Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													4	62					0.00307968	0.00307968	1	1	0
ATP2A3	489	broad.mit.edu	37	17	3853826	3853826	+	Silent	SNP	G	G	A	rs77891411	byFrequency	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:3853826G>A	ENST00000309890.7	-	7	759	c.609C>T	c.(607-609)gaC>gaT	p.D203D	ATP2A3_ENST00000352011.3_Silent_p.D203D|ATP2A3_ENST00000397043.3_Silent_p.D203D|ATP2A3_ENST00000397035.3_Silent_p.D203D|ATP2A3_ENST00000397039.1_5'UTR|ATP2A3_ENST00000397041.3_Silent_p.D203D|ATP2A3_ENST00000359983.3_Silent_p.D203D	NM_174953.2|NM_174954.2|NM_174955.2|NM_174956.2	NP_777613.1|NP_777614.1|NP_777615.1|NP_777616.1	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous	203					ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(11)|ovary(3)|prostate(1)|skin(3)|stomach(1)|urinary_tract(1)	36				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		TGTTCTTCTTGTCCTGGTTCA	0.478000													5	22					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145293128	145293128	+	Missense_Mutation	SNP	C	C	T	rs7366463	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:145293128C>T	ENST00000468030.1	+	5	985	c.649C>T	c.(649-651)Cgc>Tgc	p.R217C	NBPF10_ENST00000369338.1_5'UTR|NBPF10_ENST00000369339.2_Intron																							TTACCTGGCACGCTGGCCACA	0.498000													3	28					0	0	1	0	0
SDHA	6389	broad.mit.edu	37	5	231090	231090	+	Silent	SNP	A	A	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:231090A>C	ENST00000264932.6	+	7	985	c.870A>C	c.(868-870)ctA>ctC	p.L290L	SDHA_ENST00000510361.1_Silent_p.L242L|SDHA_ENST00000504309.1_Silent_p.L290L	NM_004168.2	NP_004159.2	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	290					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity	p.L290L(1)		NS(1)|breast(1)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(6)|liver(2)|lung(16)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	40			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	GCCAGGACCTAGAGTTTGTTC	0.592000									Familial Paragangliomas				4	30					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													4	62					0	0	1	0	0
LINC00854	100874261	broad.mit.edu	37	17	41382237	41382237	+	RNA	SNP	C	C	A	rs1060934	byFrequency	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:41382237C>A	ENST00000433702.2	-	0	14					NR_047479.1																						TGGCTCTATGCGGTACTAAAG	0.537000													8	38					0.000157383	0.000171691	1	1	0
ANKRD36C	400986	broad.mit.edu	37	2	96593025	96593025	+	Missense_Mutation	SNP	C	C	T	rs75189823	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:96593025C>T	ENST00000456556.1	-	28	1960	c.1876G>A	c.(1876-1878)Gat>Aat	p.D626N						ankyrin repeat domain 36C									p.D626N(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TCTTTCTCATCACTTGTAGCC	0.318000													4	58					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	116447279	116447279	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:116447279A>T	ENST00000410059.1	+	6	938	c.458A>T	c.(457-459)tAt>tTt	p.Y153F	DPP10_ENST00000393147.2_Missense_Mutation_p.Y157F|DPP10_ENST00000488208.1_3'UTR|DPP10_ENST00000409163.1_Missense_Mutation_p.Y103F|DPP10_ENST00000310323.8_Missense_Mutation_p.Y146F	NM_001178037.1|NM_020868.3	NP_001171508.1|NP_065919.2	Q8N608	DPP10_HUMAN	dipeptidyl-peptidase 10 (non-functional)	153					proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			breast(4)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(24)|liver(2)|lung(48)|ovary(6)|prostate(1)|skin(5)|soft_tissue(1)	101						CATTATTCGTATACTGCTTCA	0.264000													5	18					0	0	1	0	0
RP5-1198O20.4	0	broad.mit.edu	37	1	44537663	44537664	+	RNA	INS	-	-	G	rs7412689	byFrequency	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:44537663_44537664insG	ENST00000434244.1	+	0	930																											TGTTTTTTTTTGGGGGGGGACG	0.540													3	4	---	---	---	---					
MGC27382	149047	broad.mit.edu	37	1	78716740	78716741	+	RNA	INS	-	-	GAGT			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:78716740_78716741insGAGT	ENST00000436742.1	+	0	958																											agagagagagagagtgtgtgtg	0.441													4	4	---	---	---	---					
LOC101927412	101927412	broad.mit.edu	37	1	81027021	81027021	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:81027021delG	ENST00000443104.1	+	0	236				RP11-115A15.1_ENST00000437080.1_lincRNA																							ttctgctcctgggaagataag	0.383													2	4	---	---	---	---					
GSTM5	2949	broad.mit.edu	37	1	110269977	110269978	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:110269977_110269978insG	ENST00000431955.1	+	0	249																											aagggagttttggggggggcag	0.505													2	4	---	---	---	---					
RP5-965F6.2	0	broad.mit.edu	37	1	112826990	112826991	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:112826990_112826991insG	ENST00000427290.1	-	0	167																											AGAAAAAGGAAGGGGGGAAAGG	0.470													2	4	---	---	---	---					
LOC101927648	101927648	broad.mit.edu	37	1	143418479	143418480	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:143418479_143418480insG	ENST00000423249.1	-	0	59																											gcctatttagtggggggtggtc	0.525													3	5	---	---	---	---					
SEC22B	9554	broad.mit.edu	37	1	145107771	145107774	+	RNA	DEL	AAAT	AAAT	-	rs3977178		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:145107771_145107774delAAAT	ENST00000453618.1	+	0	512							O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)						ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding										agcaaaaaacaaataaccccattt	0.309													4	8	---	---	---	---					
LOC101928009	101928009	broad.mit.edu	37	1	153148532	153148533	+	RNA	INS	-	-	A	rs112027836		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:153148532_153148533insA	ENST00000427145.1	+	0	128																											aactccatctcaaaaaaaaaaa	0.480													2	4	---	---	---	---					
LINC00970	101978719	broad.mit.edu	37	1	168928386	168928386	+	RNA	DEL	A	A	-	rs66947140		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:168928386delA	ENST00000366408.3	-	0	209																											GATTAAGAATAAGACTATTTT	0.393													3	4	---	---	---	---					
LOC101928650	101928650	broad.mit.edu	37	1	170451963	170451963	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:170451963delT	ENST00000416416.1	-	0	113				RP11-576I22.2_ENST00000456083.1_RNA|RP11-576I22.2_ENST00000446102.1_RNA																							GTATTGGATCTTTTTTGCTCC	0.343													2	4	---	---	---	---					
RP1-15D23.2	0	broad.mit.edu	37	1	173022609	173022610	+	RNA	INS	-	-	A	rs59791684		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:173022609_173022610insA	ENST00000432694.1	+	0	656																											gactccgtctcaaaaaaaaaaa	0.475													2	4	---	---	---	---					
PAPPA2	60676	broad.mit.edu	37	1	176563963	176563964	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:176563963_176563964insG	ENST00000367662.3	+	3	2387_2388	c.1223_1224insG	c.(1222-1224)cggfs	p.R408fs	PAPPA2_ENST00000367661.3_Frame_Shift_Ins_p.R408fs	NM_020318.2	NP_064714.2	Q9BXP8	PAPP2_HUMAN	pappalysin 2	408					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.L408fs*49(2)|p.L408L(2)		NS(3)|breast(3)|central_nervous_system(7)|cervix(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(19)|lung(136)|ovary(7)|pancreas(1)|prostate(4)|skin(10)|upper_aerodigestive_tract(8)|urinary_tract(1)	226						TCTTTGCTCCTGGGGGGAGACA	0.574													7	283	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177434194	177434194	+	RNA	DEL	A	A	-	rs145781148		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:177434194delA	ENST00000438575.1	-	0	296																											GTCCAGTAAGAAAAAAAAAAC	0.408													2	4	---	---	---	---					
LINC01344	400799	broad.mit.edu	37	1	182222056	182222057	+	RNA	DEL	AA	AA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:182222056_182222057delAA	ENST00000449842.1	-	0	410																											gaggggaaataaagagaagatg	0.347													2	4	---	---	---	---					
LINC01036	104169671	broad.mit.edu	37	1	187272725	187272726	+	RNA	INS	-	-	TTCT	rs147441972	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:187272725_187272726insTTCT	ENST00000458683.1	+	0	179																											ttctttctttcttctttctttc	0.327													3	3	---	---	---	---					
LINC01031	101929184	broad.mit.edu	37	1	193277759	193277760	+	RNA	INS	-	-	TG			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:193277759_193277760insTG	ENST00000420807.1	+	0	194																											ctctctctctctctgtgtgtgt	0.421													4	4	---	---	---	---					
PROX1-AS1	100505832	broad.mit.edu	37	1	214155398	214155399	+	RNA	INS	-	-	AAA	rs12403994	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:214155398_214155399insAAA	ENST00000598091.1	-	0	51				PROX1-AS1_ENST00000451396.2_RNA																							acaacaacaacaaaacacccct	0.495													3	4	---	---	---	---					
RP11-400N13.1	0	broad.mit.edu	37	1	222388381	222388381	+	RNA	DEL	G	G	-	rs11326385		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:222388381delG	ENST00000416510.1	-	0	278																											TCCAGGCCAAGGCAGCAGAGT	0.468													4	9	---	---	---	---					
RP4-781K5.7	0	broad.mit.edu	37	1	234848299	234848299	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:234848299delA	ENST00000422414.1	+	0	51																											ctcaaaaaacaaaaaaaaaaa	0.398													2	4	---	---	---	---					
RP11-261C10.1	0	broad.mit.edu	37	1	243169324	243169326	+	RNA	DEL	AGG	AGG	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr1:243169324_243169326delAGG	ENST00000427176.1	-	0	612_614																											AAAGGTATGAAGGAGAAGATGGA	0.463													5	11	---	---	---	---					
LINC01248	102723818	broad.mit.edu	37	2	5779833	5779834	+	RNA	INS	-	-	A	rs6720176		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:5779833_5779834insA	ENST00000453678.1	-	0	331				AC107057.2_ENST00000458264.1_RNA																							aaaaaCCAAACAAAAAAAAAAC	0.416													3	4	---	---	---	---					
LINC01248	102723818	broad.mit.edu	37	2	5782974	5782974	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:5782974delT	ENST00000453678.1	-	0	331				AC107057.2_ENST00000458264.1_RNA																							tacttacaacttttttttttg	0.333													2	4	---	---	---	---					
LINC00299	339789	broad.mit.edu	37	2	8436846	8436846	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:8436846delA	ENST00000442956.1	-	0	965																											tttcctttataaattacccag	0.433													2	4	---	---	---	---					
