Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C10orf71	118461	broad.mit.edu	37	10	50532115	50532115	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:50532115C>T	ENST00000374144.3	+	3	1813	c.1525C>T	c.(1525-1527)Cgt>Tgt	p.R509C	C10orf71_ENST00000323868.4_Missense_Mutation_p.R509C			Q711Q0	CJ071_HUMAN	chromosome 10 open reading frame 71	509										endometrium(1)	1						CGTGCGGAAGCGTGTTAAGAG	0.488000													7	107					0	0	0.307466	0	0
DGCR2	9993	broad.mit.edu	37	22	19044613	19044613	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:19044613T>A	ENST00000263196.7	-	6	935	c.688A>T	c.(688-690)Aac>Tac	p.N230Y	DGCR2_ENST00000545799.1_3'UTR|DGCR2_ENST00000537045.1_Missense_Mutation_p.N189Y|DGCR2_ENST00000473832.1_5'UTR	NM_001184781.1|NM_005137.2	NP_001171710.1|NP_005128.1	P98153	IDD_HUMAN	DiGeorge syndrome critical region gene 2	230	C-type lectin.				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(9)|ovary(1)|skin(1)	18	Colorectal(54;0.0993)					CAGAACACGTTGTCGTTCTCA	0.582000													10	23					0	0	0.361761	0	0
MED12L	116931	broad.mit.edu	37	3	150910380	150910380	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:150910380C>G	ENST00000309237.4	+	14	2545	c.2012C>G	c.(2011-2013)aCt>aGt	p.T671S	MED12L_ENST00000422248.2_Intron|MED12L_ENST00000273432.4_Intron|MED12L_ENST00000474524.1_Intron			Q86YW9	MD12L_HUMAN	mediator complex subunit 12-like	656					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				NS(1)|breast(3)|central_nervous_system(3)|cervix(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|kidney(9)|large_intestine(27)|lung(50)|ovary(6)|prostate(3)|skin(4)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	128			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCAGGAACCACTAACATTTTT	0.353000													8	1					0	0	0.307466	0	0
ZNF461	92283	broad.mit.edu	37	19	37129906	37129906	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:37129906C>T	ENST00000588268.1	-	6	1568	c.1341G>A	c.(1339-1341)ggG>ggA	p.G447G	ZNF461_ENST00000540605.2_5'UTR|ZNF461_ENST00000360357.4_Silent_p.G424G	NM_153257.2	NP_694989.2	Q8TAF7	ZN461_HUMAN	zinc finger protein 461	447					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(4)|lung(17)|prostate(1)|urinary_tract(2)	29	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TAAAAGTCTTCCCACATTCCT	0.408000													4	77					0	0	0.150653	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149212595	149212595	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:149212595C>T	ENST00000309241.5	+	5	991	c.959C>T	c.(958-960)tCc>tTc	p.S320F	PPARGC1B_ENST00000403750.1_Missense_Mutation_p.S256F|PPARGC1B_ENST00000360453.4_Missense_Mutation_p.S281F|PPARGC1B_ENST00000394320.3_Missense_Mutation_p.S320F	NM_133263.3	NP_573570.3	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	320					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity			NS(1)|breast(1)|endometrium(1)|kidney(3)|large_intestine(1)|liver(2)|lung(15)|ovary(3)|prostate(2)|stomach(1)	30			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AGCAACCCCTCCCAGCAGGTC	0.617000													4	41					0	0	0.150653	0	0
OR1S2	219958	broad.mit.edu	37	11	57970918	57970918	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:57970918C>A	ENST00000302592.6	-	1	735	c.736G>T	c.(736-738)Gga>Tga	p.G246*		NM_001004459.1	NP_001004459.1	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S, member 2	246					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(11)|kidney(1)|large_intestine(4)|lung(23)|ovary(2)|skin(2)|stomach(2)|urinary_tract(1)	46		Breast(21;0.0589)				TTCCACTTTCCCTGTGTGGAT	0.463000													22	60					1.50039e-11	1.8256e-11	0.608945	1	0
GIMAP5	55340	broad.mit.edu	37	7	150439289	150439289	+	Nonsense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:150439289T>A	ENST00000358647.3	+	3	429	c.62T>A	c.(61-63)tTg>tAg	p.L21*	GIMAP5_ENST00000479556.1_3'UTR	NM_018384.4	NP_060854.2			GTPase, IMAP family member 5											central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(8)|ovary(1)|prostate(1)|urinary_tract(2)	19			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAGATAACTTGTCTGCAACA	0.433000													15	131					0	0	0.500413	0	0
KCNH8	131096	broad.mit.edu	37	3	19574962	19574962	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:19574962C>T	ENST00000328405.2	+	16	2961	c.2695C>T	c.(2695-2697)Ctg>Ttg	p.L899L		NM_144633.2	NP_653234.2	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H (eag-related), member 8	899						integral to membrane	two-component sensor activity			NS(1)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(12)|liver(3)|lung(37)|ovary(3)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	77						GGAAAACGTTCTGTCACCTCA	0.483000													5	87					0	0	0.217242	0	0
SLC16A2	6567	broad.mit.edu	37	X	73744218	73744218	+	Silent	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:73744218C>A	ENST00000276033.5	+	3	988	c.822C>A	c.(820-822)acC>acA	p.T274T	SLC16A2_ENST00000587091.1_Silent_p.T200T			P36021	MOT8_HUMAN	solute carrier family 16, member 2 (thyroid hormone transporter)	200						integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(4)|ovary(1)|skin(2)	21					Pyruvic acid(DB00119)	GCTACTTCACCTACGGGATTC	0.572000													3	64					0.004672	0.00541777	0.115264	1	0
KIAA1841	84542	broad.mit.edu	37	2	61361278	61361278	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:61361278A>G	ENST00000295031.5	+	21	2412	c.2035A>G	c.(2035-2037)Aaa>Gaa	p.K679E		NM_032506.2	NP_115895.2	Q6NSI8	K1841_HUMAN	KIAA1841	0										breast(3)|kidney(1)|large_intestine(4)|lung(12)|ovary(1)|skin(2)|stomach(1)|urinary_tract(1)	25			Epithelial(17;0.193)			acagacagacaaactgagacc	0.398000													4	54					0	0	0.150653	0	0
ZNF208	7757	broad.mit.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:22155896A>C	ENST00000397126.4	-	4	2088	c.1940T>G	c.(1939-1941)aTt>aGt	p.I647S	ZNF208_ENST00000599916.1_Intron|ZNF208_ENST00000601773.1_Intron	NM_007153.3	NP_009084.2			zinc finger protein 208											breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(18)|liver(1)|lung(71)|ovary(6)|prostate(3)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	113		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAGACCTTAATAAAGGTTTT	0.398000													3	117					0	0	0.115264	0	0
TTYH2	94015	broad.mit.edu	37	17	72256305	72256305	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:72256305C>T	ENST00000441391.2	+	8	1811	c.599C>T	c.(598-600)gCg>gTg	p.A200V	TTYH2_ENST00000529107.1_Missense_Mutation_p.A500V|TTYH2_ENST00000269346.4_Missense_Mutation_p.A521V|CTD-2514K5.4_ENST00000583018.1_RNA	NM_052869.1	NP_443101.1	Q9BSA4	TTYH2_HUMAN	tweety family member 2	521						chloride channel complex|plasma membrane	chloride channel activity|protein binding			breast(2)|endometrium(1)|kidney(3)|large_intestine(8)|lung(14)|ovary(3)|pancreas(1)|stomach(3)|upper_aerodigestive_tract(1)	36						CTGTCTGTGGCGGATGAGCAC	0.527000													11	109					0	0	0.457914	0	0
CHD1	1105	broad.mit.edu	37	5	98240663	98240663	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:98240663C>T	ENST00000284049.3	-	2	342	c.193G>A	c.(193-195)Gag>Aag	p.E65K		NM_001270.2	NP_001261.2	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	65	Ser-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			NS(1)|breast(4)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(12)|ovary(2)|pancreas(1)|prostate(7)|skin(3)|urinary_tract(2)	49		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	GTGTCTGACTCAGACTCTGAC	0.458000													5	153					0	0	0.184627	0	0
BLMH	642	broad.mit.edu	37	17	28599790	28599790	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:28599790T>A	ENST00000261714.6	-	8	1103	c.929A>T	c.(928-930)aAg>aTg	p.K310M	BLMH_ENST00000394819.3_Missense_Mutation_p.K223M	NM_000386.3	NP_000377.1	Q13867	BLMH_HUMAN	bleomycin hydrolase	310					proteolysis	cytoplasm|nucleus	aminopeptidase activity|carboxypeptidase activity|cysteine-type endopeptidase activity|protein binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(2)|ovary(1)|prostate(1)|stomach(1)	13						AGCAACCATCTTTTTCAGGAA	0.383000													41	75					0	0	0.864702	0	0
SMC3	9126	broad.mit.edu	37	10	112344026	112344026	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:112344026A>G	ENST00000361804.4	+	13	1303	c.1177A>G	c.(1177-1179)Aag>Gag	p.K393E		NM_005445.3	NP_005436.1	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	393					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(5)|lung(13)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	39		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		AGAAAGGGATAAGTGGATTAA	0.383000													3	131					0	0	0.150653	0	0
POT1	25913	broad.mit.edu	37	7	124511045	124511045	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:124511045A>T	ENST00000357628.3	-	7	773	c.175T>A	c.(175-177)Tgc>Agc	p.C59S	POT1_ENST00000393329.1_Intron	NM_015450.2	NP_056265.2	Q9NUX5	POTE1_HUMAN	protection of telomeres 1	59					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			NS(1)|breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(4)|liver(1)|lung(23)|ovary(1)|prostate(1)|skin(3)|stomach(1)|urinary_tract(1)	47						AAGAGCAGGCAAGTTAGTTTT	0.318000													27	37					0	0	0.706142	0	0
GRM6	2916	broad.mit.edu	37	5	178418427	178418427	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:178418427G>A	ENST00000231188.5	-	3	1033	c.855C>T	c.(853-855)atC>atT	p.I285I	GRM6_ENST00000517717.1_Silent_p.I285I	NM_000843.3	NP_000834.2	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6	285					detection of visible light|visual perception	integral to plasma membrane				NS(2)|breast(4)|endometrium(9)|large_intestine(12)|lung(21)|ovary(2)|pancreas(1)|prostate(3)|urinary_tract(1)	55	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TGTCCCACCTGATGTCATCCT	0.607000													6	108					0	0	0.217242	0	0
CNTN5	53942	broad.mit.edu	37	11	100170119	100170119	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:100170119G>A	ENST00000524871.1	+	20	2901	c.2611G>A	c.(2611-2613)Gct>Act	p.A871T	CNTN5_ENST00000527185.1_Missense_Mutation_p.A871T|CNTN5_ENST00000418526.2_Missense_Mutation_p.A797T|CNTN5_ENST00000524560.1_3'UTR|CNTN5_ENST00000528682.1_Missense_Mutation_p.A871T|CNTN5_ENST00000279463.3_Missense_Mutation_p.A871T	NM_014361.3	NP_055176.1	O94779	CNTN5_HUMAN	contactin 5	871					cell adhesion	anchored to membrane|plasma membrane	protein binding			NS(2)|breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(12)|lung(38)|ovary(2)|pancreas(2)|prostate(2)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	81		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CATCTGTTCAGCTGAAGGAGG	0.323000													30	27					0	0	0.740014	0	0
OR4D10	390197	broad.mit.edu	37	11	59245666	59245666	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:59245666T>G	ENST00000530162.1	+	1	821	c.764T>G	c.(763-765)aTc>aGc	p.I255S		NM_001004705.1	NP_001004705.1	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D, member 10	255					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|breast(2)|endometrium(2)|kidney(2)|large_intestine(4)|lung(12)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	30						GTGCCCTGCATCTATGTCTAT	0.552000													91	166					0	0	0.870114	0	0
ADAM17	6868	broad.mit.edu	37	2	9683351	9683351	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:9683351G>A	ENST00000310823.3	-	2	343	c.161C>T	c.(160-162)tCg>tTg	p.S54L	ADAM17_ENST00000497134.1_Missense_Mutation_p.S54L	NM_003183.4	NP_003174.3	P78536	ADA17_HUMAN	ADAM metallopeptidase domain 17	54					B cell differentiation|cell adhesion mediated by integrin|epidermal growth factor receptor signaling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|germinal center formation|membrane protein intracellular domain proteolysis|negative regulation of interleukin-8 production|nerve growth factor receptor signaling pathway|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of chemokine production|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of protein phosphorylation|positive regulation of T cell chemotaxis|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of mast cell apoptosis|response to drug|response to high density lipoprotein particle stimulus|response to hypoxia|response to lipopolysaccharide|spleen development|T cell differentiation in thymus|wound healing, spreading of epidermal cells	actin cytoskeleton|apical plasma membrane|cell surface|cytoplasm|integral to plasma membrane|membrane raft	integrin binding|interleukin-6 receptor binding|metalloendopeptidase activity|PDZ domain binding|SH3 domain binding|zinc ion binding			breast(1)|cervix(4)|endometrium(2)|kidney(2)|large_intestine(7)|lung(8)|ovary(1)|prostate(2)|skin(1)	28	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.225)		TTTTCTTACCGAATGCTGCTG	0.328000													5	103					0	0	0.184627	0	0
MYH1	4619	broad.mit.edu	37	17	10417174	10417174	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:10417174G>A	ENST00000226207.5	-	8	799	c.705C>T	c.(703-705)aaC>aaT	p.N235N	CTC-297N7.7_ENST00000581304.1_RNA|CTC-297N7.7_ENST00000399342.2_RNA|CTC-297N7.7_ENST00000587182.1_RNA	NM_005963.3	NP_005954.3	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	235	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			NS(7)|breast(4)|central_nervous_system(1)|endometrium(16)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(22)|lung(78)|ovary(11)|pancreas(1)|prostate(3)|skin(13)|upper_aerodigestive_tract(4)|urinary_tract(5)	176						CGGTCTTGGCGTTGCCAAAGG	0.507000													44	77					0	0	0.870114	0	0
OR1S2	219958	broad.mit.edu	37	11	57970919	57970919	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:57970919C>T	ENST00000302592.6	-	1	734	c.735G>A	c.(733-735)caG>caA	p.Q245Q		NM_001004459.1	NP_001004459.1	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S, member 2	245					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(11)|kidney(1)|large_intestine(4)|lung(23)|ovary(2)|skin(2)|stomach(2)|urinary_tract(1)	46		Breast(21;0.0589)				TCCACTTTCCCTGTGTGGATG	0.463000													23	60					0	0	0.624587	0	0
ZBED1	9189	broad.mit.edu	37	X	2407351	2407351	+	Silent	SNP	G	G	A	rs141520513		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:2407351G>A	ENST00000381223.4	-	2	1613	c.1410C>T	c.(1408-1410)aaC>aaT	p.N470N	ZBED1_ENST00000381222.2_Silent_p.N470N|ZBED1_ENST00000381218.3_Silent_p.N470N|DHRSX_ENST00000334651.5_Intron	NM_001171135.1|NM_001171136.1|NM_004729.3	NP_001164606.1|NP_001164607.1|NP_004720.1	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	470						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity			endometrium(8)|kidney(1)|large_intestine(3)|lung(11)|prostate(1)|upper_aerodigestive_tract(1)	25		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGGTGGCCACGTTGAGAAACA	0.617000													7	109					0	0	0.248553	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239234519	239234519	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:239234519C>T	ENST00000373327.4	+	3	484	c.262C>T	c.(262-264)Ctg>Ttg	p.L88L	TRAF3IP1_ENST00000391993.3_Silent_p.L88L|TRAF3IP1_ENST00000391994.2_Silent_p.L88L	NM_015650.3	NP_056465.2	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting protein 1	88	Abolishes microtubules-binding when missing.					cytoplasm|cytoskeleton	protein binding			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|ovary(2)|prostate(1)|skin(2)	23		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		GGGAGAGCCACTGTTGGCCAA	0.438000													8	44					0	0	0.307466	0	0
OR6F1	343169	broad.mit.edu	37	1	247875704	247875704	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:247875704C>A	ENST00000302084.2	-	1	401	c.354G>T	c.(352-354)atG>atT	p.M118I	RP11-634B7.4_ENST00000449298.1_RNA	NM_001005286.1	NP_001005286.1	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F, member 1	118					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|kidney(1)|large_intestine(5)|lung(34)|skin(2)|stomach(2)|upper_aerodigestive_tract(2)	47	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGTCATAAGCCATGGCTGCCA	0.512000													33	101					5.09552e-08	6.10968e-08	0.750413	1	0
PHLPP1	23239	broad.mit.edu	37	18	60645538	60645538	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:60645538G>A	ENST00000400316.4	+	17	4273	c.2492G>A	c.(2491-2493)gGc>gAc	p.G831D	PHLPP1_ENST00000262719.5_Missense_Mutation_p.G1343D	NM_194449.3	NP_919431.2	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein phosphatase 1	1343					apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity			endometrium(2)|kidney(2)|lung(13)	17						CGCATCCTGGGCTACACCTTC	0.572000													22	17					0	0	0.624587	0	0
GOLGA4	2803	broad.mit.edu	37	3	37365369	37365369	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:37365369C>T	ENST00000361924.2	+	14	2366	c.1992C>T	c.(1990-1992)ttC>ttT	p.F664F	GOLGA4_ENST00000444882.1_Intron|GOLGA4_ENST00000356847.4_Silent_p.F686F	NM_002078.4	NP_002069.2	Q13439	GOGA4_HUMAN	golgin A4	664	Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			NS(2)|breast(3)|central_nervous_system(3)|endometrium(6)|kidney(2)|large_intestine(17)|liver(2)|lung(16)|ovary(4)|prostate(2)|skin(4)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	65						AGATTATCTTCCAGGCCCACA	0.328000													5	53					0	0	0.184627	0	0
MYRF	745	broad.mit.edu	37	11	61539137	61539137	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:61539137G>A	ENST00000278836.5	+	6	1002	c.906G>A	c.(904-906)ccG>ccA	p.P302P	TMEM258_ENST00000535042.1_Intron|MYRF_ENST00000265460.5_Silent_p.P293P	NM_001127392.1	NP_001120864.1			myelin regulatory factor																		CCCAGGGTCCGCTCTCCCCGG	0.667000													42	53					0	0	0.864702	0	0
TENM1	10178	broad.mit.edu	37	X	123805640	123805640	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:123805640C>A	ENST00000422452.2	-	6	1124	c.1061G>T	c.(1060-1062)gGa>gTa	p.G354V	TENM1_ENST00000371130.3_Missense_Mutation_p.G354V	NM_001163278.1|NM_001163279.1	NP_001156750.1|NP_001156751.1			teneurin transmembrane protein 1																		ATACAGCTCTCCTTCAACTGG	0.453000													27	290					1.17739e-12	1.44685e-12	0.693898	1	0
FAM133A	286499	broad.mit.edu	37	X	92964563	92964563	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:92964563G>C	ENST00000538690.1	+	5	706	c.145G>C	c.(145-147)Gaa>Caa	p.E49Q	FAM133A_ENST00000322139.4_Missense_Mutation_p.E49Q|FAM133A_ENST00000355813.5_Missense_Mutation_p.E49Q|FAM133A_ENST00000332647.4_Missense_Mutation_p.E49Q	NM_001171110.1	NP_001164581.1	Q8N9E0	F133A_HUMAN	family with sequence similarity 133, member A	49	Lys-rich.									breast(2)|endometrium(2)|large_intestine(8)|lung(7)|upper_aerodigestive_tract(1)	20						GAAACAATTAGAAAATAAAAA	0.353000													8	71					0	0	0.307466	0	0
TRIP11	9321	broad.mit.edu	37	14	92470887	92470887	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:92470887T>A	ENST00000267622.4	-	11	3806	c.3433A>T	c.(3433-3435)Act>Tct	p.T1145S		NM_004239.3	NP_004230.2	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1145					transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			breast(3)|central_nervous_system(2)|endometrium(1)|kidney(8)|large_intestine(12)|lung(17)|ovary(7)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	58				COAD - Colon adenocarcinoma(157;0.223)		TCAAATCTAGTGGACAATTTT	0.328000			T	PDGFRB	AML								7	19					0	0	0.278610	0	0
CSMD3	114788	broad.mit.edu	37	8	113358405	113358405	+	Silent	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:113358405C>A	ENST00000297405.5	-	41	6607	c.6363G>T	c.(6361-6363)gtG>gtT	p.V2121V	CSMD3_ENST00000455883.2_Silent_p.V2017V|CSMD3_ENST00000352409.3_Silent_p.V2051V|CSMD3_ENST00000343508.3_Silent_p.V2081V	NM_198123.1	NP_937756.1	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3	2121	CUB 12.					integral to membrane|plasma membrane		p.V2121V(1)|p.V2081V(1)		breast(7)|central_nervous_system(6)|endometrium(44)|haematopoietic_and_lymphoid_tissue(8)|kidney(36)|large_intestine(72)|liver(5)|lung(389)|ovary(24)|prostate(6)|skin(23)|upper_aerodigestive_tract(19)|urinary_tract(7)	646						GACTGAGGATCACACCACTGA	0.388000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			34	75					6.70999e-13	8.28683e-13	0.796494	1	0
MYO10	4651	broad.mit.edu	37	5	16673969	16673969	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:16673969A>T	ENST00000513610.1	-	36	5448	c.4994T>A	c.(4993-4995)aTg>aAg	p.M1665K	MYO10_ENST00000505695.1_Missense_Mutation_p.M1004K|MYO10_ENST00000427430.2_Missense_Mutation_p.M1022K|MYO10_ENST00000274203.9_Missense_Mutation_p.M1022K|MYO10_ENST00000515803.1_Missense_Mutation_p.M1004K	NM_012334.2	NP_036466.2	Q9HD67	MYO10_HUMAN	myosin X	1665	MyTH4.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			NS(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(19)|lung(28)|ovary(2)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	86						GTATTTTTCCATCTCGCTTCC	0.473000													4	148					0	0	0.184627	0	0
EIF3H	8667	broad.mit.edu	37	8	117768021	117768021	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:117768021C>A	ENST00000521861.1	-	1	39	c.16G>T	c.(16-18)Gaa>Taa	p.E6*	EIF3H_ENST00000276682.4_Nonsense_Mutation_p.E20*	NM_003756.2	NP_003747.1	O15372	EIF3H_HUMAN	eukaryotic translation initiation factor 3, subunit H	6					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			large_intestine(2)|lung(10)|skin(1)	13	all_cancers(13;3.98e-22)|Lung NSC(37;0.000183)|Ovarian(258;0.0172)					CCGGTACCTTCCTTGCGGGAC	0.597000													19	31					8.28177e-16	1.04902e-15	0.557998	1	0
TSHZ3	57616	broad.mit.edu	37	19	31770628	31770628	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:31770628G>A	ENST00000240587.4	-	2	398	c.71C>T	c.(70-72)gCc>gTc	p.A24V		NM_020856.2	NP_065907.2	Q63HK5	TSH3_HUMAN	teashirt zinc finger homeobox 3	24					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(4)|endometrium(15)|kidney(9)|large_intestine(20)|lung(60)|ovary(4)|pancreas(2)|prostate(4)|skin(5)	123	Esophageal squamous(110;0.226)					GTCCACCAGGGCAGCAGCCTT	0.562000													18	37					0	0	0.729181	0	0
ACVR1B	91	broad.mit.edu	37	12	52377796	52377796	+	Nonsense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:52377796G>A	ENST00000257963.4	+	5	902	c.825G>A	c.(823-825)tgG>tgA	p.W275*	ACVR1B_ENST00000426655.2_Nonsense_Mutation_p.W275*|ACVR1B_ENST00000541224.1_Nonsense_Mutation_p.W316*|ACVR1B_ENST00000542485.1_Nonsense_Mutation_p.W223*|ACVR1B_ENST00000415850.2_Nonsense_Mutation_p.W275*	NM_004302.4|NM_020328.3	NP_004293.1|NP_064733.3	P36896	ACV1B_HUMAN	activin A receptor, type IB	275	Protein kinase.				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding	p.W275*(1)		breast(5)|endometrium(4)|kidney(5)|large_intestine(12)|lung(10)|ovary(1)|pancreas(6)|prostate(1)	44				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	ATGGCACCTGGACACAGCTGT	0.453000													11	16					0	0	0.435327	0	0
UNC93A	54346	broad.mit.edu	37	6	167705029	167705029	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:167705029C>T	ENST00000230256.3	+	1	227	c.52C>T	c.(52-54)Ctc>Ttc	p.L18F	UNC93A_ENST00000366829.2_Missense_Mutation_p.L18F|UNC93A_ENST00000366830.2_3'UTR	NM_018974.3	NP_061847.2	Q86WB7	UN93A_HUMAN	unc-93 homolog A (C. elegans)	18						integral to membrane|plasma membrane				breast(2)|central_nervous_system(2)|endometrium(2)|kidney(2)|large_intestine(7)|lung(20)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	40		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GTTCCTGCTTCTCTTTACAGC	0.468000													12	75					0	0	0.435327	0	0
WDR72	256764	broad.mit.edu	37	15	54015037	54015037	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:54015037G>C	ENST00000396328.1	-	3	461	c.222C>G	c.(220-222)ttC>ttG	p.F74L	WDR72_ENST00000559418.1_Missense_Mutation_p.F74L|WDR72_ENST00000360509.5_Missense_Mutation_p.F74L|WDR72_ENST00000557913.1_Missense_Mutation_p.F74L	NM_001277176.1|NM_182758.2	NP_001264105.1|NP_877435.3	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	74										NS(1)|breast(1)|endometrium(4)|kidney(4)|large_intestine(18)|lung(29)|prostate(3)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	71				all cancers(107;0.0511)		GCTGTTTAGAGAAGTCCCTTG	0.378000													15	138					0	0	0.575678	0	0
OR52E4	390081	broad.mit.edu	37	11	5906391	5906391	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:5906391C>A	ENST00000316987.2	+	1	891	c.869C>A	c.(868-870)cCt>cAt	p.P290H		NM_001005165.1	NP_001005165.1	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E, member 4	290					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			autonomic_ganglia(1)|endometrium(1)|kidney(1)|large_intestine(7)|liver(2)|lung(13)|ovary(2)|prostate(1)|skin(2)	30		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCCTTAACCCTGTCATTTAT	0.358000													36	63					4.11147e-13	5.10319e-13	0.788014	1	0
CCDC135	84229	broad.mit.edu	37	16	57741439	57741439	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:57741439C>G	ENST00000360716.3	+	8	1147	c.926C>G	c.(925-927)tCg>tGg	p.S309W	CCDC135_ENST00000394337.4_Missense_Mutation_p.S309W|CCDC135_ENST00000336825.8_Missense_Mutation_p.S244W			Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	309						cytoplasm				breast(1)|central_nervous_system(2)|cervix(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(12)|ovary(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	30						CTTGTGCTATCGGGGAAGCGC	0.592000													2	2					0	0	0.150653	0	0
EIF3H	8667	broad.mit.edu	37	8	117768022	117768022	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:117768022C>T	ENST00000521861.1	-	1	38	c.15G>A	c.(13-15)aaG>aaA	p.K5K	EIF3H_ENST00000276682.4_Silent_p.K19K	NM_003756.2	NP_003747.1	O15372	EIF3H_HUMAN	eukaryotic translation initiation factor 3, subunit H	5					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			large_intestine(2)|lung(10)|skin(1)	13	all_cancers(13;3.98e-22)|Lung NSC(37;0.000183)|Ovarian(258;0.0172)					CGGTACCTTCCTTGCGGGACG	0.602000													20	31					0	0	0.575678	0	0
PDYN	5173	broad.mit.edu	37	20	1961196	1961196	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr20:1961196G>A	ENST00000217305.2	-	4	763	c.538C>T	c.(538-540)Cgc>Tgc	p.R180C	PDYN_ENST00000539905.1_Missense_Mutation_p.R180C|PDYN_ENST00000540134.1_Missense_Mutation_p.R180C|RP4-684O24.5_ENST00000446562.1_RNA	NM_001190892.1|NM_001190898.2|NM_024411.4	NP_001177821.1|NP_001177827.1|NP_077722.1	P01213	PDYN_HUMAN	prodynorphin	180					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity	p.R180C(1)		endometrium(3)|kidney(1)|large_intestine(5)|lung(22)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						GGGTATTTGCGCAAAAAGCCC	0.602000													4	215					0	0	0.184627	0	0
