Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ARHGAP15	55843	broad.mit.edu	37	2	144194513	144194513	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:144194513T>C	ENST00000295095.6	+	8	772	c.605T>C	c.(604-606)cTg>cCg	p.L202P	RP11-570L15.2_ENST00000546678.1_RNA|AC096558.1_ENST00000549032.1_RNA|AC096558.1_ENST00000442794.1_RNA|AC096558.1_ENST00000550516.1_RNA	NM_018460.3	NP_060930.3	Q53QZ3	RHG15_HUMAN	Rho GTPase activating protein 15	202					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			endometrium(1)|kidney(5)|large_intestine(8)|liver(2)|lung(15)|ovary(1)|skin(2)	34				BRCA - Breast invasive adenocarcinoma(221;0.151)		TCAAGAAACCTGGAATTATTC	0.338000													7	22					0	0	0.335167	0	0
ZNF407	55628	broad.mit.edu	37	18	72344029	72344029	+	Nonsense_Mutation	SNP	A	A	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr18:72344029A>T	ENST00000299687.5	+	1	1054	c.1054A>T	c.(1054-1056)Aga>Tga	p.R352*	ZNF407_ENST00000582337.1_Nonsense_Mutation_p.R352*|ZNF407_ENST00000577538.1_Nonsense_Mutation_p.R352*|ZNF407_ENST00000309902.6_Nonsense_Mutation_p.R352*	NM_017757.2	NP_060227.2	Q9C0G0	ZN407_HUMAN	zinc finger protein 407	352					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|endometrium(6)|kidney(7)|large_intestine(21)|lung(23)|ovary(4)|prostate(3)|upper_aerodigestive_tract(2)	67		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GATGCCTTCCAGAAATACTTT	0.393000													27	32					0	0	0.693898	0	0
ABR	29	broad.mit.edu	37	17	995058	995058	+	Silent	SNP	G	G	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr17:995058G>C	ENST00000544583.2	-	4	839	c.240C>G	c.(238-240)acC>acG	p.T80T	ABR_ENST00000302538.5_Silent_p.T126T|ABR_ENST00000574437.1_Silent_p.T80T|ABR_ENST00000291107.2_Silent_p.T89T	NM_001159746.2	NP_001153218.1	Q12979	ABR_HUMAN	active BCR-related	126					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(6)|lung(12)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	39				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		CGGGCTGGGAGGTGGTGGCGG	0.567000													37	40					0	0	0.847076	0	0
RAB15	376267	broad.mit.edu	37	14	65417119	65417119	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:65417119C>T	ENST00000533601.2	-	5	675	c.338G>A	c.(337-339)gGc>gAc	p.G113D	CHURC1-FNTB_ENST00000542227.1_Intron|CHURC1-FNTB_ENST00000447296.2_Intron|RAB15_ENST00000436278.2_3'UTR|RAB15_ENST00000426039.3_Missense_Mutation_p.G67D|RAB15_ENST00000267512.5_Missense_Mutation_p.A157T			P59190	RAB15_HUMAN	RAB15, member RAS oncogene family	113					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			endometrium(1)|large_intestine(2)|lung(4)|ovary(1)	8				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		CTTCTGGACGCCTTCTGGTGC	0.562000													4	158					0	0	0.150653	0	0
MIR4485	100616263	broad.mit.edu	37	MT	2894	2894	+	RNA	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chrM:2894T>C	ENST00000387347.2	+	0	1224					NR_039705.1																						TACTATACTCAATTGATCCAA	0.453000													10	158					0	0	0.411799	0	0
VWC2	375567	broad.mit.edu	37	7	49951644	49951644	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:49951644G>A	ENST00000340652.3	+	4	1397	c.841G>A	c.(841-843)Gca>Aca	p.A281T	ZPBP_ENST00000491129.1_Intron	NM_198570.3	NP_940972.2	Q2TAL6	VWC2_HUMAN	von Willebrand factor C domain containing 2	281					negative regulation of BMP signaling pathway|positive regulation of neuron differentiation	basement membrane|extracellular space				cervix(1)|endometrium(2)|large_intestine(1)|lung(3)|prostate(1)	8						AAACTGCTTTGCAGAAACCGC	0.388000													27	53					0	0	0.667858	0	0
TIMELESS	8914	broad.mit.edu	37	12	56815964	56815964	+	Missense_Mutation	SNP	C	C	A	rs147134169		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:56815964C>A	ENST00000229201.4	-	20	2601	c.2447G>T	c.(2446-2448)cGc>cTc	p.R816L	TIMELESS_ENST00000554616.1_Intron|TIMELESS_ENST00000553532.1_Missense_Mutation_p.R817L	NM_003920.3	NP_003911.2	Q9UNS1	TIM_HUMAN	timeless circadian clock	817					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				NS(1)|breast(2)|cervix(3)|endometrium(3)|kidney(3)|large_intestine(8)|lung(14)|ovary(7)|pancreas(2)|prostate(3)|skin(1)|stomach(1)|urinary_tract(1)	49						AGGTGCTCTGCGACTGGAAGA	0.517000													3	114					0.150653	0.159345	0.150653	1	0
OR8K3	219473	broad.mit.edu	37	11	56085955	56085955	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:56085955C>T	ENST00000312711.1	+	1	173	c.173C>T	c.(172-174)cCt>cTt	p.P58L		NM_001005202.1	NP_001005202.1	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K, member 3	58					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(2)|endometrium(3)|large_intestine(6)|liver(2)|lung(15)|ovary(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(2)	40	Esophageal squamous(21;0.00448)					TTGCAAACCCCTATGTACTTT	0.398000													31	68					0	0	0.760397	0	0
TTC37	9652	broad.mit.edu	37	5	94834211	94834211	+	Silent	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:94834211T>C	ENST00000358746.2	-	33	3724	c.3426A>G	c.(3424-3426)aaA>aaG	p.K1142K		NM_014639.3	NP_055454.1	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1142							binding			breast(2)|endometrium(6)|kidney(3)|large_intestine(13)|liver(1)|lung(15)|ovary(4)|pancreas(1)|prostate(1)|skin(1)	47						TAAGTGCTGCTTTTGACAGTG	0.433000													18	19					0	0	0.520397	0	0
CROCCP2	84809	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	C	T	rs367060		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:16946434C>T	ENST00000412962.1	-	0	1085																											CTCAGCCTTCCGCCGGGCCAG	0.672000													5	20					0	0	0.217242	0	0
MTMR7	9108	broad.mit.edu	37	8	17218660	17218660	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:17218660T>C	ENST00000180173.5	-	4	468	c.434A>G	c.(433-435)tAc>tGc	p.Y145C	MTMR7_ENST00000521857.1_Missense_Mutation_p.Y145C	NM_004686.4	NP_004677.3	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	145	Myotubularin phosphatase.						protein tyrosine phosphatase activity			breast(1)|endometrium(5)|kidney(2)|large_intestine(5)|liver(1)|lung(8)|prostate(3)|skin(5)|stomach(1)|upper_aerodigestive_tract(1)	32				Colorectal(111;0.112)		GAGCTGCCAGTAATGATTAGG	0.478000													33	31					0	0	0.804634	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101599390	101599390	+	Silent	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:101599390T>C	ENST00000310954.6	-	4	1183	c.897A>G	c.(895-897)gaA>gaG	p.E299E		NM_180991.4	NP_851322.3	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family, member 4C1	299					cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(12)|lung(16)|ovary(1)|pancreas(1)|prostate(4)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(5)	50		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TGCCTTGCCTTTCTCCCATAG	0.368000													18	84					0	0	0.557998	0	0
KIAA1244	57221	broad.mit.edu	37	6	138599605	138599605	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr6:138599605G>A	ENST00000251691.4	+	13	2312	c.2146G>A	c.(2146-2148)Ggc>Agc	p.G716S		NM_020340.4	NP_065073.3	Q5TH69	BIG3_HUMAN	KIAA1244	716	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			NS(1)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(11)|lung(17)|ovary(2)|skin(2)	44	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GCACTCTCCTGGCTTTGACGG	0.562000													4	126					0	0	0.184627	0	0
CCR1	1230	broad.mit.edu	37	3	46245248	46245248	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:46245248T>C	ENST00000296140.3	-	2	682	c.557A>G	c.(556-558)cAc>cGc	p.H186R	CCR3_ENST00000357422.2_Intron	NM_001295.2	NP_001286.1	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	186					cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			autonomic_ganglia(1)|large_intestine(6)|lung(6)|pancreas(1)|skin(3)	17				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GTGAGGAAAGTGAAGGCTGCA	0.498000													55	92					0	0	0.870114	0	0