RP11-734K21.4	0	broad.mit.edu	37	2	9285127	9285128	+	RNA	DEL	AC	AC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:9285127_9285128delAC	ENST00000474561.1	+	0	362																											tccattcacaacacacacacac	0.475													5	3	---	---	---	---					
AC010145.4	0	broad.mit.edu	37	2	16145372	16145373	+	RNA	INS	-	-	CTTCTTCTC	rs11690198	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:16145372_16145373insCTTCTTCTC	ENST00000422415.2	-	0	152																											tcttcctccttcttcttctcct	0.574													3	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22210459	22210459	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:22210459delA	ENST00000450551.1	-	0	200																											GTTGAAATGGAAATGAAGCAA	0.358													2	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22611689	22611691	+	RNA	DEL	CAA	CAA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:22611689_22611691delCAA	ENST00000450551.1	-	0	70				AC096570.2_ENST00000419013.1_lincRNA																							gggactcaatcaagatggtgttc	0.438													4	3	---	---	---	---					
LINC01317	104355287	broad.mit.edu	37	2	34306793	34306804	+	RNA	DEL	TGTGTGTGTGTG	TGTGTGTGTGTG	-	rs71947168		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:34306793_34306804delTGTGTGTGTGTG	ENST00000366209.2	+	0	389																											tcatgctgtatgtgtgtgtgtgtgtgtgtgtg	0.377													4	6	---	---	---	---					
LOC728730	728730	broad.mit.edu	37	2	39687125	39687126	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:39687125_39687126insA	ENST00000449569.1	+	0	282				AC007246.3_ENST00000443038.1_RNA|AC007246.3_ENST00000426083.1_RNA|AC007246.3_ENST00000422128.1_RNA|AC007246.3_ENST00000446698.1_RNA|AC007246.3_ENST00000445520.1_RNA	NR_037875.1																						ataaagctaaCAAAAaaaaagt	0.267													2	4	---	---	---	---					
LOC728730	728730	broad.mit.edu	37	2	39702234	39702235	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:39702234_39702235insA	ENST00000449569.1	+	0	282				AC007246.3_ENST00000443038.1_RNA|AC007246.3_ENST00000426083.1_RNA|AC007246.3_ENST00000422128.1_RNA|AC007246.3_ENST00000446698.1_RNA	NR_037875.1																						gactccatctgaaaaaaaaaaa	0.455													3	4	---	---	---	---					
SLC8A1-AS1	100128590	broad.mit.edu	37	2	40128458	40128461	+	RNA	DEL	TTTC	TTTC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:40128458_40128461delTTTC	ENST00000599740.1	+	0	73																											TTACAGTTTATTTCTTTCTATTTC	0.328													3	3	---	---	---	---					
SLC8A1-AS1	100128590	broad.mit.edu	37	2	40142531	40142531	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:40142531delA	ENST00000599740.1	+	0	73																											gtattgctggatcataagata	0.353													2	4	---	---	---	---					
SLC8A1-AS1	100128590	broad.mit.edu	37	2	40310767	40310767	+	RNA	DEL	T	T	-	rs58937996		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:40310767delT	ENST00000599268.1	+	0	509				SLC8A1-AS1_ENST00000418854.1_RNA|SLC8A1-AS1_ENST00000597385.1_RNA|SLC8A1-AS1_ENST00000599740.1_RNA|SLC8A1-AS1_ENST00000439606.1_RNA|SLC8A1-AS1_ENST00000601679.1_RNA																							cccctctgtcttttttttttt	0.328													3	3	---	---	---	---					
AC016735.1	0	broad.mit.edu	37	2	43229853	43229854	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:43229853_43229854insC	ENST00000457457.2	-	0	111																											TTATTTTTCTTCCCCCTCAAAC	0.347													2	4	---	---	---	---					
AC079807.4	0	broad.mit.edu	37	2	48325184	48325185	+	RNA	INS	-	-	T	rs112073974		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:48325184_48325185insT	ENST00000447571.1	-	0	240																		p.0?(2)									gtttcactatcttttttttttg	0.475													2	4	---	---	---	---					
LINC01122	400955	broad.mit.edu	37	2	58914449	58914449	+	RNA	DEL	C	C	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:58914449delC	ENST00000452840.1	+	0	257																											TTGAAATCATCTTTCCTGTAT	0.388													4	6	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59887068	59887068	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:59887068delG	ENST00000606382.1	-	0	236																											TAATTGCTTTGGGCTACTTCA	0.458													2	4	---	---	---	---					
AC023115.2	0	broad.mit.edu	37	2	67495703	67495703	+	RNA	DEL	C	C	-	rs10711392		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:67495703delC	ENST00000452716.1	+	0	394																											TCTTAGCCAGCCCCCATACAT	0.413													3	4	---	---	---	---					
AC010987.5	0	broad.mit.edu	37	2	67870574	67870574	+	RNA	DEL	G	G	-	rs36031714		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:67870574delG	ENST00000419809.1	-	0	126																											GGCTGGATTTGGGAGAGGGAT	0.403													3	6	---	---	---	---					
ANKRD36BP2	645784	broad.mit.edu	37	2	89075328	89075329	+	RNA	INS	-	-	TG	rs151056201	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:89075328_89075329insTG	ENST00000393525.3	+	0	401																											GCCTGCATGACTGGACAACATG	0.361													2	4	---	---	---	---					
ANKRD36BP2	645784	broad.mit.edu	37	2	89075573	89075582	+	RNA	DEL	GGTCCTATTT	GGTCCTATTT	-	rs5832741		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:89075573_89075582delGGTCCTATTT	ENST00000393525.3	+	0	401																											ATCCTTCTGGGGTCCTATTTGGTCCTTTCG	0.386													2	4	---	---	---	---					
ANKRD36C	400986	broad.mit.edu	37	2	96525717	96525718	+	Frame_Shift_Ins	INS	-	-	T	rs77057279	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:96525717_96525718insT	ENST00000456556.1	-	61	3871_3872	c.3787_3788insA	c.(3787-3789)gaafs	p.E1263fs	ANKRD36C_ENST00000420871.2_Frame_Shift_Ins_p.E514fs|ANKRD36C_ENST00000419039.2_Frame_Shift_Ins_p.E290fs					ankyrin repeat domain 36C											breast(1)|endometrium(8)|kidney(5)|lung(4)	18						CTTATTTTTCAGTTTTCGAATT	0.282													6	7	---	---	---	---					
RP11-76I14.1	0	broad.mit.edu	37	2	104670814	104670815	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:104670814_104670815insA	ENST00000412112.3	+	0	119																											CTCAAAATCAGAAAAAAATTAA	0.337													2	4	---	---	---	---					
LOC101928173	101928173	broad.mit.edu	37	2	112262640	112262641	+	RNA	DEL	TT	TT	-	rs57938938		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:112262640_112262641delTT	ENST00000455309.1	+	0	390																											ttctgttttctttttttttttt	0.450													2	4	---	---	---	---					
DARS-AS1	101928243	broad.mit.edu	37	2	136750940	136750941	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:136750940_136750941insA	ENST00000419808.1	+	0	341				AC093391.2_ENST00000438432.1_RNA|AC093391.2_ENST00000446492.1_RNA																							agaggcctcggaaaaaaaatca	0.436													2	4	---	---	---	---					
TEX41	401014	broad.mit.edu	37	2	145795035	145795036	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:145795035_145795036insC	ENST00000445791.1	+	0	307					NR_033870.2																						TTTTTTAAGCGCCCCCCACACA	0.322													2	4	---	---	---	---					
AC113610.1	0	broad.mit.edu	37	2	151095645	151095645	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:151095645delA	ENST00000429317.1	-	0	254				AC016682.1_ENST00000437118.1_lincRNA																							caatgatggtagatgacctgg	0.483													2	4	---	---	---	---					
AC074363.1	0	broad.mit.edu	37	2	168291034	168291034	+	RNA	DEL	A	A	-	rs35876291		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:168291034delA	ENST00000442316.1	+	0	164																											agtactctgtaaaaaaaaaaa	0.328													7	3	---	---	---	---					
AC016723.4	0	broad.mit.edu	37	2	168755802	168755802	+	RNA	DEL	A	A	-	rs79006051		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:168755802delA	ENST00000436982.2	-	0	87																											AACTCACTACAAAAAAAAAAA	0.378													2	4	---	---	---	---					
TTN	7273	broad.mit.edu	37	2	179563643	179563644	+	Splice_Site	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:179563643_179563644insA	ENST00000589042.1	-	112	30907		c.e112-2		TTN_ENST00000591111.1_Splice_Site|TTN_ENST00000359218.5_Intron|TTN-AS1_ENST00000589830.1_RNA|TTN_ENST00000342992.6_Splice_Site|TTN-AS1_ENST00000431752.1_RNA|TTN_ENST00000460472.2_Intron|TTN_ENST00000342175.6_Intron|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000585451.1_RNA	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTGGTAACTaaaaaaaaaaa	0.277													2	4	---	---	---	---					
AC007319.1	0	broad.mit.edu	37	2	187957209	187957215	+	RNA	DEL	TTGTCAC	TTGTCAC	-	rs5837014		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:187957209_187957215delTTGTCAC	ENST00000412276.1	+	0	92				AC007319.1_ENST00000453517.1_RNA																							ATGATATAATTTGTCACTTAAACGAAG	0.329													4	4	---	---	---	---					
AC098617.1	0	broad.mit.edu	37	2	192715201	192715202	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:192715201_192715202insC	ENST00000424116.2	+	0	233																											GATCACCAGCTCCCCCGAACAC	0.455													2	4	---	---	---	---					
PTH2R	5746	broad.mit.edu	37	2	209370251	209370252	+	RNA	INS	-	-	TT			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:209370251_209370252insTT	ENST00000424628.1	+	0	103																											tgatgttgagcttttttttttt	0.342													3	4	---	---	---	---					
AC107218.3	0	broad.mit.edu	37	2	215506951	215506952	+	RNA	INS	-	-	T	rs143367752	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:215506951_215506952insT	ENST00000437883.1	-	0	132				AC107218.3_ENST00000412896.1_RNA																							CTGCAACTTGGTTTTTTTCCAT	0.272													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217635906	217635908	+	RNA	DEL	TTT	TTT	-	rs60108796		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:217635906_217635908delTTT	ENST00000447289.1	+	0	510																											TATCTGTGACttttttttttttt	0.438													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217855358	217855359	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:217855358_217855359insG	ENST00000447289.1	+	0	510				AC007563.5_ENST00000607591.1_RNA																							TTAGAAAATTTGGGGGATAGAA	0.386													2	4	---	---	---	---					
AC114765.1	0	broad.mit.edu	37	2	220991412	220991413	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:220991412_220991413insG	ENST00000432993.1	+	0	306																											ACTCTGAGGTTGGGGGTATTGC	0.421													2	4	---	---	---	---					
AC114765.1	0	broad.mit.edu	37	2	221274089	221274089	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:221274089delT	ENST00000432993.1	+	0	427																											ttcctgatgattttttttttc	0.333													2	4	---	---	---	---					