AGRP	181	broad.mit.edu	37	16	67517006	67517006	+	Silent	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:67517006G>C	ENST00000290953.2	-	3	437	c.138C>G	c.(136-138)ggC>ggG	p.G46G	RP11-297D21.4_ENST00000602596.1_RNA	NM_001138.1	NP_001129.1	O00253	AGRP_HUMAN	agouti related protein homolog (mouse)	46					hormone-mediated signaling pathway|neuropeptide signaling pathway|regulation of feeding behavior	extracellular space|Golgi lumen	neuropeptide hormone activity			endometrium(1)	1		Acute lymphoblastic leukemia(13;0.00263)|all_hematologic(13;0.0274)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0717)|Epithelial(162;0.16)		GGGCCCGCAGGCCCAGGCCTG	0.597000													23	64					0	0	0.624587	0	0
BRD9	65980	broad.mit.edu	37	5	876252	876252	+	Silent	SNP	G	G	A	rs143034112		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:876252G>A	ENST00000323510.4	-	9	1058	c.1059C>T	c.(1057-1059)ggC>ggT	p.G353G	BRD9_ENST00000483173.1_Silent_p.G396G|BRD9_ENST00000388890.4_Silent_p.G333G|BRD9_ENST00000435709.2_3'UTR|BRD9_ENST00000467963.1_Silent_p.G449G			Q9H8M2	BRD9_HUMAN	bromodomain containing 9	449							nucleic acid binding			breast(1)|endometrium(2)|kidney(2)|large_intestine(7)|lung(11)|ovary(2)|pancreas(1)|prostate(3)	29			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			AGTGGTCTCCGCCTGTGATCT	0.637000													48	47					0	0	0.870114	0	0
HRNR	388697	broad.mit.edu	37	1	152192046	152192046	+	Missense_Mutation	SNP	T	T	G	rs149618092		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:152192046T>G	ENST00000368801.2	-	3	2134	c.2059A>C	c.(2059-2061)Agc>Cgc	p.S687R	FLG-AS1_ENST00000420707.1_RNA|FLG-AS1_ENST00000593011.1_RNA	NM_001009931.1	NP_001009931.1	Q86YZ3	HORN_HUMAN	hornerin	687					keratinization		calcium ion binding|protein binding			autonomic_ganglia(1)|breast(6)|central_nervous_system(2)|cervix(2)|endometrium(22)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(19)|liver(1)|lung(84)|ovary(5)|prostate(6)|skin(12)|stomach(9)|upper_aerodigestive_tract(5)|urinary_tract(6)	192	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGGCCATTGCTTGAAGACCAA	0.587000													31	111					0	0	0.760397	0	0
HIST2H2BF	440689	broad.mit.edu	37	1	149783681	149783681	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:149783681G>A	ENST00000427880.2	-	1	244	c.198C>T	c.(196-198)ttC>ttT	p.F66F	HIST2H2BF_ENST00000469483.1_5'UTR|HIST2H2BF_ENST00000545683.1_Silent_p.F66F|HIST2H2BF_ENST00000369167.1_Silent_p.F66F			Q5QNW6	H2B2F_HUMAN	histone cluster 2, H2bf	66					nucleosome assembly	nucleosome|nucleus	DNA binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(6)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	15	Breast(34;0.0124)|all_hematologic(923;0.127)					TGTCGTTGACGAAGGAGTTCA	0.617000													68	270					0	0	0.870114	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50660228	50660228	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:50660228C>A	ENST00000439308.2	-	16	3052	c.2560G>T	c.(2560-2562)Gcc>Tcc	p.A854S	TUBGCP6_ENST00000248846.5_Missense_Mutation_p.A854S|TUBGCP6_ENST00000491449.1_5'UTR	NM_020461.3	NP_065194.2	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	854					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			breast(4)|central_nervous_system(2)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(4)|lung(13)|ovary(3)|prostate(2)|skin(2)	45		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CCATCCCAGGCAGGCGAGTGT	0.662000													3	29					0.150653	0.169143	0.150653	1	0
IKBKB	3551	broad.mit.edu	37	8	42174363	42174363	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:42174363G>T	ENST00000520810.1	+	11	1252	c.1066G>T	c.(1066-1068)Gaa>Taa	p.E356*	IKBKB_ENST00000416505.2_Nonsense_Mutation_p.E297*|IKBKB_ENST00000379708.3_Nonsense_Mutation_p.E133*|IKBKB_ENST00000522147.1_Intron|IKBKB_ENST00000520835.1_Nonsense_Mutation_p.E354*	NM_001556.2	NP_001547.1	O14920	IKKB_HUMAN	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	356					anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity	p.E356*(1)		breast(4)|lung(1)|ovary(2)|skin(1)	8	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	GCTGCTGCAGGAAGCGGGCCT	0.582000													9	10					1.12685e-05	1.33173e-05	0.307466	1	0
ACADSB	36	broad.mit.edu	37	10	124793961	124793961	+	Silent	SNP	A	A	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:124793961A>T	ENST00000358776.4	+	2	146	c.132A>T	c.(130-132)atA>atT	p.I44I	ACADSB_ENST00000496730.2_3'UTR|ACADSB_ENST00000368869.4_5'UTR	NM_001609.3	NP_001600.1	P45954	ACDSB_HUMAN	acyl-CoA dehydrogenase, short/branched chain	44					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			breast(1)|central_nervous_system(1)|endometrium(3)|large_intestine(6)|lung(2)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	17		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	TACTCAATATAACAAATAATG	0.368000													30	22					0	0	0.740014	0	0
PIGR	5284	broad.mit.edu	37	1	207110868	207110868	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:207110868A>G	ENST00000356495.4	-	4	800	c.617T>C	c.(616-618)gTc>gCc	p.V206A		NM_002644.3	NP_002635.2	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor	206	Ig-like V-type 2.					extracellular region|integral to plasma membrane	protein binding			central_nervous_system(2)|endometrium(5)|kidney(3)|large_intestine(7)|lung(15)|ovary(1)|pancreas(1)|prostate(1)|skin(4)|stomach(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	45						TTGGTTGATGACAACGCTGAA	0.478000													21	81					0	0	0.639603	0	0
MGA	23269	broad.mit.edu	37	15	42052641	42052641	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:42052641G>T	ENST00000219905.7	+	20	7493	c.7312G>T	c.(7312-7314)Gaa>Taa	p.E2438*	MGA_ENST00000545763.1_Nonsense_Mutation_p.E2229*|MGA_ENST00000389936.4_Nonsense_Mutation_p.E2399*|MGA_ENST00000566586.1_Nonsense_Mutation_p.E2229*|MGA_ENST00000570161.1_Nonsense_Mutation_p.E2438*	NM_001164273.1	NP_001157745.1	Q8IWI9	MGAP_HUMAN	MGA, MAX dimerization protein	2399						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity	p.E2487*(1)		NS(1)|breast(4)|central_nervous_system(3)|endometrium(16)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(18)|lung(33)|ovary(8)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	95		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GCGGCGTGGTGAAATGAGGGA	0.443000													55	52					1.48341e-19	1.89846e-19	0.870114	1	0
OVOS2	144203	broad.mit.edu	37	12	31265986	31265986	+	RNA	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:31265986G>T	ENST00000542490.1	-	0	857																				central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(2)|lung(25)|prostate(3)|stomach(3)|urinary_tract(1)	41						CTGCTCAGCAGAAAAAGTGAA	0.423000													15	7					4.14922e-12	5.07355e-12	0.500413	1	0
SERPINB10	5273	broad.mit.edu	37	18	61600405	61600405	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:61600405C>T	ENST00000238508.3	+	7	816	c.757C>T	c.(757-759)Cta>Tta	p.L253L		NM_005024.1	NP_005015.1			serpin peptidase inhibitor, clade B (ovalbumin), member 10											breast(1)|endometrium(3)|kidney(2)|large_intestine(6)|lung(6)|prostate(1)|skin(3)|stomach(2)	24		Esophageal squamous(42;0.131)				CCTGCTTATACTACTGCCAGA	0.418000													85	68					0	0	0.870114	0	0
POTEF	728378	broad.mit.edu	37	2	130832621	130832621	+	Silent	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:130832621G>T	ENST00000357462.5	-	15	2517	c.2424C>A	c.(2422-2424)gcC>gcA	p.A808A	POTEF_ENST00000409914.2_Silent_p.A808A			A5A3E0	POTEF_HUMAN	POTE ankyrin domain family, member F	808	Actin-like.					cell cortex	ATP binding			breast(1)|cervix(1)|endometrium(6)|kidney(2)|large_intestine(4)|lung(28)|ovary(3)|prostate(3)|skin(4)|upper_aerodigestive_tract(1)	53						GGTTCAGGGTGGCCTCGGTCA	0.587000													60	116					3.36121e-32	4.41605e-32	0.870114	1	0
NLGN4X	57502	broad.mit.edu	37	X	5811257	5811257	+	Silent	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:5811257C>A	ENST00000381095.3	-	6	2679	c.2052G>T	c.(2050-2052)tcG>tcT	p.S684S	NLGN4X_ENST00000381092.1_Silent_p.S684S|NLGN4X_ENST00000275857.6_Silent_p.S684S|NLGN4X_ENST00000538097.1_Silent_p.S684S|NLGN4X_ENST00000381093.2_Silent_p.S704S	NM_181332.1	NP_851849.1	Q8N0W4	NLGNX_HUMAN	neuroligin 4, X-linked	684					brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity	p.S684S(1)		breast(1)|cervix(2)|endometrium(4)|large_intestine(21)|lung(39)|ovary(4)|prostate(2)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)	81						GGAAGAGGAGCGACGCCCCGA	0.527000													60	169					1.20869e-33	1.59651e-33	0.870114	1	0
PTCHD2	57540	broad.mit.edu	37	1	11591085	11591085	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:11591085C>T	ENST00000294484.6	+	16	3362	c.3224C>T	c.(3223-3225)cCt>cTt	p.P1075L	PTCHD2_ENST00000389575.3_Missense_Mutation_p.P1075L	NM_020780.1	NP_065831.1	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1075					cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			NS(3)|breast(2)|endometrium(9)|kidney(4)|large_intestine(5)|lung(34)|ovary(3)|pancreas(1)|prostate(6)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	76	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CAGTGCCTGCCTTCAGGTGCG	0.627000													21	48					0	0	0.624587	0	0
MT-CO2	4513	broad.mit.edu	37	MT	7711	7711	+	Silent	SNP	T	T	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrM:7711T>C	ENST00000361739.1	+	1	126	c.126T>C	c.(124-126)ctT>ctC	p.L42L						mitochondrially encoded cytochrome c oxidase II											endometrium(5)|kidney(8)|lung(2)|pancreas(3)|prostate(1)	19						CTGTATGCCCTTTTCCTAACA	0.433000													7	299					0	0	0.307466	0	0
MT-CYB	4519	broad.mit.edu	37	MT	14985	14985	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrM:14985G>A	ENST00000361789.2	+	1	239	c.239G>A	c.(238-240)cGc>cAc	p.80_80insH						mitochondrially encoded cytochrome b											breast(6)|endometrium(25)|kidney(33)|prostate(1)	65						CTGAATCATCCGCTACCTTCA	0.483000													14	249					0	0	0.500413	0	0
DHTKD1	55526	broad.mit.edu	37	10	12136103	12136103	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:12136103C>T	ENST00000263035.4	+	7	1253	c.1191C>T	c.(1189-1191)gtC>gtT	p.V397V	DHTKD1_ENST00000465617.1_3'UTR	NM_018706.5	NP_061176.3	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain containing 1	397					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			breast(1)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(11)|liver(2)|lung(14)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(1)	44		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			TCATCCATGTCAATGGAGACA	0.517000													6	97					0	0	0.248553	0	0
SELP	6403	broad.mit.edu	37	1	169582862	169582862	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:169582862G>A	ENST00000263686.6	-	4	588	c.551C>T	c.(550-552)tCc>tTc	p.S184F	SELP_ENST00000367786.2_Missense_Mutation_p.S184F|SELP_ENST00000367792.2_Missense_Mutation_p.S184F|SELP_ENST00000367788.2_Missense_Mutation_p.S184F|SELP_ENST00000367791.2_Missense_Mutation_p.S184F|SELP_ENST00000367794.2_Missense_Mutation_p.S184F|SELP_ENST00000367793.2_Missense_Mutation_p.S184F|SELP_ENST00000458599.2_Missense_Mutation_p.S184F	NM_003005.3	NP_002996.2	P16109	LYAM3_HUMAN	selectin P (granule membrane protein 140kDa, antigen CD62)	184	EGF-like.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			breast(1)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(9)|lung(32)|ovary(4)|pancreas(1)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	AGGGTAACAGGAGCAGGTGTA	0.468000													9	114					0	0	0.307466	0	0
PCNT	5116	broad.mit.edu	37	21	47805791	47805791	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:47805791C>T	ENST00000359568.5	+	17	3464	c.3357C>T	c.(3355-3357)tgC>tgT	p.C1119C	PCNT_ENST00000480896.1_3'UTR	NM_006031.5	NP_006022.3	O95613	PCNT_HUMAN	pericentrin	1119					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			NS(1)|breast(5)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(15)|liver(2)|lung(41)|ovary(5)|pancreas(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(2)	104	Breast(49;0.112)					TAGAAGAGTGCCGCTCCGAGT	0.502000													4	146					0	0	0.150653	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129382	248129382	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:248129382C>A	ENST00000366480.3	+	1	848	c.749C>A	c.(748-750)gCa>gAa	p.A250E	OR2L13_ENST00000366478.2_Intron	NM_001004491.1	NP_001004491.1	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK, member 2	250					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|breast(1)|central_nervous_system(2)|endometrium(1)|kidney(1)|large_intestine(2)|lung(25)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	36	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			AAAGGACAGGCAAAAGCTGTT	0.478000													47	148					1.51926e-22	1.95446e-22	0.870114	1	0
TET1	80312	broad.mit.edu	37	10	70446350	70446350	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:70446350G>A	ENST00000373644.4	+	11	5499	c.5290G>A	c.(5290-5292)Gag>Aag	p.E1764K		NM_030625.2	NP_085128.2	Q8NFU7	TET1_HUMAN	tet methylcytosine dioxygenase 1	1764					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(2)|ovary(5)|prostate(1)|upper_aerodigestive_tract(2)	21						GATGATGACAGAGGTTCTTGC	0.493000													38	51					0	0	0.840704	0	0
DDX11	1663	broad.mit.edu	37	12	31236920	31236920	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:31236920G>A	ENST00000251758.5	+	3	569	c.318G>A	c.(316-318)agG>agA	p.R106R	DDX11_ENST00000542838.1_Silent_p.R106R|DDX11_ENST00000545668.1_Silent_p.R106R|DDX11_ENST00000407793.2_Silent_p.R106R|DDX11_ENST00000350437.4_Silent_p.R106R|DDX11_ENST00000228264.6_Silent_p.R80R			Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	106	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(11)|large_intestine(5)|lung(23)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	57	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GCACCCCGAGGCCTGCTGGAG	0.557000										Multiple Myeloma(12;0.14)			26	33					0	0	0.693898	0	0
CTNND2	1501	broad.mit.edu	37	5	11565065	11565065	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:11565065C>T	ENST00000304623.8	-	3	467	c.278G>A	c.(277-279)aGc>aAc	p.S93N	CTNND2_ENST00000458100.2_5'UTR|CTNND2_ENST00000503622.1_Missense_Mutation_p.S2N|CTNND2_ENST00000511377.1_Missense_Mutation_p.S2N|CTNND2_ENST00000359640.2_Missense_Mutation_p.S93N	NM_001332.2	NP_001323.1	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	93					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			NS(1)|autonomic_ganglia(1)|breast(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(29)|liver(1)|lung(71)|ovary(4)|pancreas(2)|prostate(1)|skin(5)|upper_aerodigestive_tract(4)|urinary_tract(2)	136						CCTCATGCTGCTCATGCTGCC	0.542000													4	88					0	0	0.150653	0	0
ROCK2	9475	broad.mit.edu	37	2	11375869	11375869	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:11375869G>A	ENST00000315872.6	-	5	1130	c.682C>T	c.(682-684)Cta>Tta	p.L228L		NM_004850.3	NP_004841.2	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein kinase 2	228	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			breast(2)|central_nervous_system(1)|cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(6)|lung(10)|prostate(1)|skin(4)|stomach(3)|urinary_tract(2)	43	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		GCTAATTTTAGATGTCCATGT	0.368000													49	142					0	0	0.870114	0	0
EIF4G3	8672	broad.mit.edu	37	1	21226345	21226345	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:21226345G>C	ENST00000602326.1	-	14	2277	c.1694C>G	c.(1693-1695)tCt>tGt	p.S565C	EIF4G3_ENST00000264211.8_Missense_Mutation_p.S559C|EIF4G3_ENST00000537738.1_Missense_Mutation_p.S12C|EIF4G3_ENST00000400422.1_Missense_Mutation_p.S559C|EIF4G3_ENST00000374933.3_5'UTR|EIF4G3_ENST00000374935.3_Missense_Mutation_p.S279C|EIF4G3_ENST00000544689.1_Missense_Mutation_p.S102C|EIF4G3_ENST00000374937.3_Missense_Mutation_p.S565C|EIF4G3_ENST00000536266.1_Missense_Mutation_p.S163C	NM_001198802.1	NP_001185731.1	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4 gamma, 3	559					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(18)|lung(20)|ovary(1)|prostate(4)|skin(3)|stomach(1)|urinary_tract(3)	70		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TTTTAGGTCAGAGGGGTCTCT	0.413000													9	170					0	0	0.335167	0	0
LRP2	4036	broad.mit.edu	37	2	170059450	170059450	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:170059450G>A	ENST00000263816.3	-	43	8310	c.8025C>T	c.(8023-8025)tgC>tgT	p.C2675C		NM_004525.2	NP_004516.2	P98164	LRP2_HUMAN	low density lipoprotein receptor-related protein 2	2675	EGF-like 10.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			biliary_tract(1)|breast(16)|central_nervous_system(6)|cervix(2)|endometrium(24)|haematopoietic_and_lymphoid_tissue(2)|kidney(17)|large_intestine(70)|liver(1)|lung(117)|ovary(19)|pancreas(1)|prostate(2)|skin(17)|upper_aerodigestive_tract(7)|urinary_tract(13)	315				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTGGACACTGGCACTCGGCAC	0.493000													4	141					0	0	0.150653	0	0
REG1P	5969	broad.mit.edu	37	2	79364168	79364168	+	RNA	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:79364168T>A	ENST00000444841.1	-	0	285																											CTGATGATGCTGTCACTGACC	0.463000													18	21					0	0	0.520397	0	0
RICTOR	253260	broad.mit.edu	37	5	38967494	38967494	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:38967494C>T	ENST00000357387.3	-	13	1126	c.1096G>A	c.(1096-1098)Gat>Aat	p.D366N	RICTOR_ENST00000296782.5_Missense_Mutation_p.D366N	NM_152756.3	NP_689969.2	Q6R327	RICTR_HUMAN	RPTOR independent companion of MTOR, complex 2	366					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			NS(1)|breast(4)|central_nervous_system(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(14)|lung(33)|ovary(3)|prostate(3)|skin(5)	75	all_lung(31;0.000396)					ACAAAGCCATCTGAAAGCCTC	0.363000													4	71					0	0	0.217242	0	0
OR51L1	119682	broad.mit.edu	37	11	5020850	5020850	+	Nonsense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:5020850C>G	ENST00000321543.1	+	1	638	c.638C>G	c.(637-639)tCa>tGa	p.S213*		NM_001004755.1	NP_001004755.1	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L, member 1	213					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(3)|lung(19)|skin(2)|stomach(1)	31		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTGTGGATTCAATCTTCATA	0.408000													12	102					0	0	0.387290	0	0
FOXG1	2290	broad.mit.edu	37	14	29237817	29237817	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:29237817G>A	ENST00000382535.3	+	2	1701	c.1332G>A	c.(1330-1332)tcG>tcA	p.S444S	FOXG1_ENST00000313071.4_Silent_p.S444S			P55316	FOXG1_HUMAN	forkhead box G1	444					axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(9)|lung(23)|ovary(2)|pancreas(1)|prostate(1)|skin(1)|urinary_tract(2)	43			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		CCTCCACGTCGCCGCAGGCCC	0.602000													6	47					0	0	0.248553	0	0
CCDC110	256309	broad.mit.edu	37	4	186379522	186379522	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:186379522G>A	ENST00000307588.3	-	6	2294	c.2219C>T	c.(2218-2220)aCt>aTt	p.T740I	CCDC110_ENST00000393540.3_Missense_Mutation_p.T703I|CCDC110_ENST00000510617.1_Missense_Mutation_p.T740I	NM_152775.3	NP_689988.1	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110	740						nucleus				NS(1)|breast(1)|central_nervous_system(2)|endometrium(6)|kidney(3)|large_intestine(8)|lung(9)	30		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TTTGTCTTCAGTAAGTCTACT	0.299000													5	9					0	0	0.184627	0	0
RPL10	6134	broad.mit.edu	37	X	153628150	153628150	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:153628150A>C	ENST00000424325.2	+	5	385	c.197A>C	c.(196-198)gAg>gCg	p.E66A	RPL10_ENST00000406022.2_Missense_Mutation_p.E15A|RPL10_ENST00000369817.2_Missense_Mutation_p.E66A	NM_001256577.1|NM_001256580.1|NM_006013.3	NP_001243506.1|NP_001243509.1|NP_006004.2	P27635	RL10_HUMAN	ribosomal protein L10	66					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|endoplasmic reticulum	structural constituent of ribosome			large_intestine(1)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	8	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTAGCCCTGGAGGCTGCCCGA	0.502000													6	37					0	0	0.248553	0	0
OR2A12	346525	broad.mit.edu	37	7	143792758	143792758	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:143792758G>T	ENST00000408949.2	+	1	618	c.558G>T	c.(556-558)ttG>ttT	p.L186F		NM_001004135.1	NP_001004135.1	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A, member 12	186					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(4)|lung(14)|ovary(2)	25	Melanoma(164;0.0783)					TATTCAAATTGGCCTGTGCTG	0.493000													116	205					1.45418e-49	1.95207e-49	0.870114	1	0
AP1G2	8906	broad.mit.edu	37	14	24032623	24032623	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:24032623C>T	ENST00000308724.5	-	13	2131	c.1376G>A	c.(1375-1377)cGc>cAc	p.R459H	RP11-66N24.3_ENST00000555968.1_RNA|AP1G2_ENST00000397120.3_Missense_Mutation_p.R459H	NM_003917.2	NP_003908.1	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2 subunit	459					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(10)|lung(4)|ovary(1)|pancreas(1)|stomach(1)	28	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		ATTGTAGAGGCGGCGCACAGA	0.632000											OREG0022605	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	19					0	0	0.248553	0	0
PCNX	22990	broad.mit.edu	37	14	71479892	71479892	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:71479892G>A	ENST00000304743.2	+	11	3415	c.2969G>A	c.(2968-2970)aGa>aAa	p.R990K	PCNX_ENST00000238570.5_Missense_Mutation_p.R990K|PCNX_ENST00000439984.3_Missense_Mutation_p.R879K	NM_014982.2	NP_055797.2	Q96RV3	PCX1_HUMAN	pecanex homolog (Drosophila)	990						integral to membrane				NS(2)|biliary_tract(1)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(14)|liver(2)|lung(40)|ovary(1)|prostate(7)|skin(2)|urinary_tract(1)	87			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AACTTTGACAGACTCACACTT	0.398000													4	184					0	0	0.217242	0	0
LOC645166	645166	broad.mit.edu	37	1	148933289	148933289	+	RNA	SNP	A	A	G	rs9729175	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:148933289A>G	ENST00000539543.1	+	0	176					NR_027355.1																						TGCTGCCCGCAGGATATTGTG	0.562000													3	3					0	0	0.184627	0	0
CACNA1A	773	broad.mit.edu	37	19	13325397	13325397	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:13325397G>A	ENST00000360228.5	-	39	5756	c.5757C>T	c.(5755-5757)gaC>gaT	p.D1919D	CACNA1A_ENST00000573710.2_Silent_p.D1920D	NM_000068.3|NM_001127222.1|NM_001174080.1|NM_023035.2	NP_000059.3|NP_001120694.1|NP_001167551.1|NP_075461.2	O00555	CAC1A_HUMAN	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	1920					cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			breast(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(25)|prostate(2)|urinary_tract(1)	42			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GCAGCTCAGCGTCCATCTGCT	0.582000													13	22					0	0	0.479597	0	0
DCN	1634	broad.mit.edu	37	12	91572168	91572168	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:91572168G>A	ENST00000551354.1	-	2	366	c.162C>T	c.(160-162)tgC>tgT	p.C54C	DCN_ENST00000425043.1_Silent_p.C54C|DCN_ENST00000393155.1_Silent_p.C54C|DCN_ENST00000547568.2_Silent_p.C54C|DCN_ENST00000228329.5_Silent_p.C54C|DCN_ENST00000552962.1_Silent_p.C54C|DCN_ENST00000441303.2_Silent_p.C54C|DCN_ENST00000303320.3_Silent_p.C54C|DCN_ENST00000550099.1_Silent_p.C54C|DCN_ENST00000546745.1_Silent_p.C54C|DCN_ENST00000546370.1_Silent_p.C54C|DCN_ENST00000052754.5_Silent_p.C54C|DCN_ENST00000456569.2_Silent_p.C54C|DCN_ENST00000420120.2_Silent_p.C54C			P07585	PGS2_HUMAN	decorin	54	Cys-rich.				organ morphogenesis	extracellular space				central_nervous_system(2)|cervix(1)|kidney(2)|large_intestine(4)|liver(1)|lung(8)|ovary(1)|skin(1)	20						AGCGGAAGGGGCACACTGGGC	0.502000											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	113					0	0	0.307466	0	0
OBSCN	84033	broad.mit.edu	37	1	228491471	228491471	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:228491471G>A	ENST00000570156.2	+	52	13908	c.13834G>A	c.(13834-13836)Gtg>Atg	p.V4612M	OBSCN_ENST00000366709.4_Intron|OBSCN_ENST00000422127.1_Intron|OBSCN_ENST00000366707.4_Missense_Mutation_p.V1302M|OBSCN_ENST00000284548.11_Intron|OBSCN_ENST00000359599.6_3'UTR	NM_001271223.2	NP_001258152.2	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	3655	Fibronectin type-III 3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			NS(2)|breast(7)|central_nervous_system(5)|cervix(2)|endometrium(30)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(37)|lung(89)|ovary(8)|pancreas(3)|prostate(13)|skin(6)|stomach(11)|upper_aerodigestive_tract(2)|urinary_tract(3)	223		Prostate(94;0.0405)				GGCGGCCCCCGTGGAGTGGCG	0.612000													6	213					0	0	0.278610	0	0
NLRP3	114548	broad.mit.edu	37	1	247611770	247611770	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:247611770G>T	ENST00000366497.2	+	9	3684	c.2904G>T	c.(2902-2904)aaG>aaT	p.K968N	NLRP3_ENST00000391827.2_Missense_Mutation_p.K968N|NLRP3_ENST00000336119.3_Missense_Mutation_p.K1025N|NLRP3_ENST00000391828.3_Missense_Mutation_p.K1025N|NLRP3_ENST00000348069.2_Missense_Mutation_p.K911N|NLRP3_ENST00000366496.2_Missense_Mutation_p.K968N	NM_001127461.2	NP_001120933.1	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3	1025					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			NS(1)|breast(3)|endometrium(6)|kidney(1)|large_intestine(19)|lung(85)|ovary(9)|pancreas(2)|prostate(4)|skin(8)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	142	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AAGAAGAAAAGCCTGAGCTGA	0.498000													4	201					0.184627	0.206348	0.184627	1	0
XIAP	331	broad.mit.edu	37	X	123020085	123020085	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:123020085C>A	ENST00000371199.3	+	2	872	c.573C>A	c.(571-573)taC>taA	p.Y191*	XIAP_ENST00000434753.3_Nonsense_Mutation_p.Y191*|XIAP_ENST00000355640.3_Nonsense_Mutation_p.Y191*|XIAP_ENST00000468691.1_Intron	NM_001167.3	NP_001158.2	P98170	XIAP_HUMAN	X-linked inhibitor of apoptosis	191					anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			breast(2)|endometrium(3)|kidney(3)|large_intestine(2)|lung(12)|ovary(3)	25						GACTCTACTACACAGGTATTG	0.463000									X-linked Lymphoproliferative syndrome				11	46					0.0809354	0.091702	0.387290	1	0
