCTGT	0.532													2	4	---	---	---	---					
SUCLG2-AS1	101927111	broad.mit.edu	37	3	67977232	67977232	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:67977232delA	ENST00000482677.1	+	0	1653																											aaaagctaggaaaggaggaag	0.303													2	4	---	---	---	---					
RP11-260O18.1	0	broad.mit.edu	37	3	82064515	82064515	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:82064515delT	ENST00000470263.1	+	0	244																											actaaataacttttttttttt	0.428													3	5	---	---	---	---					
LINC00971	440970	broad.mit.edu	37	3	84767714	84767714	+	RNA	DEL	T	T	-	rs148900976		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:84767714delT	ENST00000484892.1	-	0	1846					NR_033860.1																						CTCTATATGATTTTTTTTTTA	0.294													2	4	---	---	---	---					
RP11-457K10.1	0	broad.mit.edu	37	3	109460742	109460742	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:109460742delA	ENST00000485384.1	+	0	29																											TTCCCAGCAGAAAAAAAAAAA	0.333													3	3	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	118004428	118004428	+	RNA	DEL	A	A	-	rs56332213		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:118004428delA	ENST00000482142.1	-	0	232																											AAATGCATACAAAAAAATAAG	0.323													5	2	---	---	---	---					
CPHL1P	389160	broad.mit.edu	37	3	149005928	149005928	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:149005928delT	ENST00000489011.1	+	0	401				CPHL1P_ENST00000482639.2_RNA																							actgaaggtgtttttttgctg	0.522													2	4	---	---	---	---					
ERICH6-AS1	101928085	broad.mit.edu	37	3	150421899	150421900	+	RNA	INS	-	-	C	rs34009900	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr3:150421899_150421900insC	ENST00000475393.1	+	0	20				RP11-103G8.2_ENST00000471093.1_RNA																							TTCTGTCCCTGCTCTTCAGCGT	0.545													5	6	---	---	---	---					
LINC01182	101929071	broad.mit.edu	37	4	13861795	13861796	+	RNA	INS	-	-	A	rs75267264		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:13861795_13861796insA	ENST00000510907.1	+	0	349																											GTTGTTACATTAAAAAAAAAAA	0.396													2	4	---	---	---	---					
LINC01182	101929071	broad.mit.edu	37	4	13916526	13916527	+	RNA	DEL	AC	AC	-	rs72209931		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:13916526_13916527delAC	ENST00000510907.1	+	0	349																											caTACTTACAacacacacacac	0.391													5	6	---	---	---	---					
LINC00504	201853	broad.mit.edu	37	4	14806686	14806686	+	RNA	DEL	A	A	-	rs76716312		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:14806686delA	ENST00000505089.1	-	0	185																											TGTGCTGTGGAAAAAAAAAAA	0.343													2	4	---	---	---	---					
LINC00504	201853	broad.mit.edu	37	4	14871093	14871093	+	RNA	DEL	A	A	-	rs142274404		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:14871093delA	ENST00000505089.1	-	0	111																											ATGTAATACCAAAAAAAAAAA	0.363													2	4	---	---	---	---					
TAPT1-AS1	202020	broad.mit.edu	37	4	16316289	16316289	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:16316289delG	ENST00000573950.1	+	0	434																											CTACTGGTAAGGAAGGAAGAC	0.488													2	4	---	---	---	---					
RP11-552M14.1	0	broad.mit.edu	37	4	23122849	23122850	+	RNA	INS	-	-	ATG	rs150883425	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:23122849_23122850insATG	ENST00000503394.1	+	0	212																											ATGTCTATGGAATGATTCTGTT	0.347													5	6	---	---	---	---					
RP11-542G1.1	0	broad.mit.edu	37	4	76255809	76255809	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:76255809delT	ENST00000505930.1	-	0	41																											cccagctaacttttttttgta	0.552													2	4	---	---	---	---					
RP11-10L7.1	0	broad.mit.edu	37	4	89242027	89242027	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:89242027delG	ENST00000500009.2	+	0	413																											CCTTAGTTCTGAGAAATGTGG	0.532													2	4	---	---	---	---					
RP11-431J17.1	0	broad.mit.edu	37	4	98051000	98051000	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:98051000delA	ENST00000517407.1	+	0	65																											caagcatatgaaaaagtgctc	0.343													2	4	---	---	---	---					
RP11-659O3.1	0	broad.mit.edu	37	4	117038746	117038746	+	RNA	DEL	A	A	-	rs74422257		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:117038746delA	ENST00000509983.1	-	0	333																											gcaacaaagtaaaaaaaaaaa	0.264													3	4	---	---	---	---					
LINC01378	103689918	broad.mit.edu	37	4	118371245	118371245	+	RNA	DEL	A	A	-	rs78904667		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:118371245delA	ENST00000422145.3	+	0	159																											ccactacaacaaaaaaaaaaa	0.348													2	4	---	---	---	---					
RP11-679C8.2	0	broad.mit.edu	37	4	121003243	121003244	+	RNA	DEL	TG	TG	-	rs112400167		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:121003243_121003244delTG	ENST00000503073.1	+	0	44				RP11-679C8.2_ENST00000511064.1_RNA|RP11-679C8.2_ENST00000508362.1_RNA|RP11-679C8.2_ENST00000504106.1_RNA																							AGGCCAGATTtgtgtgtgtgtg	0.386													3	6	---	---	---	---					
RP11-679C8.2	0	broad.mit.edu	37	4	121130623	121130624	+	RNA	INS	-	-	TC	rs34218672	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:121130623_121130624insTC	ENST00000508362.1	+	0	138				RP11-679C8.2_ENST00000504106.1_RNA																							ctctgtctctgtctctctctct	0.441													3	6	---	---	---	---					
RP11-125O18.1	0	broad.mit.edu	37	4	128237366	128237366	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:128237366delG	ENST00000504050.1	-	0	368																											atagacaagtgggactacatc	0.328													2	4	---	---	---	---					
LINC01256	104355285	broad.mit.edu	37	4	133574021	133574021	+	RNA	DEL	T	T	-	rs148819620		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:133574021delT	ENST00000513270.1	+	0	323																											ggttgttctattttttttttt	0.318													3	4	---	---	---	---					
LINC00616	641365	broad.mit.edu	37	4	138984234	138984236	+	RNA	DEL	AAG	AAG	-	rs140604609		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:138984234_138984236delAAG	ENST00000514600.1	-	0	870				SLC7A11-AS1_ENST00000510066.1_RNA	NR_037866.1																						acgtaacacaaagaaggagagag	0.429													3	4	---	---	---	---					
SLC7A11-AS1	641364	broad.mit.edu	37	4	139076393	139076393	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:139076393delT	ENST00000510767.1	+	0	1725				SLC7A11-AS1_ENST00000512786.1_RNA	NR_038380.1																						agttttaaccttttttttttt	0.413													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150511159	150511159	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:150511159delT	ENST00000511993.1	-	0	1113																											GCCAACTTAATTTTTTTTCAA	0.363													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150664641	150664641	+	RNA	DEL	A	A	-	rs34884957		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:150664641delA	ENST00000511993.1	-	0	330																											AGTCCTATACATTCCCAGTTA	0.338													4	5	---	---	---	---					