AC079135.1	0	broad.mit.edu	37	2	237203500	237203501	+	RNA	DEL	AG	AG	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:237203500_237203501delAG	ENST00000415226.1	+	0	482_483																											TCTTTGTTTCAGAAGGTAATGA	0.510													2	4	---	---	---	---					
FLJ43879	401039	broad.mit.edu	37	2	239844912	239844912	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:239844912delA	ENST00000455228.1	-	0	2218					NR_034162.1																						ATGTCCCTCTAAAAAGCATAA	0.547													2	4	---	---	---	---					
LINC01237	101927289	broad.mit.edu	37	2	242999642	242999642	+	RNA	DEL	T	T	-	rs112493497		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr2:242999642delT	ENST00000415434.1	+	0	310				AC093642.6_ENST00000446593.1_lincRNA																							CAGTGAACAATAGTCTTGCCC	0.532													3	3	---	---	---	---					
AC026188.1	0	broad.mit.edu	37	3	3378038	3378038	+	RNA	DEL	C	C	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:3378038delC	ENST00000455703.1	-	0	396																											TGATGGATATCCATTTTATAG	0.378													2	4	---	---	---	---					
AC027119.1	0	broad.mit.edu	37	3	6150999	6151000	+	RNA	DEL	GC	GC	-	rs58924838		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:6150999_6151000delGC	ENST00000425894.1	+	0	322																											gtgtgtgtgtgcgcgtgtgCGC	0.411													3	3	---	---	---	---					
GRM7-AS3	101927347	broad.mit.edu	37	3	6693198	6693198	+	RNA	DEL	T	T	-	rs5846460		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:6693198delT	ENST00000433639.1	+	0	194																											GGGGCTTTCATTTTTTTTTTT	0.363													3	4	---	---	---	---					
LMCD1-AS1	100288428	broad.mit.edu	37	3	8180298	8180299	+	RNA	DEL	AA	AA	-	rs57675650		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:8180298_8180299delAA	ENST00000446281.1	-	0	514																											accctgtcttaaaaaaaaaaaa	0.505													2	4	---	---	---	---					
AC018359.1	0	broad.mit.edu	37	3	34550330	34550330	+	RNA	DEL	A	A	-	rs71070196		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:34550330delA	ENST00000424786.1	+	0	570																											GTagatgaagaaacagattaa	0.333													3	4	---	---	---	---					
RP11-761N21.1	0	broad.mit.edu	37	3	40903006	40903006	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:40903006delA	ENST00000412811.1	+	0	265																											gatcccaaagaaaaaggcttt	0.328													2	4	---	---	---	---					
RP11-654C22.2	0	broad.mit.edu	37	3	72555281	72555282	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:72555281_72555282insT	ENST00000478745.1	-	0	582																											GATGAATGGGGTTTTTTAATGA	0.460													3	3	---	---	---	---					
RP11-359D24.1	0	broad.mit.edu	37	3	81926965	81926966	+	RNA	DEL	AC	AC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:81926965_81926966delAC	ENST00000471614.1	+	0	363																											acacacacagacacacacacac	0.396													3	6	---	---	---	---					
RP11-343D2.11	0	broad.mit.edu	37	3	97842499	97842499	+	RNA	DEL	A	A	-	rs35950698		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:97842499delA	ENST00000508964.1	-	0	94																											gcatacacctaaaaaaaacta	0.333													6	7	---	---	---	---					
MORC1	27136	broad.mit.edu	37	3	108822739	108822740	+	Frame_Shift_Ins	INS	-	-	C	rs142771630		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:108822739_108822740insC	ENST00000232603.5	-	4	261_262	c.179_180insG	c.(178-180)gttfs	p.V60fs	MORC1-AS1_ENST00000480826.1_RNA|MORC1_ENST00000483760.1_Frame_Shift_Ins_p.V60fs	NM_014429.3	NP_055244.3	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	60					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			breast(7)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(14)|lung(47)|ovary(3)|prostate(6)|skin(12)|upper_aerodigestive_tract(3)	105						ACAACATGAATCCCCCCTGCAG	0.376													7	344	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	118105544	118105544	+	RNA	DEL	A	A	-	rs63067061		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:118105544delA	ENST00000482142.1	-	0	232																											agaggagcagaaaaaaaaaaa	0.403													3	4	---	---	---	---					
RP11-649A16.1	0	broad.mit.edu	37	3	146700339	146700339	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:146700339delA	ENST00000473299.1	-	0	229																											gactccgtctaaaaaaaaaaa	0.433													3	5	---	---	---	---					
RP11-454C18.1	0	broad.mit.edu	37	3	151356084	151356085	+	RNA	INS	-	-	CTCT	rs71872055	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:151356084_151356085insCTCT	ENST00000492731.1	+	0	99																											acacacacacacactctctctc	0.470													4	6	---	---	---	---					
RP11-644C3.1	0	broad.mit.edu	37	3	176558227	176558228	+	RNA	INS	-	-	T	rs10711446	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:176558227_176558228insT	ENST00000428516.1	-	0	198																											CCTCCAGTGTATTTTTTTTTTC	0.386													4	3	---	---	---	---					
LINC00578	100505566	broad.mit.edu	37	3	177176336	177176336	+	RNA	DEL	T	T	-	rs76150919		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:177176336delT	ENST00000442937.1	+	0	190					NR_047568.1																						taaagacttgtttttttctta	0.303													2	4	---	---	---	---					
RP11-416O18.2	0	broad.mit.edu	37	3	181847623	181847623	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr3:181847623delA	ENST00000462382.1	+	0	314																											AATTTAGGGGAGGGCGAGGAG	0.473													2	4	---	---	---	---					
LOC101929095	101929095	broad.mit.edu	37	4	15136584	15136584	+	RNA	DEL	G	G	-	rs139351497		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:15136584delG	ENST00000502344.1	-	0	154				RP11-665G4.1_ENST00000513384.1_RNA																							tccacatggtggggggggggg	0.468													2	4	---	---	---	---					
RP11-608O21.1	0	broad.mit.edu	37	4	19740618	19740619	+	RNA	INS	-	-	G	rs143215191	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:19740618_19740619insG	ENST00000511431.1	+	0	288																											CTGCCAAACACGTGTGTGCATG	0.436													4	5	---	---	---	---					
RP11-123O22.1	0	broad.mit.edu	37	4	28483190	28483190	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:28483190delA	ENST00000509416.1	+	0	402																											TGAAAGTATTAATCCATACAA	0.348													2	4	---	---	---	---					
RASGEF1B	153020	broad.mit.edu	37	4	82569919	82569920	+	RNA	INS	-	-	GT	rs5859793		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:82569919_82569920insGT	ENST00000510780.1	-	0	390																											GTGGAATTtgcgtgtgtgtgtg	0.446													3	5	---	---	---	---					
RASGEF1B	153020	broad.mit.edu	37	4	82604519	82604520	+	RNA	INS	-	-	GTTT	rs140402965	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:82604519_82604520insGTTT	ENST00000510780.1	-	0	390																											tgttgtgtgtggttttttgttg	0.366													3	3	---	---	---	---					
LOC101929468	101929468	broad.mit.edu	37	4	105480679	105480680	+	RNA	INS	-	-	AT	rs143329842	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:105480679_105480680insAT	ENST00000500179.1	+	0	96				AC004063.1_ENST00000508358.1_lincRNA																							AAACTCATAAAATATGAAAAGT	0.342													2	4	---	---	---	---					
LOC101929468	101929468	broad.mit.edu	37	4	105556081	105556083	+	RNA	DEL	AAC	AAC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:105556081_105556083delAAC	ENST00000500179.1	+	0	96																											GGCTTGACAAaacaacaacaaca	0.384													3	5	---	---	---	---					
RP11-775H9.2	0	broad.mit.edu	37	4	137175440	137175441	+	RNA	INS	-	-	C	rs138719953	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:137175440_137175441insC	ENST00000513332.1	-	0	279																											aatacaaactgccatcagagaa	0.342													5	5	---	---	---	---					
RP11-98O2.1	0	broad.mit.edu	37	4	139717366	139717367	+	RNA	INS	-	-	T	rs149346611		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:139717366_139717367insT	ENST00000502606.1	+	0	144																											TTTATCCCTTGTTTTTTTTTTT	0.292													2	4	---	---	---	---					
RP11-342A1.1	0	broad.mit.edu	37	4	150069456	150069457	+	RNA	INS	-	-	TGTG	rs143988646	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:150069456_150069457insTGTG	ENST00000504755.1	-	0	232																											ATATAAATTGAtgtgtgtgtgt	0.371													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150518536	150518537	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:150518536_150518537insT	ENST00000511993.1	-	0	1113																											TGTTGTTGTGCtttttttcttt	0.371													2	4	---	---	---	---					
LINC00290	728081	broad.mit.edu	37	4	182072546	182072547	+	RNA	DEL	TG	TG	-	rs72062772		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:182072546_182072547delTG	ENST00000512487.1	-	0	201					NR_033918.1																						tgtgtgcctctgtgtgtgtgtg	0.381													2	4	---	---	---	---					
LOC90768	90768	broad.mit.edu	37	4	182900131	182900131	+	RNA	DEL	A	A	-	rs143851348		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:182900131delA	ENST00000507869.1	-	0	748				AC108142.1_ENST00000509012.1_RNA																							TGCTTAAGTGAAAAAAAAAAA	0.279													2	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190825682	190825683	+	RNA	INS	-	-	T	rs138468383		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:190825682_190825683insT	ENST00000511785.1	-	0	231																											AACTACTGTGATATTTTTTAGA	0.347													6	5	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190837068	190837068	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr4:190837068delA	ENST00000511785.1	-	0	231																											TTTAAATTAcaagcattttgc	0.378													3	4	---	---	---	---					
LINC01019	285577	broad.mit.edu	37	5	3516888	3516888	+	RNA	DEL	T	T	-	rs111254667		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:3516888delT	ENST00000505443.1	-	0	459					NR_033898.1																						CAGCAAACTGTTTTTTTTTTT	0.353													2	4	---	---	---	---					
RP11-445O3.2	0	broad.mit.edu	37	5	4503036	4503036	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:4503036delG	ENST00000507435.1	-	0	532																											aaaaaaaaaaggtcattggga	0.299													3	3	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	6958009	6958011	+	RNA	DEL	AAA	AAA	-	rs59852168		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:6958009_6958011delAAA	ENST00000512838.1	+	0	69																											caggataaagaaaatgtggcaca	0.374													4	9	---	---	---	---					