ZNF157	7712	broad.mit.edu	37	X	47271877	47271877	+	Silent	SNP	A	A	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chrX:47271877A>G	ENST00000377073.3	+	4	491	c.405A>G	c.(403-405)gaA>gaG	p.E135E		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	135					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						AAAATGTTGAATATAATGGAT	0.408000													3	42					0	0	0.115264	0	0
TUFM	7284	broad.mit.edu	37	16	28856763	28856763	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr16:28856763C>T	ENST00000313511.3	-	3	424	c.286G>A	c.(286-288)Gag>Aag	p.E96K		NM_003321.4	NP_003312.3	P49411	EFTU_HUMAN	Tu translation elongation factor, mitochondrial	93						mitochondrial nucleoid	GTP binding|GTPase activity|protein binding|translation elongation factor activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(4)|ovary(1)|prostate(1)	13						TCAATCTCCTCGTACTTCTTG	0.542000													4	62					0	0	0.150653	0	0
RYR2	6262	broad.mit.edu	37	1	237617717	237617717	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:237617717C>T	ENST00000366574.2	+	15	1636	c.1319C>T	c.(1318-1320)gCg>gTg	p.A440V	RYR2_ENST00000542537.1_Missense_Mutation_p.A424V|RYR2_ENST00000360064.6_Missense_Mutation_p.A438V	NM_001035.2	NP_001026.2	Q92736	RYR2_HUMAN	ryanodine receptor 2 (cardiac)	440					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			NS(4)|breast(8)|central_nervous_system(11)|cervix(2)|endometrium(39)|haematopoietic_and_lymphoid_tissue(5)|kidney(17)|large_intestine(83)|liver(4)|lung(353)|ovary(18)|pancreas(5)|prostate(12)|skin(8)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(4)	586	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCAAGAAAGCGAAGGCTTCC	0.403000													4	64					0	0	0.184627	0	0
KRT6A	3853	broad.mit.edu	37	12	52881586	52881586	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:52881586C>G	ENST00000330722.6	-	9	1681	c.1613G>C	c.(1612-1614)gGc>gCc	p.G538A		NM_005554.3	NP_005545.1	P02538	K2C6A_HUMAN	keratin 6A	538	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(7)|liver(1)|lung(14)|ovary(4)|prostate(1)|skin(1)|stomach(1)|urinary_tract(1)	39				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGAGCTGAGGCCACCCCCAAT	0.577000													3	115					0	0	0.335167	0	0
PDE4D	5144	broad.mit.edu	37	5	59064159	59064159	+	Silent	SNP	A	A	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:59064159A>T	ENST00000507116.1	-	1	312	c.177T>A	c.(175-177)tcT>tcA	p.S59S	PDE4D_ENST00000502484.2_Intron|PDE4D_ENST00000502575.1_Silent_p.S59S|PDE4D_ENST00000546160.1_Intron|PDE4D_ENST00000340635.6_Intron	NM_001197218.1	NP_001184147.1	Q08499	PDE4D_HUMAN	phosphodiesterase 4D, cAMP-specific	0	Pro-rich.				signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(8)|pancreas(1)	15		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	AATTTCTCGGAGAGATCACTG	0.517000													19	70					0	0	0.575678	0	0
THAP4	51078	broad.mit.edu	37	2	242572968	242572968	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:242572968C>T	ENST00000407315.1	-	2	1035	c.604G>A	c.(604-606)Gcc>Acc	p.A202T		NM_015963.5	NP_057047.4	Q8WY91	THAP4_HUMAN	THAP domain containing 4	202							DNA binding|metal ion binding			kidney(1)|large_intestine(3)|lung(2)|ovary(2)|prostate(1)	9		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		GAGGAAGTGGCGCTCTCATCG	0.567000													26	29					0	0	0.706142	0	0
RNF115	27246	broad.mit.edu	37	1	145611303	145611303	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:145611303T>C	ENST00000369291.4	+	1	268	c.64T>C	c.(64-66)Tgc>Cgc	p.C22R		NM_014455.2	NP_055270.1	Q9Y4L5	RN115_HUMAN	ring finger protein 115	22					protein autoubiquitination	cytosol	protein binding|ubiquitin-protein ligase activity|zinc ion binding			breast(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(2)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	13						CCGGTTTTTCTGCCACTTTTG	0.647000													4	6					0	0	0.217242	0	0
STAB2	55576	broad.mit.edu	37	12	104100638	104100638	+	Silent	SNP	C	C	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:104100638C>G	ENST00000388887.2	+	38	4269	c.4065C>G	c.(4063-4065)gtC>gtG	p.V1355V		NM_017564.9	NP_060034.9	Q8WWQ8	STAB2_HUMAN	stabilin 2	1355	Laminin EGF-like 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			NS(4)|breast(7)|central_nervous_system(1)|cervix(1)|endometrium(15)|kidney(11)|large_intestine(26)|lung(77)|ovary(10)|pancreas(1)|prostate(5)|skin(14)|stomach(2)	174						CCCAGAATGTCTGCTTTGGTA	0.572000													9	18					0	0	0.335167	0	0
KIAA1109	84162	broad.mit.edu	37	4	123192337	123192337	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:123192337A>G	ENST00000264501.4	+	47	8031	c.7658A>G	c.(7657-7659)cAc>cGc	p.H2553R	KIAA1109_ENST00000455637.1_Missense_Mutation_p.H2553R|KIAA1109_ENST00000388738.3_Missense_Mutation_p.H2553R			Q2LD37	K1109_HUMAN	KIAA1109	2553					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				breast(7)|central_nervous_system(1)|cervix(1)|endometrium(16)|kidney(6)|large_intestine(33)|liver(4)|lung(74)|ovary(9)|pancreas(1)|prostate(5)|skin(6)|upper_aerodigestive_tract(6)|urinary_tract(3)	172						AACACCTTTCACTGCAACTTT	0.408000													4	118					0	0	0.150653	0	0
SUZ12P1	440423	broad.mit.edu	37	17	29061941	29061941	+	RNA	SNP	T	T	C	rs112064181	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr17:29061941T>C	ENST00000582557.1	+	0	861																											TAGATTTCTTTGAACTCGGAA	0.303000													5	51					0	0	0.184627	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643082	1643082	+	Missense_Mutation	SNP	T	T	C	rs59610171		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:1643082T>C	ENST00000399682.1	-	1	286	c.242A>G	c.(241-243)tAt>tGt	p.Y81C		NM_001012709.1	NP_001012727.1	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	81	9 X 4 AA repeats of C-C-X-P.					keratin filament				NS(1)|endometrium(9)|kidney(2)|lung(2)|pancreas(1)|prostate(3)|skin(2)	20		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACAAGAGCCATAGCCCCCCTT	0.657000													4	57					0	0	0.335167	0	0
BMS1	9790	broad.mit.edu	37	10	43292900	43292900	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr10:43292900G>A	ENST00000374518.4	+	11	2081	c.2018G>A	c.(2017-2019)aGa>aAa	p.R673K		NM_014753.3	NP_055568.3	Q14692	BMS1_HUMAN	BMS1 ribosome biogenesis factor	673					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			NS(1)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(15)|lung(23)|ovary(2)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	62						GACCTTTCCAGAAAGGCAGCT	0.488000													5	211					0	0	0.217242	0	0
TM4SF20	79853	broad.mit.edu	37	2	228243870	228243870	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:228243870G>T	ENST00000304568.3	-	1	152	c.115C>A	c.(115-117)Caa>Aaa	p.Q39K		NM_024795.3	NP_079071.2	Q53R12	T4S20_HUMAN	transmembrane 4 L six family member 20	39						integral to membrane|plasma membrane				breast(1)|kidney(2)|large_intestine(1)|lung(4)|stomach(2)	10		Renal(207;0.025)|all_lung(227;0.123)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;3.8e-11)|all cancers(144;2.57e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		TGAGAAAATTGGTCTTCCTCA	0.433000													3	39					0.115264	0.124304	0.115264	1	0
MUC16	94025	broad.mit.edu	37	19	9018158	9018158	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr19:9018158A>G	ENST00000397910.4	-	25	37983	c.37780T>C	c.(37780-37782)Tct>Cct	p.S12594P		NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	12596	SEA 4.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						CTGCAGCCAGAGTACAGAAGG	0.537000													4	414					0	0	0.248553	0	0