ADNP	23394	broad.mit.edu	37	20	49510670	49510670	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr20:49510670G>C	ENST00000396029.3	-	5	1148	c.581C>G	c.(580-582)gCa>gGa	p.A194G	ADNP_ENST00000349014.3_Missense_Mutation_p.A194G|ADNP_ENST00000396032.3_Missense_Mutation_p.A194G|ADNP_ENST00000371602.4_Missense_Mutation_p.A194G	NM_015339.2	NP_056154.1	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector homeobox	194						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(4)|endometrium(7)|kidney(1)|large_intestine(13)|lung(7)|ovary(2)|prostate(2)|skin(2)	39						TATGTAAGGTGCTGCCACATG	0.448000													3	124					0	0	0.115264	0	0
FAM198B	51313	broad.mit.edu	37	4	159092384	159092384	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:159092384C>G	ENST00000296530.8	-	2	765	c.144G>C	c.(142-144)ttG>ttC	p.L48F	FAM198B_ENST00000585682.1_Missense_Mutation_p.L48F|RP11-597D13.9_ENST00000503611.1_RNA|FAM198B_ENST00000393807.5_Missense_Mutation_p.L48F|FAM198B_ENST00000589306.1_Intron|RP11-597D13.9_ENST00000509463.1_RNA|FAM198B_ENST00000592057.1_Missense_Mutation_p.L48F	NM_016613.6	NP_057697.2	Q6UWH4	F198B_HUMAN	family with sequence similarity 198, member B	48						Golgi membrane|integral to membrane				haematopoietic_and_lymphoid_tissue(1)|large_intestine(8)|lung(14)|skin(2)|urinary_tract(1)	26						CCAGGAAGCCCAAGTAGATGG	0.667000													3	108					0	0	0.184627	0	0
RASAL3	64926	broad.mit.edu	37	19	15572099	15572099	+	Silent	SNP	T	T	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:15572099T>C	ENST00000343625.6	-	4	554	c.474A>G	c.(472-474)cgA>cgG	p.R158R		NM_022904.1	NP_075055.1	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	158					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(10)|skin(1)	18						CCCGGGGCCTTCGAGGACCCT	0.642000													3	27					0	0	0.115264	0	0
TRIM58	25893	broad.mit.edu	37	1	248039301	248039301	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:248039301A>T	ENST00000366481.3	+	6	1019	c.971A>T	c.(970-972)aAc>aTc	p.N324I	OR2W3_ENST00000537741.1_5'UTR	NM_015431.3	NP_056246.3	Q8NG06	TRI58_HUMAN	tripartite motif containing 58	324	B30.2/SPRY.					intracellular	zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(4)|lung(39)|ovary(4)|pancreas(1)|skin(7)|stomach(1)	63	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GATGTCCCCAACAACCCTGAG	0.592000													78	176					0	0	0.870114	0	0
IGLV1-40	28825	broad.mit.edu	37	22	22764377	22764377	+	RNA	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:22764377C>A	ENST00000390299.2	+	0	170																											GTCACCATCTCCTGCACTGGG	0.602000													55	157					1.72039e-30	2.24834e-30	0.870114	1	0
PTEN	5728	broad.mit.edu	37	10	89711906	89711906	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:89711906T>A	ENST00000371953.3	+	6	1881	c.524T>A	c.(523-525)gTg>gAg	p.V175E		NM_000314.4	NP_000305.3	P60484	PTEN_HUMAN	phosphatase and tensin homolog	175	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.0?(37)|p.R55fs*1(5)|p.?(4)|p.V166fs*17(3)|p.G165fs*9(3)|p.Y27fs*1(2)|p.G165_*404del(1)|p.V175fs*3(1)|p.R172fs*5(1)		NS(28)|autonomic_ganglia(2)|biliary_tract(6)|bone(5)|breast(92)|central_nervous_system(676)|cervix(26)|endometrium(1068)|eye(8)|haematopoietic_and_lymphoid_tissue(137)|kidney(24)|large_intestine(98)|liver(20)|lung(91)|meninges(2)|oesophagus(2)|ovary(82)|pancreas(6)|prostate(129)|salivary_gland(5)|skin(127)|soft_tissue(19)|stomach(30)|testis(1)|thyroid(29)|upper_aerodigestive_tract(29)|urinary_tract(12)|vulva(17)	2771		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		AGGCGCTATGTGTATTATTAT	0.353000		31	"""D, Mis, N, F, S"""		"""glioma,  prostate, endometrial"""	"""harmartoma, glioma,  prostate, endometrial"""			Proteus syndrome;Juvenile Polyposis;Hereditary Mixed Polyposis Syndrome type 1;Cowden syndrome;Bannayan-Riley-Ruvalcaba syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			18	106					0	0	0.539581	0	0
CNTN3	5067	broad.mit.edu	37	3	74334529	74334529	+	Silent	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:74334529C>G	ENST00000263665.6	-	19	2658	c.2631G>C	c.(2629-2631)acG>acC	p.T877T		NM_020872.1	NP_065923.1	Q9P232	CNTN3_HUMAN	contactin 3 (plasmacytoma associated)	877	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			NS(2)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(14)|lung(39)|ovary(1)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	83		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CCCGGACAGCCGTGTAATAGG	0.498000													18	214					0	0	0.575678	0	0
HYDIN	54768	broad.mit.edu	37	16	71054178	71054178	+	Missense_Mutation	SNP	T	T	C	rs117718337		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:71054178T>C	ENST00000393567.2	-	22	3379	c.3229A>G	c.(3229-3231)Ata>Gta	p.I1077V	HYDIN_ENST00000448089.2_Missense_Mutation_p.I1029V	NM_001270974.1	NP_001257903.1	Q4G0P3	HYDIN_HUMAN	HYDIN, axonemal central pair apparatus protein	1077			I -> V (in dbSNP:rs6416709).					p.I1077V(3)|p.I1029V(3)		breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(17)|lung(12)|ovary(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)	43		Ovarian(137;0.0654)				ATGTTCTTTATGGCCAAGGGC	0.418000													5	77					0	0	0.184627	0	0
COL4A4	1286	broad.mit.edu	37	2	227924919	227924919	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:227924919C>T	ENST00000396625.3	-	27	2304	c.2097G>A	c.(2095-2097)ctG>ctA	p.L699L	COL4A4_ENST00000329662.7_Silent_p.L699L	NM_000092.4	NP_000083.3	P53420	CO4A4_HUMAN	collagen, type IV, alpha 4	699	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			breast(2)|central_nervous_system(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(15)|lung(35)|ovary(5)|pancreas(3)|prostate(2)|skin(12)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(3)	98		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CTGAACCACTCAGCCCAGGGG	0.413000													12	77					0	0	0.411799	0	0
KIF7	374654	broad.mit.edu	37	15	90188652	90188652	+	Silent	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:90188652C>A	ENST00000394412.3	-	9	2029	c.1953G>T	c.(1951-1953)gcG>gcT	p.A651A		NM_198525.2	NP_940927.2	Q2M1P5	KIF7_HUMAN	kinesin family member 7	651					microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			central_nervous_system(2)|cervix(1)|endometrium(2)|large_intestine(5)|lung(11)|ovary(2)|stomach(1)|urinary_tract(1)	25	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GGCGTGCCCCCGCCCTCTGAC	0.642000													50	63					1.4374e-25	1.86862e-25	0.870114	1	0
HBP1	26959	broad.mit.edu	37	7	106826354	106826354	+	Silent	SNP	T	T	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:106826354T>C	ENST00000222574.4	+	4	693	c.507T>C	c.(505-507)caT>caC	p.H169H	HBP1_ENST00000468410.1_Silent_p.H169H|HBP1_ENST00000485846.1_Silent_p.H169H	NM_012257.3	NP_036389.2	O60381	HBP1_HUMAN	HMG-box transcription factor 1	169					cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			large_intestine(4)|lung(3)|prostate(1)|skin(2)	10						CTCATCACCATTGGAAGGAGG	0.413000													8	203					0	0	0.278610	0	0
ZNF154	7710	broad.mit.edu	37	19	58213862	58213862	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:58213862T>A	ENST00000512439.2	-	3	651	c.455A>T	c.(454-456)cAg>cTg	p.Q152L	AC003006.7_ENST00000599221.1_Intron|AC003006.7_ENST00000596085.1_Intron|ZNF154_ENST00000426889.1_Missense_Mutation_p.Q152L			Q13106	ZN154_HUMAN	zinc finger protein 154	152						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			endometrium(1)|kidney(1)|large_intestine(7)|lung(3)	12		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GAGGGTTCTCTGCTGCTGAAC	0.443000													123	286					0	0	0.870114	0	0
SLC45A2	51151	broad.mit.edu	37	5	33984667	33984667	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:33984667C>T	ENST00000382102.3	-	1	79	c.22G>A	c.(22-24)Gct>Act	p.A8T	SLC45A2_ENST00000296589.4_Missense_Mutation_p.A8T|SLC45A2_ENST00000342059.3_Missense_Mutation_p.A8T|SLC45A2_ENST00000509381.1_Missense_Mutation_p.A8T|SLC45A2_ENST00000345083.5_Missense_Mutation_p.A8T	NM_001012509.2	NP_001012527.1	Q9UMX9	S45A2_HUMAN	solute carrier family 45, member 2	8					melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				breast(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|lung(25)|ovary(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	48						TGGCGGCCAGCCTGCCCACTG	0.567000													53	133					0	0	0.870114	0	0
SYNE2	23224	broad.mit.edu	37	14	64518664	64518664	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:64518664G>C	ENST00000358025.3	+	48	8263	c.8033G>C	c.(8032-8034)gGa>gCa	p.G2678A	SYNE2_ENST00000554584.1_Missense_Mutation_p.G2711A|SYNE2_ENST00000357395.3_5'UTR|SYNE2_ENST00000344113.4_Missense_Mutation_p.G2678A	NM_182914.2	NP_878918.2	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2678					centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding	p.G2678V(2)		NS(5)|breast(17)|central_nervous_system(3)|cervix(8)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(21)|large_intestine(34)|lung(75)|ovary(10)|pancreas(2)|prostate(8)|skin(8)|stomach(1)|upper_aerodigestive_tract(9)|urinary_tract(4)	224				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ACCAAGCATGGATTTTCTGTT	0.433000													20	180					0	0	0.624587	0	0
TEKT4P2	100132288	broad.mit.edu	37	21	9908264	9908264	+	RNA	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:9908264G>T	ENST00000416067.1	-	0	528					NR_037872.1|NR_038327.1																						CTGCCTCAGAGGCCCAGGCAG	0.617000													4	7					3.59834e-05	4.23233e-05	0.217242	1	0
VPS33A	65082	broad.mit.edu	37	12	122734439	122734439	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:122734439C>T	ENST00000267199.4	-	6	866	c.754G>A	c.(754-756)Gaa>Aaa	p.E252K	RP11-512M8.5_ENST00000535844.1_Missense_Mutation_p.E213K	NM_022916.4	NP_075067.2	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33 homolog A (S. cerevisiae)	252					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			NS(2)|breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(4)|lung(13)|ovary(1)|skin(2)	28	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		CCATAAATTTCATCAATGAGT	0.348000													3	50					0	0	0.150653	0	0
GATA1	2623	broad.mit.edu	37	X	48650256	48650256	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:48650256C>G	ENST00000376670.3	+	3	337	c.226C>G	c.(226-228)Cag>Gag	p.Q76E	GATA1_ENST00000376665.3_Missense_Mutation_p.Q76E	NM_002049.3	NP_002040.1	P15976	GATA1_HUMAN	GATA binding protein 1 (globin transcription factor 1)	76					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74fs*60(1)|p.Q76E(1)		breast(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(259)|large_intestine(8)|lung(9)|prostate(1)	283						AACAGTCTTTCAGGTGTACCC	0.587000			"""Mis, F"""		megakaryoblastic leukemia of Downs Syndrome								110	211					0	0	0.870114	0	0
CSMD3	114788	broad.mit.edu	37	8	113256648	113256648	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:113256648C>G	ENST00000297405.5	-	65	10621	c.10377G>C	c.(10375-10377)tgG>tgC	p.W3459C	CSMD3_ENST00000455883.2_Missense_Mutation_p.W3290C|CSMD3_ENST00000352409.3_Missense_Mutation_p.W3389C|CSMD3_ENST00000343508.3_Missense_Mutation_p.W3419C	NM_198123.1	NP_937756.1	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3	3459	Sushi 28.					integral to membrane|plasma membrane				breast(7)|central_nervous_system(6)|endometrium(44)|haematopoietic_and_lymphoid_tissue(8)|kidney(36)|large_intestine(72)|liver(5)|lung(389)|ovary(24)|prostate(6)|skin(23)|upper_aerodigestive_tract(19)|urinary_tract(7)	646						CTTTTCCAGTCCAGGTGTTAT	0.403000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	148					0	0	0.307466	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58601464	58601464	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:58601464G>A	ENST00000240727.6	-	2	570	c.171C>T	c.(169-171)taC>taT	p.Y57Y	ZSCAN18_ENST00000600404.1_Silent_p.Y113Y|ZSCAN18_ENST00000421612.2_Intron|ZSCAN18_ENST00000601144.1_Silent_p.Y57Y	NM_023926.4	NP_076415.3	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	57	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(8)|skin(3)	19		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CAGCCTCCTGGTAGACAAATT	0.662000													4	16					0	0	0.184627	0	0
FAM138D	677784	broad.mit.edu	37	12	68657	68657	+	RNA	SNP	T	T	C	rs142484764	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:68657T>C	ENST00000546223.1	+	0	777																											TAGTCTCCCCTCCACCCCTCT	0.557000													4	8					0	0	0.217242	0	0
FMR1	2332	broad.mit.edu	37	X	147010237	147010237	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:147010237C>T	ENST00000218200.8	+	5	560	c.331C>T	c.(331-333)Cgt>Tgt	p.R111C	FMR1_ENST00000439526.2_Missense_Mutation_p.R111C|FMR1_ENST00000334557.6_Missense_Mutation_p.R111C|FMR1_ENST00000370470.1_Missense_Mutation_p.R111C|FMR1_ENST00000370475.4_Missense_Mutation_p.R111C|FMR1_ENST00000370477.1_Missense_Mutation_p.R111C|FMR1_ENST00000370471.3_Missense_Mutation_p.R111C	NM_001185076.1|NM_001185082.1	NP_001172005.1|NP_001172011.1	Q06787	FMR1_HUMAN	fragile X mental retardation 1	111					mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			NS(1)|breast(1)|endometrium(7)|kidney(1)|large_intestine(8)|lung(13)|ovary(2)|pancreas(1)|upper_aerodigestive_tract(1)	35	Acute lymphoblastic leukemia(192;6.56e-05)					CACAATTGAACGTCTAAGATC	0.338000									Fragile X syndrome				84	171					0	0	0.870114	0	0
XPR1	9213	broad.mit.edu	37	1	180772724	180772724	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:180772724C>G	ENST00000367590.4	+	4	622	c.424C>G	c.(424-426)Cta>Gta	p.L142V	XPR1_ENST00000367589.3_Missense_Mutation_p.L142V	NM_004736.3	NP_004727.2	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor 1	142	SPX.					integral to plasma membrane	G-protein coupled receptor activity			breast(1)|endometrium(3)|kidney(2)|large_intestine(15)|lung(7)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(5)	35						CTACCTCAGTCTAATCCTGCT	0.393000													4	207					0	0	0.150653	0	0
DCUN1D2	55208	broad.mit.edu	37	13	114128538	114128538	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:114128538G>A	ENST00000332592.3	-	2	56	c.22C>T	c.(22-24)Ctg>Ttg	p.L8L	DCUN1D2-AS_ENST00000414992.1_RNA|DCUN1D2_ENST00000375399.2_Silent_p.L141L|DCUN1D2_ENST00000478244.1_Silent_p.L141L			Q6PH85	DCNL2_HUMAN	DCN1, defective in cullin neddylation 1, domain containing 2	141	UBA-like.									breast(1)|endometrium(1)|large_intestine(1)|lung(3)|stomach(1)	7	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.029)|GBM - Glioblastoma multiforme(44;0.234)			AGTCTTGGCAGAAGAGCCTTT	0.507000													13	198					0	0	0.457914	0	0
KLHL4	56062	broad.mit.edu	37	X	86887308	86887308	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:86887308G>C	ENST00000373119.4	+	7	1568	c.1423G>C	c.(1423-1425)Gat>Cat	p.D475H	KLHL4_ENST00000373114.4_Missense_Mutation_p.D475H	NM_019117.4	NP_061990.2	Q9C0H6	KLHL4_HUMAN	kelch-like family member 4	475						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			NS(1)|biliary_tract(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(19)|lung(29)|ovary(2)|prostate(1)|skin(1)	67						CGCAGTTATTGATAATAAGCT	0.413000													6	103					0	0	0.248553	0	0
OR4D5	219875	broad.mit.edu	37	11	123810832	123810832	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:123810832G>T	ENST00000307033.2	+	1	583	c.509G>T	c.(508-510)gGg>gTg	p.G170V		NM_001001965.1	NP_001001965.1	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D, member 5	170					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			autonomic_ganglia(1)|endometrium(2)|kidney(2)|large_intestine(4)|lung(17)|ovary(1)|pancreas(1)|prostate(7)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	41		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCATTCTGTGGGCCTGACAAG	0.473000													40	36					1.76056e-25	2.27674e-25	0.859065	1	0
ANKRD6	22881	broad.mit.edu	37	6	90322046	90322046	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:90322046G>A	ENST00000369408.5	+	6	822	c.473G>A	c.(472-474)cGc>cAc	p.R158H	ANKRD6_ENST00000485637.1_Missense_Mutation_p.R158H|ANKRD6_ENST00000447838.2_Missense_Mutation_p.R158H|ANKRD6_ENST00000520793.1_Missense_Mutation_p.R125H|ANKRD6_ENST00000522441.1_Missense_Mutation_p.R158H|ANKRD6_ENST00000520886.2_3'UTR|ANKRD6_ENST00000339746.4_Missense_Mutation_p.R158H	NM_001242813.1	NP_001229742.1	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	158							protein binding			NS(1)|endometrium(3)|large_intestine(7)|lung(3)|ovary(3)|pancreas(1)|prostate(1)|stomach(2)	21		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		CAGAGCACGCGCGTCCTCCTG	0.542000													4	5					0	0	0.150653	0	0
ACP2	53	broad.mit.edu	37	11	47264815	47264815	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:47264815A>G	ENST00000256997.3	-	8	946	c.830T>C	c.(829-831)cTc>cCc	p.L277P	ACP2_ENST00000529444.1_Missense_Mutation_p.L214P|ACP2_ENST00000537863.1_Missense_Mutation_p.L90P|ACP2_ENST00000533929.1_Missense_Mutation_p.L249P|ACP2_ENST00000525230.1_5'UTR|ACP2_ENST00000527256.1_Missense_Mutation_p.L245P	NM_001610.2	NP_001601.1	P11117	PPAL_HUMAN	acid phosphatase 2, lysosomal	277						integral to membrane|lysosomal lumen|lysosomal membrane	acid phosphatase activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(2)|ovary(1)|prostate(1)	10						CAGCTTGGGGAGCTGGGAGGT	0.587000													4	143					0	0	0.217242	0	0
SOCS5	9655	broad.mit.edu	37	2	46987135	46987135	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:46987135G>A	ENST00000306503.5	+	2	1638	c.1466G>A	c.(1465-1467)cGc>cAc	p.R489H	SOCS5_ENST00000394861.2_Missense_Mutation_p.R489H	NM_014011.4	NP_054730.1	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	489	SOCS box.				cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(5)|lung(9)|ovary(2)	22		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TATATCTGTCGCGCGGTAATC	0.373000													5	98					0	0	0.217242	0	0
CENPF	1063	broad.mit.edu	37	1	214826278	214826278	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:214826278C>T	ENST00000366955.3	+	16	8436	c.8268C>T	c.(8266-8268)ctC>ctT	p.L2756L	CENPF_ENST00000467765.1_3'UTR	NM_016343.3	NP_057427.3	P49454	CENPF_HUMAN	centromere protein F, 350/400kDa	2852	Sufficient for centromere localization.|Sufficient for self-association.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			NS(2)|breast(2)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(37)|lung(47)|ovary(7)|prostate(3)|skin(6)|stomach(1)|urinary_tract(1)	126				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AAGAAGAGCTCAATAATTCAT	0.338000													10	247					0	0	0.361761	0	0
ALX4	60529	broad.mit.edu	37	11	44296990	44296990	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:44296990G>A	ENST00000329255.3	-	2	788	c.685C>T	c.(685-687)Ctg>Ttg	p.L229L		NM_021926.3	NP_068745.2	Q9H161	ALX4_HUMAN	ALX homeobox 4	229					hair follicle development					central_nervous_system(1)|endometrium(2)|large_intestine(1)|lung(10)|prostate(1)|upper_aerodigestive_tract(1)	16						ACCTTCTCCAGCTCCTCCAGC	0.612000													97	246					0	0	0.870114	0	0
C15orf38	348110	broad.mit.edu	37	15	90446603	90446603	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:90446603C>T	ENST00000357484.5	-	5	637	c.517G>A	c.(517-519)Gcc>Acc	p.A173T	C15orf38_ENST00000460685.1_Missense_Mutation_p.A77T|C15orf38-AP3S2_ENST00000398333.3_Missense_Mutation_p.A173T	NM_182616.2	NP_872422.1			chromosome 15 open reading frame 38											breast(3)|endometrium(1)|large_intestine(3)|lung(2)|ovary(1)	10	Melanoma(11;0.0171)|Lung NSC(78;0.0181)|all_lung(78;0.0384)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.223)			TCAAGTTTGGCCAATGAATCT	0.498000													4	123					0	0	0.150653	0	0
TPH1	7166	broad.mit.edu	37	11	18042606	18042606	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:18042606C>A	ENST00000250018.2	-	10	1829	c.1267G>T	c.(1267-1269)Gag>Tag	p.E423*	TPH1_ENST00000341556.2_Nonsense_Mutation_p.E423*|RP1-59M18.2_ENST00000525523.1_RNA	NM_004179.2	NP_004170.1	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	423					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			NS(1)|breast(1)|endometrium(1)|kidney(3)|large_intestine(3)|lung(14)|prostate(1)|stomach(1)	25					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	TGCTGCAGCTCATTCATGGCA	0.443000													9	273					1.76689e-08	2.12889e-08	0.335167	1	0
CACNG8	59283	broad.mit.edu	37	19	54466466	54466466	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:54466466A>T	ENST00000270458.2	+	1	173	c.70A>T	c.(70-72)Acg>Tcg	p.T24S		NM_031895.5	NP_114101.4	Q8WXS5	CCG8_HUMAN	calcium channel, voltage-dependent, gamma subunit 8	24					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic density|postsynaptic membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity			kidney(1)|large_intestine(3)|lung(8)|urinary_tract(1)	13	all_cancers(19;0.0385)|all_epithelial(19;0.0207)|all_lung(19;0.145)|Lung NSC(19;0.168)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.162)		GGTGCTGCTGACGACGGTGGG	0.667000													5	8					0	0	0.217242	0	0
LILRB1	10859	broad.mit.edu	37	19	55144077	55144077	+	Missense_Mutation	SNP	C	C	A	rs61737881		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:55144077C>A	ENST00000396331.1	+	7	1181	c.824C>A	c.(823-825)gCt>gAt	p.A275D	LILRB1_ENST00000396321.2_Missense_Mutation_p.A275D|LILRB1_ENST00000396315.1_Missense_Mutation_p.A275D|LILRB1_ENST00000396332.4_Missense_Mutation_p.A275D|LILRB1_ENST00000418536.2_Missense_Mutation_p.A275D|LILRB1_ENST00000396317.1_Missense_Mutation_p.A275D|LILRB1_ENST00000396327.3_Missense_Mutation_p.A275D|LILRB1_ENST00000324602.7_Missense_Mutation_p.A275D|LILRB1_ENST00000434867.2_Missense_Mutation_p.A275D|LILRB1_ENST00000448689.1_Missense_Mutation_p.A275D|LILRB1_ENST00000427581.2_Missense_Mutation_p.A311D	NM_006669.3	NP_006660.3	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1	275	Ig-like C2-type 3.				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			NS(2)|breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(13)|lung(38)|ovary(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	74				GBM - Glioblastoma multiforme(193;0.0188)		CAGCCCCAGGCTGGGCTCTCC	0.607000										HNSCC(37;0.09)			23	52					1.9806e-07	2.36332e-07	0.624587	1	0
ZNF14	7561	broad.mit.edu	37	19	19822504	19822504	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:19822504T>A	ENST00000344099.3	-	4	1724	c.1586A>T	c.(1585-1587)aAg>aTg	p.K529M		NM_021030.2	NP_066358.2	P17017	ZNF14_HUMAN	zinc finger protein 14	529					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|cervix(2)|endometrium(1)|large_intestine(9)|lung(8)|ovary(4)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	32		Renal(1328;0.0474)				CTCAAAAGGCTTATTTCCAGT	0.398000													34	72					0	0	0.769981	0	0
MBD1	4152	broad.mit.edu	37	18	47803524	47803524	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:47803524C>T	ENST00000591416.1	-	3	592	c.161G>A	c.(160-162)gGc>gAc	p.G54D	MBD1_ENST00000349085.2_Missense_Mutation_p.G54D|MBD1_ENST00000347968.3_Missense_Mutation_p.G54D|MBD1_ENST00000339998.6_Missense_Mutation_p.G54D|MBD1_ENST00000353909.3_Missense_Mutation_p.G54D|MBD1_ENST00000382948.5_Missense_Mutation_p.G54D|MBD1_ENST00000587605.1_Missense_Mutation_p.G54D|MBD1_ENST00000398488.1_Missense_Mutation_p.G54D|MBD1_ENST00000269471.5_Missense_Mutation_p.G54D|MBD1_ENST00000398493.1_Missense_Mutation_p.G54D|MBD1_ENST00000585672.1_Missense_Mutation_p.G54D|MBD1_ENST00000457839.2_Missense_Mutation_p.G54D|MBD1_ENST00000588937.1_Missense_Mutation_p.G54D|MBD1_ENST00000398495.2_Missense_Mutation_p.G54D|MBD1_ENST00000424334.2_Missense_Mutation_p.G80D|MBD1_ENST00000591535.1_Missense_Mutation_p.G54D|MBD1_ENST00000590208.1_Missense_Mutation_p.G54D|MBD1_ENST00000585595.1_Missense_Mutation_p.G54D|MBD1_ENST00000436910.1_Missense_Mutation_p.G54D|MBD1_ENST00000269468.5_Missense_Mutation_p.G54D			Q9UIS9	MBD1_HUMAN	methyl-CpG binding domain protein 1	54	MBD.				negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|nuclear speck	methyl-CpG binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			breast(3)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(5)|lung(14)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	36						ACACGCAGGGCCCAGGTATCG	0.542000													16	37					0	0	0.479597	0	0
KCND2	3751	broad.mit.edu	37	7	120373017	120373017	+	Silent	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:120373017G>C	ENST00000331113.4	+	2	2141	c.1176G>C	c.(1174-1176)ctG>ctC	p.L392L		NM_012281.2	NP_036413.1	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related subfamily, member 2	392					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			NS(2)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(2)|large_intestine(11)|lung(35)|ovary(3)|pancreas(1)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	75	all_neural(327;0.117)					TCTGTTCGCTGAGTGGGGTCT	0.413000													20	254					0	0	0.575678	0	0
EVC	2121	broad.mit.edu	37	4	5720978	5720978	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:5720978G>C	ENST00000382674.2	+	2	362	c.178G>C	c.(178-180)Gac>Cac	p.D60H	EVC_ENST00000509451.1_Missense_Mutation_p.D60H|EVC_ENST00000264956.6_Missense_Mutation_p.D60H			P57679	EVC_HUMAN	Ellis van Creveld syndrome	60					muscle organ development	integral to membrane				NS(1)|breast(1)|endometrium(2)|large_intestine(10)|lung(11)|ovary(1)|skin(1)|stomach(1)	28		Myeloproliferative disorder(84;0.117)				GTTTTAGAAAGACGACACTCA	0.527000													56	118					0	0	0.870114	0	0
SSX2IP	117178	broad.mit.edu	37	1	85136873	85136873	+	Silent	SNP	T	T	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:85136873T>C	ENST00000342203.3	-	2	293	c.30A>G	c.(28-30)ccA>ccG	p.P10P	SSX2IP_ENST00000605755.1_Intron|SSX2IP_ENST00000437941.2_Intron|SSX2IP_ENST00000603677.1_Intron|SSX2IP_ENST00000370612.4_Silent_p.P10P	NM_001166293.1|NM_001166294.1|NM_014021.3	NP_001159765.1|NP_001159766.1|NP_054740.3	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting protein	10					cell adhesion	nucleus|protein complex				endometrium(5)|kidney(1)|large_intestine(4)|lung(6)|ovary(2)|urinary_tract(1)	19				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		AAGACAGACCTGGATCTGTAA	0.353000													3	77					0	0	0.184627	0	0