CTD-2215L10.1	0	broad.mit.edu	37	5	9017945	9017946	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:9017945_9017946insT	ENST00000506519.1	+	0	121																											TTGGACTGTACttttttttttt	0.470													2	4	---	---	---	---					
LOC285692	285692	broad.mit.edu	37	5	9797015	9797016	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:9797015_9797016insC	ENST00000511616.1	-	0	521					NR_027112.2																						TCCTATAACTACCCCCTGCTAA	0.426													2	4	---	---	---	---					
LOC646241	646241	broad.mit.edu	37	5	17861941	17861942	+	RNA	DEL	TG	TG	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:17861941_17861942delTG	ENST00000514771.1	+	0	216																											tgtgtgtgcatgtgtgtgtgtg	0.366													2	4	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21544716	21544717	+	RNA	DEL	AT	AT	-	rs145084669		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:21544716_21544717delAT	ENST00000607545.1	+	0	314					NR_027026.1																						GACCAGAACAATATAGTACAAT	0.366													3	4	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21547416	21547417	+	RNA	INS	-	-	G	rs112330227		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:21547416_21547417insG	ENST00000607545.1	+	0	314					NR_027026.1																						cttatttccaatatgttcacat	0.347													5	4	---	---	---	---					
CTD-2118P12.1	0	broad.mit.edu	37	5	29155516	29155517	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:29155516_29155517insA	ENST00000565798.2	+	0	198																											AACACAGTTTCAAGGAGTTCTC	0.307													2	4	---	---	---	---					
CTD-2116N24.1	0	broad.mit.edu	37	5	38053543	38053543	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:38053543delT	ENST00000513039.2	+	0	233																											aagggaGAGCTTATAAAATGG	0.438													2	4	---	---	---	---					
LIFR-AS1	100506495	broad.mit.edu	37	5	38602600	38602601	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:38602600_38602601insT	ENST00000500733.2	+	0	2540				LIFR-AS1_ENST00000500817.2_RNA	NR_037423.1|NR_103553.1																						cttctcttttcttttttttttc	0.401													2	4	---	---	---	---					
FGF10-AS1	101927075	broad.mit.edu	37	5	44403485	44403485	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:44403485delA	ENST00000502457.1	+	0	295																											aatagtggccaaaatttccgc	0.368													2	4	---	---	---	---					
CTC-340D7.1	0	broad.mit.edu	37	5	68146960	68146960	+	RNA	DEL	G	G	-	rs59671017		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:68146960delG	ENST00000503268.1	-	0	377																		p.0?(1)									catcatgtttgggtgcaatac	0.418													5	1	---	---	---	---					
CTC-340D7.1	0	broad.mit.edu	37	5	68150132	68150133	+	RNA	INS	-	-	T	rs72534295	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:68150132_68150133insT	ENST00000503268.1	-	0	377																		p.0?(1)									gggcatttaggttaattccatg	0.342													5	5	---	---	---	---					
RP11-60A8.1	0	broad.mit.edu	37	5	72562818	72562829	+	RNA	DEL	AGGGAGGGAGGG	AGGGAGGGAGGG	-	rs60982251		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:72562818_72562829delAGGGAGGGAGGG	ENST00000513379.1	+	0	328																											aaaggaaggaagggagggagggagggagggag	0.486													3	3	---	---	---	---					
MEF2C-AS1	101929423	broad.mit.edu	37	5	88567817	88567818	+	RNA	INS	-	-	AC	rs139892924		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:88567817_88567818insAC	ENST00000512585.1	+	0	319				MEF2C-AS1_ENST00000514092.1_RNA																							AGAAGACTTGAacacacacaca	0.361													2	4	---	---	---	---					
MEF2C-AS1	101929423	broad.mit.edu	37	5	88653026	88653026	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:88653026delT	ENST00000514092.1	+	0	244																											gatagagtgattatattaaca	0.279													2	4	---	---	---	---					
CTC-529L17.1	0	broad.mit.edu	37	5	91999530	91999530	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:91999530delA	ENST00000512237.1	+	0	89																											tacagctgataaaatgggctg	0.413													4	2	---	---	---	---					
CTD-2337A12.1	0	broad.mit.edu	37	5	95384369	95384369	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:95384369delT	ENST00000511775.1	+	0	35				CTD-2337A12.1_ENST00000502645.2_RNA																							CTCTTCCTGATTTTTTTTTTC	0.423													2	4	---	---	---	---					
LINC00492	100861468	broad.mit.edu	37	5	101918451	101918452	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:101918451_101918452insG	ENST00000504436.1	+	0	199																											agaagtcgagtggggggaatga	0.436													4	5	---	---	---	---					
RP11-492A10.1	0	broad.mit.edu	37	5	113976051	113976051	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:113976051delA	ENST00000514115.1	-	0	331																											caacaaggggaaaaaaatgta	0.289													2	4	---	---	---	---					
LINC01183	728586	broad.mit.edu	37	5	127131002	127131003	+	RNA	DEL	AC	AC	-	rs145399757	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:127131002_127131003delAC	ENST00000514853.2	+	0	278																											aaaaaaaaaaaCAATTTGGTAA	0.371													3	4	---	---	---	---					
CTD-2050E21.1	0	broad.mit.edu	37	5	142899421	142899421	+	RNA	DEL	C	C	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:142899421delC	ENST00000340585.6	-	0	437																											ttttcttcaaccaccactatc	0.289													2	4	---	---	---	---					
CTC-436K13.1	0	broad.mit.edu	37	5	157608704	157608705	+	RNA	INS	-	-	TCT	rs35982687	byFrequency	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:157608704_157608705insTCT	ENST00000522975.1	+	0	141																											AAGTATATCCATCTTCTATCCA	0.386													4	5	---	---	---	---					
LOC102546299	102546299	broad.mit.edu	37	5	163929800	163929801	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr5:163929800_163929801insA	ENST00000486913.3	+	0	158				CTC-340A15.2_ENST00000519570.1_RNA|CTC-340A15.2_ENST00000524297.1_RNA|CTC-340A15.2_ENST00000522646.1_RNA|CTC-340A15.2_ENST00000522303.1_RNA|CTC-340A15.2_ENST00000522686.1_RNA|CTC-340A15.2_ENST00000523704.1_RNA|CTC-340A15.2_ENST00000517508.1_RNA|CTC-340A15.2_ENST00000519327.1_RNA|CTC-340A15.2_ENST00000522762.1_RNA																							cagaatatgacctttttttgga	0.376													2	4	---	---	---	---					
RP1-209A6.1	0	broad.mit.edu	37	6	22985689	22985690	+	RNA	INS	-	-	A	rs78724921		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr6:22985689_22985690insA	ENST00000420572.2	-	0	197																											gactccatctcaaaaaaaaaaa	0.426													4	7	---	---	---	---					
ZNRD1-AS1	80862	broad.mit.edu	37	6	30024686	30024687	+	RNA	INS	-	-	A	rs145679846	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr6:30024686_30024687insA	ENST00000452229.1	-	0	3495_3496				ZNRD1-AS1_ENST00000376797.3_RNA|ZNRD1-AS1_ENST00000422224.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000437417.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA|ZNRD1-AS1_ENST00000421692.1_RNA|ZNRD1-AS1_ENST00000431012.1_RNA																							ACGAGCATTTGAAAAAAAAAAG	0.312													2	4	---	---	---	---					
RUNX2	860	broad.mit.edu	37	6	45296446	45296446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr6:45296446delA	ENST00000352853.5	+	2	187	c.187delA	c.(187-189)aafs	p.K65fs	RUNX2_ENST00000483243.1_3'UTR|RUNX2_ENST00000465038.2_5'UTR|SUPT3H_ENST00000371459.1_Intron|SUPT3H_ENST00000371460.1_Intron|SUPT3H_ENST00000306867.5_Intron|SUPT3H_ENST00000459689.1_Intron|RUNX2_ENST00000541979.1_Frame_Shift_Del_p.K65fs|RUNX2_ENST00000371438.1_5'UTR			Q13950	RUNX2_HUMAN	runt-related transcription factor 2	0	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			breast(2)|endometrium(2)|kidney(1)|large_intestine(5)|liver(1)|lung(18)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	34						GTTCTATCTGAAAAAAAAAGG	0.388													7	140	---	---	---	---					
UFL1-AS1	100861530	broad.mit.edu	37	6	96918792	96918793	+	RNA	INS	-	-	ACATAC	rs66919588	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr6:96918792_96918793insACATAC	ENST00000430796.1	-	0	110																											catacacatatacatacacata	0.371													3	3	---	---	---	---					
AC073316.1	0	broad.mit.edu	37	7	3337370	3337371	+	RNA	INS	-	-	AGA	rs79393726	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:3337370_3337371insAGA	ENST00000437354.1	-	0	224																											ggaggaggaggagaagaagaag	0.436													3	4	---	---	---	---					
LOC101927668	101927668	broad.mit.edu	37	7	20023961	20023962	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:20023961_20023962insT	ENST00000449573.1	-	0	203																											tcctgtgcccctcccccgcagt	0.535													2	4	---	---	---	---					
AC092657.2	0	broad.mit.edu	37	7	46352049	46352050	+	RNA	INS	-	-	G	rs149834122	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:46352049_46352050insG	ENST00000436266.1	+	0	49																											gaaaaggaagagggggggttgg	0.416													2	4	---	---	---	---					
AC004870.3	0	broad.mit.edu	37	7	47099268	47099269	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:47099268_47099269insT	ENST00000412996.1	-	0	52																											cttgaatatggttttttgttgt	0.396													2	4	---	---	---	---					
AC010971.1	0	broad.mit.edu	37	7	49276394	49276395	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:49276394_49276395insT	ENST00000440455.1	+	0	198																											gatggataagctttttgatgtg	0.342													2	4	---	---	---	---					
RP4-724E13.2	0	broad.mit.edu	37	7	50953930	50953930	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:50953930delT	ENST00000420449.1	+	0	24																											tgggttagcatttccaaaatt	0.318													2	4	---	---	---	---					
LINC01446	401337	broad.mit.edu	37	7	53831470	53831471	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:53831470_53831471insG	ENST00000380970.2	-	0	1381					NR_038371.1																						CTTTCTTTTCTGGGGGGGTTGG	0.470													3	4	---	---	---	---					
RP11-368M16.3	0	broad.mit.edu	37	7	57698805	57698817	+	RNA	DEL	GACTTATACCCAG	GACTTATACCCAG	-	rs113395817		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:57698805_57698817delGACTTATACCCAG	ENST00000605139.1	-	0	416																											GGAACTTTGAGACTTATACCCAGGGCTGAGATG	0.484													4	9	---	---	---	---					
RP5-945F2.3	0	broad.mit.edu	37	7	67720494	67720494	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:67720494delT	ENST00000446187.1	-	0	179																											ctcctcctcctttttttctcc	0.498													6	4	---	---	---	---					