SLIT2	9353	broad.mit.edu	37	4	20618585	20618585	+	Silent	SNP	C	C	T	rs141395818		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:20618585C>T	ENST00000504154.1	+	35	4152	c.3900C>T	c.(3898-3900)aaC>aaT	p.N1300N	SLIT2_ENST00000503837.1_Silent_p.N1296N|SLIT2_ENST00000503823.1_Silent_p.N1292N|SLIT2_ENST00000273739.5_Silent_p.N1313N	NM_004787.1	NP_004778.1	O94813	SLIT2_HUMAN	slit homolog 2 (Drosophila)	1300	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			NS(1)|breast(4)|central_nervous_system(4)|cervix(1)|endometrium(5)|kidney(7)|large_intestine(17)|lung(60)|ovary(3)|pancreas(1)|prostate(2)|skin(10)|upper_aerodigestive_tract(1)	116						CTGGGCAGAACGGAACCAGCT	0.582000													22	24					0	0	0.624587	0	0
SBF1	6305	broad.mit.edu	37	22	50904394	50904394	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr22:50904394C>T	ENST00000380817.2	-	9	1190	c.1007G>A	c.(1006-1008)aGc>aAc	p.S336N	SBF1_ENST00000390679.3_Missense_Mutation_p.S336N|SBF1_ENST00000348911.6_Missense_Mutation_p.S337N	NM_002972.2	NP_002963.2	O95248	MTMR5_HUMAN	SET binding factor 1	336					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity			breast(1)|central_nervous_system(2)|endometrium(6)|kidney(8)|large_intestine(3)|lung(18)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	43		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CCTCACCATGCTCAGCACACT	0.622000													23	34					0	0	0.624587	0	0
PCLO	27445	broad.mit.edu	37	7	82784289	82784289	+	Silent	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:82784289T>C	ENST00000423517.2	-	2	2005	c.1668A>G	c.(1666-1668)aaA>aaG	p.K556K	PCLO_ENST00000333891.8_Silent_p.K556K	NM_014510.2	NP_055325.2	Q9Y6V0	PCLO_HUMAN	piccolo presynaptic cytomatrix protein	502	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			breast(3)|central_nervous_system(3)|cervix(5)|endometrium(19)|haematopoietic_and_lymphoid_tissue(3)|kidney(19)|large_intestine(35)|lung(145)|ovary(7)|prostate(4)|upper_aerodigestive_tract(14)|urinary_tract(2)	259						GGCTTACTGGTTTTGTAGATT	0.527000													3	125					0	0	0.115264	0	0
MUSK	4593	broad.mit.edu	37	9	113445034	113445034	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:113445034T>C	ENST00000416899.2	+	2	286	c.160T>C	c.(160-162)Tac>Cac	p.Y54H	MUSK_ENST00000189978.5_Missense_Mutation_p.Y54H|MUSK_ENST00000374448.4_Missense_Mutation_p.Y54H|MUSK_ENST00000374440.3_5'UTR			O15146	MUSK_HUMAN	muscle, skeletal, receptor tyrosine kinase	54	Ig-like 1.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			breast(1)|central_nervous_system(1)|endometrium(7)|kidney(3)|large_intestine(7)|lung(23)|ovary(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)	49						AGTGGAATCCTACCCCCAGCC	0.383000													47	59					0	0	0.870114	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418903	105418903	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:105418903G>C	ENST00000333244.5	-	7	3004	c.2885C>G	c.(2884-2886)cCc>cGc	p.P962R	AHNAK2_ENST00000557457.1_Intron	NM_138420.2	NP_612429.2	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	962						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTCCATGCTGGGCAGAGACAC	0.637000													18	28					0	0	0.575678	0	0
MKI67	4288	broad.mit.edu	37	10	129904895	129904895	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr10:129904895A>C	ENST00000368654.3	-	13	5584	c.5209T>G	c.(5209-5211)Tac>Gac	p.Y1737D	MKI67_ENST00000368653.3_Missense_Mutation_p.Y1377D	NM_002417.4	NP_002408.3	P46013	KI67_HUMAN	marker of proliferation Ki-67	1737	16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			NS(2)|autonomic_ganglia(1)|breast(2)|central_nervous_system(2)|cervix(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(5)|kidney(7)|large_intestine(30)|lung(64)|ovary(4)|pancreas(1)|prostate(4)|skin(2)|soft_tissue(1)|stomach(10)|upper_aerodigestive_tract(4)|urinary_tract(4)	159		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GAAGCTCTGTAGGATACTTTG	0.483000													4	48					0	0	0.150653	0	0
C2CD5	9847	broad.mit.edu	37	12	22606881	22606881	+	Silent	SNP	G	G	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:22606881G>C	ENST00000333957.4	-	24	3075	c.2820C>G	c.(2818-2820)gtC>gtG	p.V940V	C2CD5_ENST00000396028.2_Silent_p.V982V|C2CD5_ENST00000542676.1_Silent_p.V991V|C2CD5_ENST00000545552.1_Silent_p.V994V|C2CD5_ENST00000544930.1_Silent_p.V796V|C2CD5_ENST00000446597.1_Silent_p.V991V|C2CD5_ENST00000536386.1_Silent_p.V993V	NM_014802.1	NP_055617.1			C2 calcium-dependent domain containing 5																		TTATGTAGGAGACAACAGCAT	0.413000													30	46					0	0	0.750413	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606210	1606210	+	Silent	SNP	G	G	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:1606210G>A	ENST00000382171.2	-	1	303	c.270C>T	c.(268-270)ggC>ggT	p.G90G	KRTAP5-AS1_ENST00000524947.1_RNA|KRTAP5-AS1_ENST00000534077.1_RNA|KRTAP5-AS1_ENST00000424148.1_RNA|KRTAP5-AS1_ENST00000532922.1_RNA	NM_001005922.1	NP_001005922.1	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	90	8 X 4 AA repeats of C-C-X-P.					keratin filament				endometrium(3)|kidney(1)|lung(9)|skin(2)|upper_aerodigestive_tract(1)	16		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCCCACAAGAGCCACAGCCCC	0.667000													4	34					0	0	0.217242	0	0
RAD54L2	23132	broad.mit.edu	37	3	51679626	51679626	+	Silent	SNP	A	A	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:51679626A>G	ENST00000409535.1	+	17	2801	c.2676A>G	c.(2674-2676)ctA>ctG	p.L892L	RAD54L2_ENST00000296477.3_Silent_p.L586L	NM_015106.2	NP_055921.2	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2 (S. cerevisiae)	892	Helicase C-terminal.					nucleus	ATP binding|DNA binding|helicase activity			NS(2)|breast(1)|cervix(2)|endometrium(4)|large_intestine(5)|liver(2)|lung(9)|ovary(4)|skin(2)	31				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TGGATGATCTAAATCCAATGC	0.423000													21	22					0	0	0.608945	0	0
PRKDC	5591	broad.mit.edu	37	8	48817536	48817536	+	Splice_Site	SNP	C	C	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:48817536C>A	ENST00000314191.2	-	26	2991	c.2934_splice	c.e26-1	p.V979_splice	PRKDC_ENST00000523565.1_5'UTR|PRKDC_ENST00000338368.3_Splice_Site_p.V979_splice	NM_006904.6	NP_008835.5	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic polypeptide	979					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			NS(1)|autonomic_ganglia(1)|breast(2)|central_nervous_system(9)|cervix(3)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(30)|lung(56)|ovary(6)|pancreas(1)|prostate(8)|skin(7)	147		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TGCCTTGTCACCTGAAGAAAC	0.358000								Non-homologous end-joining					6	57					0.00116845	0.00128529	0.217242	1	0
DNAH11	8701	broad.mit.edu	37	7	21912976	21912976	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:21912976G>T	ENST00000328843.6	+	75	12104	c.12073G>T	c.(12073-12075)Gtt>Ttt	p.V4025F	DNAH11_ENST00000409508.3_Missense_Mutation_p.V4018F			Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4025	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(1)|autonomic_ganglia(1)|breast(13)|central_nervous_system(3)|cervix(4)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(50)|lung(101)|ovary(10)|pancreas(4)|prostate(7)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	230						AGATTACAGGGTTTTCATGAG	0.458000									Kartagener syndrome				4	23					2.56e-06	2.93333e-06	0.150653	1	0