WIPI1	55062	broad.mit.edu	37	17	66423293	66423293	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:66423293G>A	ENST00000262139.5	-	11	1174	c.1175C>T	c.(1174-1176)tCa>tTa	p.S392L	WIPI1_ENST00000589459.1_5'UTR|RP11-120M18.2_ENST00000592030.1_RNA|WIPI1_ENST00000546360.1_Missense_Mutation_p.S310L	NM_017983.5	NP_060453.3	Q5MNZ9	WIPI1_HUMAN	WD repeat domain, phosphoinositide interacting 1	392					macroautophagy|vesicle targeting, trans-Golgi to endosome	autophagic vacuole membrane|clathrin-coated vesicle|cytosol|endosome membrane|PAS complex|pre-autophagosomal structure membrane|trans-Golgi network	androgen receptor binding|estrogen receptor binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			breast(1)|endometrium(2)|kidney(2)|large_intestine(4)|lung(6)|skin(2)|upper_aerodigestive_tract(1)	18						CGTGGAGGCTGAAGATGCACT	0.572000													6	57					0	0	0.278610	0	0
SLC22A23	63027	broad.mit.edu	37	6	3432473	3432473	+	Translation_Start_Site	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:3432473C>A	ENST00000490273.1	-	0	265				SLC22A23_ENST00000380302.4_Intron|SLC22A23_ENST00000436008.2_Intron|SLC22A23_ENST00000380298.2_Intron|SLC22A23_ENST00000406686.3_Intron	NM_021945.5	NP_068764.3	A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23						ion transport	integral to membrane	transmembrane transporter activity			endometrium(3)|kidney(1)|large_intestine(2)|lung(6)|ovary(1)|prostate(1)	14	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				CACTGAGAGCCTGCGGCAGGA	0.572000													5	5					0.0215528	0.024646	0.217242	1	0
PCDHA11	56138	broad.mit.edu	37	5	140249780	140249780	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:140249780C>T	ENST00000398640.2	+	1	1092	c.1092C>T	c.(1090-1092)ccC>ccT	p.P364P	PCDHA4_ENST00000512229.2_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA5_ENST00000529859.1_Intron|PCDHA8_ENST00000531613.1_Intron|PCDHA7_ENST00000525929.1_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA6_ENST00000527624.1_Intron|PCDHA10_ENST00000506939.2_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA5_ENST00000529619.1_Intron|PCDHA10_ENST00000307360.5_Intron|PCDHA2_ENST00000526136.1_Intron|PCDHA9_ENST00000532602.1_Intron|PCDHA6_ENST00000529310.1_Intron|PCDHA4_ENST00000530339.1_Intron	NM_018902.3	NP_061725.1														breast(1)|lung(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCTCAGCCCAGCACGGTCA	0.577000													25	45					0	0	0.681144	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814178	106814178	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:106814178C>T	ENST00000407775.2	+	8	2118	c.1868C>T	c.(1867-1869)aCa>aTa	p.T623I	RP11-152P17.2_ENST00000509144.2_RNA|ZFPM2_ENST00000378472.4_Missense_Mutation_p.T354I|ZFPM2_ENST00000517361.1_Missense_Mutation_p.T491I|RP11-152P17.2_ENST00000520594.1_RNA|RP11-152P17.2_ENST00000518932.1_RNA|ZFPM2_ENST00000520492.1_Missense_Mutation_p.T491I|RP11-152P17.2_ENST00000520433.1_RNA|RP11-152P17.2_ENST00000521622.1_RNA|ZFPM2_ENST00000522296.1_3'UTR|RP11-152P17.2_ENST00000524045.2_RNA	NM_012082.3	NP_036214.2	Q8WW38	FOG2_HUMAN	zinc finger protein, FOG family member 2	623					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			NS(4)|breast(6)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(11)|liver(2)|lung(48)|ovary(4)|prostate(5)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	99			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTTCTTCAAACATCTTGCATC	0.458000													52	98					0	0	0.870114	0	0
TYMS	7298	broad.mit.edu	37	18	670782	670782	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:670782C>A	ENST00000323274.10	+	5	786	c.647C>A	c.(646-648)tCg>tAg	p.S216*	TYMS_ENST00000323224.7_Nonsense_Mutation_p.S182*|TYMS_ENST00000581920.1_3'UTR|TYMS_ENST00000323250.5_Nonsense_Mutation_p.S133*	NM_001071.2	NP_001062.1	P04818	TYSY_HUMAN	thymidylate synthetase	216					DNA repair|DNA replication|phosphatidylinositol-mediated signaling|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|regulation of transcription involved in G1/S phase of mitotic cell cycle|response to organophosphorus	cytosol	thymidylate synthase activity			endometrium(1)|large_intestine(3)|lung(2)|urinary_tract(2)	8					Capecitabine(DB01101)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Gemcitabine(DB00441)|Leucovorin(DB00650)|Pemetrexed(DB00642)|Raltitrexed(DB00293)|Trifluridine(DB00432)	TACCAGAGATCGGGAGACATG	0.592000													5	340					0.217242	0.241706	0.217242	1	0
C9orf41	138199	broad.mit.edu	37	9	77598775	77598775	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:77598775C>A	ENST00000376834.3	-	8	1290	c.1138G>T	c.(1138-1140)Gaa>Taa	p.E380*	RP11-197P3.4_ENST00000455609.1_RNA	NM_152420.1	NP_689633.1	Q8N4J0	CI041_HUMAN	chromosome 9 open reading frame 41	380										endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|skin(1)|urinary_tract(2)	17						AATACAGATTCTTTTTCCACC	0.373000													4	39					0.000602214	0.000704962	0.184627	1	0
HLA-DQB1	3119	broad.mit.edu	37	6	32632627	32632627	+	Silent	SNP	C	C	T	rs1130389		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:32632627C>T	ENST00000399084.1	-	3	505	c.327G>A	c.(325-327)acG>acA	p.T109T	HLA-DQB1_ENST00000434651.2_Silent_p.T109T|HLA-DQB1_ENST00000374943.4_Silent_p.T109T|HLA-DQB1_ENST00000399079.3_Silent_p.T109T|HLA-DQB1_ENST00000399082.3_Intron			P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ beta 1	109	Beta-1.		T -> R (in allele DQB1*02:01, allele DQB1*02:02, allele DQB1*02:03, allele DQB1*02:04, allele DQB1*05:01, allele DQB1*05:02, allele DQB1*05:03, allele DQB1*05:04, allele DQB1*05:05 and allele DQB1*06:06; dbSNP:rs1130392).		antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			breast(1)|large_intestine(1)|lung(1)|pancreas(1)	4					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTCTGCACACCGTGTCCAACT	0.682000									T-cell Lymphoma, (Cutaneous) , Familial Clustering of;Sjgren syndrome;Melanoma, Familial Clustering of;ACTH-independent macronodular adrenal hyperplasia				4	64					0	0	0.217242	0	0
MYH3	4621	broad.mit.edu	37	17	10542452	10542452	+	Nonsense_Mutation	SNP	T	T	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:10542452T>A	ENST00000583535.1	-	25	3244	c.3157A>T	c.(3157-3159)Aaa>Taa	p.K1053*	MYH3_ENST00000226209.7_Nonsense_Mutation_p.K1053*	NM_002470.3	NP_002461.2	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle, embryonic	1053					muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(5)|large_intestine(18)|lung(30)|ovary(4)|pancreas(1)|prostate(4)|skin(2)|upper_aerodigestive_tract(5)|urinary_tract(1)	83						AATTTCCTTTTGTTCCTTTCC	0.443000													27	59					0	0	0.729181	0	0
ZNF567	163081	broad.mit.edu	37	19	37210537	37210537	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:37210537C>T	ENST00000585696.1	+	3	2048	c.818C>T	c.(817-819)aCa>aTa	p.T273I	ZNF567_ENST00000588311.1_Missense_Mutation_p.T273I|ZNF850_ENST00000589390.1_Intron|ZNF567_ENST00000536254.2_Missense_Mutation_p.T304I|ZNF567_ENST00000360729.4_Missense_Mutation_p.T273I|ZNF567_ENST00000392163.2_Missense_Mutation_p.T273I			Q8N184	ZN567_HUMAN	zinc finger protein 567	304					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(6)|lung(8)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	24	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AGAACTCACACAGGAGAGAAA	0.418000													18	38					0	0	0.539581	0	0
UBA2	10054	broad.mit.edu	37	19	34925867	34925867	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:34925867C>G	ENST00000439527.2	+	5	663	c.165C>G	c.(163-165)atC>atG	p.I55M	UBA2_ENST00000246548.4_Missense_Mutation_p.I151M			Q9UBT2	SAE2_HUMAN	ubiquitin-like modifier activating enzyme 2	151					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			breast(2)|endometrium(5)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|upper_aerodigestive_tract(1)	20	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			TAACTACTATCAAAAAGGTAA	0.348000													3	6					0	0	0.115264	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140802115	140802115	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:140802115C>A	ENST00000398587.2	+	1	1354	c.1321C>A	c.(1321-1323)Ctg>Atg	p.L441M	PCDHGA6_ENST00000517434.1_Intron|PCDHGB7_ENST00000398594.2_Intron|PCDHGB2_ENST00000522605.1_Intron|PCDHGA1_ENST00000517417.1_Intron|PCDHGA8_ENST00000398604.2_Intron|PCDHGA10_ENST00000398610.2_Intron|PCDHGB3_ENST00000576222.1_Intron|PCDHGA2_ENST00000394576.2_Intron|PCDHGA4_ENST00000571252.1_Intron|PCDHGB1_ENST00000523390.1_Intron|PCDHGA3_ENST00000253812.6_Intron|PCDHGA9_ENST00000573521.1_Intron|PCDHGB4_ENST00000519479.1_Intron|PCDHGB6_ENST00000520790.1_Intron|PCDHGA7_ENST00000518325.1_Intron|PCDHGA11_ENST00000518882.1_Missense_Mutation_p.L441M|PCDHGA5_ENST00000518069.1_Intron	NM_018914.2|NM_032092.1	NP_061737.1|NP_114481.1														breast(3)|endometrium(8)|kidney(3)|large_intestine(9)|lung(22)|ovary(2)|pancreas(1)|upper_aerodigestive_tract(1)	49			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCATGTCTGGCTGAATGTGGC	0.522000													4	117					0.150653	0.169143	0.150653	1	0
TMSB10	9168	broad.mit.edu	37	2	85133174	85133174	+	Silent	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:85133174C>G	ENST00000233143.4	+	2	142	c.33C>G	c.(31-33)gcC>gcG	p.A11A		NM_021103.3	NP_066926.1	P63313	TYB10_HUMAN	thymosin beta 10	11					actin cytoskeleton organization|sequestering of actin monomers	cytoplasm|cytoskeleton	actin binding			endometrium(1)	1						GGGAAATCGCCAGCTTCGATA	0.582000													13	35					0	0	0.435327	0	0
MEIS3	56917	broad.mit.edu	37	19	47910197	47910197	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:47910197C>T	ENST00000331559.5	-	11	1554	c.1113G>A	c.(1111-1113)caG>caA	p.Q371Q	MEIS3_ENST00000561293.1_Silent_p.Q388Q|MEIS3_ENST00000441740.2_Silent_p.Q325Q|MEIS3_ENST00000558555.1_Silent_p.Q342Q|MEIS3_ENST00000561096.1_Silent_p.Q430Q|MEIS3_ENST00000560253.1_5'UTR|MEIS3_ENST00000559524.1_Silent_p.Q388Q	NM_020160.2	NP_064545.1	Q99687	MEIS3_HUMAN	Meis homeobox 3	342						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|large_intestine(5)|lung(11)|prostate(1)|skin(2)	20		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000198)|OV - Ovarian serous cystadenocarcinoma(262;0.000439)|Epithelial(262;0.0113)|GBM - Glioblastoma multiforme(486;0.0223)		CCCCGATGGGCTGGCCCTCTG	0.706000													6	5					0	0	0.248553	0	0
ZNF407	55628	broad.mit.edu	37	18	72343705	72343705	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:72343705T>G	ENST00000299687.5	+	1	730	c.730T>G	c.(730-732)Ttt>Gtt	p.F244V	ZNF407_ENST00000582337.1_Missense_Mutation_p.F244V|ZNF407_ENST00000577538.1_Missense_Mutation_p.F244V|ZNF407_ENST00000309902.6_Missense_Mutation_p.F244V	NM_017757.2	NP_060227.2	Q9C0G0	ZN407_HUMAN	zinc finger protein 407	244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|endometrium(6)|kidney(7)|large_intestine(21)|lung(23)|ovary(4)|prostate(3)|upper_aerodigestive_tract(2)	67		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		ACAGAAGGTCTTTTCCTGTGA	0.458000													56	59					0	0	0.870114	0	0
OR1S1	219959	broad.mit.edu	37	11	57983165	57983165	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:57983165C>T	ENST00000309433.6	+	1	949	c.949C>T	c.(949-951)Ctc>Ttc	p.L317F		NM_001004458.1	NP_001004458.1	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S, member 1	317					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|endometrium(24)|kidney(1)|large_intestine(1)|liver(1)|lung(10)|prostate(1)|skin(2)|stomach(3)|urinary_tract(3)	48		Breast(21;0.0589)				CCTGAGAAAGCTCATCAATAG	0.423000													43	80					0	0	0.870114	0	0
RCSD1	92241	broad.mit.edu	37	1	167666482	167666482	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:167666482G>T	ENST00000367854.3	+	6	952	c.621G>T	c.(619-621)ttG>ttT	p.L207F	RCSD1_ENST00000537350.1_Missense_Mutation_p.L177F	NM_052862.3	NP_443094.3	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	207										NS(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(6)|lung(2)|ovary(2)|prostate(2)|skin(2)|urinary_tract(1)	24	all_hematologic(923;0.215)					ATGAAGTGTTGCCATCCAAGA	0.567000													64	190					5.52965e-18	7.04032e-18	0.870114	1	0
HDAC9	9734	broad.mit.edu	37	7	18705897	18705897	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:18705897A>G	ENST00000406451.3	+	12	1670	c.1520A>G	c.(1519-1521)gAa>gGa	p.E507G	HDAC9_ENST00000401921.1_Missense_Mutation_p.E466G|HDAC9_ENST00000417496.2_Missense_Mutation_p.E505G|HDAC9_ENST00000428307.2_Missense_Mutation_p.E463G|HDAC9_ENST00000441542.2_Missense_Mutation_p.E510G|HDAC9_ENST00000406072.1_Missense_Mutation_p.E494G|HDAC9_ENST00000432645.2_Missense_Mutation_p.E507G|HDAC9_ENST00000405010.3_Missense_Mutation_p.E507G|HDAC9_ENST00000456174.2_Missense_Mutation_p.E479G|HDAC9_ENST00000524023.1_Missense_Mutation_p.E430G	NM_178423.1|NM_178425.2	NP_848510.1|NP_848512.1	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9	507					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			breast(3)|central_nervous_system(4)|cervix(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(18)|liver(2)|lung(37)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	82	all_lung(11;0.187)				Valproic Acid(DB00313)	GAAGCAGAGGAAGAGCTTCAG	0.517000											OREG0017877	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	116	182					0	0	0.870114	0	0
ASH1L	55870	broad.mit.edu	37	1	155451020	155451020	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:155451020G>C	ENST00000368346.3	-	3	2280	c.1641C>G	c.(1639-1641)ttC>ttG	p.F547L	ASH1L_ENST00000392403.3_Missense_Mutation_p.F547L			Q9NR48	ASH1L_HUMAN	ash1 (absent, small, or homeotic)-like (Drosophila)	547					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			autonomic_ganglia(1)|breast(4)|central_nervous_system(1)|endometrium(12)|kidney(13)|large_intestine(28)|lung(39)|ovary(2)|pancreas(1)|prostate(6)|skin(11)|upper_aerodigestive_tract(2)|urinary_tract(4)	124	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CTACTGCACTGAATGGGGATT	0.448000													12	129					0	0	0.411799	0	0
PPP6R2	9701	broad.mit.edu	37	22	50879301	50879301	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:50879301C>A	ENST00000359139.3	+	21	2741	c.2347C>A	c.(2347-2349)Ccc>Acc	p.P783T	PPP6R2_ENST00000395741.3_Missense_Mutation_p.P783T|PPP6R2_ENST00000395744.3_Missense_Mutation_p.P782T|PPP6R2_ENST00000216061.5_Missense_Mutation_p.P816T	NM_001242898.1|NM_001242899.1|NM_001242900.1|NM_014678.4	NP_001229827.1|NP_001229828.1|NP_001229829.1|NP_055493.2	O75170	PP6R2_HUMAN	protein phosphatase 6, regulatory subunit 2	816						cytoplasm|intracellular membrane-bounded organelle	protein binding			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(2)|liver(1)|lung(6)|ovary(2)|skin(1)|urinary_tract(1)	22						CAGGAAGGCCCCCCTGCTGGC	0.652000													4	70					0.00909568	0.0104495	0.150653	1	0
FAM47B	170062	broad.mit.edu	37	X	34961804	34961804	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:34961804G>T	ENST00000329357.5	+	1	892	c.856G>T	c.(856-858)Gag>Tag	p.E286*		NM_152631.2	NP_689844.2	Q8NA70	FA47B_HUMAN	family with sequence similarity 47, member B	286	Pro-rich.									breast(3)|central_nervous_system(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(13)|lung(28)|ovary(4)|prostate(3)|skin(2)|upper_aerodigestive_tract(3)	71						TCTCTGCCCGGAGCCTCCCGA	0.617000													87	208					1.7318e-42	2.31219e-42	0.870114	1	0
MTOR	2475	broad.mit.edu	37	1	11288885	11288885	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:11288885C>T	ENST00000361445.4	-	19	2946	c.2870G>A	c.(2869-2871)cGg>cAg	p.R957Q		NM_004958.3	NP_004949.1	P42345	MTOR_HUMAN	mechanistic target of rapamycin (serine/threonine kinase)	957					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			breast(5)|central_nervous_system(7)|endometrium(20)|kidney(34)|large_intestine(21)|lung(43)|ovary(9)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	149						TCGGAAGATCCGCATCAGGGC	0.507000													53	97					0	0	0.870114	0	0
TRIM33	51592	broad.mit.edu	37	1	114967296	114967296	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:114967296C>T	ENST00000358465.2	-	10	1860	c.1777G>A	c.(1777-1779)Gct>Act	p.A593T	TRIM33_ENST00000369543.2_Missense_Mutation_p.A593T|TRIM33_ENST00000450349.2_Missense_Mutation_p.A201T	NM_015906.3	NP_056990.3	Q9UPN9	TRI33_HUMAN	tripartite motif containing 33	593					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			breast(2)|central_nervous_system(5)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(10)|lung(14)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	48	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCATTCTGAGCCAGTCTCATC	0.473000			T	RET	papillary thyroid								4	107					0	0	0.150653	0	0
BZW2	28969	broad.mit.edu	37	7	16734617	16734617	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:16734617C>T	ENST00000433922.2	+	8	988	c.810C>T	c.(808-810)tgC>tgT	p.C270C	BZW2_ENST00000452975.2_3'UTR|BZW2_ENST00000407633.1_Silent_p.C76C|BZW2_ENST00000405202.1_Silent_p.C194C|BZW2_ENST00000258761.3_Silent_p.C270C	NM_001159767.1	NP_001153239.1	Q9Y6E2	BZW2_HUMAN	basic leucine zipper and W2 domains 2	270	W2.				cell differentiation|nervous system development|RNA metabolic process		protein binding			cervix(1)|endometrium(1)|kidney(4)|large_intestine(3)|lung(2)|ovary(2)|skin(1)|urinary_tract(1)	15	Lung NSC(10;0.0367)|all_lung(11;0.0837)			UCEC - Uterine corpus endometrioid carcinoma (126;0.199)		CTCAGGAATGCCCGATCAAGG	0.532000													3	49					0	0	0.150653	0	0
FANCL	55120	broad.mit.edu	37	2	58387257	58387257	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:58387257G>C	ENST00000402135.3	-	13	1129	c.1093C>G	c.(1093-1095)Cca>Gca	p.P365A	FANCL_ENST00000403676.1_Missense_Mutation_p.P243A|FANCL_ENST00000403295.3_Missense_Mutation_p.P332A|FANCL_ENST00000233741.4_Missense_Mutation_p.P360A	NM_001114636.1	NP_001108108.1	Q9NW38	FANCL_HUMAN	Fanconi anemia, complementation group L	360					DNA repair	cytoplasm|nucleoplasm	ubiquitin-protein ligase activity|zinc ion binding			endometrium(1)|large_intestine(1)|lung(4)|ovary(2)	8						CTACAATATGGACATTCACCA	0.328000								Involved in tolerance or repair of DNA crosslinks	Fanconi Anemia				15	46					0	0	0.500413	0	0
CRISP2	7180	broad.mit.edu	37	6	49667525	49667525	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:49667525C>T	ENST00000339139.4	-	6	499	c.263G>A	c.(262-264)cGc>cAc	p.R88H		NM_001142407.2|NM_001142408.2|NM_001142417.2|NM_001142435.2|NM_001261822.1|NM_003296.3	NP_001135879.1|NP_001135880.1|NP_001135889.1|NP_001135907.1|NP_001248751.1|NP_003287.1	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2	88						extracellular space				kidney(1)|large_intestine(2)|lung(10)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	19	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			actggttttgcggtcctctgG	0.338000													3	15					0	0	0.184627	0	0
TTC24	164118	broad.mit.edu	37	1	156554994	156554994	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:156554994C>T	ENST00000368236.3	+	8	1463	c.1427C>T	c.(1426-1428)cCg>cTg	p.P476L	TTC24_ENST00000495690.1_3'UTR|TTC24_ENST00000368237.3_Missense_Mutation_p.P476L	NM_001105669.2	NP_001099139.2	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	476							binding			breast(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(10)|pancreas(1)|prostate(1)	20	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCAAACGTTCCGGTGAGGGCT	0.577000													18	83					0	0	0.608945	0	0
ITM2C	81618	broad.mit.edu	37	2	231740344	231740344	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:231740344G>C	ENST00000326427.6	+	3	397	c.271G>C	c.(271-273)Gat>Cat	p.D91H	ITM2C_ENST00000492029.1_3'UTR|ITM2C_ENST00000409704.2_Missense_Mutation_p.D29H|ITM2C_ENST00000335005.6_Missense_Mutation_p.D44H|ITM2C_ENST00000326407.6_Missense_Mutation_p.D91H	NM_030926.4	NP_112188.1	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C	91					negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding			cervix(2)|lung(1)|ovary(1)|skin(1)	5		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		GCTGGCCCGAGATAACTTCTT	0.572000													30	54					0	0	0.779181	0	0
OR2L3	391192	broad.mit.edu	37	1	248224035	248224035	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:248224035C>A	ENST00000359959.3	+	1	52	c.52C>A	c.(52-54)Cca>Aca	p.P18T	OR2L13_ENST00000366478.2_Intron	NM_001004687.1	NP_001004687.1	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L, member 3	18					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			cervix(1)|endometrium(2)|large_intestine(7)|lung(28)|prostate(1)|skin(1)|urinary_tract(1)	41	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			AGGATTCTTCCCACCATCAAG	0.388000													101	354					9.40513e-36	1.24896e-35	0.870114	1	0
LRRC37A4P	55073	broad.mit.edu	37	17	43587576	43587576	+	RNA	SNP	A	A	G	rs145439557	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:43587576A>G	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							tctgaaaagaaaagaaaaaaa	0.428000													3	19					0	0	0.217242	0	0
PRRT1	80863	broad.mit.edu	37	6	32117121	32117121	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:32117121C>T	ENST00000211413.5	-	4	923	c.799G>A	c.(799-801)Gag>Aag	p.E267K	PRRT1_ENST00000375152.2_Missense_Mutation_p.E186K|PRRT1_ENST00000467780.1_5'UTR|PRRT1_ENST00000375150.2_Missense_Mutation_p.E186K	NM_030651.3	NP_085154.3	Q99946	PRRT1_HUMAN	proline-rich transmembrane protein 1	267					response to biotic stimulus	integral to membrane				breast(2)|endometrium(1)|kidney(1)|lung(2)	6						TTCCGGGCCTCGCGTGAAGCG	0.657000													3	53					0	0	0.150653	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735807	55735807	+	Missense_Mutation	SNP	C	C	A	rs139897319	byFrequency	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:55735807C>A	ENST00000312345.2	-	1	183	c.133G>T	c.(133-135)Gct>Tct	p.A45S		NM_001005491.1	NP_001005491.1	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG, member 1	45					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(24)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)	40	Esophageal squamous(21;0.0137)					GTCTGGAGAGCGGGGTGAATT	0.348000													24	43					1.64293e-13	2.05992e-13	0.654019	1	0
GPR123	84435	broad.mit.edu	37	10	134896057	134896057	+	Silent	SNP	C	C	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:134896057C>T	ENST00000607359.1	+	6	1143	c.1143C>T	c.(1141-1143)gcC>gcT	p.A381A				Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	0						integral to membrane|plasma membrane	G-protein coupled receptor activity			endometrium(2)|kidney(2)|large_intestine(1)|lung(6)|prostate(3)	14		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CTCCACAAGCCTTCAGCAAAA	0.567000													2	5					0	0	0.115264	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174200395	174200395	+	Silent	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:174200395A>G	ENST00000251507.4	+	4	618	c.444A>G	c.(442-444)gaA>gaG	p.E148E	RABGAP1L_ENST00000357444.6_Silent_p.E111E|RABGAP1L_ENST00000367689.3_5'UTR	NM_014857.4	NP_055672.3	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like	148	PID.				regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			NS(1)|breast(2)|endometrium(4)|kidney(5)|large_intestine(7)|lung(21)|ovary(2)|prostate(1)|skin(2)	45						CACGTAATGAAGTAGAGGCTT	0.428000													119	301					0	0	0.870114	0	0
LINC00869	57234	broad.mit.edu	37	1	149285898	149285898	+	RNA	SNP	G	G	C	rs140070396	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:149285898G>C	ENST00000424684.1	+	0	254					NR_046136.1|NR_046138.1|NR_046139.1																						TATGCCTCACGGTTTAGCAGA	0.453000													3	22					0	0	0.150653	0	0
PIEZO2	63895	broad.mit.edu	37	18	10689731	10689731	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:10689731C>G	ENST00000302079.6	-	45	7079	c.7080G>C	c.(7078-7080)ttG>ttC	p.L2360F	PIEZO2_ENST00000503781.3_Missense_Mutation_p.L2360F|PIEZO2_ENST00000285141.4_Missense_Mutation_p.L215F|PIEZO2_ENST00000538948.1_Missense_Mutation_p.L317F|PIEZO2_ENST00000580640.1_Missense_Mutation_p.L2385F			Q9H5I5	PIEZ2_HUMAN	piezo-type mechanosensitive ion channel component 2	2360						integral to membrane	ion channel activity										TGGACAGGCTCAAAGTTGTGT	0.537000													3	122					0	0	0.115264	0	0
LRP6	4040	broad.mit.edu	37	12	12339962	12339962	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:12339962T>C	ENST00000261349.4	-	4	815	c.739A>G	c.(739-741)Att>Gtt	p.I247V	LRP6_ENST00000543091.1_Missense_Mutation_p.I247V	NM_002336.2	NP_002327.2	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein 6	247	Beta-propeller 1.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(19)|lung(28)|ovary(3)|prostate(2)|skin(7)|upper_aerodigestive_tract(5)|urinary_tract(1)	85		Prostate(47;0.0865)				CAAGCCAAAATGGAGTGTGTG	0.468000													8	96					0	0	0.278610	0	0
COPB2	9276	broad.mit.edu	37	3	139102206	139102206	+	Silent	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:139102206A>G	ENST00000333188.5	-	2	256	c.75T>C	c.(73-75)ccT>ccC	p.P25P	COPB2_ENST00000510491.1_5'UTR|COPB2_ENST00000507777.1_5'UTR	NM_004766.2	NP_004757.1	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta prime)	25					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(4)|ovary(2)|prostate(1)|skin(1)|urinary_tract(1)	24						ATGGCTCTGTAGGATGCAGAT	0.358000													3	59					0	0	0.115264	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811550	5811550	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:5811550C>A	ENST00000381095.3	-	6	2386	c.1759G>T	c.(1759-1761)Gtg>Ttg	p.V587L	NLGN4X_ENST00000381092.1_Missense_Mutation_p.V587L|NLGN4X_ENST00000275857.6_Missense_Mutation_p.V587L|NLGN4X_ENST00000538097.1_Missense_Mutation_p.V587L|NLGN4X_ENST00000381093.2_Missense_Mutation_p.V607L	NM_181332.1	NP_851849.1	Q8N0W4	NLGNX_HUMAN	neuroligin 4, X-linked	587					brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			breast(1)|cervix(2)|endometrium(4)|large_intestine(21)|lung(39)|ovary(4)|prostate(2)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)	81						CAGAAAGCCACTTTCGTTGCC	0.458000													105	238					6.71872e-74	9.06843e-74	0.870114	1	0
CYP2C19	1557	broad.mit.edu	37	10	96602692	96602692	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:96602692G>A	ENST00000371321.3	+	7	1142	c.1060G>A	c.(1060-1062)Gag>Aag	p.E354K	CYP2C19_ENST00000464755.1_3'UTR	NM_000769.1	NP_000760.1	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C, polypeptide 19	354					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			central_nervous_system(2)|endometrium(1)|kidney(2)|large_intestine(5)|lung(17)|ovary(4)|prostate(1)|skin(5)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	43		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TGTGGTGCACGAGGTCCAGAG	0.532000													6	88					0	0	0.278610	0	0