AC002127.4	0	broad.mit.edu	37	7	88351064	88351064	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:88351064delA	ENST00000444032.1	+	0	65																											tttgtgctttaaaaaattact	0.323													2	4	---	---	---	---					
MTERF1	7978	broad.mit.edu	37	7	91493869	91493869	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:91493869delA	ENST00000454222.1	-	0	93																											accctgtctcaaaaaaaaaaa	0.398													3	3	---	---	---	---					
LOC349160	349160	broad.mit.edu	37	7	136538690	136538690	+	RNA	DEL	T	T	-	rs11335174		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:136538690delT	ENST00000439694.1	-	0	343				AC009264.1_ENST00000586239.1_RNA|AC009264.1_ENST00000597642.1_RNA|AC009264.1_ENST00000592183.1_RNA|AC009264.1_ENST00000598184.1_RNA|AC009264.1_ENST00000593789.1_RNA																							atttttattcttttttttttt	0.408													6	7	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149515189	149515189	+	RNA	DEL	A	A	-	rs112122477		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:149515189delA	ENST00000378016.2	+	0	11577							A2VEC9	SSPO_HUMAN	SCO-spondin						cell adhesion	extracellular space	peptidase inhibitor activity					Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GACCTCGAGTAACTGCCCCAG	0.667													4	3	---	---	---	---					
C7orf13	129790	broad.mit.edu	37	7	156289634	156289635	+	RNA	INS	-	-	AC	rs72190644		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr7:156289634_156289635insAC	ENST00000447933.1	-	0	300																											CACGTGTACTTacacacacaca	0.391													3	4	---	---	---	---					
LOC157273	157273	broad.mit.edu	37	8	9267980	9267983	+	RNA	DEL	AGAG	AGAG	-	rs113597798		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:9267980_9267983delAGAG	ENST00000521842.1	-	0	65																											AATTCTAAACAGAGAGAGAGTGAG	0.431													4	6	---	---	---	---					
RP11-624C23.1	0	broad.mit.edu	37	8	24505501	24505501	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:24505501delT	ENST00000519689.1	-	0	184																											AAAGCATAGCTTTAATTAATA	0.318													4	2	---	---	---	---					
RP11-317N12.1	0	broad.mit.edu	37	8	33884248	33884248	+	RNA	DEL	C	C	-	rs34032823		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:33884248delC	ENST00000523336.1	+	0	99																											tgataaacttctttatctctg	0.403													3	3	---	---	---	---					
RP11-317N12.1	0	broad.mit.edu	37	8	33890943	33890944	+	RNA	DEL	TG	TG	-	rs72093580		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:33890943_33890944delTG	ENST00000523336.1	+	0	99																											GGGgtgtgtttgtgtgtgtgtg	0.347													3	5	---	---	---	---					
RP11-431M3.1	0	broad.mit.edu	37	8	34041113	34041113	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:34041113delT	ENST00000518217.1	+	0	128																											ctgatttaaatgttaatcaca	0.358													3	4	---	---	---	---					
RP11-495O10.1	0	broad.mit.edu	37	8	38558636	38558637	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:38558636_38558637insA	ENST00000521511.1	-	0	325																											CTGGACAGACGAAAAAAACAAA	0.436													2	4	---	---	---	---					
ADAM3A	1587	broad.mit.edu	37	8	39371865	39371865	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:39371865delT	ENST00000490268.2	-	0	96					NR_073423.1																						ACTCAGATCATTAATCATTAG	0.259													2	4	---	---	---	---					
RP11-246K15.1	0	broad.mit.edu	37	8	58449735	58449736	+	RNA	INS	-	-	CA	rs58097252	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:58449735_58449736insCA	ENST00000520370.1	+	0	92																											ATGTCACAACGCACACACACAC	0.500													2	4	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	65252867	65252868	+	RNA	INS	-	-	A	rs35872282		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:65252867_65252868insA	ENST00000521958.1	-	0	218				RP11-32K4.1_ENST00000523191.1_RNA																							aaaaaaaatttaaaaaaaaaaa	0.351													2	4	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	65275781	65275782	+	RNA	INS	-	-	CA			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:65275781_65275782insCA	ENST00000521958.1	-	0	218				RP11-32K4.1_ENST00000523191.1_RNA																							Ccatacacactcacacacacaa	0.421													2	4	---	---	---	---					
KCNB2	9312	broad.mit.edu	37	8	73480091	73480092	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:73480091_73480092insG	ENST00000523207.1	+	2	710_711	c.122_123insG	c.(121-123)gggfs	p.G41fs		NM_004770.2	NP_004761.2	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related subfamily, member 2	41					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(20)|liver(2)|lung(31)|ovary(2)|pancreas(3)|prostate(2)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	85	Breast(64;0.137)		Epithelial(68;0.105)			AAGATCAATGTGGGGGGCCTCA	0.564													7	617	---	---	---	---					
LOC101926926	101926926	broad.mit.edu	37	8	74254435	74254438	+	RNA	DEL	TCTA	TCTA	-	rs5892408	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:74254435_74254438delTCTA	ENST00000514599.1	-	0	246				RP11-434I12.2_ENST00000517475.1_RNA																							tatcggtctgtctatctatctatc	0.319													5	6	---	---	---	---					
LINC01111	101926978	broad.mit.edu	37	8	77397312	77397313	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:77397312_77397313insA	ENST00000518732.1	+	0	332																											AAAATGCTGGGAAAAAAAAAAA	0.337													2	4	---	---	---	---					
LINC01111	101926978	broad.mit.edu	37	8	77399222	77399223	+	RNA	DEL	AT	AT	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:77399222_77399223delAT	ENST00000518732.1	+	0	332																											TTAAAAGAAAATAGTCATCCAT	0.307													5	10	---	---	---	---					
ZFHX4-AS1	100192378	broad.mit.edu	37	8	77552081	77552083	+	RNA	DEL	TAA	TAA	-	rs149141543		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:77552081_77552083delTAA	ENST00000518143.1	-	0	434				ZFHX4-AS1_ENST00000522961.1_RNA	NR_024360.1																						gagaacaaactaatacaccctcc	0.379													6	3	---	---	---	---					
LOC102724874	102724874	broad.mit.edu	37	8	78389520	78389521	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:78389520_78389521insT	ENST00000518706.2	+	0	151																											gacaatgtaagttttttttttt	0.337													2	4	---	---	---	---					
LOC101927040	101927040	broad.mit.edu	37	8	80721068	80721069	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:80721068_80721069insA	ENST00000502766.2	-	0	349																											gactccatttcaaaaaaaagaa	0.450													4	4	---	---	---	---					
RP11-157I4.4	0	broad.mit.edu	37	8	82386872	82386872	+	RNA	DEL	T	T	-	rs35284601		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:82386872delT	ENST00000524085.2	+	0	298																											ttgtgtgtaattttttttttt	0.249													3	2	---	---	---	---					
RP11-120I21.2	0	broad.mit.edu	37	8	84973066	84973066	+	RNA	DEL	A	A	-	rs147325124		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:84973066delA	ENST00000523678.1	+	0	184																											acaaacaaggaaaaaaaaaac	0.338													2	4	---	---	---	---					
RP11-386D6.1	0	broad.mit.edu	37	8	87756434	87756435	+	RNA	DEL	TG	TG	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:87756434_87756435delTG	ENST00000519041.1	+	0	448																											ACTCTGCCTCTGTGTGTGTGTG	0.396													3	3	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89474994	89474994	+	RNA	DEL	T	T	-	rs111924296		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:89474994delT	ENST00000521433.1	+	0	179				RP11-586K2.1_ENST00000523254.1_RNA																							gttttgcaaattttttttctg	0.254													2	4	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89519428	89519429	+	RNA	INS	-	-	A	rs149585996	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:89519428_89519429insA	ENST00000521433.1	+	0	179				RP11-586K2.1_ENST00000523254.1_RNA																							aatggatacacaaaaaaacaga	0.257													3	3	---	---	---	---					
LINC00534	100874052	broad.mit.edu	37	8	91270981	91270982	+	RNA	INS	-	-	A	rs150190231	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:91270981_91270982insA	ENST00000523406.1	+	0	300					NR_051989.1																						TTAAGAAAATGAAAAAAAAAAc	0.337													2	4	---	---	---	---					
AB015752.3	0	broad.mit.edu	37	8	91581557	91581558	+	RNA	INS	-	-	T	rs112859468	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:91581557_91581558insT	ENST00000521975.1	-	0	134																											gtaagccttgctttttttttta	0.307													2	4	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92903890	92903891	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:92903890_92903891insA	ENST00000518416.1	-	0	180																											tgacggacttcaaaaatggcgc	0.520													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94577099	94577100	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:94577099_94577100insC	ENST00000501400.1	-	0	948					NR_033858.1																						CTTTCGAAAAACCAAAAATGCG	0.297													2	4	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96457506	96457506	+	RNA	DEL	G	G	-	rs112601790		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:96457506delG	ENST00000521905.1	+	0	281																											Ctgtttttttgtttttttttt	0.453													2	4	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96505388	96505389	+	RNA	INS	-	-	ACACAC	rs5893337	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:96505388_96505389insACACAC	ENST00000521905.1	+	0	281																											TGGTGGCCTGTacacacacaca	0.490													4	7	---	---	---	---					
KB-1991G8.1	0	broad.mit.edu	37	8	101357291	101357292	+	RNA	INS	-	-	A	rs35269620	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:101357291_101357292insA	ENST00000519566.1	+	0	121																											aaaccagatgcaaaggctctgg	0.337													2	4	---	---	---	---					
KB-1930G5.4	0	broad.mit.edu	37	8	102437337	102437338	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:102437337_102437338insT	ENST00000519793.1	-	0	242																											AGCCATTTCCAttttttttttt	0.446													2	4	---	---	---	---					
CASC8	727677	broad.mit.edu	37	8	128441227	128441227	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:128441227delT	ENST00000502082.1	-	0	1041																											GATTTGAGACttttttttttt	0.473													6	5	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130504998	130504999	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:130504998_130504999insG	ENST00000446592.3	-	0	312																											tgtcagggggtggggggaaagg	0.446													3	5	---	---	---	---					