TRPV1	7442	broad.mit.edu	37	17	3475527	3475527	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr17:3475527A>C	ENST00000174621.6	-	13	2403	c.2114T>G	c.(2113-2115)cTg>cGg	p.L705R	TRPV1_ENST00000399759.3_Missense_Mutation_p.L707R|TRPV1_ENST00000310522.5_Missense_Mutation_p.L647R|TRPV1_ENST00000425167.2_Missense_Mutation_p.L718R|TRPV1_ENST00000571088.1_Missense_Mutation_p.L707R|SHPK_ENST00000572705.1_Missense_Mutation_p.L707R|TRPV1_ENST00000399756.4_Missense_Mutation_p.L707R|TRPV1_ENST00000576351.1_Missense_Mutation_p.L697R			Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel, subfamily V, member 1	707	AD (By similarity).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|prostate(1)|urinary_tract(1)	17				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	CTCCGTGTCCAGGATGGTGAT	0.622000													11	12					0	0	0.387290	0	0
CCDC113	29070	broad.mit.edu	37	16	58301478	58301478	+	Silent	SNP	A	A	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr16:58301478A>G	ENST00000219299.4	+	7	958	c.879A>G	c.(877-879)ctA>ctG	p.L293L	CCDC113_ENST00000443128.2_Silent_p.L239L	NM_014157.3	NP_054876.2	Q9H0I3	CC113_HUMAN	coiled-coil domain containing 113	293						protein complex				large_intestine(4)|lung(6)|ovary(1)|urinary_tract(1)	12						AAGAAACACTACAAGTAGAGG	0.403000													5	65					0	0	0.184627	0	0
PADI6	353238	broad.mit.edu	37	1	17723476	17723477	+	RNA	INS	-	-	CA	rs67024576	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:17723476_17723477insCA	ENST00000434762.2	+	0	1669							Q6TGC4	PADI6_HUMAN	peptidyl arginine deiminase, type VI						peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(9)|lung(9)|ovary(2)	29		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AGGAATGCACCCAGGTGGCTGG	0.629													6	5	---	---	---	---					
UBXN11	91544	broad.mit.edu	37	1	26608878	26608883	+	In_Frame_Del	DEL	CCGGGA	CCGGGA	-	rs1134580		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:26608878_26608883delCCGGGA	ENST00000314675.7	-	11	1189_1194	c.1110_1115delTCCCGG	c.(1108-1116)ggc>gg	p.GPG370del	UBXN11_ENST00000374217.2_In_Frame_Del_p.GPG457del|UBXN11_ENST00000357089.4_In_Frame_Del_p.GPG457del|UBXN11_ENST00000374222.1_In_Frame_Del_p.GPG490del|UBXN11_ENST00000374223.1_In_Frame_Del_p.GPG247del|UBXN11_ENST00000374221.3_In_Frame_Del_p.GPG490del	NM_001077262.1	NP_001070730.1	Q5T124	UBX11_HUMAN	UBX domain protein 11	490						cytoplasm|cytoskeleton		p.G490_P515delGPGPSPGPGPGPSPGPGPGPSPCPGP(1)		endometrium(3)|kidney(2)|large_intestine(4)|lung(6)|ovary(2)|prostate(3)|upper_aerodigestive_tract(3)	23						gggactggggccgggaccgggaccgg	0.718													21	37	---	---	---	---					
LOC101928460	101928460	broad.mit.edu	37	1	29667679	29667679	+	RNA	DEL	G	G	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:29667679delG	ENST00000417651.1	-	0	432																											ttttttttttgttttgttttg	0.438													2	4	---	---	---	---					
RP11-575B7.3	0	broad.mit.edu	37	1	60602717	60602717	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:60602717delT	ENST00000456878.1	+	0	99																											acttctggcatttttttggtc	0.313													2	4	---	---	---	---					
RP11-335E6.2	0	broad.mit.edu	37	1	63605516	63605516	+	RNA	DEL	C	C	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:63605516delC	ENST00000455038.1	+	0	248																											ccaaactcttcccCATGAAGC	0.448													2	4	---	---	---	---					
GNG12-AS1	100289178	broad.mit.edu	37	1	68552826	68552827	+	RNA	INS	-	-	A	rs111704385		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:68552826_68552827insA	ENST00000420587.1	+	0	325				GNG12-AS1_ENST00000413628.1_RNA	NR_040077.1		Q6ZVV5	Q6ZVV5_HUMAN																			gcacttaaAGTAAAAAAAAAAA	0.351													5	1	---	---	---	---					
RP4-651E10.4	0	broad.mit.edu	37	1	87099809	87099809	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:87099809delT	ENST00000456587.1	-	0	294																											GAAAGTATGATAAATGTGTTC	0.388													2	4	---	---	---	---					
RP4-543J13.1	0	broad.mit.edu	37	1	114764151	114764153	+	RNA	DEL	AAA	AAA	-	rs10564852		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:114764151_114764153delAAA	ENST00000420156.2	-	0	73																											taaaaataccaaaaaaaaaaaaa	0.473													2	4	---	---	---	---					
RP11-417J8.1	0	broad.mit.edu	37	1	142557049	142557049	+	RNA	DEL	G	G	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:142557049delG	ENST00000445662.1	+	0	204																											ACCTACTGGTGGGTGAGCATG	0.433													2	4	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142642817	142642818	+	RNA	INS	-	-	T	rs71249303		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:142642817_142642818insT	ENST00000369381.2	-	0	2507				RP11-417J8.3_ENST00000426408.1_lincRNA																							GTTTTCTTGGGTTTTTTTTTTT	0.342													7	4	---	---	---	---					
LINC00970	101978719	broad.mit.edu	37	1	168941795	168941798	+	RNA	DEL	AGAT	AGAT	-	rs71759007		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:168941795_168941798delAGAT	ENST00000366408.3	-	0	209																											agatatagacagatagatagatag	0.387													2	4	---	---	---	---					
RP11-400N13.1	0	broad.mit.edu	37	1	222524267	222524268	+	RNA	INS	-	-	C	rs113229543	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:222524267_222524268insC	ENST00000416510.1	-	0	167																											ttcaaaaattttttaaacaaat	0.317													2	4	---	---	---	---					
TMEM78	677790	broad.mit.edu	37	1	229385706	229385707	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:229385706_229385707delTC	ENST00000323223.2	+	1	324_325	c.265_266delTC	c.(265-267)tfs	p.S89fs						transmembrane protein 78																		tttctttctttctctctctctc	0.455													2	4	---	---	---	---					
LINC01341	149134	broad.mit.edu	37	1	246948627	246948628	+	RNA	DEL	CA	CA	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr1:246948627_246948628delCA	ENST00000421003.1	+	0	1439				RP11-439E19.3_ENST00000505748.1_RNA|RP11-439E19.8_ENST00000451123.1_RNA																							cacacacttgcacacacacaca	0.490													2	4	---	---	---	---					
LINC00486	285045	broad.mit.edu	37	2	33112433	33112433	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:33112433delA	ENST00000414054.1	+	0	289					NR_027098.1																						tctgtcagctaaaagggccta	0.363													2	4	---	---	---	---					
LOC442028	442028	broad.mit.edu	37	2	95563427	95563428	+	RNA	INS	-	-	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:95563427_95563428insC	ENST00000568768.1	-	0	476																											gggggtgtgcacccccccgtgg	0.465													2	4	---	---	---	---					
LOC102724691	102724691	broad.mit.edu	37	2	105630541	105630542	+	RNA	INS	-	-	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:105630541_105630542insT	ENST00000456519.1	-	0	43																											ctggtcctggattttttttctt	0.351													2	4	---	---	---	---					
LOC101929231	101929231	broad.mit.edu	37	2	150471773	150471773	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:150471773delT	ENST00000449714.1	+	0	655																											ATGCATTTTCTTTTTTTTTTA	0.264													2	4	---	---	---	---					
LOC101927156	101927156	broad.mit.edu	37	2	182088458	182088458	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:182088458delA	ENST00000435411.1	+	0	144																											TACGCAACATAAAGGGCTAGA	0.308													2	4	---	---	---	---					
AC007563.3	0	broad.mit.edu	37	2	217666002	217666003	+	RNA	INS	-	-	TT	rs147142548	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr2:217666002_217666003insTT	ENST00000434973.1	+	0	78				AC007563.5_ENST00000447289.1_RNA																							TGAATAAAATATTTTTTTTGCT	0.307													4	2	---	---	---	---					
RP11-761N21.1	0	broad.mit.edu	37	3	40817178	40817179	+	RNA	DEL	GC	GC	-	rs668680	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:40817178_40817179delGC	ENST00000412811.1	+	0	265																											gtgtgtgtgtgCGCGCATTTga	0.475													2	4	---	---	---	---					