RP11-6C14.1	0	broad.mit.edu	37	4	160593899	160593901	+	RNA	DEL	TGA	TGA	-	rs145078768		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:160593899_160593901delTGA	ENST00000513718.1	-	0	202																											tttgggttggtgaacacaggaag	0.438													3	3	---	---	---	---					
RP11-161D15.3	0	broad.mit.edu	37	4	174907905	174907906	+	RNA	INS	-	-	AG	rs10665936	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:174907905_174907906insAG	ENST00000511291.1	-	0	145																											tgctccatgacggggacagatc	0.436													6	3	---	---	---	---					
RP11-130F10.1	0	broad.mit.edu	37	4	178469153	178469155	+	RNA	DEL	CTC	CTC	-	rs76761186		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr4:178469153_178469155delCTC	ENST00000507023.1	+	0	581																											ttctcctattctcctgtcagcag	0.453													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	7113993	7113994	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:7113993_7113994insT	ENST00000512838.1	+	0	154																											ACTGTATTTCCTTTTTTTTCtt	0.317													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	7179594	7179595	+	RNA	INS	-	-	ACA	rs139478142	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:7179594_7179595insACA	ENST00000512838.1	+	0	537																											AGTTCATTAGCACAAGTTGAGG	0.450													6	2	---	---	---	---					
LOC101929505	101929505	broad.mit.edu	37	5	16411708	16411709	+	RNA	INS	-	-	ACAG	rs147220797	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:16411708_16411709insACAG	ENST00000513157.1	-	0	1433																											cacacagacacacacacacaca	0.460													2	4	---	---	---	---					
RP11-124N3.3	0	broad.mit.edu	37	5	19030386	19030387	+	RNA	DEL	TG	TG	-	rs34933076		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:19030386_19030387delTG	ENST00000504827.1	-	0	289																											tccctgtgtctgtgcccgctag	0.525													4	4	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21539903	21539903	+	RNA	DEL	A	A	-	rs5866503		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:21539903delA	ENST00000607545.1	+	0	314					NR_027026.1																						ttctcacagcaaaaaaagata	0.294													5	1	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21558318	21558322	+	RNA	DEL	GTTTA	GTTTA	-	rs2354609		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:21558318_21558322delGTTTA	ENST00000607545.1	+	0	314					NR_027026.1																						TCCGTTGGTTGTTTAGTTTATTCCT	0.346													2	4	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21559451	21559452	+	RNA	DEL	TG	TG	-	rs3056572		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:21559451_21559452delTG	ENST00000607545.1	+	0	314					NR_027026.1																						GTTGAAAAACTGTGCTTATGTA	0.426													4	8	---	---	---	---					
CTD-2194L12.2	0	broad.mit.edu	37	5	37918597	37918598	+	RNA	INS	-	-	AC	rs80093700	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:37918597_37918598insAC	ENST00000513673.1	-	0	234																											aacttaaaatTacacacacaca	0.426													5	6	---	---	---	---					
CTD-2116N24.1	0	broad.mit.edu	37	5	38030627	38030628	+	RNA	DEL	TG	TG	-	rs10588866		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:38030627_38030628delTG	ENST00000513039.2	+	0	233																											tgtgtgtgtctgtgtgtgtgtg	0.356													4	3	---	---	---	---					
LINC01331	104310351	broad.mit.edu	37	5	73673598	73673600	+	RNA	DEL	ATG	ATG	-	rs78562380		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:73673598_73673600delATG	ENST00000507781.1	-	0	422																											TGAAGTAAACATGATTATTTTCT	0.296													3	5	---	---	---	---					
TMEM161B-AS1	100505894	broad.mit.edu	37	5	87650602	87650605	+	RNA	DEL	CTAA	CTAA	-	rs59289420		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:87650602_87650605delCTAA	ENST00000501715.2	+	0	577				TMEM161B-AS1_ENST00000504922.1_RNA|TMEM161B-AS1_ENST00000510087.1_RNA|TMEM161B-AS1_ENST00000501869.2_RNA																							ttttcttctgctaactcttacctg	0.377													2	4	---	---	---	---					
MEF2C-AS1	101929423	broad.mit.edu	37	5	88270485	88270486	+	RNA	INS	-	-	A	rs33986149	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:88270485_88270486insA	ENST00000511100.1	+	0	292				MEF2C-AS1_ENST00000514571.1_RNA|MEF2C-AS1_ENST00000512585.1_RNA|MEF2C-AS1_ENST00000514092.1_RNA|MEF2C-AS1_ENST00000508521.1_RNA																							ttactcaatccaaaatgttttt	0.381													3	3	---	---	---	---					
NR2F1-AS1	441094	broad.mit.edu	37	5	92767086	92767086	+	RNA	DEL	G	G	-	rs140248121	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:92767086delG	ENST00000607797.1	-	0	1229				NR2F1-AS1_ENST00000607831.1_RNA|NR2F1-AS1_ENST00000606188.1_RNA|NR2F1-AS1_ENST00000606233.1_RNA|NR2F1-AS1_ENST00000606739.1_RNA|NR2F1-AS1_ENST00000510254.1_RNA	NR_015369.1																						GAAAATAGACGGATTTGTGTT	0.388													2	4	---	---	---	---					
STARD4-AS1	100505678	broad.mit.edu	37	5	110906295	110906296	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:110906295_110906296insC	ENST00000500779.2	+	0	283					NR_040093.1																						atcccccaactccccccacaac	0.381													2	4	---	---	---	---					
LINC01170	103724389	broad.mit.edu	37	5	123708234	123708235	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:123708234_123708235insT	ENST00000519703.1	-	0	171																											TGGACAACGTGTTTTTTTCAGG	0.495													2	4	---	---	---	---					
CTB-1I21.1	0	broad.mit.edu	37	5	136071159	136071160	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:136071159_136071160insA	ENST00000502421.1	+	0	79																											TTCTCTATCACAAAAAAACTGA	0.406													3	4	---	---	---	---					
RP11-381K20.2	0	broad.mit.edu	37	5	137181247	137181248	+	RNA	INS	-	-	AGA	rs10680705	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:137181247_137181248insAGA	ENST00000514616.1	-	0	562																											actatcctgtgagctcaagcca	0.465													4	5	---	---	---	---					
KDM3B	51780	broad.mit.edu	37	5	137765963	137765964	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:137765963_137765964insC	ENST00000314358.5	+	22	5119_5120	c.4919_4920insC	c.(4918-4920)accfs	p.T1640fs	KDM3B_ENST00000542866.1_Frame_Shift_Ins_p.T672fs|KDM3B_ENST00000394866.1_Frame_Shift_Ins_p.T1296fs	NM_016604.3	NP_057688.2	Q7LBC6	KDM3B_HUMAN	lysine (K)-specific demethylase 3B	1640	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(4)|large_intestine(15)|liver(2)|lung(18)|ovary(4)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	65						ggccaagagaacCCCCCTGATC	0.455													7	50	---	---	---	---					
LOC101926941	101926941	broad.mit.edu	37	5	141847360	141847360	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:141847360delA	ENST00000443800.1	+	0	243				AC005592.2_ENST00000425963.1_RNA																							tagttgcaggaaaacaagctc	0.383													2	4	---	---	---	---					
LOC101927766	101927766	broad.mit.edu	37	5	159285637	159285638	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:159285637_159285638insA	ENST00000522627.1	-	0	3691																											CTGGCCTGGGGCTCAGACCTAG	0.545													2	4	---	---	---	---					