LOC401478	401478	broad.mit.edu	37	8	138915689	138915689	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr8:138915689delA	ENST00000518973.1	-	0	514				RP11-238K6.2_ENST00000519652.1_lincRNA																							TATGATGGCTAAAACCTGTCC	0.418													2	4	---	---	---	---					
RP11-536O18.1	0	broad.mit.edu	37	9	13468689	13468689	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr9:13468689delG	ENST00000428006.2	+	0	103																											ACATCTCACAGGGATTTCTGC	0.383													2	4	---	---	---	---					
LINC01239	441389	broad.mit.edu	37	9	22733598	22733599	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr9:22733598_22733599insT	ENST00000436786.1	+	0	524					NR_038977.1																						agtcattacaattttttgagat	0.272													2	4	---	---	---	---					
B4GALT1-AS1	101929639	broad.mit.edu	37	9	33175841	33175842	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr9:33175841_33175842insA	ENST00000442432.1	+	0	72				RP11-326F20.5_ENST00000426270.1_RNA																							actatcgacacatttctcagaa	0.366													2	4	---	---	---	---					
LOC440896	440896	broad.mit.edu	37	9	70940393	70940394	+	RNA	DEL	GA	GA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr9:70940393_70940394delGA	ENST00000429953.2	+	0	1559																											tgatgataaggagagagtctgc	0.411													2	4	---	---	---	---					
LOC101928438	101928438	broad.mit.edu	37	9	102355551	102355552	+	RNA	INS	-	-	A	rs77932548		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr9:102355551_102355552insA	ENST00000427039.1	-	0	417																											GGATCAATGGTAAAAAAAAAAA	0.277													3	3	---	---	---	---					
RP11-281A20.1	0	broad.mit.edu	37	9	120612880	120612881	+	RNA	INS	-	-	GT	rs72048598		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr9:120612880_120612881insGT	ENST00000449730.1	-	0	336				RP11-281A20.2_ENST00000421509.2_lincRNA																							TTTGTTTTAACgtgtgtgtgtg	0.406													2	4	---	---	---	---					
RP11-543F8.2	0	broad.mit.edu	37	10	8470658	8470661	+	RNA	DEL	AAAC	AAAC	-	rs57064508		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr10:8470658_8470661delAAAC	ENST00000413286.1	+	0	141																											AGTCATGGGGaaacaaacaaacaa	0.407													2	4	---	---	---	---					
RP11-168P8.5	0	broad.mit.edu	37	10	44403343	44403343	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr10:44403343delA	ENST00000438454.1	-	0	34																											CAACAGCCACAAAAAAATGCA	0.393													2	4	---	---	---	---					
RP11-168P8.5	0	broad.mit.edu	37	10	44406743	44406744	+	RNA	INS	-	-	A	rs141547623	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr10:44406743_44406744insA	ENST00000438454.1	-	0	34																											aaataaatgtgaaaaatagtaa	0.312													5	1	---	---	---	---					
LINC01515	101928913	broad.mit.edu	37	10	67366536	67366536	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr10:67366536delT	ENST00000433152.3	+	0	594																											TCTTCCTTCCTTGTGAAGTTA	0.363													2	4	---	---	---	---					
RP11-655H13.2	0	broad.mit.edu	37	10	110559288	110559288	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr10:110559288delG	ENST00000421481.1	+	0	69																											CACCATGCCTGGTGCATAGAT	0.323													2	4	---	---	---	---					
RP11-467K18.2	0	broad.mit.edu	37	11	9032774	9032775	+	RNA	DEL	AC	AC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:9032774_9032775delAC	ENST00000531592.1	+	0	382																											TCCCTGCAAAacacacacacac	0.347													2	4	---	---	---	---					
RP11-98J9.2	0	broad.mit.edu	37	11	13890520	13890521	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:13890520_13890521insA	ENST00000530492.1	-	0	78				RP11-98J9.3_ENST00000525381.1_lincRNA																							CAAATAGAATGAAAAAAAACCA	0.371													2	4	---	---	---	---					
RP11-396O20.2	0	broad.mit.edu	37	11	15740431	15740432	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:15740431_15740432insC	ENST00000524613.1	-	0	187																											GTTTGCCAGTTCCCCCCAATTC	0.480													2	4	---	---	---	---					
RP11-159D8.1	0	broad.mit.edu	37	11	37972611	37972612	+	RNA	INS	-	-	A	rs57549100		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:37972611_37972612insA	ENST00000532562.1	+	0	163																											atcaaagaggcaaaaaaaataa	0.287													2	4	---	---	---	---					
CTD-2572N17.1	0	broad.mit.edu	37	11	42264449	42264457	+	RNA	DEL	TGATGTGTC	TGATGTGTC	-	rs11280351		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:42264449_42264457delTGATGTGTC	ENST00000527757.1	-	0	99																											GGAGGAAAATTGATGTGTCTGATGTGTCT	0.411													3	3	---	---	---	---					
LINC00301	283197	broad.mit.edu	37	11	60430926	60430926	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:60430926delT	ENST00000320202.4	+	0	612					NR_026946.1																						TTTGTTTGAATTttttttttt	0.318													2	4	---	---	---	---					
LOC338694	338694	broad.mit.edu	37	11	68932163	68932165	+	RNA	DEL	AAG	AAG	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:68932163_68932165delAAG	ENST00000562772.1	-	0	477																											CCGTGGAGCCAAGAAGACACAGA	0.581													4	2	---	---	---	---					
FLJ42102	399923	broad.mit.edu	37	11	71128520	71128532	+	RNA	DEL	AAAAAAAAAAAAA	AAAAAAAAAAAAA	-	rs72355858		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:71128520_71128532delAAAAAAAAAAAAA	ENST00000331301.4	-	0	125					NR_038862.1																						actctatctcaaaaaaaaaaaaaaaaaaaaagt	0.455													2	4	---	---	---	---					
LOC101928989	101928989	broad.mit.edu	37	11	82090800	82090800	+	RNA	DEL	T	T	-	rs35474992		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:82090800delT	ENST00000500502.1	-	0	235																											tgagagtgggtaatttataaa	0.378													2	4	---	---	---	---					
RP11-708B6.2	0	broad.mit.edu	37	11	109248368	109248368	+	RNA	DEL	C	C	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:109248368delC	ENST00000532992.1	-	0	427																											AGGTGACACTCCACAGAGGAA	0.443													2	4	---	---	---	---					
LOC101928823	101928823	broad.mit.edu	37	11	112332121	112332121	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:112332121delT	ENST00000528496.1	+	0	231																											TGATTTTATGTTTTTTTTTTT	0.378													5	5	---	---	---	---					
TMPRSS4-AS1	100526771	broad.mit.edu	37	11	117928164	117928165	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:117928164_117928165insG	ENST00000606951.1	-	0	195				TMPRSS4-AS1_ENST00000527695.1_RNA|TMPRSS4-AS1_ENST00000527329.1_RNA	NR_038318.1																						AGAGCCACTGTGGGGAAAGAAC	0.579													2	4	---	---	---	---					
MIR100HG	399959	broad.mit.edu	37	11	121971368	121971368	+	RNA	DEL	C	C	-	rs3028409		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:121971368delC	ENST00000531381.1	-	0	732																											TAAAAAAAGGCGGGGGGGGGG	0.468													3	6	---	---	---	---					
KRT18P59	399965	broad.mit.edu	37	11	124995233	124995233	+	RNA	DEL	A	A	-	rs61501775		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:124995233delA	ENST00000534728.1	+	0	1894																											AGTGGGTCAGATAGACTTCTA	0.453													6	0	---	---	---	---					
AP002856.5	0	broad.mit.edu	37	11	131188563	131188564	+	RNA	INS	-	-	A	rs79572859		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:131188563_131188564insA	ENST00000606885.1	+	0	146																											agtacaataataaaaaaaaaaA	0.342													2	4	---	---	---	---					
LOC283177	283177	broad.mit.edu	37	11	134356024	134356025	+	RNA	DEL	CT	CT	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr11:134356024_134356025delCT	ENST00000528482.2	+	0	1894_1895																											AGAAGAAAGACTCTGCTTCTTG	0.535													4	2	---	---	---	---					
RP11-1038A11.3	0	broad.mit.edu	37	12	5478856	5478857	+	RNA	DEL	AC	AC	-	rs151255607		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:5478856_5478857delAC	ENST00000537192.1	+	0	351																											attgtgaataacacacacacac	0.302													2	4	---	---	---	---					
RP11-871F6.3	0	broad.mit.edu	37	12	17722010	17722010	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:17722010delA	ENST00000540399.1	-	0	763																											ATTTATTAATAAAGAATGTCA	0.289													5	3	---	---	---	---					
RP11-283G6.4	0	broad.mit.edu	37	12	26454650	26454651	+	RNA	INS	-	-	T	rs151152744		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:26454650_26454651insT	ENST00000540392.1	-	0	130				RP11-283G6.5_ENST00000540625.1_RNA																							TATGTATACAAttttttttttt	0.421													4	7	---	---	---	---					
DDX11-AS1	100506660	broad.mit.edu	37	12	31211622	31211622	+	RNA	DEL	C	C	-	rs113453661		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:31211622delC	ENST00000500527.1	-	0	764				DDX11-AS1_ENST00000535870.1_RNA	NR_038927.1																						aaaaaaaaaaccaaaaaaaca	0.403													3	5	---	---	---	---					
RP11-25I15.3	0	broad.mit.edu	37	12	43089118	43089118	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:43089118delG	ENST00000550177.1	+	0	165																											acatggagcagggatatgaca	0.493													2	4	---	---	---	---					
TARBP2	6895	broad.mit.edu	37	12	53896875	53896876	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:53896875_53896876insG	ENST00000266987.2	+	3	771_772	c.288_289insG	c.(286-291)aaggggfs	p.KG96fs	TARBP2_ENST00000456234.2_Frame_Shift_Ins_p.KG75fs|TARBP2_ENST00000549028.1_3'UTR|TARBP2_ENST00000394357.2_Frame_Shift_Ins_p.KG75fs|TARBP2_ENST00000552857.1_Intron	NM_134323.1	NP_599150.1	Q15633	TRBP2_HUMAN	TAR (HIV-1) RNA binding protein 2	96	DRBM 1.|Sufficient for interaction with PRKRA.				miRNA loading onto RISC involved in gene silencing by miRNA|negative regulation of defense response to virus by host|negative regulation of protein kinase activity|positive regulation of viral genome replication|pre-miRNA processing|production of siRNA involved in RNA interference|regulation of transcription from RNA polymerase II promoter|regulation of translation|regulation of viral transcription|targeting of mRNA for destruction involved in RNA interference	cytosol|nucleus|perinuclear region of cytoplasm|RNA-induced silencing complex	double-stranded RNA binding|protein homodimerization activity|siRNA binding			central_nervous_system(1)|endometrium(2)|large_intestine(4)|lung(3)	10						AACACCTCAAAGGGGGGAGCAT	0.634													2	4	---	---	---	---					