LOC102724297	102724297	broad.mit.edu	37	3	46447370	46447370	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:46447370delT	ENST00000451485.1	-	0	163																											ctccttcttcttttttttttc	0.512													2	4	---	---	---	---					
LINC00971	440970	broad.mit.edu	37	3	84761953	84761953	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:84761953delA	ENST00000484892.1	-	0	1846					NR_033860.1																						caacaaacataaaaaaaaatg	0.313													3	6	---	---	---	---					
LOC101927056	101927056	broad.mit.edu	37	3	125598570	125598571	+	RNA	INS	-	-	A	rs72587482	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:125598570_125598571insA	ENST00000468859.1	-	0	1456																											ctgtctcaaacaaaaaaaaaag	0.401													2	4	---	---	---	---					
RP11-167H9.5	0	broad.mit.edu	37	3	149939923	149939924	+	RNA	DEL	GT	GT	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:149939923_149939924delGT	ENST00000474444.1	-	0	304																											gtgtgagACAgtgtgtgtgtgt	0.465													2	4	---	---	---	---					
RP11-23D24.2	0	broad.mit.edu	37	3	153234077	153234077	+	RNA	DEL	C	C	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr3:153234077delC	ENST00000493214.2	-	0	381																											gatttacattcccaccaacag	0.393													2	4	---	---	---	---					
SH3TC1	54436	broad.mit.edu	37	4	8229060	8229061	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:8229060_8229061insG	ENST00000539824.1	+	12	1785_1786	c.1411_1412insG	c.(1411-1413)gggfs	p.G471fs	SH3TC1_ENST00000245105.3_Frame_Shift_Ins_p.G547fs|SH3TC1_ENST00000514274.1_3'UTR			Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	547							binding			NS(1)|breast(3)|endometrium(4)|kidney(4)|large_intestine(6)|lung(10)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	33						GGCACAGGCCCGGGGGGCGGCC	0.698													2	4	---	---	---	---					
TAPT1-AS1	202020	broad.mit.edu	37	4	16258629	16258629	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:16258629delA	ENST00000570786.1	+	0	984				TAPT1-AS1_ENST00000573950.1_RNA	NR_027696.1																						caaccaccctaaaaaagcatt	0.358													2	4	---	---	---	---					
RP11-556I14.2	0	broad.mit.edu	37	4	105714445	105714445	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:105714445delT	ENST00000515127.1	-	0	366																											ACCTATACCCTTTAAGGAAAT	0.378													2	4	---	---	---	---					
RP11-125O18.1	0	broad.mit.edu	37	4	128323486	128323489	+	RNA	DEL	TGGA	TGGA	-	rs33965706		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:128323486_128323489delTGGA	ENST00000504050.1	-	0	333																											TATCTTTAACtggatggatggatg	0.422													2	4	---	---	---	---					
RP11-371F15.3	0	broad.mit.edu	37	4	139759296	139759296	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:139759296delA	ENST00000507038.1	-	0	303				RP11-371F15.3_ENST00000511951.1_RNA																							GAGCGGTGGGAAAAGATGAGA	0.473													2	4	---	---	---	---					
CTB-191D16.1	0	broad.mit.edu	37	4	149862871	149862871	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:149862871delA	ENST00000504394.1	-	0	160																											GATGACATACAAAGAAAATTC	0.358													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150611570	150611571	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:150611570_150611571insG	ENST00000511993.1	-	0	817				RP11-707F2.1_ENST00000505781.1_lincRNA																							tttggggacttggggggaaagg	0.450													2	4	---	---	---	---					
RP11-73G16.2	0	broad.mit.edu	37	4	152853892	152853893	+	RNA	INS	-	-	TG			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:152853892_152853893insTG	ENST00000507949.1	+	0	176																											CTGCTGTTTCTtgtgtgtgtgc	0.421													3	5	---	---	---	---					
RP11-242J7.1	0	broad.mit.edu	37	4	185536410	185536413	+	RNA	DEL	TTTG	TTTG	-	rs146473442		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:185536410_185536413delTTTG	ENST00000522554.1	-	0	292																											CAAAGCCGATtttgtttgtttgtt	0.451													2	4	---	---	---	---					
RP11-706F1.2	0	broad.mit.edu	37	4	190211024	190211025	+	RNA	INS	-	-	A	rs11463453	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:190211024_190211025insA	ENST00000504057.1	-	0	158																											gactccgtctcaaaaaaaaaag	0.525													3	3	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190825682	190825683	+	RNA	INS	-	-	T	rs138468383		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr4:190825682_190825683insT	ENST00000511785.1	-	0	231																											AACTACTGTGATATTTTTTAGA	0.347													5	9	---	---	---	---					
LINC01020	340094	broad.mit.edu	37	5	5043459	5043460	+	RNA	DEL	AG	AG	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:5043459_5043460delAG	ENST00000508201.1	+	0	308																											aaagaaagaaagagagagagag	0.416													3	3	---	---	---	---					
FLJ33360	401172	broad.mit.edu	37	5	6311282	6311283	+	RNA	INS	-	-	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:6311282_6311283insA	ENST00000507444.1	-	0	1689_1690					NR_028351.1																						actaaaaatacaaaaattagcc	0.540													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	7004483	7004484	+	RNA	DEL	GT	GT	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:7004483_7004484delGT	ENST00000512838.1	+	0	69																											GAACgtgtgcgtgtgtgtgtgt	0.401													2	4	---	---	---	---					
LOC100653061	100653061	broad.mit.edu	37	5	34182134	34182134	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:34182134delT	ENST00000514048.1	-	0	231																											ataaaaaggattttttttttt	0.512													3	6	---	---	---	---					
MEF2C-AS1	101929423	broad.mit.edu	37	5	88442496	88442496	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:88442496delT	ENST00000512585.1	+	0	202				MEF2C-AS1_ENST00000514571.1_RNA|MEF2C-AS1_ENST00000514092.1_RNA																							aaagcatttatttacatcagt	0.318													2	4	---	---	---	---					
RP11-114J13.1	0	broad.mit.edu	37	5	125423356	125423357	+	RNA	INS	-	-	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:125423356_125423357insA	ENST00000450613.2	-	0	226																											ataattgtcagaaaaaccaagg	0.446													2	4	---	---	---	---					
PCDHGC3	5098	broad.mit.edu	37	5	140857727	140857728	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr5:140857727_140857728insC	ENST00000308177.3	+	1	2148_2149	c.2044_2045insC	c.(2044-2046)cccfs	p.P682fs	PCDHGA5_ENST00000518069.1_Intron|PCDHGB3_ENST00000576222.1_Intron|PCDHGA4_ENST00000571252.1_Intron|PCDHGB1_ENST00000523390.1_Intron|PCDHGA6_ENST00000517434.1_Intron|PCDHGB2_ENST00000522605.1_Intron|PCDHGA7_ENST00000518325.1_Intron|PCDHGA12_ENST00000252085.3_Intron|PCDHGA3_ENST00000253812.6_Intron|PCDHGA1_ENST00000517417.1_Intron|PCDHGA9_ENST00000573521.1_Intron|PCDHGA2_ENST00000394576.2_Intron|PCDHGA10_ENST00000398610.2_Intron|PCDHGB6_ENST00000520790.1_Intron|PCDHGB7_ENST00000398594.2_Intron|PCDHGA8_ENST00000398604.2_Intron|PCDHGA11_ENST00000398587.2_Intron|PCDHGB4_ENST00000519479.1_Intron|PCDHGA11_ENST00000518882.1_Intron	NM_002588.2|NM_032402.1	NP_002579.2|NP_115778.1														breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(8)|lung(8)|ovary(2)|skin(2)|urinary_tract(1)	29			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTGGCTCTGCCCCCCGGGAG	0.515											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	102	---	---	---	---					
RP3-380B8.4	0	broad.mit.edu	37	6	5870254	5870254	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr6:5870254delT	ENST00000454882.2	+	0	231																											TGAGAAACTCTTTTTTTTTTT	0.423													2	4	---	---	---	---					