WNT9B	7484	broad.mit.edu	37	17	44950115	44950115	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:44950115G>A	ENST00000393461.2	+	2	363	c.310G>A	c.(310-312)Ggc>Agc	p.G104S	WNT9B_ENST00000290015.2_Missense_Mutation_p.G104S			O14905	WNT9B_HUMAN	wingless-type MMTV integration site family, member 9B	104					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			large_intestine(2)|lung(8)	10			BRCA - Breast invasive adenocarcinoma(9;0.0257)			TAGCCTGGAGGGCAGGATGGG	0.672000													10	27					0	0	0.361761	0	0
CNTN5	53942	broad.mit.edu	37	11	100170120	100170120	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:100170120C>A	ENST00000524871.1	+	20	2902	c.2612C>A	c.(2611-2613)gCt>gAt	p.A871D	CNTN5_ENST00000527185.1_Missense_Mutation_p.A871D|CNTN5_ENST00000418526.2_Missense_Mutation_p.A797D|CNTN5_ENST00000524560.1_3'UTR|CNTN5_ENST00000528682.1_Missense_Mutation_p.A871D|CNTN5_ENST00000279463.3_Missense_Mutation_p.A871D	NM_014361.3	NP_055176.1	O94779	CNTN5_HUMAN	contactin 5	871					cell adhesion	anchored to membrane|plasma membrane	protein binding			NS(2)|breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(12)|lung(38)|ovary(2)|pancreas(2)|prostate(2)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	81		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATCTGTTCAGCTGAAGGAGGT	0.323000													30	27					1.08312e-15	1.36495e-15	0.740014	1	0
LAMA2	3908	broad.mit.edu	37	6	129637259	129637259	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:129637259A>G	ENST00000421865.2	+	27	4050	c.4001A>G	c.(4000-4002)tAt>tGt	p.Y1334C		NM_000426.3|NM_001079823.1	NP_000417.2|NP_001073291.1	P24043	LAMA2_HUMAN	laminin, alpha 2	1334	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			NS(2)|biliary_tract(2)|breast(10)|central_nervous_system(1)|endometrium(18)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(35)|lung(84)|ovary(10)|prostate(4)|skin(9)|stomach(1)|upper_aerodigestive_tract(7)|urinary_tract(2)	194				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GATATACTATATGATATTCAT	0.333000													9	70					0	0	0.335167	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171765474	171765474	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:171765474G>A	ENST00000311601.5	-	13	2805	c.2635C>T	c.(2635-2637)Cgg>Tgg	p.R879W	SH3PXD2B_ENST00000519643.1_Intron	NM_001017995.2	NP_001017995.1	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	879	SH3 4.				adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			NS(1)|breast(1)|endometrium(1)|kidney(3)|large_intestine(9)|lung(12)|ovary(3)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	36	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTCTTCTCCCGGACTTCAAAC	0.557000													5	34					0	0	0.217242	0	0
ASH1L	55870	broad.mit.edu	37	1	155451713	155451713	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:155451713G>A	ENST00000368346.3	-	3	1587	c.948C>T	c.(946-948)ttC>ttT	p.F316F	ASH1L_ENST00000548830.1_3'UTR|ASH1L_ENST00000392403.3_Silent_p.F316F			Q9NR48	ASH1L_HUMAN	ash1 (absent, small, or homeotic)-like (Drosophila)	316					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			autonomic_ganglia(1)|breast(4)|central_nervous_system(1)|endometrium(12)|kidney(13)|large_intestine(28)|lung(39)|ovary(2)|pancreas(1)|prostate(6)|skin(11)|upper_aerodigestive_tract(2)|urinary_tract(4)	124	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTTTATTAATGAATACCGCTG	0.398000													6	154					0	0	0.248553	0	0
OR52E4	390081	broad.mit.edu	37	11	5906390	5906390	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:5906390C>A	ENST00000316987.2	+	1	890	c.868C>A	c.(868-870)Cct>Act	p.P290T		NM_001005165.1	NP_001005165.1	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E, member 4	290					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			autonomic_ganglia(1)|endometrium(1)|kidney(1)|large_intestine(7)|liver(2)|lung(13)|ovary(2)|prostate(1)|skin(2)	30		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCCTTAACCCTGTCATTTA	0.358000													35	63					2.47316e-13	3.0852e-13	0.779181	1	0
PRDM14	63978	broad.mit.edu	37	8	70978723	70978723	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:70978723A>T	ENST00000276594.2	-	5	1131	c.930T>A	c.(928-930)caT>caA	p.H310Q		NM_024504.3	NP_078780.1	Q9GZV8	PRD14_HUMAN	PR domain containing 14	310	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|endometrium(4)|kidney(4)|large_intestine(3)|lung(13)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			AGTGGCTCAAATGACCATCTT	0.373000													34	57					0	0	0.788014	0	0
AKAP13	11214	broad.mit.edu	37	15	86270342	86270342	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:86270342G>C	ENST00000394518.2	+	28	6963	c.6868G>C	c.(6868-6870)Gaa>Caa	p.E2290Q	AKAP13_ENST00000361243.2_Missense_Mutation_p.E2294Q|AKAP13_ENST00000560579.1_3'UTR|AKAP13_ENST00000394510.2_Missense_Mutation_p.E535Q|RP11-158M2.2_ENST00000561417.1_RNA	NM_001270546.1|NM_007200.3	NP_001257475.1|NP_009131.2	Q12802	AKP13_HUMAN	A kinase (PRKA) anchor protein 13	2290	Interaction with ESR1.|PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity	p.E370*(1)|p.E2294*(1)		NS(1)|breast(2)|central_nervous_system(4)|endometrium(12)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(13)|liver(1)|lung(43)|ovary(1)|prostate(1)|skin(2)|urinary_tract(1)	98						GATTGTGAGAGAAGTGGCACA	0.423000													38	151					0	0	0.847076	0	0
OR2W3	343171	broad.mit.edu	37	1	248059181	248059181	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:248059181C>G	ENST00000537741.1	+	3	550	c.293C>G	c.(292-294)gCc>gGc	p.A98G	OR2W3_ENST00000360358.3_Missense_Mutation_p.A98G			Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W, member 3	98					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|kidney(2)|large_intestine(2)|lung(33)|ovary(1)|pancreas(1)|prostate(1)|skin(5)|upper_aerodigestive_tract(3)	49	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ATGGGCTGTGCCATCCAGCTC	0.567000													47	150					0	0	0.870114	0	0
HIST1H3G	8355	broad.mit.edu	37	6	26271336	26271336	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:26271336G>C	ENST00000305910.3	-	1	276	c.277C>G	c.(277-279)Ctg>Gtg	p.L93V		NM_003534.2	NP_003525.1	P68431	H31_HUMAN	histone cluster 1, H3g	93					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			breast(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(4)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	12						GCCTCCTGCAGGGCCATCACC	0.557000													78	141					0	0	0.870114	0	0
FLJ33360	401172	broad.mit.edu	37	5	6311837	6311837	+	RNA	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:6311837G>A	ENST00000507444.1	-	0	1135					NR_028351.1																						TGCAGGCTATGGACATGATTA	0.527000													2	6					0	0	0.150653	0	0
MEGF10	84466	broad.mit.edu	37	5	126738350	126738350	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:126738350G>A	ENST00000274473.6	+	9	1160	c.893G>A	c.(892-894)tGc>tAc	p.C298Y	MEGF10_ENST00000418761.2_Missense_Mutation_p.C298Y|MEGF10_ENST00000503335.2_Missense_Mutation_p.C298Y|MEGF10_ENST00000508365.1_Missense_Mutation_p.C298Y	NM_032446.2	NP_115822.1	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10	298	EGF-like 5.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				breast(2)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(10)|lung(28)|ovary(4)|prostate(2)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	68		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CAATGTCATTGCAGTCCAGGA	0.512000													31	60					0	0	0.760397	0	0
FADS2	9415	broad.mit.edu	37	11	61608169	61608169	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:61608169T>C	ENST00000278840.4	+	4	1220	c.590T>C	c.(589-591)gTc>gCc	p.V197A	FADS2_ENST00000521849.1_Missense_Mutation_p.V197A|FADS2_ENST00000522056.1_Missense_Mutation_p.V166A|FADS2_ENST00000257261.6_Missense_Mutation_p.V175A	NM_004265.2	NP_004256.1	O95864	FADS2_HUMAN	fatty acid desaturase 2	197					electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			breast(2)|kidney(2)|large_intestine(4)|liver(1)|lung(2)|ovary(2)|pancreas(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)	20					Alpha-Linolenic Acid(DB00132)	AACCACCTTGTCCACAAATTC	0.532000													48	90					0	0	0.870114	0	0
IGHV4OR15-8	28317	broad.mit.edu	37	15	22472993	22472993	+	RNA	SNP	T	T	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:22472993T>G	ENST00000557788.2	-	0	277																											GTTCTTGGACTTGTCTACTGA	0.567000													62	678					0	0	0.870114	0	0
RYR3	6263	broad.mit.edu	37	15	33878260	33878260	+	Silent	SNP	G	G	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:33878260G>A	ENST00000389232.4	+	16	1801	c.1731G>A	c.(1729-1731)gcG>gcA	p.A577A	RYR3_ENST00000415757.3_Silent_p.A577A	NM_001036.3	NP_001027.3	Q15413	RYR3_HUMAN	ryanodine receptor 3	577					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(3)|breast(9)|central_nervous_system(8)|cervix(2)|endometrium(29)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(55)|lung(148)|ovary(7)|pancreas(1)|prostate(13)|skin(4)|stomach(1)|upper_aerodigestive_tract(8)|urinary_tract(3)	311		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATCTGATAGCGGAGGGCCACA	0.448000													16	63					0	0	0.520397	0	0
TTLL10	254173	broad.mit.edu	37	1	1116222	1116223	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:1116222_1116223insG	ENST00000379290.1	+	8	910_911	c.737_738insG	c.(736-738)cggfs	p.R246fs	TTLL10_ENST00000379288.3_Frame_Shift_Ins_p.R173fs|TTLL10_ENST00000379289.1_Frame_Shift_Ins_p.R246fs			Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	246	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			haematopoietic_and_lymphoid_tissue(3)|large_intestine(1)|lung(2)|skin(1)	7	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		AGCAAGGTGCCGGGGGGGGTCC	0.723													3	5	---	---	---	---					
LOC284632	284632	broad.mit.edu	37	1	24529611	24529627	+	RNA	DEL	CCCTGCTGCCCACACAT	CCCTGCTGCCCACACAT	-	rs71029527		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:24529611_24529627delCCCTGCTGCCCACACAT	ENST00000439059.2	+	0	288					NR_027087.2																						TCCCACACACCCCTGCTGCCCACACATCCCTGCTGCC	0.604													3	5	---	---	---	---					
RP11-84A19.4	0	broad.mit.edu	37	1	32343068	32343069	+	RNA	DEL	TG	TG	-	rs67296204		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:32343068_32343069delTG	ENST00000602889.1	-	0	485																											tatgtgtatatgtgtgtgtgtg	0.441													2	4	---	---	---	---					
PPIEL	728448	broad.mit.edu	37	1	40010094	40010095	+	RNA	INS	-	-	A	rs111914393		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:40010094_40010095insA	ENST00000440190.1	-	0	455				RP11-69E11.4_ENST00000417869.1_RNA																							ctgtctcaaagaaaaaaaaaaT	0.411													2	4	---	---	---	---					
MKNK1-AS1	100507423	broad.mit.edu	37	1	47006217	47006218	+	RNA	DEL	AC	AC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:47006217_47006218delAC	ENST00000602433.1	+	0	99					NR_038403.1																						Gcatgcacgaacacacacacac	0.495													4	4	---	---	---	---					
LOC101926964	101926964	broad.mit.edu	37	1	61238213	61238213	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:61238213delT	ENST00000423403.1	-	0	249																											tttcTTTTCCttttttttttt	0.378													2	4	---	---	---	---					
RP11-550H2.2	0	broad.mit.edu	37	1	76509082	76509083	+	RNA	INS	-	-	GGGA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:76509082_76509083insGGGA	ENST00000434540.1	+	0	208																											aaaaaGGGGGGGGGAATGAAAG	0.386													3	5	---	---	---	---					
RP11-415A20.1	0	broad.mit.edu	37	1	77231836	77231837	+	RNA	DEL	CA	CA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:77231836_77231837delCA	ENST00000427806.1	-	0	278																											cacacatatgcacacacacaca	0.396													2	4	---	---	---	---					
LOC101927587	101927587	broad.mit.edu	37	1	84195665	84195666	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:84195665_84195666insG	ENST00000417975.1	-	0	280																											TGTGGCTTAAAGGGGGGGTGTC	0.416													2	4	---	---	---	---					
LOC101927587	101927587	broad.mit.edu	37	1	84271402	84271405	+	RNA	DEL	ATAC	ATAC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:84271402_84271405delATAC	ENST00000417975.1	-	0	178																											GCACTCAGCAatacatacatacat	0.275													2	4	---	---	---	---					
SPATA1	100505741	broad.mit.edu	37	1	84975449	84975450	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:84975449_84975450insA	ENST00000370638.2	+	0	128									spermatogenesis associated 1											breast(1)|central_nervous_system(2)|endometrium(2)|large_intestine(4)|prostate(1)	10				Epithelial(280;4.36e-10)|all cancers(265;7.1e-09)|BRCA - Breast invasive adenocarcinoma(282;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(397;0.00286)|KIRC - Kidney renal clear cell carcinoma(1967;0.0111)		acccatctctcaaaaaaagaaa	0.455													2	4	---	---	---	---					
LINC01057	101928079	broad.mit.edu	37	1	95199587	95199588	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:95199587_95199588insT	ENST00000452922.1	-	0	326																											CTAAGCTCTGATTTTTTTTTTT	0.450													3	3	---	---	---	---					
LOC729970	729970	broad.mit.edu	37	1	95415566	95415567	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:95415566_95415567insC	ENST00000438509.1	+	0	489				RP4-639F20.1_ENST00000452846.1_RNA	NR_033998.1																						ggataaattaaccccccagcag	0.475													2	4	---	---	---	---					
LOC101928241	101928241	broad.mit.edu	37	1	96798832	96798833	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:96798832_96798833insT	ENST00000435311.1	-	0	165																											tttccatgctgttttcataatg	0.332													2	4	---	---	---	---					
LPPR4	9890	broad.mit.edu	37	1	99771800	99771801	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:99771800_99771801insC	ENST00000370185.3	+	7	2023_2024	c.1526_1527insC	c.(1525-1527)gccfs	p.A509fs	LPPR4_ENST00000370184.1_Frame_Shift_Ins_p.A351fs|LPPR4_ENST00000457765.1_Frame_Shift_Ins_p.A451fs	NM_014839.4	NP_055654.2	Q7Z2D5	LPPR4_HUMAN		509							phosphatidate phosphatase activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(17)|lung(39)|ovary(3)|prostate(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	72		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		CCTGGCGCTGTCCCCGGATGTA	0.554													7	676	---	---	---	---					
LOC101928270	101928270	broad.mit.edu	37	1	99972212	99972212	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:99972212delA	ENST00000438829.2	-	0	23																											cccaacctccaaaaaaaaaaa	0.418													4	5	---	---	---	---					
RP11-202K23.1	0	broad.mit.edu	37	1	102701953	102701953	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:102701953delA	ENST00000447916.1	-	0	398																											AAAACCTAGTAAAAAAAAAAG	0.313													5	1	---	---	---	---					
RP11-202K23.1	0	broad.mit.edu	37	1	102717195	102717196	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:102717195_102717196insA	ENST00000447916.1	-	0	398																											gagctaaaaacaaaaaaacaag	0.376													2	4	---	---	---	---					
RP11-202K23.1	0	broad.mit.edu	37	1	102837518	102837519	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:102837518_102837519insA	ENST00000447916.1	-	0	339																											tgacatcatggaaaatcataac	0.366													2	4	---	---	---	---					
LOC440600	440600	broad.mit.edu	37	1	110850157	110850157	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:110850157delG	ENST00000449169.1	-	0	293					NR_036595.1																						GGCCTTCCTCGGACTGTCTCT	0.522													2	4	---	---	---	---					
RP4-543J13.1	0	broad.mit.edu	37	1	114765696	114765697	+	RNA	INS	-	-	TGAA	rs77396891	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:114765696_114765697insTGAA	ENST00000420156.2	-	0	73																											tgaacatttgCtgaatgaatga	0.401													7	1	---	---	---	---					
RP4-543J13.1	0	broad.mit.edu	37	1	114769283	114769283	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:114769283delA	ENST00000420156.2	-	0	73																											tTTCTGCTCTAAATACGCAGG	0.363													2	4	---	---	---	---					
LOC101929147	101929147	broad.mit.edu	37	1	119768626	119768626	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:119768626delG	ENST00000418015.1	+	0	430				RP11-418J17.1_ENST00000413531.1_RNA																							CCAAAAGGCTGGAAATCCGGG	0.532													2	4	---	---	---	---					
LINC01527	101927988	broad.mit.edu	37	1	152917117	152917120	+	RNA	DEL	GTGC	GTGC	-	rs112260225	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:152917117_152917120delGTGC	ENST00000419578.1	-	0	225																											gtgtgtgtgtgtgcgtgtgtgtgt	0.451													3	6	---	---	---	---					
SPRR1A	6698	broad.mit.edu	37	1	152957687	152957688	+	Splice_Site	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:152957687_152957688insA	ENST00000307122.2	+	2	45_46		c.e2-1			NM_001199828.1|NM_005987.3	NP_001186757.1|NP_005978.2	P35321	SPR1A_HUMAN	small proline-rich protein 1A						keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			breast(2)|endometrium(1)|large_intestine(1)|liver(2)|lung(1)	7	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCTGTCTCTAGAAAAAAACACA	0.441													9	590	---	---	---	---					
RP11-479J7.1	0	broad.mit.edu	37	1	166357795	166357795	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:166357795delA	ENST00000448643.1	-	0	176																											CCCTCCTCCCAAACTATGCTC	0.358													2	4	---	---	---	---					
RP11-479J7.1	0	broad.mit.edu	37	1	166390944	166390945	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:166390944_166390945insT	ENST00000448643.1	-	0	176																											TACAATGCACCTTTTTTTGTCT	0.421													6	7	---	---	---	---					
LINC00970	101978719	broad.mit.edu	37	1	168995988	168995989	+	RNA	INS	-	-	A	rs146170109		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:168995988_168995989insA	ENST00000366408.3	-	0	209																											tgcaaaagattaaaaaaaaaaa	0.381													3	3	---	---	---	---					
RP3-436N22.3	0	broad.mit.edu	37	1	173572398	173572398	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:173572398delT	ENST00000431459.1	+	0	528																											TTTTAACTGATTTTTTTTTTT	0.333													4	3	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177509690	177509691	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:177509690_177509691insA	ENST00000438575.1	-	0	296																											aataaaagtttaaaaaCAGTAA	0.366													2	4	---	---	---	---					
LINC01036	104169671	broad.mit.edu	37	1	187065809	187065809	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:187065809delT	ENST00000458683.1	+	0	105																											AAACAATGACTTTACTAAAAT	0.279													2	4	---	---	---	---					
LOC440704	440704	broad.mit.edu	37	1	190689742	190689743	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:190689742_190689743insT	ENST00000413356.1	+	0	144					NR_033922.1																						AACTGGAGCACTTTTttttctt	0.342													2	4	---	---	---	---					
RP11-541F9.2	0	broad.mit.edu	37	1	191926496	191926497	+	RNA	DEL	AA	AA	-	rs77455133		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:191926496_191926497delAA	ENST00000430776.1	+	0	206																											TACTTTTACGAAAAAAAAAAAA	0.327													2	4	---	---	---	---					
RP11-541F9.2	0	broad.mit.edu	37	1	191926811	191926812	+	RNA	INS	-	-	CC	rs35449270		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:191926811_191926812insCC	ENST00000430776.1	+	0	206																											AGGCCCCACTTCCCCCCCCCAC	0.391													2	4	---	---	---	---					
RP11-21J7.1	0	broad.mit.edu	37	1	193694149	193694150	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:193694149_193694150insA	ENST00000448412.1	+	0	112																											AAGATCCATTTAAAAAGTTATC	0.460													2	4	---	---	---	---					
LINC00862	554279	broad.mit.edu	37	1	200325321	200325324	+	RNA	DEL	AAAC	AAAC	-	rs138089019		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:200325321_200325324delAAAC	ENST00000367355.1	-	0	550					NR_040064.1																						CTCCAGCTGTAAACAGTCCTTCTG	0.402													8	1	---	---	---	---					
LOC101929565	101929565	broad.mit.edu	37	1	212726397	212726400	+	RNA	DEL	AAAG	AAAG	-	rs72241615		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:212726397_212726400delAAAG	ENST00000423842.1	+	0	72																											aacAGTTTCAaaagaaagaaagaa	0.480													4	4	---	---	---	---					
RP11-323I1.1	0	broad.mit.edu	37	1	213905703	213905704	+	RNA	INS	-	-	GTGTGTGT	rs1771902	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:213905703_213905704insGTGTGTGT	ENST00000456240.1	+	0	143																											tgtgcgtgtgcgtgtgtgtgtg	0.366													5	6	---	---	---	---					
PROX1-AS1	100505832	broad.mit.edu	37	1	214133972	214133978	+	RNA	DEL	TTTTTTT	TTTTTTT	-	rs66925105		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:214133972_214133978delTTTTTTT	ENST00000433082.2	-	0	195				PROX1-AS1_ENST00000601744.1_RNA|PROX1-AS1_ENST00000601335.1_RNA|PROX1-AS1_ENST00000598105.1_RNA|PROX1-AS1_ENST00000601907.1_RNA|PROX1-AS1_ENST00000413560.1_RNA|PROX1-AS1_ENST00000601854.1_RNA																							ttcatttttcttttttttttttttttt	0.319													2	4	---	---	---	---					
RP11-400N13.1	0	broad.mit.edu	37	1	222546068	222546069	+	RNA	INS	-	-	T	rs11297974		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:222546068_222546069insT	ENST00000416510.1	-	0	167																											GTCCTGGGAAATTTTTTTTGAG	0.441													4	5	---	---	---	---					
RP4-781K5.7	0	broad.mit.edu	37	1	234853661	234853661	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:234853661delA	ENST00000422414.1	+	0	463																											AACAAACCATAAGGAAATCCT	0.433													2	4	---	---	---	---					
RP11-278H7.4	0	broad.mit.edu	37	1	244235283	244235283	+	RNA	DEL	T	T	-	rs11367340		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr1:244235283delT	ENST00000441338.1	-	0	360																											ACTCCAAttcttttttttttt	0.483													3	3	---	---	---	---					
AC092159.2	0	broad.mit.edu	37	2	678423	678424	+	RNA	INS	-	-	C	rs35683073	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:678423_678424insC	ENST00000445418.1	+	0	288																											TGGCTTTCCTGGtttttttttt	0.480													4	3	---	---	---	---					
AC144450.1	0	broad.mit.edu	37	2	1614945	1614946	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:1614945_1614946insG	ENST00000438247.1	-	0	515																											ATGAGAAGGGTCCCCAGCTGCC	0.614													2	4	---	---	---	---					
LINC01250	101927554	broad.mit.edu	37	2	2948835	2948836	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:2948835_2948836insA	ENST00000457478.1	-	0	594																											cccatctctacaaaaaatacaa	0.510													2	4	---	---	---	---					
LINC00570	100874055	broad.mit.edu	37	2	11540973	11540985	+	RNA	DEL	TTTTTTTTTTTTT	TTTTTTTTTTTTT	-	rs59941968		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:11540973_11540985delTTTTTTTTTTTTT	ENST00000417473.2	+	0	277					NR_047499.1																						TTTCCTGTGGttttttttttttttttttttttt	0.465													2	4	---	---	---	---					
LINC00276	100499171	broad.mit.edu	37	2	13888967	13888968	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:13888967_13888968insA	ENST00000420828.1	+	0	238																											agagacacaacaaaaaaagaaa	0.381													2	4	---	---	---	---					
LINC00276	100499171	broad.mit.edu	37	2	14440768	14440768	+	RNA	DEL	T	T	-	rs113774366		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:14440768delT	ENST00000418420.1	-	0	251					NR_103814.1																						AAACAATTTCTTTTTTTTTTT	0.398													2	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22258056	22258056	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:22258056delG	ENST00000450551.1	-	0	200																											AAAACATTCAGGTTTCTTGTA	0.363													2	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22708272	22708273	+	RNA	INS	-	-	CA	rs148195258	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:22708272_22708273insCA	ENST00000450551.1	-	0	70																											gcacacacacgcacacacacac	0.480													2	4	---	---	---	---					
AC016768.1	0	broad.mit.edu	37	2	23305758	23305760	+	RNA	DEL	TTG	TTG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:23305758_23305760delTTG	ENST00000421581.1	-	0	91																											tctttactctttgttgttgttgt	0.315													2	4	---	---	---	---					
SRD5A2	6716	broad.mit.edu	37	2	31783174	31783175	+	RNA	INS	-	-	G	rs138457690	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:31783174_31783175insG	ENST00000405650.1	-	0	447				AL133247.2_ENST00000435713.1_RNA			P31213	S5A2_HUMAN	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)						androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity					Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	ACATAAAAATCGGGGGGAGTTT	0.406													3	3	---	---	---	---					
AC073218.1	0	broad.mit.edu	37	2	34628067	34628067	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:34628067delA	ENST00000422558.1	+	0	475																											CACTGTCACCAAAAAGGTGAG	0.413													2	4	---	---	---	---					
AC073218.1	0	broad.mit.edu	37	2	34820879	34820880	+	RNA	INS	-	-	T	rs113104525	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:34820879_34820880insT	ENST00000422558.1	+	0	475																											TGTTCTCTGTGTTTTTGGCTTG	0.376													2	4	---	---	---	---					
LOC728730	728730	broad.mit.edu	37	2	39812231	39812232	+	RNA	INS	-	-	TT	rs138422104		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:39812231_39812232insTT	ENST00000449569.1	+	0	538				AC007246.3_ENST00000451547.1_RNA|AC007246.3_ENST00000426083.1_RNA|AC007246.3_ENST00000446698.1_RNA|AC007246.3_ENST00000438649.1_RNA|AC007246.3_ENST00000415640.1_RNA|AC007246.3_ENST00000425775.1_RNA	NR_037875.1																						GCTGTCCATCAttttttttttt	0.460													5	3	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59787805	59787806	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:59787805_59787806insA	ENST00000606382.1	-	0	236																											gactccgtctcaaaaaaaGAGG	0.480													2	4	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	60070110	60070110	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:60070110delC	ENST00000606382.1	-	0	110																											TACAGCTTTTCCACAATTTAG	0.373													2	4	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	60189854	60189857	+	RNA	DEL	TGTA	TGTA	-	rs10198220		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:60189854_60189857delTGTA	ENST00000606382.1	-	0	110																											tgtgtgtgtgtgtatgtgtgtgtg	0.451													2	4	---	---	---	---					