LOC100507065	100507065	broad.mit.edu	37	12	65961014	65961015	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:65961014_65961015insA	ENST00000546198.1	-	0	391																											gaagtagagataaaaaaaaaac	0.322													2	4	---	---	---	---					
RP11-588H23.3	0	broad.mit.edu	37	12	70882864	70882865	+	RNA	INS	-	-	T	rs34936426		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:70882864_70882865insT	ENST00000548687.1	+	0	243				RP11-588H23.3_ENST00000548924.1_RNA|RP11-588H23.3_ENST00000549359.1_RNA|RP11-588H23.3_ENST00000551438.1_RNA|RP11-588H23.3_ENST00000549616.1_RNA|RP11-588H23.3_ENST00000549460.1_RNA																							agcaagaataattttttttttt	0.342													2	4	---	---	---	---					
RP11-314D7.4	0	broad.mit.edu	37	12	73768133	73768134	+	RNA	DEL	TC	TC	-	rs10549441		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:73768133_73768134delTC	ENST00000549058.1	-	0	132																											actttttgtttctgagttttga	0.356													3	4	---	---	---	---					
RP11-114H23.1	0	broad.mit.edu	37	12	76178119	76178120	+	RNA	INS	-	-	A	rs149087109	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:76178119_76178120insA	ENST00000552856.1	-	0	295																											actccagccccctccaggacac	0.441													3	3	---	---	---	---					
RP11-1060G2.1	0	broad.mit.edu	37	12	94321719	94321719	+	RNA	DEL	A	A	-	rs71433900		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:94321719delA	ENST00000550687.1	-	0	59																											actctgtctcaaaaaaaaaaa	0.418													2	4	---	---	---	---					
RP11-536G4.2	0	broad.mit.edu	37	12	96237229	96237229	+	RNA	DEL	T	T	-	rs150092518		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:96237229delT	ENST00000553194.1	-	0	86																											tctgtcttgattttttttttt	0.478													3	4	---	---	---	---					
RP11-690J15.1	0	broad.mit.edu	37	12	98508467	98508467	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:98508467delA	ENST00000548344.1	-	0	160																											actccatctcaaaaaaaCACT	0.478													3	6	---	---	---	---					
RP11-143E21.6	0	broad.mit.edu	37	12	130742274	130742275	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:130742274_130742275insG	ENST00000563922.1	+	0	340																											CCACGGGGTTTGGGGGTGCAGC	0.520													2	4	---	---	---	---					
LINC01257	116437	broad.mit.edu	37	12	131663944	131663945	+	RNA	INS	-	-	TACC	rs71453103	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr12:131663944_131663945insTACC	ENST00000376678.2	+	0	220					NR_026670.2																						gactggaacagtaccgcacatg	0.327													3	3	---	---	---	---					
LINC00402	100507612	broad.mit.edu	37	13	74830826	74830837	+	RNA	DEL	TGTGTGTGTGTG	TGTGTGTGTGTG	-	rs72176130		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr13:74830826_74830837delTGTGTGTGTGTG	ENST00000419499.1	+	0	296																											GAGTAGAGCTtgtgtgtgtgtgtgtgtgtgtg	0.434													2	4	---	---	---	---					
RP11-244H18.3	0	broad.mit.edu	37	14	20108142	20108142	+	RNA	DEL	C	C	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:20108142delC	ENST00000551144.1	+	0	438				RP11-597A11.1_ENST00000548261.1_RNA																							ATGATGCCCACGTGAGCTGGC	0.408													3	5	---	---	---	---					
RP11-116N8.1	0	broad.mit.edu	37	14	36420854	36420857	+	RNA	DEL	CAAA	CAAA	-	rs72006622		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:36420854_36420857delCAAA	ENST00000550089.1	+	0	242																											gactccgtctcaaacaaacaaaca	0.407													2	4	---	---	---	---					
LINC00609	101101773	broad.mit.edu	37	14	36561125	36561125	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:36561125delA	ENST00000546508.1	+	0	259					NR_073454.1																						TAGCAATGCTAAAAAATGACA	0.328													2	4	---	---	---	---					
RP11-99L13.1	0	broad.mit.edu	37	14	44935091	44935091	+	RNA	DEL	T	T	-	rs35173099		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:44935091delT	ENST00000556472.1	-	0	231																											TTTAACTCTCTTTTTTTTATT	0.269													3	6	---	---	---	---					
LINC00871	100506412	broad.mit.edu	37	14	46560886	46560887	+	RNA	DEL	AG	AG	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:46560886_46560887delAG	ENST00000556886.1	+	0	58					NR_102701.1																						CACACCAAACAGAGGATGACAA	0.376													5	8	---	---	---	---					
CTD-2277K2.1	0	broad.mit.edu	37	14	62373506	62373509	+	RNA	DEL	TCCA	TCCA	-	rs28538514	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:62373506_62373509delTCCA	ENST00000554436.1	+	0	482																											cgtccgtccgtccatccatccatc	0.525													4	5	---	---	---	---					
LOC100506411	100506411	broad.mit.edu	37	14	71280446	71280447	+	RNA	INS	-	-	A	rs72231853		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:71280446_71280447insA	ENST00000557691.1	+	0	336																											ccctctctctcaaaaaaaaaaa	0.480													3	4	---	---	---	---					
RP6-114E22.1	0	broad.mit.edu	37	14	72356762	72356763	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:72356762_72356763insC	ENST00000555581.1	+	0	131																											gctctctgaggcccccccagaa	0.446													2	4	---	---	---	---					
RP1-240K6.3	0	broad.mit.edu	37	14	73943262	73943262	+	RNA	DEL	C	C	-	rs11345432		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:73943262delC	ENST00000515412.2	+	0	486																											AGGACAAGGGCCATTTCTTCT	0.463													3	3	---	---	---	---					
RP11-187O7.3	0	broad.mit.edu	37	14	77143687	77143688	+	RNA	INS	-	-	T	rs11375966	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:77143687_77143688insT	ENST00000554926.1	-	0	194																											aacccctcgtattgcaggtggg	0.480													3	5	---	---	---	---					
RP11-187O7.3	0	broad.mit.edu	37	14	77162203	77162206	+	RNA	DEL	ATAC	ATAC	-	rs10580851		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:77162203_77162206delATAC	ENST00000554926.1	-	0	194																											TCATATCCTTATACATACATGCCC	0.505													5	1	---	---	---	---					
LOC100129345	100129345	broad.mit.edu	37	14	98110769	98110770	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr14:98110769_98110770insT	ENST00000355909.3	-	0	625					NR_033943.1																						ATACAATTAGGTTTTTTGACTC	0.366													2	4	---	---	---	---					
HERC2P3	283755	broad.mit.edu	37	15	20608792	20608794	+	RNA	DEL	TTC	TTC	-	rs71399679		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:20608792_20608794delTTC	ENST00000428453.1	-	0	4041																				central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(1)|lung(14)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	35						aatttgttaattcttttgtttct	0.261													2	4	---	---	---	---					
LOC101928227	101928227	broad.mit.edu	37	15	38314403	38314404	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:38314403_38314404insA	ENST00000558081.2	+	0	155																											gatgtccacacaaaaacctgca	0.386													2	4	---	---	---	---					
RP11-275I4.2	0	broad.mit.edu	37	15	38968783	38968784	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:38968783_38968784insA	ENST00000557946.1	+	0	287																											caattggaaggaaaaaaaaaac	0.292													2	4	---	---	---	---					
RP11-627D16.1	0	broad.mit.edu	37	15	46986711	46986713	+	RNA	DEL	ATC	ATC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:46986711_46986713delATC	ENST00000559148.1	+	0	335																											TGAAGTCTTAATCATCTTTAAAT	0.355													3	4	---	---	---	---					
RP11-648K4.2	0	broad.mit.edu	37	15	88148745	88148745	+	RNA	DEL	A	A	-	rs11305987		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:88148745delA	ENST00000560439.1	-	0	80																											AATGGGTTTTAAAAATTTACA	0.348													4	3	---	---	---	---					
RP11-429B14.1	0	broad.mit.edu	37	15	90088314	90088325	+	RNA	DEL	CTCCTTCTCCTC	CTCCTTCTCCTC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:90088314_90088325delCTCCTTCTCCTC	ENST00000559041.1	+	0	47																											cttcctccttctccttctcctcctccttctcc	0.443													4	7	---	---	---	---					
RP11-522B15.3	0	broad.mit.edu	37	15	96918836	96918836	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr15:96918836delT	ENST00000558499.1	+	0	123																											ACCTGGGttcttttttttttt	0.473													2	4	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5994048	5994051	+	RNA	DEL	ATCC	ATCC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr16:5994048_5994051delATCC	ENST00000569895.1	+	0	436																											gttatcatcaatccatccatccat	0.471													4	4	---	---	---	---					
RP11-410D17.2	0	broad.mit.edu	37	16	58975274	58975276	+	RNA	DEL	CTT	CTT	-	rs148651695		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr16:58975274_58975276delCTT	ENST00000500117.1	+	0	679																											tctcttcctccttctaaccctcc	0.379													9	0	---	---	---	---					
LA16c-444G7.1	0	broad.mit.edu	37	16	88281222	88281225	+	RNA	DEL	TTGA	TTGA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr16:88281222_88281225delTTGA	ENST00000563190.1	+	0	119																											gagtgaatgtttgattgaatgagt	0.426													3	6	---	---	---	---					
LA16c-444G7.1	0	broad.mit.edu	37	16	88330062	88330063	+	RNA	INS	-	-	C	rs113788215	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr16:88330062_88330063insC	ENST00000563190.1	+	0	344																											aTGCTCACCCTCCCCCCCACAC	0.505													3	5	---	---	---	---					
MYO15A	51168	broad.mit.edu	37	17	18047246	18047246	+	Frame_Shift_Del	DEL	C	C	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:18047246delC	ENST00000205890.5	+	28	6447	c.6109delC	c.(6109-6111)ccfs	p.P2037fs		NM_016239.3	NP_057323.3	Q9UKN7	MYO15_HUMAN	myosin XVA	2037	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			breast(5)|central_nervous_system(2)|endometrium(17)|kidney(3)|large_intestine(16)|lung(27)|ovary(3)|pancreas(1)|prostate(6)|skin(13)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	99	all_neural(463;0.228)					CCAGGCTGAGCCCCGTGTCAC	0.607													2	4	---	---	---	---					
RP11-260A9.6	0	broad.mit.edu	37	17	25318507	25318507	+	RNA	DEL	C	C	-	rs68017874		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:25318507delC	ENST00000580686.1	-	0	189																											CTCAATGAAACCCATGTAAGA	0.368													2	4	---	---	---	---					
RP11-271K11.5	0	broad.mit.edu	37	17	29369546	29369547	+	RNA	DEL	CA	CA	-	rs150909945	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:29369546_29369547delCA	ENST00000583112.1	-	0	628																		p.?(1)									cacatgcaagcacacacacaca	0.535													2	4	---	---	---	---					