LY86-AS1	285780	broad.mit.edu	37	6	6579463	6579464	+	RNA	DEL	TG	TG	-	rs67625717		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr6:6579463_6579464delTG	ENST00000435641.1	-	0	388				LY86-AS1_ENST00000429345.1_RNA|LY86-AS1_ENST00000447858.1_RNA																							ACAGTATGATtgtgtgtgtgtg	0.312													2	4	---	---	---	---					
LOC101929006	101929006	broad.mit.edu	37	6	29205088	29205088	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr6:29205088delT	ENST00000441381.1	+	0	79																											tgctgtatccttttttttttt	0.453													2	4	---	---	---	---					
RP11-436D23.1	0	broad.mit.edu	37	6	98403235	98403236	+	RNA	DEL	TG	TG	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr6:98403235_98403236delTG	ENST00000607823.1	+	0	206																											cataagtatatgtgtgtgtgtg	0.282													2	4	---	---	---	---					
NPSR1-AS1	404744	broad.mit.edu	37	7	34626734	34626734	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:34626734delA	ENST00000419766.1	-	0	160					NR_033664.1|NR_033665.1																						ttcttagtgtaaatgccctaa	0.428													2	4	---	---	---	---					
LINC00174	285908	broad.mit.edu	37	7	65848930	65848931	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:65848930_65848931insG	ENST00000421767.1	-	0	547					NR_026873.1																						TACTTTTTTTTGGGGGGGAAAC	0.401													2	4	---	---	---	---					
FAM185BP	641808	broad.mit.edu	37	7	76748904	76748911	+	RNA	DEL	ACTTCTAC	ACTTCTAC	-	rs72155106		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:76748904_76748911delACTTCTAC	ENST00000459742.1	+	0	58																											AATACTTTGAACTTCTACACAGCCAGAC	0.341													2	4	---	---	---	---					
RP4-604G5.1	0	broad.mit.edu	37	7	99530402	99530403	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:99530402_99530403insG	ENST00000456499.1	+	0	327																											TTGTAAGTCTAGGGGGGGTGTC	0.505													3	5	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100367089	100367089	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:100367089delT	ENST00000542585.1	+	0	5301				ZAN_ENST00000421100.1_RNA|ZAN_ENST00000546292.1_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000427578.1_RNA|ZAN_ENST00000443370.1_RNA|ZAN_ENST00000538115.1_RNA|ZAN_ENST00000348028.3_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000349350.6_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			tttttttttcttttcttttct	0.428													2	4	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100385562	100385596	+	RNA	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	rs68029369	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:100385562_100385596delGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	ENST00000542585.1	+	0	7176_7210				ZAN_ENST00000421100.1_RNA|ZAN_ENST00000546292.1_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000427578.1_RNA|ZAN_ENST00000443370.1_RNA|ZAN_ENST00000538115.1_RNA|ZAN_ENST00000348028.3_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000349350.6_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACATTTGACGGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTATGTTCTGATCA	0.583													10	24	---	---	---	---					
RP11-736E3.1	0	broad.mit.edu	37	7	112776433	112776434	+	RNA	DEL	TG	TG	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:112776433_112776434delTG	ENST00000441928.1	+	0	273																											tgtgtgtgtatgtgtgtgtgtg	0.337													2	4	---	---	---	---					
RP11-736E3.1	0	broad.mit.edu	37	7	112785004	112785004	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:112785004delA	ENST00000441928.1	+	0	273																											ACTGCATTGTAATCACTTTCC	0.433													2	4	---	---	---	---					
EPHA1-AS1	285965	broad.mit.edu	37	7	143140116	143140116	+	RNA	DEL	C	C	-	rs113039494		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr7:143140116delC	ENST00000429289.1	+	0	206					NR_033897.1																						ataacaatcacccCCCCCCCG	0.537													2	4	---	---	---	---					
CTD-2281E23.3	0	broad.mit.edu	37	8	1197072	1197073	+	RNA	INS	-	-	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:1197072_1197073insA	ENST00000517950.1	-	0	308_309																											TCAGTGTGTGGAGTGATGGTCC	0.569													4	2	---	---	---	---					
FAM183CP	286135	broad.mit.edu	37	8	29806992	29806992	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:29806992delA	ENST00000521245.1	+	0	1116					NR_024473.1																						ttcccaccacaaaaaaaaatc	0.328													2	4	---	---	---	---					
LINC01288	103689844	broad.mit.edu	37	8	34653311	34653311	+	RNA	DEL	A	A	-	rs77645907		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:34653311delA	ENST00000519189.1	+	0	253																											GCCCTATGAGAAAAAATATAT	0.338													4	3	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	64811382	64811383	+	RNA	INS	-	-	T	rs71257221		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:64811382_64811383insT	ENST00000524360.1	-	0	195				RP11-32K4.1_ENST00000521958.1_RNA|RP11-32K4.1_ENST00000523191.1_RNA																							TTCTCAGAGTGTTTTTTTTTTT	0.322													2	4	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	65183528	65183529	+	RNA	INS	-	-	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:65183528_65183529insC	ENST00000521958.1	-	0	218				RP11-32K4.1_ENST00000523191.1_RNA																							GCCATCTTAAGCCCCTATCCTT	0.386													2	4	---	---	---	---					
CTB-118P15.2	0	broad.mit.edu	37	8	89023370	89023370	+	RNA	DEL	T	T	-	rs112506915		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:89023370delT	ENST00000518129.1	+	0	471																											tcttttactgttttttttttt	0.483													3	3	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89731214	89731214	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:89731214delA	ENST00000521936.1	+	0	59																											agtgagagctaaacatagagt	0.378													2	4	---	---	---	---					
LOC101929709	101929709	broad.mit.edu	37	8	90750192	90750193	+	RNA	INS	-	-	A			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:90750192_90750193insA	ENST00000504145.1	-	0	667																											aaatactaaggaaaaaaaaaaa	0.351													2	4	---	---	---	---					
KB-1615E4.2	0	broad.mit.edu	37	8	101513162	101513163	+	RNA	INS	-	-	A	rs113522413	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:101513162_101513163insA	ENST00000523831.1	+	0	147																											TGTTGACCAGGAAAAAAAAAAG	0.401													3	3	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130473971	130473971	+	RNA	DEL	C	C	-	rs140982449		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:130473971delC	ENST00000446592.3	-	0	360																											acactcacaacctttgagctc	0.393													3	3	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130486240	130486241	+	RNA	INS	-	-	GCTTAACATG	rs146923907	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:130486240_130486241insGCTTAACATG	ENST00000446592.3	-	0	360																											ggctcagctcagcttaacatgg	0.545													2	4	---	---	---	---					
RP11-513H8.1	0	broad.mit.edu	37	8	135255506	135255507	+	RNA	DEL	AG	AG	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:135255506_135255507delAG	ENST00000523317.1	-	0	84																											aggaggagaaagaggagaagga	0.554													2	4	---	---	---	---					
LOC401478	401478	broad.mit.edu	37	8	138861175	138861176	+	RNA	INS	-	-	A	rs112337316		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:138861175_138861176insA	ENST00000518973.1	-	0	514																											aggactctgtcaaaaaaaaaaa	0.550													2	4	---	---	---	---					