AC092155.4	0	broad.mit.edu	37	2	62840134	62840134	+	RNA	DEL	A	A	-	rs112026614		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:62840134delA	ENST00000416111.1	-	0	504				AC092155.4_ENST00000444672.1_RNA																							actccatctcaaaaaaaaaaa	0.423													4	2	---	---	---	---					
AC010987.5	0	broad.mit.edu	37	2	67823593	67823594	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:67823593_67823594insT	ENST00000419809.1	-	0	126																											agatgatttcatttttttgact	0.243													2	4	---	---	---	---					
DNAH6	1768	broad.mit.edu	37	2	84752795	84752796	+	Frame_Shift_Ins	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:84752795_84752796insA	ENST00000389394.3	+	3	469_470	c.332_333insA	c.(331-333)gaafs	p.E111fs	DNAH6_ENST00000398278.2_Frame_Shift_Ins_p.E111fs|DNAH6_ENST00000237449.6_Frame_Shift_Ins_p.E111fs|DNAH6_ENST00000468661.1_3'UTR	NM_001370.1	NP_001361.1	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy chain 6	111	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(2)|breast(9)|central_nervous_system(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(3)|lung(14)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	57						GTAAGCATAGCAAAAAAAAGTT	0.327													2	4	---	---	---	---					
LINC00152	112597	broad.mit.edu	37	2	87781972	87781973	+	RNA	INS	-	-	CA	rs61151810		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:87781972_87781973insCA	ENST00000409054.1	+	0	278					NR_015395.1																						ccacacacacccacacacacac	0.460													3	5	---	---	---	---					
LINC01102	150568	broad.mit.edu	37	2	105068302	105068303	+	RNA	DEL	CA	CA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:105068302_105068303delCA	ENST00000451400.1	+	0	1257																											catatatgtgcacacacacaca	0.361													2	4	---	---	---	---					
LINC01158	100506421	broad.mit.edu	37	2	105454091	105454091	+	RNA	DEL	A	A	-	rs143965918		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:105454091delA	ENST00000458253.1	-	0	147				AC018730.1_ENST00000454729.1_RNA|AC018730.1_ENST00000447876.1_RNA|AC018730.1_ENST00000443988.1_RNA|AC018730.1_ENST00000413121.1_RNA																							AGGCTCAATGAAAAAAAAATG	0.338													2	4	---	---	---	---					
AC009312.1	0	broad.mit.edu	37	2	118535655	118535656	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:118535655_118535656insT	ENST00000457110.1	-	0	161																											agtaattatcctttttttcctt	0.332													2	4	---	---	---	---					
GLI2	2736	broad.mit.edu	37	2	121746948	121746948	+	Frame_Shift_Del	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:121746948delC	ENST00000452319.1	+	14	3518	c.3458delC	c.(3457-3459)acfs	p.T1153fs	GLI2_ENST00000361492.4_Frame_Shift_Del_p.T1153fs|GLI2_ENST00000314490.11_Intron			P10070	GLI2_HUMAN	GLI family zinc finger 2	1153					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(3)|central_nervous_system(4)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(7)|lung(24)|ovary(8)|pancreas(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	64	Renal(3;0.0496)	Prostate(154;0.0623)				AGCTCCGGCACCGTAGACGCC	0.622													10	31	---	---	---	---					
NIFK-AS1	254128	broad.mit.edu	37	2	122460034	122460034	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:122460034delA	ENST00000419902.1	+	0	497					NR_037857.1																						actccatctcaaaaaaaaaaa	0.532													2	4	---	---	---	---					
AC068483.1	0	broad.mit.edu	37	2	129821803	129821803	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:129821803delA	ENST00000413403.1	-	0	275																											TTCCACGCTGAAAAGACTCTG	0.383													2	4	---	---	---	---					
RN7SKP141	0	broad.mit.edu	37	2	137148042	137148042	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:137148042delT	ENST00000516167.1	+	0	141																											aaggatgcccttcccagacag	0.478													2	4	---	---	---	---					
AC097721.2	0	broad.mit.edu	37	2	139219698	139219699	+	RNA	INS	-	-	T	rs149466602		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:139219698_139219699insT	ENST00000431985.1	-	0	506																											tcttctgtttcttttttttttt	0.431													3	3	---	---	---	---					
AC062021.1	0	broad.mit.edu	37	2	140124371	140124372	+	RNA	DEL	TG	TG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:140124371_140124372delTG	ENST00000429008.1	+	0	38																											AATAtgtgcatgtgtgtgtgtg	0.406													3	3	---	---	---	---					
TEX41	401014	broad.mit.edu	37	2	145763395	145763395	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:145763395delA	ENST00000445791.1	+	0	307					NR_033870.2																						TGTGTAAAATAATCATTCACT	0.303													2	4	---	---	---	---					
SLC4A10	57282	broad.mit.edu	37	2	162430250	162430251	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:162430250_162430251insT	ENST00000605990.1	+	0	344																											tgatttcattctttttttttat	0.366													2	4	---	---	---	---					
AC092684.1	0	broad.mit.edu	37	2	164919636	164919636	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:164919636delT	ENST00000429636.1	-	0	196																											TGCCCCCCTCttttttttttg	0.498													2	4	---	---	---	---					
AC013463.2	0	broad.mit.edu	37	2	165918094	165918095	+	RNA	INS	-	-	AA	rs59612423		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:165918094_165918095insAA	ENST00000431341.1	+	0	299																											cacacacacacacacacacaca	0.450													3	4	---	---	---	---					
AC007319.1	0	broad.mit.edu	37	2	188141592	188141593	+	RNA	DEL	AA	AA	-	rs112661674		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:188141592_188141593delAA	ENST00000412276.1	+	0	189				AC007319.1_ENST00000453517.1_RNA																							gactccacccaaaaaaaaaaaa	0.287													2	4	---	---	---	---					
AC007319.1	0	broad.mit.edu	37	2	188151806	188151806	+	RNA	DEL	T	T	-	rs111291941		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:188151806delT	ENST00000412276.1	+	0	189				AC007319.1_ENST00000453517.1_RNA																							CCTGACATCATTTTCCAAACA	0.403													2	4	---	---	---	---					
AC079613.1	0	broad.mit.edu	37	2	189585899	189585900	+	RNA	DEL	AT	AT	-	rs150033178		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:189585899_189585900delAT	ENST00000431708.1	-	0	218																											ATTTTAAAACATGTGTGACTTC	0.366													3	3	---	---	---	---					
AC093388.3	0	broad.mit.edu	37	2	191431469	191431470	+	RNA	INS	-	-	A	rs145318291	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:191431469_191431470insA	ENST00000457407.1	+	0	374																											agaaagaaaagaaaaaaaaaga	0.406													3	6	---	---	---	---					
AC098617.1	0	broad.mit.edu	37	2	192797707	192797707	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:192797707delA	ENST00000428980.2	+	0	499				AC098617.1_ENST00000424116.2_RNA																							ATCGGATGAGAAAGACTGGAA	0.423													2	4	---	---	---	---					
AC019330.1	0	broad.mit.edu	37	2	199606440	199606441	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:199606440_199606441insT	ENST00000440609.1	-	0	98																											gtttgtttttgttttttttgtt	0.470													2	4	---	---	---	---					
AC007879.7	0	broad.mit.edu	37	2	208110094	208110095	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:208110094_208110095insC	ENST00000430494.1	+	0	457_458				AC007879.5_ENST00000412387.1_RNA|AC007879.5_ENST00000432413.2_RNA																							gagccacgcagccccccatctg	0.554													2	4	---	---	---	---					
AC007879.5	0	broad.mit.edu	37	2	208225912	208225912	+	RNA	DEL	T	T	-	rs57667614		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:208225912delT	ENST00000418850.1	-	0	400				AC007879.5_ENST00000412387.1_RNA																							gcctcctgggttcaagcaatt	0.478													5	2	---	---	---	---					
AC006994.2	0	broad.mit.edu	37	2	211046140	211046141	+	RNA	INS	-	-	TT	rs11380091		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:211046140_211046141insTT	ENST00000412065.1	+	0	312																											gctatctgcagttttttttttt	0.535													4	3	---	---	---	---					
LINC00607	646324	broad.mit.edu	37	2	216622257	216622257	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:216622257delA	ENST00000445174.1	-	0	211					NR_037195.1																						gctctgtctcaaaaaaaaaaa	0.403													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217622794	217622794	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:217622794delC	ENST00000447289.1	+	0	388																											TTTGAATCCACCTCATTTTCT	0.413													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217670915	217670915	+	RNA	DEL	T	T	-	rs75159337		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:217670915delT	ENST00000447289.1	+	0	510																											GTTTGAAttcttttttttttt	0.522													5	7	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217675323	217675325	+	RNA	DEL	GAG	GAG	-	rs61228041		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:217675323_217675325delGAG	ENST00000447289.1	+	0	510																											TCAGTGCCCTGAGGAGAATGCCC	0.645													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217788001	217788001	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:217788001delC	ENST00000447289.1	+	0	510				AC007563.5_ENST00000607591.1_RNA																							TCCTAGGAGTCCGAATCAATT	0.358													2	4	---	---	---	---					
AC097468.7	0	broad.mit.edu	37	2	219822977	219822978	+	RNA	DEL	AC	AC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:219822977_219822978delAC	ENST00000429343.1	-	0	45																											ATCTGCAGTGACACACACACAC	0.525													3	6	---	---	---	---					
AC114765.1	0	broad.mit.edu	37	2	220997397	220997397	+	RNA	DEL	T	T	-	rs67345438		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:220997397delT	ENST00000432993.1	+	0	306				AC114765.2_ENST00000438633.1_lincRNA																							cttttctttcttttttttttt	0.413													2	4	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221352524	221352525	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:221352524_221352525insC	ENST00000414512.1	+	0	368																											CAGTAATTGTTCCCCCCCAGAA	0.361													4	9	---	---	---	---					
BOK-AS1	100379249	broad.mit.edu	37	2	242485496	242485499	+	RNA	DEL	ACAT	ACAT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr2:242485496_242485499delACAT	ENST00000434306.1	-	0	201					NR_033346.1																						ccatatacacacatacataccaca	0.495													2	4	---	---	---	---					
LINC01266	101927215	broad.mit.edu	37	3	655755	655755	+	RNA	DEL	C	C	-	rs33945791		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:655755delC	ENST00000420823.1	+	0	176																											GTCTCCCTTACCCCCCCCTAc	0.423													3	3	---	---	---	---					
LINC01266	101927215	broad.mit.edu	37	3	702675	702676	+	RNA	DEL	CA	CA	-	rs28474741		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:702675_702676delCA	ENST00000420823.1	+	0	176																											AATGATAACTcacacacacaca	0.361													2	4	---	---	---	---					
AC133680.1	0	broad.mit.edu	37	3	24931167	24931168	+	RNA	DEL	GT	GT	-	rs141602565		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:24931167_24931168delGT	ENST00000455576.1	+	0	345																											ACCTCTTAAAgtgtgtgtgtgt	0.347													3	3	---	---	---	---					
AC018359.1	0	broad.mit.edu	37	3	34527562	34527563	+	RNA	DEL	AC	AC	-	rs112696126		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:34527562_34527563delAC	ENST00000424786.1	+	0	570																											tatcactcatacacacacacac	0.366													6	4	---	---	---	---					
AC136289.1	0	broad.mit.edu	37	3	63778181	63778181	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:63778181delC	ENST00000443346.1	-	0	622																											CAAACCTTTTCCCCCCTTTCT	0.358													2	4	---	---	---	---					
SUCLG2-AS1	101927111	broad.mit.edu	37	3	67706258	67706258	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:67706258delT	ENST00000482677.1	+	0	345																											atgccccaccttcgagggctg	0.537													2	4	---	---	---	---					
LINC00971	440970	broad.mit.edu	37	3	84843856	84843856	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:84843856delG	ENST00000484892.1	-	0	1294					NR_033860.1																						cacacagcctgggtgacagaa	0.393													2	4	---	---	---	---					
PVRL3-AS1	100506555	broad.mit.edu	37	3	110661457	110661457	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:110661457delC	ENST00000476301.1	-	0	502				PVRL3-AS1_ENST00000474769.1_RNA																							TCTTAGTTATCCAAGGTGGCA	0.343													2	4	---	---	---	---					
RP11-553L6.2	0	broad.mit.edu	37	3	113945294	113945295	+	RNA	INS	-	-	G	rs138200142	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:113945294_113945295insG	ENST00000493033.1	+	0	160				RP11-553L6.2_ENST00000481773.1_RNA																							gtggcaggtgcggggggcagtg	0.465													2	4	---	---	---	---					
ALG1L2	644974	broad.mit.edu	37	3	129802996	129802997	+	RNA	INS	-	-	G	rs111407671		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:129802996_129802997insG	ENST00000507643.1	+	0	76							C9J202	AG1L2_HUMAN							biosynthetic process		transferase activity, transferring glycosyl groups										ATGCTGGGGAAGCAGACATTGA	0.574													3	5	---	---	---	---					
RP11-501O2.3	0	broad.mit.edu	37	3	147888935	147888936	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:147888935_147888936insT	ENST00000477153.1	+	0	166																											aatttctgctgtttttctttct	0.262													2	4	---	---	---	---					
RP11-501O2.4	0	broad.mit.edu	37	3	147972032	147972032	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:147972032delA	ENST00000460324.1	-	0	317																											tcctaacctcaagtgatcggc	0.498													4	7	---	---	---	---					
RP11-501O2.5	0	broad.mit.edu	37	3	148050878	148050878	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:148050878delT	ENST00000481334.1	+	0	106																											gaagcatagatttttgccctc	0.328													2	4	---	---	---	---					
RP11-206M11.7	0	broad.mit.edu	37	3	149031138	149031139	+	RNA	DEL	CA	CA	-	rs113434799		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:149031138_149031139delCA	ENST00000489011.1	+	0	401																											ttacaatagccacacacacaca	0.337													2	4	---	---	---	---					
RP11-23D24.2	0	broad.mit.edu	37	3	153377974	153377975	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:153377974_153377975insG	ENST00000493214.2	-	0	160																											TGTCTCCCAATGGGGGAAGACA	0.381													2	4	---	---	---	---					
EHHADH-AS1	339926	broad.mit.edu	37	3	184901402	184901402	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr3:184901402delT	ENST00000417720.1	+	0	1147					NR_038990.1																						TTGCTAAGCAtttttttttat	0.413													2	4	---	---	---	---					
LINC01182	101929071	broad.mit.edu	37	4	13749089	13749090	+	RNA	INS	-	-	T	rs80205543	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:13749089_13749090insT	ENST00000510907.1	+	0	281																											AACATAGTGTGTTTTTTTTTCA	0.312													3	4	---	---	---	---					
LINC01182	101929071	broad.mit.edu	37	4	13848440	13848441	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:13848440_13848441insA	ENST00000510907.1	+	0	349																											ctttcgtctttaaaaatcttta	0.411													2	4	---	---	---	---					
LOC101929095	101929095	broad.mit.edu	37	4	15206262	15206262	+	RNA	DEL	A	A	-	rs144289803		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:15206262delA	ENST00000502344.1	-	0	154				RP11-665G4.1_ENST00000513384.1_RNA																							GTTCTATGGGAAAAAAAAAAT	0.393													3	6	---	---	---	---					
RP11-608O21.1	0	broad.mit.edu	37	4	19876393	19876394	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:19876393_19876394insT	ENST00000511431.1	+	0	408																											TGTGTAATTACTTTTAATAGTC	0.396													2	4	---	---	---	---					
ERVH-1	100616446	broad.mit.edu	37	4	23729622	23729623	+	RNA	DEL	AA	AA	-	rs111499437		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:23729622_23729623delAA	ENST00000507666.1	-	0	90				RP11-380P13.1_ENST00000514290.1_RNA																							agactccattaaaaaaaaaaaa	0.416													4	3	---	---	---	---					
RP11-123O22.1	0	broad.mit.edu	37	4	28536578	28536580	+	RNA	DEL	AAA	AAA	-	rs34971122		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:28536578_28536580delAAA	ENST00000509416.1	+	0	402																											accttgtctcaaaaaaaaaaaaa	0.453													3	4	---	---	---	---					
LOC102723778	102723778	broad.mit.edu	37	4	31196994	31196994	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:31196994delT	ENST00000515292.1	+	0	274																											AGATTTGGAGTTTTTTTTTAT	0.338													2	4	---	---	---	---					
LOC101928622	101928622	broad.mit.edu	37	4	33957396	33957397	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:33957396_33957397insG	ENST00000505018.1	-	0	307				RP11-79E3.2_ENST00000506650.1_lincRNA																							gttcaggaactggggggcaatc	0.530													2	4	---	---	---	---					
RP11-103J17.1	0	broad.mit.edu	37	4	37107266	37107267	+	RNA	INS	-	-	AA	rs151315421	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:37107266_37107267insAA	ENST00000508199.1	+	0	56																											taaagtgtaataaaaaaaaaGT	0.381													3	3	---	---	---	---					
LINC01258	101928776	broad.mit.edu	37	4	38454866	38454866	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:38454866delA	ENST00000512517.1	-	0	860																											cagtTGTtacaaatccagcca	0.358													2	4	---	---	---	---					
KLF3-AS1	79667	broad.mit.edu	37	4	38617639	38617642	+	RNA	DEL	GAGA	GAGA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:38617639_38617642delGAGA	ENST00000440181.1	-	0	1725					NR_026804.1																						gtgtgtgCATgagagagagaggag	0.544													4	6	---	---	---	---					
RP11-231C18.1	0	broad.mit.edu	37	4	55199135	55199136	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:55199135_55199136insG	ENST00000511634.1	+	0	43																											ATTGAGGGTTTGGGGGGTTTCA	0.475													3	3	---	---	---	---					
RP11-273B19.1	0	broad.mit.edu	37	4	55724718	55724718	+	RNA	DEL	G	G	-	rs56308023		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:55724718delG	ENST00000514413.1	+	0	45																											agaatcctgaGTGACATTGTT	0.368													4	3	---	---	---	---					
UBA6-AS1	550112	broad.mit.edu	37	4	68635399	68635399	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:68635399delG	ENST00000500538.2	+	0	1905				RP11-453E17.1_ENST00000502758.1_RNA																							gcaaatacttgtttgcatgtc	0.368													2	4	---	---	---	---					
LINC01088	100505875	broad.mit.edu	37	4	79936738	79936739	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:79936738_79936739insA	ENST00000509088.1	+	0	182				RP11-438E5.1_ENST00000510667.1_RNA	NR_038342.1																						ATAAACACTGGAAAAAAATTGT	0.480													2	4	---	---	---	---					
RASGEF1B	153020	broad.mit.edu	37	4	82583262	82583263	+	RNA	DEL	AA	AA	-	rs140394368		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:82583262_82583263delAA	ENST00000510780.1	-	0	390																											CCAGATAATTAAAGACTATCTA	0.376													6	4	---	---	---	---					
RASGEF1B	153020	broad.mit.edu	37	4	82604543	82604544	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:82604543_82604544insT	ENST00000510780.1	-	0	390																											gttgttgttTGttttttttgag	0.391													2	4	---	---	---	---					
RP11-10L7.1	0	broad.mit.edu	37	4	89236380	89236381	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:89236380_89236381insT	ENST00000500009.2	+	0	196																											CACAGCATTTATTTTTGAGAAA	0.267													2	4	---	---	---	---					
LOC100507053	100507053	broad.mit.edu	37	4	100168974	100168975	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:100168974_100168975insC	ENST00000500358.2	+	0	3789				RP11-696N14.1_ENST00000506160.1_RNA|RP11-696N14.1_ENST00000506454.1_RNA	NR_037884.1																						cagttgcccctccccccagctg	0.545													2	4	---	---	---	---					
LOC101929468	101929468	broad.mit.edu	37	4	105538436	105538437	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:105538436_105538437insT	ENST00000500179.1	+	0	96																											gtgaatctttcttttttttttt	0.322													3	2	---	---	---	---					
RP11-556I14.1	0	broad.mit.edu	37	4	106008615	106008616	+	RNA	DEL	CA	CA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:106008615_106008616delCA	ENST00000506386.1	+	0	319																											tgtgtgtgtgcatgtgtTTACA	0.332													3	5	---	---	---	---					
LEF1-AS1	641518	broad.mit.edu	37	4	109098440	109098441	+	RNA	INS	-	-	CTCACTGTAACCTCTGC	rs79961408		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:109098440_109098441insCTCACTGTAACCTCTGC	ENST00000507799.1	+	0	360				LEF1-AS1_ENST00000512129.1_RNA																							tgtgaactcggctcccaggttc	0.490													2	4	---	---	---	---					
RP11-269F21.3	0	broad.mit.edu	37	4	112757209	112757209	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:112757209delG	ENST00000511219.1	-	0	134				RP11-269F21.1_ENST00000506068.1_lincRNA																							tagccagcgtggtggtgctgg	0.512													2	4	---	---	---	---					
RP11-659O3.1	0	broad.mit.edu	37	4	117124740	117124741	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:117124740_117124741insA	ENST00000509983.1	-	0	199																											ACATTTTAAGCAAAAAGAGGAA	0.297													2	4	---	---	---	---					
IL21-AS1	100996941	broad.mit.edu	37	4	123579492	123579492	+	RNA	DEL	A	A	-	rs77336710		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:123579492delA	ENST00000417927.1	+	0	3128																											tcccctcaccaaaaaaaaaag	0.493													2	4	---	---	---	---					
LOC101927087	101927087	broad.mit.edu	37	4	125445385	125445386	+	RNA	INS	-	-	TCT	rs33931826	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:125445385_125445386insTCT	ENST00000563724.1	-	0	263																											ctctctctctcttttttttttc	0.490													2	4	---	---	---	---					
RP11-125O18.1	0	broad.mit.edu	37	4	128270385	128270386	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:128270385_128270386insA	ENST00000504050.1	-	0	368																											cacagaactagaaaaaaatcta	0.356													2	4	---	---	---	---					
RP11-422J15.1	0	broad.mit.edu	37	4	130740008	130740009	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:130740008_130740009insT	ENST00000513875.1	+	0	663																											aaattggctccttttttctcaa	0.347													2	4	---	---	---	---					
RP11-745L13.2	0	broad.mit.edu	37	4	132862788	132862789	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:132862788_132862789insT	ENST00000510592.1	-	0	30																											gatttttaacatttttttgtgg	0.480													2	4	---	---	---	---					
RP11-404I7.2	0	broad.mit.edu	37	4	133899602	133899602	+	RNA	DEL	T	T	-	rs77379669		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:133899602delT	ENST00000509628.1	-	0	32																											gtcatttgtattttttttgct	0.269													2	4	---	---	---	---					
RP11-775H9.2	0	broad.mit.edu	37	4	137194675	137194675	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:137194675delC	ENST00000513332.1	-	0	237																											TGTTAATGCTCCACCATCCCT	0.378													2	4	---	---	---	---					
LINC01095	100505545	broad.mit.edu	37	4	147037907	147037908	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:147037907_147037908insG	ENST00000507726.1	-	0	168																											tcaggagagctggggcctgccc	0.470													2	4	---	---	---	---					
LINC01095	100505545	broad.mit.edu	37	4	147039942	147039943	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:147039942_147039943insG	ENST00000507726.1	-	0	168																											AGATCTTGGGAGGGGGGCAGTG	0.381													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150410920	150410921	+	RNA	DEL	TG	TG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:150410920_150410921delTG	ENST00000511993.1	-	0	1878																											Aatacatatatgtgtgtgtgta	0.307													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150591893	150591894	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:150591893_150591894insT	ENST00000511993.1	-	0	997				RP11-707F2.1_ENST00000505781.1_lincRNA																							taatgttgtggtttttgtctta	0.366													2	4	---	---	---	---					
RP11-18H21.2	0	broad.mit.edu	37	4	153075805	153075806	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:153075805_153075806insA	ENST00000504799.1	-	0	86																		p.?(1)									TTGAATATAGCAAAAAAACAGG	0.431													3	4	---	---	---	---					
RP11-502M1.2	0	broad.mit.edu	37	4	161465168	161465169	+	RNA	DEL	TT	TT	-	rs144865879		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:161465168_161465169delTT	ENST00000512652.1	+	0	645																											catgagtgtcttgccccatgca	0.530													4	2	---	---	---	---					
HAND2-AS1	79804	broad.mit.edu	37	4	174485405	174485405	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:174485405delC	ENST00000512099.1	+	0	1467				HAND2-AS1_ENST00000512209.2_RNA|HAND2-AS1_ENST00000504740.1_RNA|HAND2-AS1_ENST00000515376.1_RNA|HAND2-AS1_ENST00000512943.1_RNA|HAND2-AS1_ENST00000503474.1_RNA|HAND2-AS1_ENST00000512929.1_RNA|HAND2-AS1_ENST00000505817.1_RNA|HAND2-AS1_ENST00000514431.1_RNA|HAND2-AS1_ENST00000510268.1_RNA																							GCTGTGACATCCCTTGTGCCC	0.507													2	4	---	---	---	---					
RP11-765K14.1	0	broad.mit.edu	37	4	177797552	177797552	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:177797552delC	ENST00000508790.1	+	0	152																											atgttggaggcagatcctgca	0.333													2	4	---	---	---	---					
LOC90768	90768	broad.mit.edu	37	4	182885744	182885745	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:182885744_182885745insA	ENST00000509012.1	-	0	378																											AATGTTGCTAGAAAAAAAAAAA	0.406													2	4	---	---	---	---					
RP11-242J7.1	0	broad.mit.edu	37	4	185526146	185526147	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:185526146_185526147insA	ENST00000522554.1	-	0	292																											gatagagacacaaaaaaccctt	0.426													2	4	---	---	---	---					
RP11-217E13.1	0	broad.mit.edu	37	4	187922220	187922220	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:187922220delT	ENST00000503037.1	-	0	48																											GTTCCAGACATTTTAAAGGGA	0.338													2	4	---	---	---	---					