RP11-541P9.3	0	broad.mit.edu	37	5	162484082	162484082	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr5:162484082delT	ENST00000509211.1	-	0	219				RP11-541P9.3_ENST00000458002.2_RNA																							CGGAAGGTGATTTTTTTTTAA	0.368													2	4	---	---	---	---					
LY86-AS1	285780	broad.mit.edu	37	6	6427834	6427834	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:6427834delC	ENST00000435641.1	-	0	639				LY86-AS1_ENST00000429345.1_RNA|LY86-AS1_ENST00000447858.1_RNA																							aagtccaggaccagatggatt	0.448													2	4	---	---	---	---					
LOC101928354	101928354	broad.mit.edu	37	6	14598557	14598559	+	RNA	DEL	TTG	TTG	-	rs67114474		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:14598557_14598559delTTG	ENST00000414740.2	-	0	60																											TGGTAATTTTTTGTTGTTGTTGT	0.379													3	6	---	---	---	---					
RP3-404K8.2	0	broad.mit.edu	37	6	22311936	22311936	+	RNA	DEL	T	T	-	rs79902807		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:22311936delT	ENST00000561912.1	+	0	205																											ctcctctgcctttttttttcc	0.378													2	4	---	---	---	---					
ZNRD1-AS1	80862	broad.mit.edu	37	6	29998107	29998107	+	RNA	DEL	T	T	-	rs11427903		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:29998107delT	ENST00000444051.1	-	0	108				ZNRD1-AS1_ENST00000437417.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000376797.3_RNA	NR_103542.1																						cagcgtgtagtttttttgttg	0.328													5	2	---	---	---	---					
ZNRD1-AS1	80862	broad.mit.edu	37	6	30019566	30019567	+	RNA	INS	-	-	AC	rs28776219	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:30019566_30019567insAC	ENST00000376797.3	-	0	259				ZNRD1-AS1_ENST00000422224.1_RNA|ZNRD1-AS1_ENST00000437417.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000421692.1_RNA																							cacacccacaaacacacacaca	0.455													3	3	---	---	---	---					
LOC101929705	101929705	broad.mit.edu	37	6	44012399	44012400	+	RNA	DEL	AA	AA	-	rs144698796	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:44012399_44012400delAA	ENST00000422059.1	-	0	156																											acccacacacaaacattcatat	0.411													2	4	---	---	---	---					
LOC101928516	101928516	broad.mit.edu	37	6	75133859	75133860	+	RNA	INS	-	-	A	rs148265782	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:75133859_75133860insA	ENST00000435946.1	+	0	193																											aaaacaaccagaaaaaaaaatt	0.371													7	3	---	---	---	---					
RP11-554D15.3	0	broad.mit.edu	37	6	75443100	75443101	+	RNA	DEL	AC	AC	-	rs10535727		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:75443100_75443101delAC	ENST00000432484.2	-	0	199																											ACCATTTCAAacacacacacac	0.312													2	4	---	---	---	---					
RP11-459O1.2	0	broad.mit.edu	37	6	89018036	89018037	+	RNA	DEL	TG	TG	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:89018036_89018037delTG	ENST00000429137.1	-	0	236																											gctatatctttgtgtgtgtgtg	0.416													2	4	---	---	---	---					
RP11-459O1.2	0	broad.mit.edu	37	6	89055197	89055198	+	RNA	DEL	TG	TG	-	rs71636488		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:89055197_89055198delTG	ENST00000429137.1	-	0	90																											ttgctagagttgtgtgtgtgtg	0.317													4	4	---	---	---	---					
RP11-436D23.1	0	broad.mit.edu	37	6	98670157	98670158	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:98670157_98670158insA	ENST00000607823.1	+	0	352																											gaatcagtaataaaaaaaaaac	0.351													2	4	---	---	---	---					
LOC101927768	101927768	broad.mit.edu	37	6	114683128	114683151	+	RNA	DEL	TCCTTCCTTCCTTCCTTCCTTCCT	TCCTTCCTTCCTTCCTTCCTTCCT	-	rs60180856		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:114683128_114683151delTCCTTCCTTCCTTCCTTCCTTCCT	ENST00000518470.1	+	0	291																											tctttctttctccttccttccttccttccttccttccttccttc	0.446													3	4	---	---	---	---					
LOC101927768	101927768	broad.mit.edu	37	6	114714429	114714430	+	RNA	INS	-	-	C	rs112089987		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:114714429_114714430insC	ENST00000518470.1	+	0	392																											TCCCTTGATTTTTTTTTTTTTT	0.366													3	3	---	---	---	---					
TARID	100507308	broad.mit.edu	37	6	134051646	134051646	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:134051646delA	ENST00000607033.1	-	0	623				RP3-323P13.2_ENST00000606544.1_RNA|RP3-323P13.2_ENST00000607573.1_RNA|RP3-323P13.2_ENST00000606292.1_RNA																							taaggaaaccaaaaaagaggg	0.378													2	4	---	---	---	---					
STXBP5-AS1	729178	broad.mit.edu	37	6	147394681	147394682	+	RNA	DEL	AC	AC	-	rs113009806		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:147394681_147394682delAC	ENST00000367477.3	-	0	566				STXBP5-AS1_ENST00000427394.1_RNA|STXBP5-AS1_ENST00000431143.1_RNA|STXBP5-AS1_ENST00000458125.1_RNA|STXBP5-AS1_ENST00000447072.1_RNA																							acacacacctacacacacacac	0.470													2	4	---	---	---	---					
RP1-230L10.1	0	broad.mit.edu	37	6	164176174	164176174	+	RNA	DEL	T	T	-	rs146036852		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:164176174delT	ENST00000452944.1	+	0	102																											ttgctacacgtttttttttaa	0.473													2	4	---	---	---	---					
LINC00473	90632	broad.mit.edu	37	6	166401465	166401466	+	RNA	DEL	GT	GT	-	rs71733419		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr6:166401465_166401466delGT	ENST00000584911.1	-	0	70_71																											gtgtgcgtgcgtgtgtgtgtgt	0.550													3	3	---	---	---	---					
AC007091.1	0	broad.mit.edu	37	7	19441696	19441697	+	RNA	DEL	TT	TT	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:19441696_19441697delTT	ENST00000412563.1	+	0	254																											TACTGACACATTTTTAAAGTTC	0.262													2	4	---	---	---	---					
ZMIZ2	83637	broad.mit.edu	37	7	44796991	44796992	+	Frame_Shift_Ins	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:44796991_44796992insA	ENST00000309315.4	+	5	506_507	c.383_384insA	c.(382-384)cggfs	p.R128fs	ZMIZ2_ENST00000441627.1_Frame_Shift_Ins_p.R128fs|ZMIZ2_ENST00000433667.1_Frame_Shift_Ins_p.R96fs|ZMIZ2_ENST00000413916.1_Frame_Shift_Ins_p.R96fs|ZMIZ2_ENST00000265346.7_Frame_Shift_Ins_p.R128fs	NM_031449.3	NP_113637.3	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2	128	Gly-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			breast(3)|endometrium(2)|kidney(3)|large_intestine(6)|lung(10)|ovary(6)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	35						GCAGGCGGCCCGGGGGGCCTGG	0.673													2	4	---	---	---	---					
LINC00972	100505913	broad.mit.edu	37	7	85075588	85075588	+	RNA	DEL	A	A	-	rs112636721		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:85075588delA	ENST00000438065.1	+	0	137																											ttcttccaagaaaaaaaaaat	0.323													2	4	---	---	---	---					
STEAP2-AS1	100874100	broad.mit.edu	37	7	89608891	89608892	+	RNA	DEL	TT	TT	-	rs66895503		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:89608891_89608892delTT	ENST00000478318.2	-	0	424																											attttttccctttttttttttt	0.356													2	4	---	---	---	---					