MROH5	389690	broad.mit.edu	37	8	142477454	142477463	+	RNA	DEL	CCTGGCCCTT	CCTGGCCCTT	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:142477454_142477463delCCTGGCCCTT	ENST00000430863.1	-	0	2403					NM_207414.2	NP_997297.2			maestro heat-like repeat family member 5																		CCCTCCGCCCcctggcccttcctggccctt	0.671													3	5	---	---	---	---					
CYHR1	50626	broad.mit.edu	37	8	145689658	145689659	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr8:145689658_145689659insC	ENST00000403000.2	-	2	1017_1018	c.430_431insG	c.(430-432)gatfs	p.D144fs	CTD-2517M22.16_ENST00000525461.1_RNA|CYHR1_ENST00000438911.2_Intron|CYHR1_ENST00000424149.2_Frame_Shift_Ins_p.D144fs|CYHR1_ENST00000306145.5_Frame_Shift_Ins_p.D144fs	NM_032687.3	NP_116076.1	Q6ZMK1	CYHR1_HUMAN	cysteine/histidine-rich 1	0						perinuclear region of cytoplasm	zinc ion binding	p.A144fs*>50(1)		haematopoietic_and_lymphoid_tissue(2)|lung(3)|ovary(2)	7	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			ACCCAGCATCGCCCCCCCCCAC	0.634											OREG0019056	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	19	---	---	---	---					
RFX3-AS1	101929302	broad.mit.edu	37	9	3612241	3612242	+	RNA	INS	-	-	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:3612241_3612242insC	ENST00000423112.2	+	0	394																											tcatagaggtacccccttcttg	0.460													2	4	---	---	---	---					
RP11-311H10.4	0	broad.mit.edu	37	9	33408939	33408940	+	RNA	INS	-	-	T	rs7039308	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:33408939_33408940insT	ENST00000450864.1	+	0	286																											CGGGTCTTAACttttttttttt	0.460													2	4	---	---	---	---					
LINC01501	340515	broad.mit.edu	37	9	93249296	93249297	+	RNA	DEL	GA	GA	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:93249296_93249297delGA	ENST00000449990.1	-	0	647					NR_034157.1																						TCTAACATGGGAGAGAGAGAGA	0.460													3	3	---	---	---	---					
RP11-202G18.1	0	broad.mit.edu	37	9	113980711	113980712	+	RNA	DEL	TG	TG	-	rs57483257		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:113980711_113980712delTG	ENST00000426204.1	-	0	370																											AATGGTCTTTtgtgtgtgtgtg	0.460													2	4	---	---	---	---					
RP11-343J18.2	0	broad.mit.edu	37	9	128892677	128892678	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:128892677_128892678insG	ENST00000441473.1	+	0	235																											ATCCATTCTATGGGGGCCTGGG	0.525													2	4	---	---	---	---					
ABO	28	broad.mit.edu	37	9	136139908	136139915	+	RNA	DEL	AAACTGCC	AAACTGCC	-	rs8176680		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr9:136139908_136139915delAAACTGCC	ENST00000453660.2	-	0	40							P16442	BGAT_HUMAN	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)						protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding			central_nervous_system(1)|endometrium(3)|large_intestine(2)|lung(2)|prostate(1)|stomach(2)	11				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		actttgtaagaaactgccaaactgtgtt	0.409													3	4	---	---	---	---					
LOC101929352	101929352	broad.mit.edu	37	10	31477004	31477005	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr10:31477004_31477005insG	ENST00000605929.1	+	0	193_194																											TCAAAGGCTGAGGGGGCAGGTG	0.663													2	4	---	---	---	---					
DNHD1	144132	broad.mit.edu	37	11	6567895	6567896	+	In_Frame_Ins	INS	-	-	TGCCCTACTGCA	rs35685553	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:6567895_6567896insTGCCCTACTGCA	ENST00000254579.6	+	21	6290_6291	c.5726_5727insTGCCCTACTGCA	c.(5725-5727)ggc>gTGCCCTACTGCAgc	p.1909_1909G>VPYCS	DNHD1_ENST00000527990.2_In_Frame_Ins_p.1909_1909G>VPYCS	NM_144666.2	NP_653267.2	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1	1909				A -> AALLH (in Ref. 5; BAB85004 and 6; CAB70845).	microtubule-based movement	dynein complex	microtubule motor activity			NS(1)|autonomic_ganglia(1)|breast(4)|endometrium(13)|kidney(6)|large_intestine(11)|lung(14)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	55		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATTGAGGAGGCTGCCCTACTGC	0.559													3	2	---	---	---	---					
SPON1	10418	broad.mit.edu	37	11	14121948	14121950	+	RNA	DEL	CTT	CTT	-	rs35578910		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:14121948_14121950delCTT	ENST00000310358.7	+	0	1211							Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding			NS(1)|endometrium(1)|large_intestine(5)|lung(11)|prostate(2)|upper_aerodigestive_tract(1)	21				Epithelial(150;0.00898)		TTTTAGACACCTTCTTTTCTTTC	0.296													3	4	---	---	---	---					
RP11-531H8.1	0	broad.mit.edu	37	11	15608228	15608228	+	RNA	DEL	C	C	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:15608228delC	ENST00000527770.1	+	0	550				RP11-531H8.2_ENST00000533082.1_lincRNA																							CTTGGCATCTCCCAGATTAGG	0.433													2	4	---	---	---	---					
RP11-396O20.2	0	broad.mit.edu	37	11	15773017	15773017	+	RNA	DEL	C	C	-	rs150644577		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:15773017delC	ENST00000524613.1	-	0	187																											tttctacatgcccccaggtgg	0.483													4	3	---	---	---	---					
RP11-115J23.1	0	broad.mit.edu	37	11	29014801	29014802	+	RNA	INS	-	-	A	rs147447953	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:29014801_29014802insA	ENST00000513853.1	+	0	304																											GACATGATTCCAAAAAAAGGGG	0.327													2	4	---	---	---	---					
RP11-460B17.3	0	broad.mit.edu	37	11	29591424	29591425	+	RNA	INS	-	-	TC	rs3084437	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:29591424_29591425insTC	ENST00000525097.1	-	0	70																											tataaagaaaatgtttcattgg	0.361													2	4	---	---	---	---					
RP11-727A23.10	0	broad.mit.edu	37	11	83060121	83060122	+	RNA	DEL	CG	CG	-	rs61059754		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:83060121_83060122delCG	ENST00000530045.1	+	0	537																											CACACACACACGCAGACTTCCA	0.386													2	4	---	---	---	---					
RP11-94P11.4	0	broad.mit.edu	37	11	105107116	105107116	+	RNA	DEL	A	A	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:105107116delA	ENST00000528811.1	-	0	189																											cttaaactataaaagtcctag	0.303													2	4	---	---	---	---					
RP11-469N6.1	0	broad.mit.edu	37	11	134610131	134610132	+	RNA	INS	-	-	GTGTGTA			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr11:134610131_134610132insGTGTGTA	ENST00000513405.1	+	0	947																											tgatgcatggtgtgtgtagtgt	0.520													3	3	---	---	---	---					
RP11-444D3.1	0	broad.mit.edu	37	12	24596342	24596342	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:24596342delT	ENST00000538905.1	-	0	45																											CATCACACCCTGTTGAAAATC	0.378													2	4	---	---	---	---					
RP11-428G5.5	0	broad.mit.edu	37	12	32033262	32033263	+	RNA	INS	-	-	A	rs145450581	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:32033262_32033263insA	ENST00000535163.1	-	0	37																											gaagccatcctagtgagtgacc	0.470													3	4	---	---	---	---					
RP11-511B23.2	0	broad.mit.edu	37	12	93578035	93578036	+	RNA	DEL	GT	GT	-	rs61096511		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:93578035_93578036delGT	ENST00000547432.1	-	0	316				RP11-511B23.2_ENST00000549930.1_RNA																							gacagacagagtgtgtgtgtgt	0.480													4	3	---	---	---	---					
RP11-110L15.1	0	broad.mit.edu	37	12	116202061	116202061	+	RNA	DEL	T	T	-	rs75183811		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:116202061delT	ENST00000549163.1	+	0	129																											TTTTTGTTTGTTTTTTTTTTT	0.428													3	4	---	---	---	---					