LOC100506272	100506272	broad.mit.edu	37	4	188471694	188471695	+	RNA	INS	-	-	GTTCA	rs72490299	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:188471694_188471695insGTTCA	ENST00000515660.1	-	0	258																											tggtgatctgggttctttgatg	0.455													2	4	---	---	---	---					
LOC100506272	100506272	broad.mit.edu	37	4	188473307	188473308	+	RNA	DEL	TT	TT	-	rs71595156		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:188473307_188473308delTT	ENST00000515660.1	-	0	258																											ttctgtaaactttttttttttt	0.361													4	3	---	---	---	---					
LOC100506272	100506272	broad.mit.edu	37	4	188566108	188566108	+	RNA	DEL	A	A	-	rs34349211		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:188566108delA	ENST00000505488.1	+	0	334																											aagaaaacagaaaaaaaaaaa	0.343													3	6	---	---	---	---					
LINC01060	401164	broad.mit.edu	37	4	189409741	189409741	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:189409741delG	ENST00000510832.1	+	0	617																											ttgttacaatggactattgca	0.358													2	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190808636	190808637	+	RNA	INS	-	-	C	rs35174045		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr4:190808636_190808637insC	ENST00000511785.1	-	0	231																											gaagcaaggcactttttcacaa	0.436													2	4	---	---	---	---					
LINC01019	285577	broad.mit.edu	37	5	3512344	3512345	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:3512344_3512345insG	ENST00000505443.1	-	0	459					NR_033898.1																						AAAACGGATGTGGGGGGGAGAG	0.416											OREG0002786	type=REGULATORY REGION|Gene=CEI-IRX1|Dataset=Vista Enhancers|EvidenceSubtype=In-vivo LacZ Expression Assay	2	4	---	---	---	---					
RP11-445O3.2	0	broad.mit.edu	37	5	4615019	4615019	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:4615019delG	ENST00000507435.1	-	0	429																											attacacttagggcacacctc	0.403													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	6982893	6982894	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:6982893_6982894insT	ENST00000512838.1	+	0	69																											TTTTGTCTGAATTTTTTTTATA	0.292													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	7080169	7080170	+	RNA	DEL	TG	TG	-	rs68129911		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:7080169_7080170delTG	ENST00000512838.1	+	0	154																											TCAGAGGCTTtgtgtgtgtgtg	0.416													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	7081225	7081225	+	RNA	DEL	T	T	-	rs11354489		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:7081225delT	ENST00000512838.1	+	0	154																											ATTGTTCTCATTTTTTTTTTT	0.363													3	3	---	---	---	---					
LOC285692	285692	broad.mit.edu	37	5	9756163	9756163	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:9756163delC	ENST00000511616.1	-	0	744					NR_027112.2																						ttctacccagccccaatttaa	0.438													2	4	---	---	---	---					
RP11-549K20.1	0	broad.mit.edu	37	5	25137661	25137662	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:25137661_25137662insG	ENST00000507600.1	-	0	280																											cccagttacgcggggggctgag	0.525													2	4	---	---	---	---					
RP11-184E9.1	0	broad.mit.edu	37	5	25297237	25297240	+	RNA	DEL	CACT	CACT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:25297237_25297240delCACT	ENST00000502100.2	+	0	352				RP11-192H6.2_ENST00000505040.2_lincRNA																							gtcgaaataacactcacaagttgc	0.284													2	4	---	---	---	---					
RP11-152K4.2	0	broad.mit.edu	37	5	31104675	31104676	+	RNA	INS	-	-	AG	rs10680774	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:31104675_31104676insAG	ENST00000523584.1	-	0	267																											AACAAAAGAAAAGAGAGAGAGA	0.351													2	4	---	---	---	---					
RP11-152K4.2	0	broad.mit.edu	37	5	31109337	31109338	+	RNA	INS	-	-	T	rs7733510		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:31109337_31109338insT	ENST00000523584.1	-	0	267																											tttgttttttgttttttttttt	0.337													2	4	---	---	---	---					
RP11-152K4.2	0	broad.mit.edu	37	5	31116821	31116822	+	RNA	INS	-	-	TG	rs143060473	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:31116821_31116822insTG	ENST00000523584.1	-	0	125																											gtgtctgtgtttgtgtgtgtgt	0.307													3	4	---	---	---	---					
CTD-2066L21.3	0	broad.mit.edu	37	5	33054406	33054407	+	RNA	DEL	CT	CT	-	rs144011982		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:33054406_33054407delCT	ENST00000510327.1	-	0	346																											aagatttccactctcagcactt	0.312													4	2	---	---	---	---					
CTD-2066L21.3	0	broad.mit.edu	37	5	33112256	33112256	+	RNA	DEL	T	T	-	rs113842925		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:33112256delT	ENST00000510327.1	-	0	346																											agttttgtccttttttttttt	0.333													4	4	---	---	---	---					
CTD-2203K17.1	0	broad.mit.edu	37	5	33425348	33425349	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:33425348_33425349insT	ENST00000507251.1	-	0	415																											tgatcttattcttttttgtgac	0.386													2	4	---	---	---	---					
RP11-159F24.2	0	broad.mit.edu	37	5	43340427	43340427	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:43340427delA	ENST00000511991.1	+	0	82																											actctgtctcaaaaaaaaaaa	0.413													3	3	---	---	---	---					
LOC100506674	100506674	broad.mit.edu	37	5	44802108	44802108	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:44802108delT	ENST00000503179.1	-	0	118				RP11-53O19.1_ENST00000505302.1_RNA|RP11-53O19.1_ENST00000505637.1_RNA|RP11-53O19.1_ENST00000503452.1_RNA|RP11-53O19.1_ENST00000508123.1_RNA|RP11-53O19.1_ENST00000505401.1_RNA|RP11-53O19.1_ENST00000508945.1_RNA|RP11-53O19.1_ENST00000514597.1_RNA																							AGATCCTGAATTTGCATTTTC	0.274													2	4	---	---	---	---					
CTD-2288O8.1	0	broad.mit.edu	37	5	52029199	52029204	+	RNA	DEL	TGTGTG	TGTGTG	-	rs3078961		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:52029199_52029204delTGTGTG	ENST00000502995.1	-	0	167																											ATTCCTGAATtgtgtgtgtgtgtgtg	0.359													3	2	---	---	---	---					
CTD-2023N9.2	0	broad.mit.edu	37	5	56904394	56904397	+	RNA	DEL	AAAC	AAAC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:56904394_56904397delAAAC	ENST00000513392.1	+	0	244																											aagactaagaaaacaaacaaacaa	0.392													3	3	---	---	---	---					
CTD-2023N9.2	0	broad.mit.edu	37	5	56906926	56906926	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:56906926delA	ENST00000513392.1	+	0	244																											TCTGtctgccacatgaccatc	0.463													3	5	---	---	---	---					
RP11-305P14.1	0	broad.mit.edu	37	5	65599100	65599101	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:65599100_65599101insA	ENST00000510964.2	+	0	71																											acattgatgagaaaaaaaattg	0.426													2	4	---	---	---	---					
LOC101928858	101928858	broad.mit.edu	37	5	66766275	66766278	+	RNA	DEL	TTAT	TTAT	-	rs142022343		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:66766275_66766278delTTAT	ENST00000508512.1	-	0	63																		p.0?(1)									aattggggtgttatttatttattt	0.289													4	3	---	---	---	---					
LOC102477328	102477328	broad.mit.edu	37	5	71905796	71905797	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:71905796_71905797insA	ENST00000512573.1	-	0	103																											CACAAAAGGCTAAAAAGTCTTT	0.386													2	4	---	---	---	---					
RP11-60A8.1	0	broad.mit.edu	37	5	72561353	72561354	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:72561353_72561354insG	ENST00000513379.1	+	0	328																											TGGGCAAGGGTGGGGGGGGAGC	0.455													2	4	---	---	---	---					
RP11-168A11.1	0	broad.mit.edu	37	5	79253743	79253744	+	RNA	INS	-	-	GAAT	rs141272568	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:79253743_79253744insGAAT	ENST00000503167.1	+	0	521																											TAATATGTATCgaatgaatgaa	0.441													3	4	---	---	---	---					
TMEM161B-AS1	100505894	broad.mit.edu	37	5	87608659	87608659	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:87608659delT	ENST00000501715.2	+	0	577				TMEM161B-AS1_ENST00000501869.2_RNA|TMEM161B-AS1_ENST00000504922.1_RNA|TMEM161B-AS1_ENST00000510087.1_RNA																							cctggcgtggttttcaggtcc	0.388													2	4	---	---	---	---					
TMEM161B-AS1	100505894	broad.mit.edu	37	5	87620487	87620487	+	RNA	DEL	A	A	-	rs71613079		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:87620487delA	ENST00000501715.2	+	0	577				TMEM161B-AS1_ENST00000501869.2_RNA|TMEM161B-AS1_ENST00000504922.1_RNA|TMEM161B-AS1_ENST00000510087.1_RNA																							ctcaaaaaagaaaaaaaaaaT	0.448													8	1	---	---	---	---					
RP11-348J24.2	0	broad.mit.edu	37	5	91552069	91552070	+	RNA	INS	-	-	T	rs138981893		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:91552069_91552070insT	ENST00000502934.1	+	0	172																											TTGAGGAAGACttttttttttt	0.450													4	5	---	---	---	---					
NR2F1-AS1	441094	broad.mit.edu	37	5	92826552	92826553	+	RNA	DEL	CA	CA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:92826552_92826553delCA	ENST00000607797.1	-	0	1229				NR2F1-AS1_ENST00000510254.1_RNA|NR2F1-AS1_ENST00000606739.1_RNA|NR2F1-AS1_ENST00000607831.1_RNA|NR2F1-AS1_ENST00000606233.1_RNA	NR_015369.1																						ggtggtggtgcagtggtggtgg	0.525													2	4	---	---	---	---					
RP11-155G15.2	0	broad.mit.edu	37	5	96736455	96736456	+	RNA	DEL	AG	AG	-	rs80352041		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:96736455_96736456delAG	ENST00000504578.1	+	0	71																											ccacctaggcagatgttttatc	0.396													3	5	---	---	---	---					
CTD-2001C12.1	0	broad.mit.edu	37	5	99863071	99863071	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:99863071delA	ENST00000499025.1	-	0	99																											GGGATGGGAGAAAAAAAAAAG	0.313													2	4	---	---	---	---					
RP11-6N13.1	0	broad.mit.edu	37	5	104139823	104139824	+	RNA	INS	-	-	A	rs35832832	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:104139823_104139824insA	ENST00000503650.1	-	0	328																											gtaggagaaacaatgcagggct	0.342													5	2	---	---	---	---					
RP11-6N13.1	0	broad.mit.edu	37	5	104191574	104191575	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:104191574_104191575insT	ENST00000503650.1	-	0	328																											aacatgggttgtttttttcatt	0.337													2	4	---	---	---	---					
CTD-2374C24.1	0	broad.mit.edu	37	5	104350942	104350942	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:104350942delG	ENST00000522464.1	-	0	68				RP11-6N13.1_ENST00000503650.1_lincRNA																							atatgaactagggcttagaag	0.358													2	4	---	---	---	---					
CTD-2374C24.1	0	broad.mit.edu	37	5	104356575	104356576	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:104356575_104356576insT	ENST00000522464.1	-	0	68				RP11-6N13.1_ENST00000503650.1_lincRNA																							TTTTGACTCTCttttttttttt	0.446													2	4	---	---	---	---					
RP11-6N13.1	0	broad.mit.edu	37	5	104694260	104694260	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:104694260delA	ENST00000503650.1	-	0	210																											gaatattttcaagaataatga	0.294													2	4	---	---	---	---					
CTC-575N7.1	0	broad.mit.edu	37	5	129151392	129151392	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:129151392delA	ENST00000503616.1	-	0	121				CTC-575N7.1_ENST00000515569.1_RNA																							gcttatacgcaggaatgagca	0.408													2	4	---	---	---	---					
CTC-575N7.1	0	broad.mit.edu	37	5	129160363	129160363	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:129160363delA	ENST00000503616.1	-	0	121				CTC-575N7.1_ENST00000515569.1_RNA																							ctaccaacctaaaaaaaaagc	0.363													2	4	---	---	---	---					
LOC101926941	101926941	broad.mit.edu	37	5	141742423	141742423	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:141742423delA	ENST00000510311.1	+	0	506				AC005592.2_ENST00000514303.1_RNA																							gacaaacgggaaaacaggcac	0.512													2	4	---	---	---	---					
CTC-806A22.1	0	broad.mit.edu	37	5	144747420	144747421	+	RNA	INS	-	-	AC	rs59153598	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:144747420_144747421insAC	ENST00000504620.1	-	0	84																											acctgcaacctacatcttgatt	0.337													3	3	---	---	---	---					
LOC102546294	102546294	broad.mit.edu	37	5	147719709	147719709	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:147719709delT	ENST00000501695.3	-	0	429																											TAGATGTCTCTTGGGTTTAAG	0.393													2	4	---	---	---	---					
MIR143HG	728264	broad.mit.edu	37	5	148795700	148795701	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:148795700_148795701insG	ENST00000602964.1	+	0	200																											ccaaaaaaaaaagaGTCTAGAC	0.520													3	5	---	---	---	---					
LOC102546298	102546298	broad.mit.edu	37	5	149856998	149856999	+	RNA	DEL	GT	GT	-	rs138290510		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:149856998_149856999delGT	ENST00000519040.1	-	0	139																											GAAAAGTTCAgtgtgtgtgtgt	0.500													3	4	---	---	---	---					
LOC101927115	101927115	broad.mit.edu	37	5	151505324	151505325	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:151505324_151505325insC	ENST00000524295.1	+	0	199																											agtgtccccagcccccggcaag	0.480													2	4	---	---	---	---					
LOC101927766	101927766	broad.mit.edu	37	5	159251431	159251432	+	RNA	INS	-	-	AAAA	rs113362252	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:159251431_159251432insAAAA	ENST00000522627.1	-	0	3691																											aagaaagaaagagaaagaaagg	0.416													3	6	---	---	---	---					
LOC102546299	102546299	broad.mit.edu	37	5	164045678	164045679	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:164045678_164045679insA	ENST00000517508.1	+	0	716				CTC-340A15.2_ENST00000519570.1_RNA|CTC-340A15.2_ENST00000522303.1_RNA|CTC-340A15.2_ENST00000523704.1_RNA|CTC-340A15.2_ENST00000519750.1_RNA|CTC-340A15.2_ENST00000522646.1_RNA																							GTACTCTTGTCAAAAACAATAC	0.277													2	4	---	---	---	---					
CTC-535M15.2	0	broad.mit.edu	37	5	165095446	165095446	+	RNA	DEL	T	T	-	rs79406898		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:165095446delT	ENST00000522189.1	+	0	21																											GGAAGGGGAATTTTTTTTTTT	0.433													3	4	---	---	---	---					
LINC01187	100507267	broad.mit.edu	37	5	169622799	169622799	+	RNA	DEL	C	C	-	rs72190042		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:169622799delC	ENST00000506431.2	-	0	1538																											TTACTTCACACCCCCCCCCTT	0.403													6	2	---	---	---	---					
LINC01484	101928136	broad.mit.edu	37	5	173146288	173146289	+	RNA	DEL	GT	GT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:173146288_173146289delGT	ENST00000521128.1	-	0	406_407																											GGGTGTCCAGgtgtgtgtgtgt	0.441													2	4	---	---	---	---					
FLJ16171	441116	broad.mit.edu	37	5	174357094	174357097	+	RNA	DEL	CTTT	CTTT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:174357094_174357097delCTTT	ENST00000377300.3	-	0	1281					NR_046113.1																						tcttttcttcctttctttcttttc	0.363													4	6	---	---	---	---					
THOC3	84321	broad.mit.edu	37	5	175348042	175348044	+	RNA	DEL	ATG	ATG	-	rs139572932		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr5:175348042_175348044delATG	ENST00000502813.1	-	0	87																											agtgaggataatgagattgacct	0.438													6	2	---	---	---	---					
LY86-AS1	285780	broad.mit.edu	37	6	6404947	6404949	+	RNA	DEL	TTT	TTT	-	rs67177622		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:6404947_6404949delTTT	ENST00000435641.1	-	0	639				LY86-AS1_ENST00000429345.1_RNA|LY86-AS1_ENST00000447858.1_RNA																							tttttttttcttttttttttttt	0.394													2	4	---	---	---	---					
LY86-AS1	285780	broad.mit.edu	37	6	6552357	6552358	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:6552357_6552358insT	ENST00000435641.1	-	0	482				LY86-AS1_ENST00000429345.1_RNA|LY86-AS1_ENST00000447858.1_RNA																							TGCTTATAGTGTGTCATTTTAG	0.356													3	3	---	---	---	---					
RP1-167F1.2	0	broad.mit.edu	37	6	19598524	19598524	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:19598524delT	ENST00000432171.2	-	0	366																											ggTATGCATCtttttttttga	0.532													2	4	---	---	---	---					
RP1-209A6.1	0	broad.mit.edu	37	6	22833895	22833896	+	RNA	INS	-	-	CTG	rs140660674	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:22833895_22833896insCTG	ENST00000420572.2	-	0	197																											atgtggacagcccccgagggaa	0.490													4	4	---	---	---	---					
LOC101927136	101927136	broad.mit.edu	37	6	53440564	53440564	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:53440564delT	ENST00000502390.1	-	0	122																											GACATAGGACtttttttttta	0.443													3	4	---	---	---	---					
RP11-154D6.1	0	broad.mit.edu	37	6	72022969	72022969	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:72022969delT	ENST00000589255.1	-	0	585				RP11-154D6.1_ENST00000586030.1_RNA|RP11-154D6.1_ENST00000434683.1_RNA|RP11-154D6.1_ENST00000587015.1_RNA|RP11-154D6.1_ENST00000450998.1_RNA|RP11-154D6.1_ENST00000587036.1_RNA|RP11-154D6.1_ENST00000585882.1_RNA|RP11-154D6.1_ENST00000585945.1_RNA|RP11-154D6.1_ENST00000587253.1_RNA|RP11-154D6.1_ENST00000587397.1_RNA|RP11-154D6.1_ENST00000586232.1_RNA|RP11-154D6.1_ENST00000591156.1_RNA|RP11-154D6.1_ENST00000590780.1_RNA|RP11-154D6.1_ENST00000590213.1_RNA|RP11-154D6.1_ENST00000588612.1_RNA|RP3-331H24.5_ENST00000602823.1_lincRNA																							AAGGTATGGCTTTTCCCCTTA	0.368													2	4	---	---	---	---					
LOC101928516	101928516	broad.mit.edu	37	6	74852695	74852695	+	RNA	DEL	T	T	-	rs72125620		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:74852695delT	ENST00000435946.1	+	0	138																											GTGGGGTATCttttttttttt	0.468													4	6	---	---	---	---					
RP11-436D23.1	0	broad.mit.edu	37	6	98594973	98594973	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:98594973delA	ENST00000607823.1	+	0	352																											ccagacatagaaaaaaatgca	0.338													2	4	---	---	---	---					
RP11-436D23.1	0	broad.mit.edu	37	6	98686887	98686888	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:98686887_98686888insT	ENST00000607823.1	+	0	352																											GCAATAGATAATTTTTTTTTCT	0.312													3	5	---	---	---	---					
LINC00222	387111	broad.mit.edu	37	6	109078041	109078042	+	RNA	DEL	TT	TT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:109078041_109078042delTT	ENST00000416104.1	+	0	196																											TTAAAGCTGAtttttttttttt	0.480													2	4	---	---	---	---					
RP1-97J1.2	0	broad.mit.edu	37	6	112222104	112222104	+	RNA	DEL	C	C	-	rs113220458		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:112222104delC	ENST00000449069.1	+	0	413																											TGTGTAATCACCCCCCCAGGC	0.493													5	3	---	---	---	---					
RP1-105O18.1	0	broad.mit.edu	37	6	112799806	112799807	+	RNA	DEL	TG	TG	-	rs59372341		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:112799806_112799807delTG	ENST00000446322.1	-	0	109																											ATTAAAGCTAtgtgtgtgtgtg	0.386													4	9	---	---	---	---					
RP11-437J19.1	0	broad.mit.edu	37	6	113683717	113683717	+	RNA	DEL	C	C	-	rs34468683		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:113683717delC	ENST00000445974.1	-	0	211																											CAACCTAAGACCTTTATCTGT	0.423													3	3	---	---	---	---					
TARID	100507308	broad.mit.edu	37	6	133889645	133889646	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:133889645_133889646insA	ENST00000607033.1	-	0	623				RP3-323P13.2_ENST00000606544.1_RNA|RP3-323P13.2_ENST00000606292.1_RNA|RP3-323P13.2_ENST00000607573.1_RNA																							AAAAACAACAGTAACACGAACC	0.480													3	5	---	---	---	---					
LINC00271	100131814	broad.mit.edu	37	6	135838798	135838799	+	RNA	INS	-	-	A	rs61424995		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:135838798_135838799insA	ENST00000421378.2	+	0	147					NR_026805.1																						tctgcacagccaaaaaaaaaaa	0.327													3	3	---	---	---	---					
RP13-143G15.4	0	broad.mit.edu	37	6	136544934	136544934	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:136544934delA	ENST00000417643.1	-	0	58																											aatctctactaaaaatacaaa	0.527													2	4	---	---	---	---					
STXBP5-AS1	729178	broad.mit.edu	37	6	147405647	147405647	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:147405647delT	ENST00000367477.3	-	0	523				STXBP5-AS1_ENST00000447072.1_RNA|STXBP5-AS1_ENST00000458125.1_RNA|STXBP5-AS1_ENST00000431143.1_RNA|STXBP5-AS1_ENST00000427394.1_RNA																							CAGAtttatcttttttttttt	0.378													2	4	---	---	---	---					
LOC102724087	102724087	broad.mit.edu	37	6	161377852	161377862	+	RNA	DEL	ATGCTGGTAAG	ATGCTGGTAAG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr6:161377852_161377862delATGCTGGTAAG	ENST00000417479.1	+	0	423																											cctcacaggcatgctggtaagatgctggtag	0.441													2	4	---	---	---	---					
AC007091.1	0	broad.mit.edu	37	7	19491730	19491730	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:19491730delT	ENST00000412563.1	+	0	356																											tagggtgtcctttttctgctt	0.398													2	4	---	---	---	---					
AC007255.8	0	broad.mit.edu	37	7	29586607	29586607	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:29586607delA	ENST00000447171.1	-	0	340																											aactgaaaggaaaaaaaaaga	0.328													2	4	---	---	---	---					
AC073115.7	0	broad.mit.edu	37	7	46033583	46033584	+	RNA	DEL	TT	TT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:46033583_46033584delTT	ENST00000436056.1	+	0	173																											aaatctgctgtttttttttttt	0.356													2	4	---	---	---	---					
AC092657.2	0	broad.mit.edu	37	7	46341791	46341798	+	RNA	DEL	TTTTTTTT	TTTTTTTT	-	rs72405917		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:46341791_46341798delTTTTTTTT	ENST00000436266.1	+	0	49																											actcagttaatttttttttttttttttt	0.466													5	1	---	---	---	---					
AC004901.1	0	broad.mit.edu	37	7	46934464	46934465	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:46934464_46934465insC	ENST00000433337.1	-	0	301																											ttcagcccaggccccctccctc	0.431													2	4	---	---	---	---					
AC004901.1	0	broad.mit.edu	37	7	47087596	47087596	+	RNA	DEL	T	T	-	rs11359013		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:47087596delT	ENST00000433337.1	-	0	237				AC004870.3_ENST00000412996.1_RNA																							TCTCTCTCTCttttttttttt	0.488													3	3	---	---	---	---					
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913438		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:55242465_55242479delGGAATTAAGAGAAGC	ENST00000275493.2	+	19	2412_2426	c.2235_2249delGGAATTAAGAGAAGC	c.(2233-2250)aaa>aa	p.KELREA745del	EGFR_ENST00000455089.1_In_Frame_Del_p.KELREA700del|EGFR_ENST00000442591.1_Intron|EGFR_ENST00000454757.2_In_Frame_Del_p.KELREA692del	NM_005228.3	NP_005219.2	P00533	EGFR_HUMAN	epidermal growth factor receptor	745	Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.E746_A750del(1007)|p.L747_P753>S(123)|p.L747_A750>P(82)|p.L747_T751del(76)|p.E746_S752>V(57)|p.L747_S752del(34)|p.L747_T751>P(21)|p.E746_T751>A(21)|p.L747_E749del(16)|p.E746_E749del(9)|p.L747_T751>S(7)|p.L747_P753>Q(7)|p.K745_E749del(6)|p.E746_T751>V(6)|p.L747S(6)|p.E746_S752>A(6)|p.E746_T751>VA(6)|p.K745_E746insIPVAIK(5)|p.L747_T751>Q(5)|p.E746_T751del(4)|p.E746_T751>I(4)|p.E746_S752>D(4)|p.E746_S752>I(4)|p.K745_E746insVPVAIK(4)|p.E746_A750>IP(3)|p.L747P(3)|p.L747_S752>Q(3)|p.E746K(3)|p.E746_T751>IP(3)|p.E746_T751>VP(3)|p.E746_A750>RP(2)|p.L747_S752>QH(2)|p.E746_S752del(2)|p.A750_E758>P(2)|p.E746_P753>VS(2)|p.E746_A750>QP(2)|p.L747_K754del(2)|p.L747_K754>ST(1)|p.E746_A750>VP(1)|p.A750_K754del(1)|p.L747_P753del(1)|p.E746del(1)|p.L747_K754>N(1)|p.E746_P753>IS(1)|p.E746_T751>L(1)|p.L747_R748>FP(1)|p.E749G(1)|p.L747_T751>A(1)|p.I744_E749>LKR(1)|p.E746_P753>LS(1)|p.E746_T751>Q(1)|p.E746_T751>S(1)|p.E746_P753>VQ(1)|p.E746_A750>DP(1)|p.A750_E758del(1)|p.E746V(1)|p.I744_A750>VK(1)|p.R748I(1)|p.K745_E746insTPVAIK(1)|p.K745_A750del(1)|p.R748K(1)		NS(2)|adrenal_gland(5)|biliary_tract(8)|bone(3)|breast(18)|central_nervous_system(106)|endometrium(26)|eye(3)|haematopoietic_and_lymphoid_tissue(9)|kidney(11)|large_intestine(85)|liver(2)|lung(13575)|oesophagus(21)|ovary(38)|pancreas(3)|peritoneum(11)|pleura(2)|prostate(35)|salivary_gland(11)|skin(9)|small_intestine(1)|soft_tissue(4)|stomach(41)|thymus(2)|thyroid(14)|upper_aerodigestive_tract(59)|urinary_tract(6)	14110	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TCGCTATCAAGGAATTAAGAGAAGCAACATCTCCG	0.479	E746K(HCC827_LUNG)|E746_A750del(NCIH1650_LUNG)|E746_A750del(PC14_LUNG)|L747_P753>Q(HCC4006_LUNG)	8	"""A, O, Mis"""		"""glioma, NSCLC"""	NSCLC			Lung Cancer, Familial Clustering of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			15	53	---	---	---	---					
GS1-124K5.2	0	broad.mit.edu	37	7	65891818	65891819	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:65891818_65891819insA	ENST00000442578.1	-	0	826																											AAGCTTGCAAGAAAAAAAACAC	0.426													4	5	---	---	---	---					
GS1-124K5.11	0	broad.mit.edu	37	7	65997351	65997352	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:65997351_65997352insT	ENST00000449307.2	-	0	1308																											GGGGTCGGGCAttttttttttt	0.480													4	5	---	---	---	---					
STEAP2-AS1	100874100	broad.mit.edu	37	7	89670281	89670282	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:89670281_89670282insG	ENST00000478318.2	-	0	424																											tggacaaatttggggggagtca	0.391													2	4	---	---	---	---					
STEAP2-AS1	100874100	broad.mit.edu	37	7	89752882	89752891	+	RNA	DEL	TTTTGTTTTG	TTTTGTTTTG	-	rs5000032		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:89752882_89752891delTTTTGTTTTG	ENST00000478318.2	-	0	424				DPY19L2P4_ENST00000497063.1_RNA																							caattaaggtttttgttttgttttgttttg	0.362													4	5	---	---	---	---					
MTERF1	7978	broad.mit.edu	37	7	91459189	91459190	+	RNA	INS	-	-	T	rs149723019		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:91459189_91459190insT	ENST00000454222.1	-	0	93																											CATTTTAATGAttttttttttt	0.386													3	3	---	---	---	---					