LINC01510	100996266	broad.mit.edu	37	7	116248995	116248995	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr7:116248995delA	ENST00000458082.1	-	0	222																											tagcattaggagaaataccta	0.498													2	4	---	---	---	---					
TDH	157739	broad.mit.edu	37	8	11217834	11217837	+	RNA	DEL	ACAT	ACAT	-	rs36213110		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:11217834_11217837delACAT	ENST00000534302.1	+	0	472																											acgcacacacacatacacatacac	0.466													5	10	---	---	---	---					
NEFM	4741	broad.mit.edu	37	8	24775959	24775960	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:24775959_24775960insG	ENST00000221166.5	+	3	3373_3374	c.2591_2592insG	c.(2590-2592)gggfs	p.G864fs	NEFM_ENST00000518131.1_Frame_Shift_Ins_p.G646fs|NEFM_ENST00000437366.2_Frame_Shift_Ins_p.G825fs|NEFM_ENST00000521540.1_3'UTR|NEFM_ENST00000433454.2_Frame_Shift_Ins_p.G488fs			P07197	NFM_HUMAN	neurofilament, medium polypeptide	864	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(3)|endometrium(7)|kidney(4)|large_intestine(5)|lung(14)|ovary(1)|prostate(1)|urinary_tract(1)	36		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		ATCACCAGTGAGGGGGGAGATG	0.450													7	237	---	---	---	---					
RP1-84O15.2	0	broad.mit.edu	37	8	34127749	34127749	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:34127749delA	ENST00000522460.1	+	0	202																											GACAAGAGACAAAAAAAAAAA	0.368													2	4	---	---	---	---					
RP1-84O15.2	0	broad.mit.edu	37	8	34172807	34172810	+	RNA	DEL	TCAT	TCAT	-	rs148162138		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:34172807_34172810delTCAT	ENST00000522460.1	+	0	282																											attcactcactcattcattcattc	0.426													3	5	---	---	---	---					
LINC01288	103689844	broad.mit.edu	37	8	34692572	34692572	+	RNA	DEL	A	A	-	rs79451244		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:34692572delA	ENST00000519189.1	+	0	387																											gaccctgtctaaaaaaaaaaa	0.368													2	4	---	---	---	---					
RP11-89M20.2	0	broad.mit.edu	37	8	35898597	35898597	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:35898597delT	ENST00000523342.1	-	0	32																											AAGAGAACACTTTTTTTTTTT	0.408													2	4	---	---	---	---					
RP11-388G22.1	0	broad.mit.edu	37	8	58690620	58690621	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:58690620_58690621insG	ENST00000520426.1	-	0	273																											agcatctgggaggggggctgta	0.550													2	4	---	---	---	---					
RP11-573J24.1	0	broad.mit.edu	37	8	64500772	64500772	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:64500772delT	ENST00000523265.1	+	0	144																											agggttcccattttccacatc	0.313													2	4	---	---	---	---					
LINC01592	100505718	broad.mit.edu	37	8	69885231	69885232	+	RNA	DEL	TA	TA	-	rs35698905		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:69885231_69885232delTA	ENST00000518540.1	-	0	415					NR_039986.1																						gacttgcacgtatatatatata	0.421													4	3	---	---	---	---					
LOC101926926	101926926	broad.mit.edu	37	8	74252638	74252639	+	RNA	INS	-	-	AGAA	rs61143323	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:74252638_74252639insAGAA	ENST00000514599.1	-	0	381				RP11-434I12.2_ENST00000517475.1_RNA																							aagaaagagagagaaaataaag	0.386													6	5	---	---	---	---					
RNU6-1300P	0	broad.mit.edu	37	8	74961015	74961016	+	RNA	INS	-	-	GAAG	rs145966856	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:74961015_74961016insGAAG	ENST00000391046.1	+	0	104_105																											gtggtccatatgaaggaaggaa	0.391													3	3	---	---	---	---					
RP11-120I21.2	0	broad.mit.edu	37	8	84950519	84950520	+	RNA	INS	-	-	TG	rs59713128	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:84950519_84950520insTG	ENST00000523678.1	+	0	123																											CTTTTTGGGTTtgtgtgtgtgt	0.307													3	3	---	---	---	---					
AF121898.3	0	broad.mit.edu	37	8	88673621	88673622	+	RNA	INS	-	-	TG	rs10657794		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:88673621_88673622insTG	ENST00000517711.1	-	0	69				AF121898.3_ENST00000440763.2_RNA|AF121898.3_ENST00000518494.1_RNA																							gtctctgtctctctctctctct	0.460													3	4	---	---	---	---					
LINC00534	100874052	broad.mit.edu	37	8	91305177	91305177	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:91305177delC	ENST00000523406.1	+	0	300					NR_051989.1																						tatctaactgcttttaattgt	0.358													3	3	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92665504	92665504	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:92665504delA	ENST00000518416.1	-	0	415																											TGGGTCTTCGAAAAAAAAGGG	0.398													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94520897	94520910	+	RNA	DEL	CACACACACACACA	CACACACACACACA	-	rs71908130	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:94520897_94520910delCACACACACACACA	ENST00000501400.1	-	0	1133					NR_033858.1																						ctctctctctcacacacacacacacacacacaca	0.463													2	4	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96457086	96457089	+	RNA	DEL	AAAC	AAAC	-	rs34956127		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:96457086_96457089delAAAC	ENST00000521905.1	+	0	281																											tccgtctcaaaaacaaacaaacaa	0.456													3	6	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96531274	96531275	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:96531274_96531275insG	ENST00000519366.1	+	0	268				KB-1047C11.2_ENST00000521905.1_lincRNA																							CTAAAAGTGGCGGGGGGCGGCG	0.485											OREG0018875	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
KB-173C10.2	0	broad.mit.edu	37	8	101402634	101402634	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:101402634delA	ENST00000519844.1	-	0	132																											AGAATGAATTAATGACTTCCT	0.294													2	4	---	---	---	---					
RP11-238I10.1	0	broad.mit.edu	37	8	111633081	111633081	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:111633081delA	ENST00000523264.1	+	0	66																											actccgtctcaaaaaaaaaaa	0.433													2	4	---	---	---	---					
LINC00536	100859921	broad.mit.edu	37	8	117178649	117178650	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:117178649_117178650insA	ENST00000505156.2	-	0	1333					NR_046215.1																						TTCCAAATCCTAAAAAAAAAAA	0.327													2	4	---	---	---	---					
LOC101927822	101927822	broad.mit.edu	37	8	134901152	134901153	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:134901152_134901153insT	ENST00000520149.2	+	0	45																											CACTGAAAAAATGGTACTGAGA	0.391													2	4	---	---	---	---					
RP11-149P24.1	0	broad.mit.edu	37	8	137165169	137165170	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr8:137165169_137165170insA	ENST00000523150.1	+	0	330																											CTGTGTTAACCAAAAAACCAAT	0.386													2	4	---	---	---	---					