RP11-642M2.1	0	broad.mit.edu	37	17	33175650	33175651	+	RNA	DEL	CA	CA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:33175650_33175651delCA	ENST00000579327.1	-	0	253																											AGCACAAAAGCACACAAAGGAA	0.475													2	4	---	---	---	---					
ETV4	2118	broad.mit.edu	37	17	41643430	41643430	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:41643430delA	ENST00000588996.1	+	0	31																											cgtctcaaagaaaaaaaaaaG	0.552													3	3	---	---	---	---					
RP11-166P13.3	0	broad.mit.edu	37	17	55155896	55155897	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:55155896_55155897insT	ENST00000576871.1	-	0	474_475																											gttgtcttctgttttttttttt	0.495													3	3	---	---	---	---					
LINC01482	101928104	broad.mit.edu	37	17	66628605	66628606	+	RNA	INS	-	-	TG	rs71144611		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:66628605_66628606insTG	ENST00000585484.1	+	0	33																											GTGTTTCACTCtgtgtgtgtgt	0.416													4	2	---	---	---	---					
LINC01483	101928122	broad.mit.edu	37	17	67591224	67591224	+	RNA	DEL	G	G	-	rs11077451	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:67591224delG	ENST00000433856.1	+	0	156																											GGATTTTTTTGTTGTTGTTGT	0.313													2	4	---	---	---	---					
KCNJ16	3773	broad.mit.edu	37	17	68070026	68070026	+	RNA	DEL	T	T	-	rs67672917		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:68070026delT	ENST00000435112.1	-	0	306																											TAGTCTTCAATTTTTTTTTTT	0.353													5	2	---	---	---	---					
RP11-101O21.1	0	broad.mit.edu	37	17	72094993	72094994	+	RNA	DEL	CA	CA	-	rs145947654		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr17:72094993_72094994delCA	ENST00000584003.1	-	0	360																											catgcacattcacacacacaca	0.441													3	4	---	---	---	---					
RP11-172F10.1	0	broad.mit.edu	37	18	4886491	4886492	+	RNA	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:4886491_4886492insC	ENST00000584204.1	-	0	500																											gcgacgccccaccccccttggc	0.574													2	4	---	---	---	---					
RP11-739N10.1	0	broad.mit.edu	37	18	25098455	25098456	+	RNA	INS	-	-	T	rs145422082	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:25098455_25098456insT	ENST00000584546.1	-	0	260																											atgatttttgataaaagtttga	0.238													6	3	---	---	---	---					
RP11-746B8.1	0	broad.mit.edu	37	18	30484474	30484475	+	RNA	DEL	TG	TG	-	rs34325836		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:30484474_30484475delTG	ENST00000580366.1	+	0	27																											AGTACAGGTTtgtgtgtgtgtg	0.332													3	5	---	---	---	---					
LINC01478	101927921	broad.mit.edu	37	18	41995459	41995459	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:41995459delA	ENST00000587877.1	-	0	386																											aataaaaattaaaaaaaaaTA	0.294													4	5	---	---	---	---					
RP11-116O18.3	0	broad.mit.edu	37	18	43283255	43283256	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:43283255_43283256insG	ENST00000589510.1	-	0	160																											gggtctatgttggggggggtcc	0.520													3	4	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	61817701	61817702	+	RNA	INS	-	-	T	rs71164807		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:61817701_61817702insT	ENST00000589376.1	+	0	200				AC100848.1_ENST00000417298.1_lincRNA	NR_033881.1																						ttccttcttgattttttttttt	0.337													2	4	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	61856134	61856134	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:61856134delT	ENST00000589376.1	+	0	200					NR_033881.1																						CTAGTGGTGCTTTTGTTTCCA	0.368													2	4	---	---	---	---					
RP11-751H17.1	0	broad.mit.edu	37	18	74913783	74913784	+	RNA	DEL	TC	TC	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:74913783_74913784delTC	ENST00000584843.1	+	0	209																											acagcaccaatctctctccatc	0.540													2	4	---	---	---	---					
RP11-176N18.2	0	broad.mit.edu	37	18	75238621	75238622	+	RNA	INS	-	-	TGTGTGCA	rs58608051		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr18:75238621_75238622insTGTGTGCA	ENST00000583629.1	+	0	497																											gtgtctctgtgcgtgtgcatgt	0.500													2	4	---	---	---	---					
PRTN3	5657	broad.mit.edu	37	19	843554	843555	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:843554_843555insC	ENST00000544537.2	+	1	214_215	c.32_33insC	c.(31-33)gagfs	p.E11fs	PRTN3_ENST00000234347.5_Frame_Shift_Ins_p.E52fs			P24158	PRTN3_HUMAN	proteinase 3	52					collagen catabolic process|positive regulation of cell proliferation|proteolysis		protein binding|serine-type endopeptidase activity			lung(1)|ovary(2)|urinary_tract(1)	4		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGAACCCGGGCAGCCACTTCT	0.713													2	4	---	---	---	---					
CTC-513N18.6	0	broad.mit.edu	37	19	20617301	20617302	+	RNA	INS	-	-	C	rs117026781		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:20617301_20617302insC	ENST00000598131.1	+	0	160																											taggaaagaaaccccccccaca	0.416													3	6	---	---	---	---					
CTC-459F4.5	0	broad.mit.edu	37	19	28367915	28367916	+	RNA	INS	-	-	T			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:28367915_28367916insT	ENST00000589471.1	-	0	118																											ccttggtaaggtttttttgtta	0.366													2	4	---	---	---	---					
AC007795.1	0	broad.mit.edu	37	19	29369221	29369222	+	RNA	INS	-	-	A	rs112645778	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:29369221_29369222insA	ENST00000585883.1	+	0	202																											CTTCTCTGCCCTTAACTTCTTT	0.510													3	3	---	---	---	---					
CTC-439O9.3	0	broad.mit.edu	37	19	31698538	31698538	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:31698538delA	ENST00000589511.1	+	0	646																											ggaaacttgtaataaaaccac	0.353													2	4	---	---	---	---					
FLJ26850	400710	broad.mit.edu	37	19	50567905	50567906	+	RNA	DEL	GA	GA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:50567905_50567906delGA	ENST00000527209.1	+	0	806					NR_027257.1																						gggttgtggggagagagagaga	0.446													2	4	---	---	---	---					
MGC45922	284365	broad.mit.edu	37	19	51321023	51321024	+	RNA	INS	-	-	GTGT	rs57958306		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr19:51321023_51321024insGTGT	ENST00000326989.5	+	0	62					NR_038359.1																						GTTGTGAGGGCgtgtgtgtgtg	0.515													3	3	---	---	---	---					
LOC727993	727993	broad.mit.edu	37	20	1959267	1959268	+	RNA	DEL	TG	TG	-	rs71814909		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr20:1959267_1959268delTG	ENST00000446562.1	+	0	1216																											AACCTGAATAtgtgtgtgtgtg	0.411													2	4	---	---	---	---					
NCOR1P1	149934	broad.mit.edu	37	20	26094301	26094301	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr20:26094301delG	ENST00000478176.1	-	0	150					NR_003678.1																						TTCATCAAAAGCAAAGACAAG	0.343													3	5	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11069266	11069266	+	RNA	DEL	A	A	-	rs56865191		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:11069266delA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		cacaaatggcaaaaaaaaaga	0.318													3	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11082289	11082290	+	RNA	INS	-	-	A	rs141568460		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:11082289_11082290insA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		cttaacatcctacacacaggac	0.465													5	9	---	---	---	---					
AP000470.2	0	broad.mit.edu	37	21	25527764	25527765	+	RNA	DEL	CT	CT	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:25527764_25527765delCT	ENST00000448063.1	-	0	411_412																											cttgctctcactctctctctct	0.376													3	5	---	---	---	---					
LOC339622	339622	broad.mit.edu	37	21	26318937	26318937	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:26318937delT	ENST00000441009.1	+	0	330				AP000146.2_ENST00000441666.1_lincRNA	NR_046198.3																						TAACCACCTATTTTTTTTTCA	0.363													3	2	---	---	---	---					
AP000233.4	0	broad.mit.edu	37	21	26641798	26641798	+	RNA	DEL	A	A	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:26641798delA	ENST00000409758.1	-	0	89																											gcataaaaagaaaaaaaaaac	0.333													2	4	---	---	---	---					
CYYR1-AS1	100996571	broad.mit.edu	37	21	27791764	27791764	+	RNA	DEL	T	T	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:27791764delT	ENST00000357401.3	+	0	186				AP001597.1_ENST00000414486.1_RNA|AP001596.6_ENST00000444306.1_RNA|AP001596.6_ENST00000429340.1_RNA|AP001596.6_ENST00000421771.1_RNA																							ccccaaagtcttagctcattc	0.428													2	4	---	---	---	---					
AP000282.2	0	broad.mit.edu	37	21	34361313	34361314	+	RNA	INS	-	-	G			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr21:34361313_34361314insG	ENST00000420356.1	-	0	201				AP000282.2_ENST00000454622.1_RNA																							GTCATCTTAAAGGGGAGTCCCC	0.450													2	4	---	---	---	---					
AC007064.24	0	broad.mit.edu	37	22	17351804	17351804	+	RNA	DEL	G	G	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr22:17351804delG	ENST00000442403.1	+	0	288																											CATTATCCCTGGTATAGGGCA	0.453													2	4	---	---	---	---					
RP1-149A16.12	0	broad.mit.edu	37	22	32729846	32729847	+	RNA	DEL	CA	CA	-			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr22:32729846_32729847delCA	ENST00000446543.1	-	0	94																											acacacacaccacagacaccca	0.480													2	4	---	---	---	---					
ISX-AS1	101926957	broad.mit.edu	37	22	35395159	35395160	+	RNA	INS	-	-	GT	rs145602493	by1000genomes	TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr22:35395159_35395160insGT	ENST00000448318.4	-	0	986				RP1-272J12.1_ENST00000427881.1_RNA																							tgtgcaagtaggtgtgtgtgtg	0.337													4	3	---	---	---	---					
LOC284930	284930	broad.mit.edu	37	22	48159490	48159491	+	RNA	INS	-	-	A			TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chr22:48159490_48159491insA	ENST00000423737.1	+	0	1125																											GACTGTCTTAGAAGGGGAGTCT	0.450													2	4	---	---	---	---					
RP13-188A5.1	0	broad.mit.edu	37	X	56005523	56005524	+	RNA	DEL	GA	GA	-	rs72468280		TCGA-17-Z019-01A-01W-0746-08	TCGA-17-Z019-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e4cf515b-9c79-405e-9d44-7ec5376063e2	ed3e0a17-44af-4b91-ac37-198aed05c9c5	g.chrX:56005523_56005524delGA	ENST00000452532.1	+	0	678																											CATATAGGGCGAGAGAGAGAGA	0.376													2	4	---	---	---	---					