RP5-944M2.2	0	broad.mit.edu	37	12	126918249	126918250	+	RNA	INS	-	-	AC	rs142109803	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr12:126918249_126918250insAC	ENST00000544419.1	+	0	346																											tgtatatgtgtaCACACACACA	0.347													2	4	---	---	---	---					
RP11-141M1.3	0	broad.mit.edu	37	13	34123926	34123926	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr13:34123926delT	ENST00000454681.2	-	0	91																											tcagacattattttttttctc	0.378													2	4	---	---	---	---					
LINC01500	102723742	broad.mit.edu	37	14	59329178	59329178	+	RNA	DEL	G	G	-	rs33940267		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:59329178delG	ENST00000553762.1	+	0	322																											GACTGCCTGAGGAGAAAAGTG	0.428													4	4	---	---	---	---					
ELMSAN1	91748	broad.mit.edu	37	14	74206605	74206606	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:74206605_74206606insG	ENST00000286523.5	-	2	888_889	c.106_107insC	c.(106-108)gcafs	p.A36fs	ELMSAN1_ENST00000394071.2_Frame_Shift_Ins_p.A36fs	NM_194278.3	NP_919254.2			ELM2 and Myb/SANT-like domain containing 1																		GATGGACTGCTGGGGGGGCTGC	0.668													7	79	---	---	---	---					
DIO2-AS1	100628307	broad.mit.edu	37	14	80791641	80791641	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:80791641delT	ENST00000553979.1	+	0	178					NR_038355.1																						GTAGGGACTCTTGCTCTGCTG	0.463													2	4	---	---	---	---					
LINC00911	100996280	broad.mit.edu	37	14	85881098	85881099	+	RNA	INS	-	-	G	rs77251917	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:85881098_85881099insG	ENST00000557547.1	-	0	110				LINC00911_ENST00000555272.1_lincRNA																							aattggcatttgagctgaaata	0.426													4	4	---	---	---	---					
RP11-1070N10.5	0	broad.mit.edu	37	14	96092918	96092919	+	RNA	INS	-	-	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:96092918_96092919insT	ENST00000555032.1	+	0	120																											caccttaatcatttttaaatgt	0.386													2	4	---	---	---	---					
RP11-1082A3.1	0	broad.mit.edu	37	14	98967348	98967348	+	RNA	DEL	T	T	-	rs10564569		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:98967348delT	ENST00000554515.1	+	0	107																											TCCTGTAttcttttttttttt	0.502													2	4	---	---	---	---					
RP11-1082A3.1	0	broad.mit.edu	37	14	98971627	98971628	+	RNA	DEL	AC	AC	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr14:98971627_98971628delAC	ENST00000554515.1	+	0	107																											acaacacaagacacacacacac	0.495													2	4	---	---	---	---					
RP11-507B12.2	0	broad.mit.edu	37	15	61906094	61906095	+	RNA	INS	-	-	T			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr15:61906094_61906095insT	ENST00000559783.1	-	0	35																											caacattgcagttttttggagg	0.450													2	4	---	---	---	---					
RP11-809H16.5	0	broad.mit.edu	37	15	69389778	69389779	+	RNA	DEL	TC	TC	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr15:69389778_69389779delTC	ENST00000559870.1	+	0	434																											CCCAATACTATCTCTCTCTTTT	0.401													2	4	---	---	---	---					
AC004125.3	0	broad.mit.edu	37	16	24250651	24250652	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr16:24250651_24250652insG	ENST00000567624.1	+	0	52																											caaatcaagcaggggaaaagtg	0.426													2	4	---	---	---	---					
HERC2P4	100289574	broad.mit.edu	37	16	32123215	32123215	+	RNA	DEL	G	G	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr16:32123215delG	ENST00000564145.1	-	0	456																											tattctagaaGGATAAATTAT	0.343													4	5	---	---	---	---					
RP11-42I10.1	0	broad.mit.edu	37	16	48670514	48670515	+	RNA	INS	-	-	AAAC	rs113650654	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr16:48670514_48670515insAAAC	ENST00000564212.1	+	0	157																											actctgtctcaaaacaaacaaa	0.455													3	5	---	---	---	---					
LOC283856	283856	broad.mit.edu	37	16	56170279	56170280	+	RNA	INS	-	-	C			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr16:56170279_56170280insC	ENST00000501259.1	-	0	1691				RP11-355E10.1_ENST00000564102.1_lincRNA	NR_027078.1																						ttaatatatttcccccatgcca	0.406													2	4	---	---	---	---					
RP5-1029F21.3	0	broad.mit.edu	37	17	410482	410483	+	RNA	INS	-	-	G	rs142334912	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr17:410482_410483insG	ENST00000571282.1	+	0	126																											CGACAGGCTGTGGGGGGGAGTG	0.584													3	5	---	---	---	---					
LINC01482	101928104	broad.mit.edu	37	17	66668467	66668467	+	RNA	DEL	G	G	-	rs77199359		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr17:66668467delG	ENST00000585484.1	+	0	183																											TACCTCTGATGGGGGGGGAAT	0.373													5	1	---	---	---	---					
LINC00907	284260	broad.mit.edu	37	18	39856095	39856096	+	RNA	INS	-	-	CACA	rs72008022		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr18:39856095_39856096insCACA	ENST00000593234.1	+	0	402					NR_046456.1																						acacgtgcgcgcacacacacac	0.446													3	6	---	---	---	---					
LOC642484	642484	broad.mit.edu	37	18	53675786	53675786	+	RNA	DEL	G	G	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr18:53675786delG	ENST00000382897.2	-	0	2266				CTD-2008L17.1_ENST00000589440.1_lincRNA																							GAGAGTGATTGGCATCCTTGG	0.473													2	4	---	---	---	---					
ZNF667-AS1	100128252	broad.mit.edu	37	19	57005413	57005413	+	RNA	DEL	G	G	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr19:57005413delG	ENST00000585445.1	+	0	251					NR_036521.1																						catgcctggTGGACATTCCAT	0.522													2	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11037486	11037487	+	RNA	DEL	AG	AG	-	rs147195770		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr21:11037486_11037487delAG	ENST00000470054.1	-	0	1476									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAGTCTTTTCAGAGTCAGAATG	0.257													3	5	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11039939	11039941	+	RNA	DEL	GTT	GTT	-	rs146620410		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr21:11039939_11039941delGTT	ENST00000470054.1	-	0	774									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGATATAATCGTTGTTCTTCATC	0.320													4	8	---	---	---	---					
LINC01425	101927821	broad.mit.edu	37	21	23127537	23127538	+	RNA	DEL	GT	GT	-	rs59438344		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr21:23127537_23127538delGT	ENST00000430060.1	+	0	349																											cttttaaagagtgtgtgtgtgt	0.406													2	4	---	---	---	---					
LOC400867	400867	broad.mit.edu	37	21	40303290	40303291	+	RNA	INS	-	-	AAC	rs145207873	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr21:40303290_40303291insAAC	ENST00000380931.2	-	0	620																											AATTGCCTTCAAACAACAACAA	0.376													7	1	---	---	---	---					
ISX-AS1	101926957	broad.mit.edu	37	22	35432289	35432290	+	RNA	DEL	CT	CT	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr22:35432289_35432290delCT	ENST00000448318.4	-	0	686																											ttctctctccctctctctctct	0.470													3	5	---	---	---	---					
RP1-151B14.6	0	broad.mit.edu	37	22	37572767	37572768	+	RNA	INS	-	-	G			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chr22:37572767_37572768insG	ENST00000419128.1	+	0	208																											GGGAGAGGAGAGGGGGGCTGCA	0.609													2	4	---	---	---	---					
LINC01420	550643	broad.mit.edu	37	X	56818404	56818404	+	RNA	DEL	T	T	-			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1a70a4b-2879-48e8-87e1-b02c57d58705	c7abe259-4625-4469-8083-e5b9f9e21c3f	g.chrX:56818404delT	ENST00000374922.4	+	0	468					NR_015367.2																						cctctgtctctttttttttct	0.378													2	4	---	---	---	---					