LOC101928438	101928438	broad.mit.edu	37	9	102469732	102469732	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr9:102469732delT	ENST00000427039.1	-	0	319																											ACATGCACCATGGTTCTCATA	0.408													4	4	---	---	---	---					
RP11-281A20.2	0	broad.mit.edu	37	9	120595397	120595398	+	RNA	DEL	AT	AT	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr9:120595397_120595398delAT	ENST00000421509.2	+	0	121																											ccccaaaaccatatatatttct	0.371													2	4	---	---	---	---					
LOC101926942	101926942	broad.mit.edu	37	10	92214528	92214529	+	RNA	INS	-	-	T	rs144723043	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr10:92214528_92214529insT	ENST00000422206.1	+	0	146				RP11-15K3.1_ENST00000418379.1_lincRNA																							ttttctctttcgtttagctcat	0.411													3	5	---	---	---	---					
LOC101926942	101926942	broad.mit.edu	37	10	92299813	92299813	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr10:92299813delC	ENST00000418379.1	-	0	74																											taccctaattccaggaacatg	0.363													2	4	---	---	---	---					
LBX1-AS1	399806	broad.mit.edu	37	10	103026692	103026693	+	RNA	INS	-	-	G	rs144186400	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr10:103026692_103026693insG	ENST00000434878.1	+	0	110																											CAGAGTTGGGAGGGGGTCCTAC	0.520													4	2	---	---	---	---					
LOC101927708	101927708	broad.mit.edu	37	11	3537377	3537378	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:3537377_3537378insC	ENST00000527970.1	-	0	285				RP13-726E6.1_ENST00000534291.1_lincRNA																							tttaggtgacaccccccctaca	0.579													2	4	---	---	---	---					
SNORD97	692223	broad.mit.edu	37	11	10810974	10810974	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:10810974delT	ENST00000532365.1	+	0	62					NR_004403.1																						aagttaaagcttaggcatcag	0.398													2	4	---	---	---	---					
RP11-396O20.1	0	broad.mit.edu	37	11	15702234	15702235	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:15702234_15702235insG	ENST00000532242.1	+	0	151																											tgaaggaatttgggggggtgtg	0.391													5	4	---	---	---	---					
BBOX1-AS1	103695435	broad.mit.edu	37	11	27208393	27208394	+	RNA	INS	-	-	C	rs149014722	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:27208393_27208394insC	ENST00000530430.1	-	0	564				RP11-1L12.3_ENST00000525302.1_RNA|RP11-1L12.3_ENST00000526061.1_RNA																							CACAGGCTTTACCCAAGGACTT	0.446													5	4	---	---	---	---					
AC027806.1	0	broad.mit.edu	37	11	39752409	39752410	+	RNA	INS	-	-	AC	rs111251834		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:39752409_39752410insAC	ENST00000408499.2	+	0	51_52																											tgtgtatatatacacacacaca	0.337													7	2	---	---	---	---					
RP11-124G5.3	0	broad.mit.edu	37	11	41557163	41557163	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:41557163delC	ENST00000526978.1	-	0	519																											TCCTCAGCCTCCAGTGAATTC	0.388													2	4	---	---	---	---					
LOC440040	440040	broad.mit.edu	37	11	49737673	49737673	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:49737673delA	ENST00000527477.1	+	0	1062																											TAACTGCTTCAAATAGCTAGG	0.348													2	4	---	---	---	---					
AP000662.4	0	broad.mit.edu	37	11	57406698	57406699	+	RNA	DEL	TG	TG	-	rs72145922		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:57406698_57406699delTG	ENST00000530595.1	+	0	297																											GCTGAGAGTTtgtgtgtgtgtg	0.564													2	4	---	---	---	---					
LOC101928989	101928989	broad.mit.edu	37	11	81734369	81734372	+	RNA	DEL	CTAT	CTAT	-	rs34178391		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:81734369_81734372delCTAT	ENST00000500502.1	-	0	813																											TCTTGCCCTCCTATCTGTCTACTA	0.299													4	3	---	---	---	---					
LOC100506368	100506368	broad.mit.edu	37	11	86672218	86672219	+	RNA	INS	-	-	TAA	rs10665818	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:86672218_86672219insTAA	ENST00000499504.3	+	0	139					NR_038905.1																						AAGGCACTTTTTAATATTCTCA	0.342													4	5	---	---	---	---					
DISC1FP1	101929222	broad.mit.edu	37	11	90513622	90513623	+	RNA	DEL	CA	CA	-	rs112909359		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:90513622_90513623delCA	ENST00000562678.1	+	0	185																											Tacatgcacgcacacacacaca	0.342													3	3	---	---	---	---					
RP11-360K13.1	0	broad.mit.edu	37	11	96579051	96579051	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:96579051delG	ENST00000527528.1	+	0	435																											agacttagttgggggatatta	0.333													2	4	---	---	---	---					
USP2-AS1	100499227	broad.mit.edu	37	11	119304493	119304493	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:119304493delT	ENST00000498979.2	+	0	273				USP2-AS1_ENST00000500970.1_RNA|USP2-AS1_ENST00000530002.1_RNA|USP2-AS1_ENST00000578923.1_RNA	NR_034160.1																						ATTTTATTTGTTTTTTTTTTA	0.348													3	5	---	---	---	---					
RP11-820L6.1	0	broad.mit.edu	37	11	122120757	122120758	+	RNA	INS	-	-	A	rs620758		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr11:122120757_122120758insA	ENST00000527474.1	-	0	898																											ACAGCCTCAAGAAAAAAAAAAA	0.347													2	4	---	---	---	---					
RP11-1038A11.3	0	broad.mit.edu	37	12	5462896	5462897	+	RNA	INS	-	-	AGGA			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:5462896_5462897insAGGA	ENST00000537192.1	+	0	219																											agaaagaaaagaggaaggaagg	0.406													3	3	---	---	---	---					
RP11-871F6.3	0	broad.mit.edu	37	12	17724564	17724564	+	RNA	DEL	C	C	-	rs35690356		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:17724564delC	ENST00000540399.1	-	0	763																											aaaaacagtgcaaaaaacata	0.249													6	0	---	---	---	---					
RP11-606D9.1	0	broad.mit.edu	37	12	17752946	17752949	+	RNA	DEL	TGTA	TGTA	-	rs113134577		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:17752946_17752949delTGTA	ENST00000539105.1	+	0	127																											tctatacctttgtatgtatgtatg	0.377													3	3	---	---	---	---					
RP11-1060J15.4	0	broad.mit.edu	37	12	27856258	27856259	+	RNA	INS	-	-	AACAAC	rs61048994	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:27856258_27856259insAACAAC	ENST00000536317.1	-	0	519				RP11-1060J15.4_ENST00000542660.1_RNA|RP11-1060J15.4_ENST00000536922.1_RNA																							ctccatctcaaaacaacaacaa	0.441													3	3	---	---	---	---					
RP11-630C16.2	0	broad.mit.edu	37	12	42275059	42275063	+	RNA	DEL	TTGTT	TTGTT	-	rs67373488		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:42275059_42275063delTTGTT	ENST00000550874.1	-	0	471																											gtttttgttgttgttttgttttgtt	0.415													2	4	---	---	---	---					
LOC102724050	102724050	broad.mit.edu	37	12	54821800	54821809	+	RNA	DEL	TGAAGGCTGC	TGAAGGCTGC	-	rs78603604		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:54821800_54821809delTGAAGGCTGC	ENST00000550474.1	+	0	116				RP11-753H16.5_ENST00000552785.1_RNA																							GCCTCTGCCATGAAGGCTGCTGAGCTGGAA	0.562													2	4	---	---	---	---					
RP11-415I12.3	0	broad.mit.edu	37	12	64147267	64147268	+	RNA	INS	-	-	C	rs72284862	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:64147267_64147268insC	ENST00000509615.2	-	0	238																											taatcccaacatttgggaggcc	0.431													2	4	---	---	---	---					
RPS11P6	729258	broad.mit.edu	37	12	64618984	64618985	+	RNA	DEL	TG	TG	-	rs36067161		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:64618984_64618985delTG	ENST00000535684.1	+	0	207																											caaaAGAAACTGTTTAAtttta	0.332													5	2	---	---	---	---					
FLJ41278	400046	broad.mit.edu	37	12	65370487	65370487	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:65370487delT	ENST00000535058.1	+	0	2731				RP11-766N7.4_ENST00000510459.2_lincRNA	NR_033988.1																						CTGATGGCGCTTTTTTTTTTT	0.328													2	4	---	---	---	---					
RP11-123O10.4	0	broad.mit.edu	37	12	67286963	67286963	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:67286963delT	ENST00000535721.1	-	0	113																											tggaattggctttttttttca	0.318													2	4	---	---	---	---					
LINC01481	101928062	broad.mit.edu	37	12	70460874	70460874	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:70460874delT	ENST00000549419.1	-	0	144																											tggggctgaatgggaggtttt	0.463													2	4	---	---	---	---					
RP11-560G2.1	0	broad.mit.edu	37	12	75665527	75665527	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:75665527delA	ENST00000549953.1	+	0	398																											ctgatctttgaaagcaggaag	0.522													2	4	---	---	---	---					
RP11-114H23.1	0	broad.mit.edu	37	12	76296934	76296935	+	RNA	INS	-	-	TG	rs139965162	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:76296934_76296935insTG	ENST00000552856.1	-	0	295																											ACAtgtgtacatgtgtgtgtct	0.421													5	2	---	---	---	---					
RP4-601P9.2	0	broad.mit.edu	37	12	115177970	115177971	+	RNA	INS	-	-	A	rs72296064		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:115177970_115177971insA	ENST00000551875.1	+	0	541																											gactctgtctcaaaaaaaaaaa	0.540													3	3	---	---	---	---					
RP11-1028N23.4	0	broad.mit.edu	37	12	116044159	116044160	+	RNA	DEL	GA	GA	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:116044159_116044160delGA	ENST00000551940.1	-	0	168																											gggggaaggggagagaggaggg	0.525													2	4	---	---	---	---					
RP11-143E21.6	0	broad.mit.edu	37	12	130739791	130739791	+	RNA	DEL	G	G	-	rs67883665		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr12:130739791delG	ENST00000563922.1	+	0	340																											TCCTTGGTTTGTTTTTTTTTT	0.433													2	4	---	---	---	---					
TEX26-AS1	100507064	broad.mit.edu	37	13	31477143	31477144	+	RNA	INS	-	-	T	rs35719190		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr13:31477143_31477144insT	ENST00000585870.1	-	0	1435				TEX26-AS1_ENST00000592950.1_RNA|TEX26-AS1_ENST00000590344.1_RNA|TEX26-AS1_ENST00000588726.1_RNA	NR_038287.1																						AAGGAAACGGAttttttttttt	0.401													2	4	---	---	---	---					
CPB2-AS1	100509894	broad.mit.edu	37	13	46680741	46680742	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr13:46680741_46680742insA	ENST00000415033.2	+	0	598																											ataatacaaacaaaaacgaacc	0.262													2	4	---	---	---	---					
RP11-248G5.8	0	broad.mit.edu	37	13	52786029	52786030	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr13:52786029_52786030insG	ENST00000451298.1	-	0	1229				RP11-64P12.8_ENST00000606031.1_RNA																							ctgtggtccctgggtcccTTGT	0.505													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	78587076	78587076	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr13:78587076delA	ENST00000607862.1	+	0	230				LINC00446_ENST00000414743.2_lincRNA																							CCTTGAAGCCAAAAAAGGTGA	0.338													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	78653830	78653831	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr13:78653830_78653831insT	ENST00000607862.1	+	0	230				RNF219-AS1_ENST00000605996.1_RNA|RNF219-AS1_ENST00000606187.1_RNA|RNF219-AS1_ENST00000444769.3_RNA|RNF219-AS1_ENST00000606376.1_RNA|RNF219-AS1_ENST00000606803.1_RNA|RNF219-AS1_ENST00000606429.1_RNA|RNF219-AS1_ENST00000607220.1_RNA|RNF219-AS1_ENST00000606124.1_RNA|RNF219-AS1_ENST00000607205.1_RNA|RNF219-AS1_ENST00000607860.1_RNA|RNF219-AS1_ENST00000430549.2_RNA|RNF219-AS1_ENST00000560209.2_RNA																							gctatcttttgttttttgatga	0.302													2	4	---	---	---	---					
CTD-2251F13.1	0	broad.mit.edu	37	14	30697906	30697906	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:30697906delG	ENST00000508469.2	-	0	69																											agtattgggtgggtggttctc	0.438													2	4	---	---	---	---					
LINC00639	283547	broad.mit.edu	37	14	39406488	39406489	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:39406488_39406489insA	ENST00000553932.1	-	0	96																											aacacaatcctaaaaaaaacca	0.337													2	4	---	---	---	---					
RP11-305B6.3	0	broad.mit.edu	37	14	44725917	44725918	+	RNA	DEL	CT	CT	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:44725917_44725918delCT	ENST00000553827.1	-	0	69																											ATTTGATGTGCTATTTGAATAT	0.282													2	4	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57385626	57385627	+	RNA	INS	-	-	AC			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:57385626_57385627insAC	ENST00000534909.2	+	0	474				OTX2-AS1_ENST00000554428.1_RNA|OTX2-AS1_ENST00000554725.1_RNA|OTX2-AS1_ENST00000554358.1_RNA	NR_029385.1																						TTTCAGTTTTTACACACACACA	0.406													2	4	---	---	---	---					
RP11-72M17.1	0	broad.mit.edu	37	14	66825779	66825780	+	RNA	DEL	TT	TT	-	rs35316838		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:66825779_66825780delTT	ENST00000556874.1	-	0	643																											AAGATGCGCCTTTTTTTTTTTT	0.361													2	4	---	---	---	---					
DIO2-AS1	100628307	broad.mit.edu	37	14	80786367	80786367	+	RNA	DEL	A	A	-	rs58352570		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:80786367delA	ENST00000553979.1	+	0	178					NR_038355.1																						agactgaaggaaaagaatggc	0.363													4	2	---	---	---	---					
LOC101928767	101928767	broad.mit.edu	37	14	86515843	86515844	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr14:86515843_86515844insT	ENST00000553346.1	-	0	404				CTD-2341M24.1_ENST00000553668.1_lincRNA																							CTTTAACCTTGTTTTTGTTTTC	0.356													2	4	---	---	---	---					
AC026495.1	0	broad.mit.edu	37	15	20563423	20563423	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:20563423delC	ENST00000581090.1	+	0	63																											cccttcctctcccttcctctc	0.672													3	4	---	---	---	---					
HERC2P3	283755	broad.mit.edu	37	15	20631659	20631659	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:20631659delT	ENST00000428453.1	-	0	4041																				central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(1)|lung(14)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	35						gaggtttcacttttttttccc	0.338													4	7	---	---	---	---					
SNHG14	104472715	broad.mit.edu	37	15	25549590	25549590	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:25549590delT	ENST00000554726.1	+	0	245				SNHG14_ENST00000452731.1_RNA																							TGTAcacgggttttttagggt	0.338													2	4	---	---	---	---					
RP11-184D12.1	0	broad.mit.edu	37	15	36376066	36376066	+	RNA	DEL	A	A	-	rs34329268		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:36376066delA	ENST00000561394.1	-	0	136																											caactgtctgaaaaaaaaaaa	0.403													3	3	---	---	---	---					
RP11-718O11.1	0	broad.mit.edu	37	15	46001509	46001510	+	RNA	INS	-	-	G	rs71682804	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:46001509_46001510insG	ENST00000560705.1	+	0	317																											CGAGAACCACCGGGGGGGggaa	0.530													2	4	---	---	---	---					
RP11-718O11.1	0	broad.mit.edu	37	15	46047344	46047345	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:46047344_46047345insT	ENST00000560705.1	+	0	317																											tggtcctggactttttttggtt	0.401													2	4	---	---	---	---					
RP11-718O11.1	0	broad.mit.edu	37	15	46113854	46113855	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:46113854_46113855insG	ENST00000560705.1	+	0	556																											gaccaccaggtgggggcagaga	0.535													2	4	---	---	---	---					
LINC01491	101928442	broad.mit.edu	37	15	48126862	48126862	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:48126862delC	ENST00000558434.1	-	0	119																											TGGTCTCTTTCCCCCTCCCGG	0.468													2	4	---	---	---	---					
RP11-507B12.1	0	broad.mit.edu	37	15	61940121	61940122	+	RNA	INS	-	-	TCT			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:61940121_61940122insTCT	ENST00000559590.1	-	0	57																											CAGAAGCATCATCTCAGTGGGA	0.465													2	4	---	---	---	---					
EWSAT1	283673	broad.mit.edu	37	15	69382824	69382825	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:69382824_69382825insG	ENST00000440444.1	+	0	515				RP11-809H16.5_ENST00000559870.1_lincRNA	NR_026949.1																						TCTCCCACACTGGGGAGGGGAG	0.530													2	4	---	---	---	---					
ANKRD34C-AS1	729911	broad.mit.edu	37	15	79513888	79513889	+	RNA	DEL	TG	TG	-	rs67553329		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:79513888_79513889delTG	ENST00000560533.1	-	0	349																											CCCCCCTGTCTGTGGTACCCTC	0.584													7	0	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81829408	81829408	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:81829408delT	ENST00000559211.1	+	0	98																											aatctaagagtttttggcttt	0.318													2	4	---	---	---	---					
RP11-648K4.2	0	broad.mit.edu	37	15	88075429	88075430	+	RNA	DEL	AA	AA	-	rs35975088		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:88075429_88075430delAA	ENST00000560439.1	-	0	157																											acagtcccctaaagtcttaact	0.460													5	3	---	---	---	---					
RP11-266O8.1	0	broad.mit.edu	37	15	94067430	94067431	+	RNA	DEL	TG	TG	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:94067430_94067431delTG	ENST00000543286.1	+	0	545																											ACACTCATGCTGTACATTTAGG	0.431													2	4	---	---	---	---					
LINC01579	283682	broad.mit.edu	37	15	94397390	94397390	+	RNA	DEL	G	G	-	rs35064540		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:94397390delG	ENST00000557481.2	-	0	430																											tacagcaaaagatgtggtcca	0.473													4	7	---	---	---	---					
CTD-2544M6.1	0	broad.mit.edu	37	15	98700348	98700348	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr15:98700348delA	ENST00000560360.1	-	0	291																											TTTTATGCCTAAACCTGAAGT	0.428													3	3	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5538752	5538752	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:5538752delA	ENST00000569895.1	+	0	343																											ggaggattatagtgatgatgg	0.448													6	7	---	---	---	---					
RP11-418I22.2	0	broad.mit.edu	37	16	9584838	9584839	+	RNA	INS	-	-	T	rs138854705	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:9584838_9584839insT	ENST00000570038.1	+	0	356																											ATGGCAAGGCATTTTTGTTTTA	0.351													4	2	---	---	---	---					
U91319.1	0	broad.mit.edu	37	16	13417573	13417574	+	RNA	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:13417573_13417574insG	ENST00000571619.1	+	0	178																											tgtcgagcaaaggggggaagag	0.495													2	4	---	---	---	---					
CTA-481E9.4	0	broad.mit.edu	37	16	18090005	18090006	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:18090005_18090006insA	ENST00000567304.1	-	0	144																											AGAGGTTAGGCAAAAACCATTT	0.386													2	4	---	---	---	---					
HERC2P4	100289574	broad.mit.edu	37	16	32118178	32118178	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr16:32118178delG	ENST00000564145.1	-	0	456																											tgctctatttggactcttata	0.378													3	4	---	---	---	---					
EPN2	22905	broad.mit.edu	37	17	19237375	19237376	+	Frame_Shift_Ins	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr17:19237375_19237376insT	ENST00000314728.5	+	11	2218_2219	c.1734_1735insT	c.(1732-1737)tcttggfs	p.W579fs	EPN2_ENST00000395618.3_Frame_Shift_Ins_p.W294fs|EPN2_ENST00000347697.2_Frame_Shift_Ins_p.W522fs|EPN2_ENST00000395626.1_Intron|EPN2_ENST00000575595.1_Frame_Shift_Ins_p.W287fs|EPN2_ENST00000571254.1_Frame_Shift_Ins_p.W515fs|EPN2_ENST00000395620.2_Frame_Shift_Ins_p.W522fs	NM_014964.4	NP_055779.2	O95208	EPN2_HUMAN	epsin 2	579	3 X 3 AA repeats of N-P-F.|6 X 3 AA repeats of [DE]-P-W.				endocytosis		lipid binding			breast(2)|endometrium(1)|kidney(3)|large_intestine(4)|lung(5)|prostate(1)|skin(2)|urinary_tract(1)	19	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					CCAGCACATCCTTTGGGCCTGG	0.663													2	4	---	---	---	---					
RP11-605F20.1	0	broad.mit.edu	37	17	38964113	38964113	+	RNA	DEL	G	G	-	rs77885759		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr17:38964113delG	ENST00000582101.1	+	0	117																											gtttttttttgtgtgtgtgca	0.299													2	4	---	---	---	---					
RP11-429O1.1	0	broad.mit.edu	37	17	50509668	50509668	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr17:50509668delC	ENST00000572848.1	+	0	76																											ACACGGTTGTCCAAGATCAGA	0.383													2	4	---	---	---	---					
RP11-277J6.3	0	broad.mit.edu	37	17	71659100	71659100	+	RNA	DEL	A	A	-	rs112989761		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr17:71659100delA	ENST00000584916.1	-	0	24																											GAACAGGGGGAAAAATTACTC	0.423													3	3	---	---	---	---					
RP11-846C15.2	0	broad.mit.edu	37	18	42721296	42721297	+	RNA	INS	-	-	T	rs139789160	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr18:42721296_42721297insT	ENST00000589845.1	-	0	417																											ttgcttgcttgttttttttttg	0.277													4	3	---	---	---	---					
LOC100287225	100287225	broad.mit.edu	37	18	48940034	48940034	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr18:48940034delC	ENST00000578152.1	+	0	216					NR_040075.1																						tgaaaaggagcagatttctat	0.264													2	4	---	---	---	---					
LOC100287225	100287225	broad.mit.edu	37	18	48953605	48953605	+	RNA	DEL	C	C	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr18:48953605delC	ENST00000578152.1	+	0	216					NR_040075.1																						ccagaaactgcctttcctttt	0.373													2	4	---	---	---	---					
RP11-325K19.1	0	broad.mit.edu	37	18	58473841	58473841	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr18:58473841delA	ENST00000591869.1	-	0	91																											ATAGGGATATAAAAGCAAAGA	0.318													2	4	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	61788312	61788313	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr18:61788312_61788313insA	ENST00000589376.1	+	0	145				LINC00305_ENST00000323355.3_lincRNA	NR_033881.1																						CCCTCCAGTATAAAAATGGTAC	0.257													2	4	---	---	---	---					
RP11-526H11.1	0	broad.mit.edu	37	18	65772323	65772324	+	RNA	INS	-	-	AAAC	rs138828509	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr18:65772323_65772324insAAAC	ENST00000580057.1	+	0	40																											aaaacaaaacaaaacaaacaaa	0.416													4	3	---	---	---	---					
UHRF1	29128	broad.mit.edu	37	19	4911138	4911139	+	RNA	INS	-	-	C			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr19:4911138_4911139insC	ENST00000592666.1	+	0	729							Q96T88	UHRF1_HUMAN	ubiquitin-like with PHD and ring finger domains 1						cell cycle|cell proliferation|DNA repair|regulation of transcription from RNA polymerase II promoter	nucleus	acid-amino acid ligase activity|methyl-CpG binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(7)|prostate(1)|upper_aerodigestive_tract(2)	16				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0276)		CCCTCCCACCTCCCCCCCCAAC	0.604											OREG0025176	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	6	---	---	---	---					
C19orf70	125988	broad.mit.edu	37	19	5679653	5679654	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr19:5679653_5679654insG	ENST00000309324.4	-	2	559_560	c.150_151insC	c.(148-153)ccccatfs	p.H51fs	RPL36_ENST00000579649.1_Intron|C19orf70_ENST00000590389.1_Frame_Shift_Ins_p.H73fs|C19orf70_ENST00000585605.1_5'UTR|C19orf70_ENST00000587589.1_Frame_Shift_Ins_p.H51fs|C19orf70_ENST00000587950.1_Frame_Shift_Ins_p.H73fs	NM_205767.1	NP_991330.1	Q5XKP0	QIL1_HUMAN	chromosome 19 open reading frame 70	51							protein binding			endometrium(1)|lung(1)	2						TGGTACATGGCGGGGGGGACCA	0.663													2	4	---	---	---	---					
CTC-457E21.6	0	broad.mit.edu	37	19	22790093	22790093	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr19:22790093delG	ENST00000599738.1	+	0	334																											actgatgtgtgggggaactga	0.592													4	4	---	---	---	---					
LOC727993	727993	broad.mit.edu	37	20	1947664	1947664	+	RNA	DEL	A	A	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:1947664delA	ENST00000446562.1	+	0	1216																											ACAGTAGCTTAAAAAAAAAAC	0.333													2	4	---	---	---	---					
RP4-764O22.1	0	broad.mit.edu	37	20	7056102	7056103	+	RNA	INS	-	-	T	rs113115101		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:7056102_7056103insT	ENST00000425900.1	+	0	81																											cttaagtgttgttttttttagt	0.267													2	4	---	---	---	---					
KIZ-AS1	101929591	broad.mit.edu	37	20	21153238	21153239	+	RNA	INS	-	-	A			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:21153238_21153239insA	ENST00000591761.1	-	0	5051				PLK1S1_ENST00000457464.1_RNA																							gactctgtctcaaaaaaaaaaa	0.441													2	4	---	---	---	---					
NCOR1P1	149934	broad.mit.edu	37	20	26088917	26088919	+	RNA	DEL	ATT	ATT	-	rs76371026		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:26088917_26088919delATT	ENST00000478176.1	-	0	150					NR_003678.1																						GTTAATAAACATTATAGAAAAAA	0.276													3	6	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29595756	29595757	+	RNA	INS	-	-	T	rs1973439		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:29595756_29595757insT	ENST00000432067.1	-	0	74																											tgtggtggctcttgcctgtcat	0.540													5	11	---	---	---	---					
RP5-1121H13.4	0	broad.mit.edu	37	20	40637391	40637391	+	RNA	DEL	T	T	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:40637391delT	ENST00000431589.1	+	0	131																											caacattatgttttccagatt	0.289													2	4	---	---	---	---					
LINC01260	79015	broad.mit.edu	37	20	43298787	43298788	+	RNA	INS	-	-	A	rs148686947		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr20:43298787_43298788insA	ENST00000415889.2	-	0	211																											aaactgctgctaaaaaaaaaaa	0.426													2	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11039939	11039941	+	RNA	DEL	GTT	GTT	-	rs146620410		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr21:11039939_11039941delGTT	ENST00000470054.1	-	0	774									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGATATAATCGTTGTTCTTCATC	0.320													4	6	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11084479	11084479	+	RNA	DEL	A	A	-	rs112755619		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr21:11084479delA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGGGGGTCATAAAACCAGAAA	0.413													3	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11093095	11093095	+	RNA	DEL	A	A	-	rs145159759		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr21:11093095delA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTTACCATGCAAAAAAATATA	0.403													5	8	---	---	---	---					
AP001604.3	0	broad.mit.edu	37	21	28803690	28803692	+	RNA	DEL	GTT	GTT	-	rs72272281		TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr21:28803690_28803692delGTT	ENST00000420186.2	-	0	202																											tttggttttggttgttgttgctc	0.325													2	4	---	---	---	---					
RP1-293L6.1	0	broad.mit.edu	37	22	37112816	37112817	+	RNA	INS	-	-	C	rs5756314	by1000genomes	TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chr22:37112816_37112817insC	ENST00000430281.1	+	0	75																											AGTGCCTCCTAACCCCCACCCC	0.455													2	4	---	---	---	---					
ERAS	3266	broad.mit.edu	37	X	48688051	48688051	+	Frame_Shift_Del	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:48688051delG	ENST00000338270.1	+	1	769	c.518delG	c.(517-519)tgfs	p.W173fs		NM_181532.2	NP_853510.1	Q7Z444	RASE_HUMAN	ES cell expressed Ras	173					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			endometrium(2)|large_intestine(1)|lung(9)|prostate(1)|urinary_tract(1)	14						GCACACAGCTGGGGGGCCCAC	0.642													2	4	---	---	---	---					
RP11-308D16.4	0	broad.mit.edu	37	X	136000865	136000866	+	RNA	INS	-	-	T			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:136000865_136000866insT	ENST00000424306.1	+	0	386																											ggcgcccTGTGtttttttttga	0.545													2	4	---	---	---	---					
RP11-329E24.6	0	broad.mit.edu	37	X	151319966	151319966	+	RNA	DEL	G	G	-			TCGA-17-Z002-01A-01W-0746-08	TCGA-17-Z002-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e5efab-d978-4c8f-a01a-6a6e5d73b08c	29ea6b6f-a3c7-45a3-b98d-aac1f0a11e88	g.chrX:151319966delG	ENST00000453915.1	+	0	109																											TATCCCTTCTGGTAGTCTCCC	0.463													2	4	---	---	---	---					