GPC2	221914	broad.mit.edu	37	7	99769524	99769525	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:99769524_99769525insG	ENST00000292377.2	-	7	1214_1215	c.1047_1048insC	c.(1045-1050)ccacccfs	p.P350fs	GPC2_ENST00000471050.1_5'UTR	NM_152742.1	NP_689955.1	Q8N158	GPC2_HUMAN	glypican 2	350						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			NS(1)|breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(8)|pancreas(1)|skin(3)	18	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCACCGGGTCGGGGGGGCCGC	0.723													3	5	---	---	---	---					
COL26A1	136227	broad.mit.edu	37	7	101119087	101119090	+	RNA	DEL	TTCT	TTCT	-	rs112879603		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:101119087_101119090delTTCT	ENST00000313669.7	+	0	577				COL26A1_ENST00000397927.3_RNA|COL26A1_ENST00000528707.1_RNA	NM_133457.2	NP_597714.2			collagen, type XXVI, alpha 1																		ccttccttccttctttctttcttt	0.373													5	2	---	---	---	---					
RP11-325F22.5	0	broad.mit.edu	37	7	104566648	104566649	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:104566648_104566649insA	ENST00000453666.1	-	0	178																											cctgtctctacaaaaaaaaata	0.520													2	4	---	---	---	---					
LOC101928012	101928012	broad.mit.edu	37	7	112292621	112292621	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:112292621delA	ENST00000453459.1	+	0	580																											cagtaggtgcaaaaaaagcat	0.299													2	4	---	---	---	---					
LINC01510	100996266	broad.mit.edu	37	7	116241827	116241828	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:116241827_116241828insA	ENST00000458082.1	-	0	222																											CCTGTAGTAGCAATGACTGATT	0.347													2	4	---	---	---	---					
RP5-921G16.1	0	broad.mit.edu	37	7	123894089	123894089	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:123894089delT	ENST00000484322.1	+	0	168																											TGGAAACGGGTTAAGAGGAAG	0.393													2	4	---	---	---	---					
KCP	375616	broad.mit.edu	37	7	128548254	128548255	+	RNA	INS	-	-	A	rs11449361	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:128548254_128548255insA	ENST00000476647.2	-	0	263							Q6ZWJ8	KCP_HUMAN	kielin/chordin-like protein							extracellular region				central_nervous_system(1)|endometrium(3)	4						ggaaaagaaagaaaaaaaaaga	0.351													2	4	---	---	---	---					
AC024084.1	0	broad.mit.edu	37	7	135749134	135749135	+	RNA	DEL	TC	TC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:135749134_135749135delTC	ENST00000440744.2	+	0	174																											tctgtatctgtctctctctctc	0.450													2	4	---	---	---	---					
AC009784.3	0	broad.mit.edu	37	7	135778848	135778849	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:135778848_135778849insA	ENST00000445293.2	+	0	112																											AGAGTGAGAACAAAAAAAAAAT	0.347													2	4	---	---	---	---					
LOC349160	349160	broad.mit.edu	37	7	136435658	136435659	+	RNA	INS	-	-	TG	rs61068929	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:136435658_136435659insTG	ENST00000586239.1	-	0	466				AC009264.1_ENST00000593789.1_RNA|AC009264.1_ENST00000597642.1_RNA																							gtgtgtgtgtctgtgtgtgtgt	0.342													2	4	---	---	---	---					
LOC349160	349160	broad.mit.edu	37	7	136456663	136456664	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:136456663_136456664insT	ENST00000586239.1	-	0	466				AC009264.1_ENST00000593789.1_RNA|AC009264.1_ENST00000598184.1_RNA|AC009264.1_ENST00000597642.1_RNA																							acttttttttctttttttttgg	0.411													3	4	---	---	---	---					
LOC101928733	101928733	broad.mit.edu	37	7	149095931	149095932	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:149095931_149095932insC	ENST00000417506.1	+	0	504_505																											AGCACTCCCTGCCCCTCCTCTA	0.505													2	4	---	---	---	---					
AC008060.8	0	broad.mit.edu	37	7	155232183	155232183	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr7:155232183delC	ENST00000419225.1	-	0	266																											CTGTGGGAATCCAGGGGACCC	0.677													2	4	---	---	---	---					
GS1-57L11.1	0	broad.mit.edu	37	8	2648686	2648687	+	RNA	DEL	TG	TG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:2648686_2648687delTG	ENST00000520024.1	+	0	176																											tgtgtgtgtctgtgtgtgtgtg	0.396													4	3	---	---	---	---					
PRSS51	346702	broad.mit.edu	37	8	10344132	10344133	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:10344132_10344133insA	ENST00000523024.1	-	0	609				PRSS51_ENST00000521149.1_RNA																							ccatctggtggaaaactgatca	0.470													2	4	---	---	---	---					
RP11-459E5.1	0	broad.mit.edu	37	8	22557127	22557130	+	RNA	DEL	AAGA	AAGA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:22557127_22557130delAAGA	ENST00000523627.1	+	0	164																											gaaaggaaggaagaaagaaagaaa	0.392													4	5	---	---	---	---					
RP1-84O15.2	0	broad.mit.edu	37	8	34190836	34190836	+	RNA	DEL	T	T	-	rs75348517		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:34190836delT	ENST00000522460.1	+	0	282																											CCATTTGTAAttttttttttt	0.443													2	4	---	---	---	---					
LOC101929268	101929268	broad.mit.edu	37	8	49539077	49539078	+	RNA	INS	-	-	GT	rs140695383	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:49539077_49539078insGT	ENST00000522575.1	+	0	356																											tgtaagtgcgagtgtgtgtgtg	0.520													6	13	---	---	---	---					
RP11-10H3.1	0	broad.mit.edu	37	8	50103552	50103591	+	RNA	DEL	TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	-	rs71227657		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:50103552_50103591delTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	ENST00000518222.1	+	0	271																											tctttatgtcttctttctttctttctttctttctttctttctttctttctttctttcttt	0.333													3	4	---	---	---	---					
RP11-400K9.4	0	broad.mit.edu	37	8	54432989	54432989	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:54432989delT	ENST00000426023.1	-	0	603																											atagctatgcttttttttttt	0.378													2	4	---	---	---	---					
LOC101929488	101929488	broad.mit.edu	37	8	58261924	58261925	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:58261924_58261925insG	ENST00000519714.1	+	0	1181																											AAATAGCTGTTGGGGGGTCTTA	0.535													3	4	---	---	---	---					
CTD-3046C4.1	0	broad.mit.edu	37	8	64318510	64318511	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:64318510_64318511insT	ENST00000521221.1	-	0	694																											TGTCATTGGACTTTTTTTTTTT	0.356													2	4	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	65039161	65039162	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:65039161_65039162insT	ENST00000524360.1	-	0	195				RP11-32K4.1_ENST00000521958.1_RNA|RP11-32K4.1_ENST00000523191.1_RNA																							taggaaagctgttttttttggc	0.490													2	4	---	---	---	---					
RP11-653B10.1	0	broad.mit.edu	37	8	83572855	83572855	+	RNA	DEL	T	T	-	rs148132994		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:83572855delT	ENST00000522776.1	-	0	36																											tgccagcaccttttttttttt	0.378													8	2	---	---	---	---					
LOC101927141	101927141	broad.mit.edu	37	8	83860422	83860422	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:83860422delA	ENST00000522123.1	-	0	57				CTD-2272D18.1_ENST00000524359.1_lincRNA																							accccatctcaaaaaaaaaaa	0.393													4	3	---	---	---	---					
RP11-120I21.2	0	broad.mit.edu	37	8	84962543	84962543	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:84962543delT	ENST00000523678.1	+	0	184																											ttgttggacatttggcgtggg	0.388													4	3	---	---	---	---					
AF121898.3	0	broad.mit.edu	37	8	88649784	88649785	+	RNA	DEL	GA	GA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:88649784_88649785delGA	ENST00000517711.1	-	0	182				AF121898.3_ENST00000518494.1_RNA|AF121898.3_ENST00000440763.2_RNA																							acaatgtcctgagaatTACCTA	0.396													2	4	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92588743	92588744	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:92588743_92588744insT	ENST00000518416.1	-	0	415																											TGGGAAGCATGTTTTTCAACAA	0.297													2	4	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92822333	92822334	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:92822333_92822334insA	ENST00000518416.1	-	0	285																											AACAATGAGACAAAAACAGTTC	0.421													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94234530	94234530	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:94234530delT	ENST00000520096.1	-	0	579				LINC00535_ENST00000520513.1_RNA|RP11-388K12.1_ENST00000517796.1_lincRNA|LINC00535_ENST00000517785.1_RNA																							ttaggcattcttagtcaaaag	0.438													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94278205	94278206	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:94278205_94278206insT	ENST00000520096.1	-	0	579				RP11-388K12.2_ENST00000522598.1_lincRNA|LINC00535_ENST00000520513.1_RNA																							tggcttatatattttttttatt	0.500													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94503238	94503239	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:94503238_94503239insT	ENST00000501400.1	-	0	1133					NR_033858.1																						ctcactggccatTTTTTTGTTG	0.292													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94661850	94661851	+	RNA	INS	-	-	AT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:94661850_94661851insAT	ENST00000501400.1	-	0	948					NR_033858.1																						GAGATTCCATAtttttgccctg	0.485													2	4	---	---	---	---					
LOC101927221	101927221	broad.mit.edu	37	8	103262323	103262324	+	RNA	INS	-	-	T	rs71268552		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:103262323_103262324insT	ENST00000499653.1	+	0	513				KB-431C1.4_ENST00000520820.1_RNA																							GCCAATGTGACttttttttttt	0.436													3	4	---	---	---	---					
LOC101927487	101927487	broad.mit.edu	37	8	112221484	112221484	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:112221484delG	ENST00000522778.1	-	0	122																											GTATAATAGTGGTAGGCATGA	0.378													2	4	---	---	---	---					
LINC00536	100859921	broad.mit.edu	37	8	116997863	116997863	+	RNA	DEL	A	A	-	rs34081572		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:116997863delA	ENST00000505156.2	-	0	1558					NR_046215.1																						GTTTTTTGTTAAAAAAAAAAA	0.289													5	1	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130424298	130424299	+	RNA	INS	-	-	TGTGTGTG	rs150942472	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:130424298_130424299insTGTGTGTG	ENST00000446592.3	-	0	360																											ATCATACTTTCtgtgtgtgtgt	0.455													2	4	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130446303	130446303	+	RNA	DEL	C	C	-	rs67761204		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:130446303delC	ENST00000446592.3	-	0	360				RP11-26E5.1_ENST00000519048.1_lincRNA																							cacacacacacaAAAAaaaaa	0.318													3	4	---	---	---	---					
RP11-419K12.1	0	broad.mit.edu	37	8	130694768	130694773	+	RNA	DEL	TGAGAC	TGAGAC	-	rs34920939		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:130694768_130694773delTGAGAC	ENST00000522667.1	-	0	108																											TTGTTAttattgagacagggtctcac	0.466											OREG0018985	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	5	---	---	---	---					
LOC401478	401478	broad.mit.edu	37	8	138877081	138877084	+	RNA	DEL	TTTG	TTTG	-	rs34554633		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:138877081_138877084delTTTG	ENST00000518973.1	-	0	514				RP11-238K6.2_ENST00000519652.1_lincRNA																							AAGTGTCTTTtttgtttgtttgtt	0.382													2	4	---	---	---	---					
LOC401478	401478	broad.mit.edu	37	8	139080418	139080419	+	RNA	DEL	TT	TT	-	rs55657408		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr8:139080418_139080419delTT	ENST00000518973.1	-	0	514				RP11-489O18.1_ENST00000521793.1_lincRNA																							tttcttcaagtttttttttttt	0.317													4	2	---	---	---	---					
VLDLR-AS1	401491	broad.mit.edu	37	9	2577485	2577486	+	RNA	INS	-	-	A	rs149496045	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:2577485_2577486insA	ENST00000416826.2	-	0	185				RP11-125B21.2_ENST00000453601.1_RNA																							AGTCCAAATCCAAAAAAAAAAG	0.351													2	4	---	---	---	---					
RFX3-AS1	101929302	broad.mit.edu	37	9	3661050	3661051	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:3661050_3661051insA	ENST00000423112.2	+	0	394																											AACAAAATCAGAAAACCAAGAg	0.421													2	4	---	---	---	---					
RP11-575I8.1	0	broad.mit.edu	37	9	27835412	27835413	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:27835412_27835413insG	ENST00000562922.1	+	0	213																											tgcgctgtgctgggggggcatc	0.614													2	4	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68400387	68400387	+	RNA	DEL	C	C	-	rs111626719		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:68400387delC	ENST00000417843.2	-	0	1432																											GATCTGGGGTCCTCTGATGAG	0.542													7	11	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68406251	68406251	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:68406251delA	ENST00000417843.2	-	0	224																											atcaatggggaaaagattccc	0.378													7	4	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68408397	68408397	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:68408397delC	ENST00000417843.2	-	0	67																											tattataacactatagctgtg	0.299													4	7	---	---	---	---					
RNA5SP284	100873537	broad.mit.edu	37	9	68409028	68409029	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:68409028_68409029insG	ENST00000417843.2	-	0	67				RNA5SP284_ENST00000384547.1_RNA																							ctggtaatagcggtaccgtagg	0.614													7	25	---	---	---	---					
LOC101928438	101928438	broad.mit.edu	37	9	102497904	102497904	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:102497904delA	ENST00000427039.1	-	0	190																											TGAGGATCACAAAAAAAAAGC	0.403													3	3	---	---	---	---					
LINC00587	414319	broad.mit.edu	37	9	105349033	105349034	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:105349033_105349034insA	ENST00000374801.3	+	0	267					NR_103830.1																						ctttaccaaagaaaaaaaaaTG	0.500													2	4	---	---	---	---					
RP11-281A20.2	0	broad.mit.edu	37	9	120568134	120568135	+	RNA	INS	-	-	T	rs12001924	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:120568134_120568135insT	ENST00000421509.2	+	0	121																											CATAAACATTCtttttttttct	0.386													2	4	---	---	---	---					
RP11-343J18.2	0	broad.mit.edu	37	9	128876586	128876587	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:128876586_128876587insT	ENST00000441473.1	+	0	235																											AGGTCATGCCCCTCTGCCCCCA	0.599													2	4	---	---	---	---					
RP11-247A12.2	0	broad.mit.edu	37	9	131945682	131945683	+	RNA	INS	-	-	TTCA	rs55653256	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr9:131945682_131945683insTTCA	ENST00000372490.3	+	0	367																											GTGttcatttgttcattcattc	0.480													2	4	---	---	---	---					
RP11-385N23.1	0	broad.mit.edu	37	10	7575258	7575259	+	RNA	INS	-	-	G	rs140338567	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:7575258_7575259insG	ENST00000414631.1	+	0	90_91																											agcatcactgcgggggcggggg	0.574													2	4	---	---	---	---					
RP11-543F8.2	0	broad.mit.edu	37	10	8477692	8477693	+	RNA	INS	-	-	T	rs68043344	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:8477692_8477693insT	ENST00000413286.1	+	0	141																											TGCCAATGGGATTTTTTTTTCC	0.455													4	2	---	---	---	---					
LINC00710	254312	broad.mit.edu	37	10	10989567	10989567	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:10989567delC	ENST00000428520.2	-	0	158					NR_015413.1																						gcctcggtgtcctcagtgcct	0.418													2	4	---	---	---	---					
WAC-AS1	220906	broad.mit.edu	37	10	28819668	28819668	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:28819668delG	ENST00000528337.1	-	0	620				WAC-AS1_ENST00000527986.1_RNA	NR_033805.1																						tagtacagatggggtttcaaa	0.502													2	4	---	---	---	---					
LOC101929475	101929475	broad.mit.edu	37	10	33292800	33292800	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:33292800delT	ENST00000450890.1	+	0	287																											ctgTACCAGATTTTTTTTTTT	0.328													2	4	---	---	---	---					
LOC101929475	101929475	broad.mit.edu	37	10	33299589	33299590	+	RNA	INS	-	-	T	rs113245948	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:33299589_33299590insT	ENST00000450890.1	+	0	287																											TCCATCTGGAATTGCACCATGA	0.495											OREG0020116	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	4	---	---	---	---					
RP11-309N24.1	0	broad.mit.edu	37	10	36186119	36186119	+	RNA	DEL	T	T	-	rs71739341		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:36186119delT	ENST00000442783.1	-	0	550																											aagcttcaggttttttttttt	0.383													2	4	---	---	---	---					
RP11-672F9.1	0	broad.mit.edu	37	10	38562927	38562927	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:38562927delT	ENST00000450980.1	+	0	144																											agctggtccatcagaatgcag	0.453													3	4	---	---	---	---					
ANKRD30BP3	338579	broad.mit.edu	37	10	45655882	45655882	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:45655882delA	ENST00000427229.2	+	0	2144																											gttggggttcaggaacagacc	0.393													2	4	---	---	---	---					
LINC00842	643650	broad.mit.edu	37	10	47109455	47109456	+	RNA	INS	-	-	C	rs11413452		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:47109455_47109456insC	ENST00000422732.2	-	0	435					NR_033957.1																						tagagcaTCCTCCCCCCCCATC	0.520													2	4	---	---	---	---					
RP11-170M17.1	0	broad.mit.edu	37	10	65601280	65601281	+	RNA	DEL	GA	GA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:65601280_65601281delGA	ENST00000444770.1	+	0	494																											ATGCGCGCACGAGAGAGAGAGA	0.416													2	4	---	---	---	---					
ZMIZ1-AS1	283050	broad.mit.edu	37	10	80732184	80732185	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:80732184_80732185insG	ENST00000456353.1	-	0	1012					NR_024431.2																						AAGCCCTGGCTGGGGGGGCTGC	0.614													2	4	---	---	---	---					
ZNF518A	9849	broad.mit.edu	37	10	97896416	97896416	+	RNA	DEL	A	A	-	rs138883279		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:97896416delA	ENST00000534948.1	+	0	456							Q6AHZ1	Z518A_HUMAN	zinc finger protein 518A						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(4)|lung(8)|ovary(1)|prostate(2)|urinary_tract(2)	24		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		atctctatttaaaaaaaaaTG	0.423													3	4	---	---	---	---					
CNNM1	26507	broad.mit.edu	37	10	101089521	101089522	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:101089521_101089522insC	ENST00000356713.4	+	1	666_667	c.377_378insC	c.(376-378)cccfs	p.P126fs	CNNM1_ENST00000370528.3_Intron|CNNM1_ENST00000446890.1_Intron	NM_020348.2	NP_065081.2	Q9NRU3	CNNM1_HUMAN	cyclin M1	126					ion transport	integral to membrane|plasma membrane				NS(1)|breast(2)|endometrium(3)|kidney(1)|large_intestine(10)|lung(5)|ovary(1)|prostate(1)|skin(1)	25		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		GTCCCCACTCGCCCCCCGGGAC	0.757													3	4	---	---	---	---					
LINC01514	101927396	broad.mit.edu	37	10	102948453	102948453	+	RNA	DEL	A	A	-	rs11303556		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:102948453delA	ENST00000434189.2	+	0	545																											actccgtctcaaaaaaaaaaa	0.502													2	4	---	---	---	---					
RP11-655H13.2	0	broad.mit.edu	37	10	110591860	110591861	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:110591860_110591861insC	ENST00000421481.1	+	0	69																											tgtagaaccaacccccatgact	0.386													2	4	---	---	---	---					
WDR11-AS1	283089	broad.mit.edu	37	10	122601765	122601765	+	RNA	DEL	A	A	-	rs56763571		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr10:122601765delA	ENST00000598981.1	-	0	103					NR_033850.1																						accttgtcttaaaaaaaaaaa	0.388													4	3	---	---	---	---					
RP11-179A10.1	0	broad.mit.edu	37	11	11163614	11163614	+	RNA	DEL	G	G	-	rs56336964		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:11163614delG	ENST00000525758.1	+	0	108																											ATACAGGGGAGCTGTGGGCTA	0.423													2	4	---	---	---	---					
RP11-531H8.2	0	broad.mit.edu	37	11	15630245	15630246	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:15630245_15630246insC	ENST00000533082.1	-	0	87																											aaaaaGCAGGACCCCCCCTTCA	0.351													2	4	---	---	---	---					
RP11-531H8.2	0	broad.mit.edu	37	11	15630858	15630859	+	RNA	INS	-	-	CA	rs35864841	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:15630858_15630859insCA	ENST00000533082.1	-	0	87																											AGATCACAAACCACACATTTGC	0.455													3	4	---	---	---	---					
RP11-587D21.4	0	broad.mit.edu	37	11	27769399	27769399	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:27769399delG	ENST00000530663.1	-	0	147																											ttgggaggccgaggcaggtgg	0.488													2	4	---	---	---	---					
RP11-115J23.1	0	broad.mit.edu	37	11	28900658	28900659	+	RNA	INS	-	-	T	rs139199628	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:28900658_28900659insT	ENST00000513853.1	+	0	304																											attggtggacattgggttggtt	0.361													2	4	---	---	---	---					
RP11-466I1.1	0	broad.mit.edu	37	11	29216789	29216790	+	RNA	DEL	AC	AC	-	rs141673696		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:29216789_29216790delAC	ENST00000530960.1	+	0	184																											acacacacagacacacacacac	0.347													6	3	---	---	---	---					
RP1-65P5.1	0	broad.mit.edu	37	11	32348861	32348861	+	RNA	DEL	T	T	-	rs59935767		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:32348861delT	ENST00000525689.1	-	0	122																											TTGATCTCCCTTTTTTTTTTT	0.383													2	4	---	---	---	---					
RP11-124G5.3	0	broad.mit.edu	37	11	41591613	41591614	+	RNA	INS	-	-	GTGC	rs150154163	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:41591613_41591614insGTGC	ENST00000526978.1	-	0	519																											tgtgtgtgtgtgcgtgtgCTGG	0.406													3	3	---	---	---	---					
RP11-430H10.4	0	broad.mit.edu	37	11	45520481	45520482	+	RNA	DEL	CA	CA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:45520481_45520482delCA	ENST00000528445.1	-	0	530				RP11-958J22.1_ENST00000533315.1_RNA																							atctctgtctcacacacacaca	0.500													2	4	---	---	---	---					
RP11-702H23.4	0	broad.mit.edu	37	11	74163074	74163074	+	RNA	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:74163074delC	ENST00000533008.1	+	0	154																											TAGTATCTGTCCCCCACACTT	0.443													2	4	---	---	---	---					
LOC283214	283214	broad.mit.edu	37	11	75476506	75476507	+	RNA	DEL	TT	TT	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:75476506_75476507delTT	ENST00000499390.2	-	0	154					NR_046090.1																						Cttatcttcctttttttttttt	0.525													2	4	---	---	---	---					
LOC101928989	101928989	broad.mit.edu	37	11	82094770	82094770	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:82094770delT	ENST00000500502.1	-	0	235																											ctggacaatgtttttatacac	0.522													2	4	---	---	---	---					
RP11-164N3.2	0	broad.mit.edu	37	11	87825517	87825518	+	RNA	INS	-	-	GAGGGAGG	rs139664037	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:87825517_87825518insGAGGGAGG	ENST00000531454.1	-	0	236																											agagagagggagggagagagag	0.520													2	4	---	---	---	---					
RP11-867G2.8	0	broad.mit.edu	37	11	94371067	94371067	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:94371067delG	ENST00000536540.1	-	0	437				RP11-867G2.8_ENST00000537874.1_RNA																							CCGTCGGACTGGGAGGATTCC	0.512													2	4	---	---	---	---					
RP11-867G2.8	0	broad.mit.edu	37	11	94421544	94421544	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:94421544delA	ENST00000536540.1	-	0	139				RP11-867G2.8_ENST00000537874.1_RNA																							tatgctcctgaataaccaatg	0.323													2	4	---	---	---	---					
RP11-94P11.4	0	broad.mit.edu	37	11	105107460	105107461	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:105107460_105107461insA	ENST00000528811.1	-	0	189																											acgagcatatgaaaaaaatgct	0.307													2	4	---	---	---	---					
RP11-708B6.2	0	broad.mit.edu	37	11	109245795	109245795	+	RNA	DEL	G	G	-	rs58455933	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:109245795delG	ENST00000532992.1	-	0	427																											aaaaaaAAAAGGGAAAGAGAA	0.353													4	2	---	---	---	---					
LINC00900	283143	broad.mit.edu	37	11	115631090	115631091	+	RNA	INS	-	-	C	rs140415173	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:115631090_115631091insC	ENST00000539305.1	+	0	163																											CCCTCCCGCCGCCCCCCCCTCG	0.683													2	4	---	---	---	---					
MIR100HG	399959	broad.mit.edu	37	11	121963924	121963925	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:121963924_121963925insT	ENST00000531381.1	-	0	732																											TAATGTTTCTCTTTTTTTATAA	0.297													2	4	---	---	---	---					
PKNOX2-AS1	103695364	broad.mit.edu	37	11	125032477	125032478	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr11:125032477_125032478insT	ENST00000532316.1	-	0	269																											TTGGATAATCATTTTTTAAGCT	0.327													2	4	---	---	---	---					
RP11-1038A11.1	0	broad.mit.edu	37	12	5513436	5513436	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:5513436delT	ENST00000538430.1	+	0	238																											gccttttttctccatgtgcgt	0.498													2	4	---	---	---	---					
LOC100506393	100506393	broad.mit.edu	37	12	20230190	20230191	+	RNA	DEL	AA	AA	-	rs10576937		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:20230190_20230191delAA	ENST00000536666.1	+	0	314					NR_040098.1																						aaaacaaaacaaaAAAAAAACA	0.337													5	1	---	---	---	---					
RP11-547C5.2	0	broad.mit.edu	37	12	43377747	43377747	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:43377747delA	ENST00000551279.1	-	0	405																											aatttacaagaaaaaaaaaca	0.348													2	4	---	---	---	---					
RP11-370I10.2	0	broad.mit.edu	37	12	48628846	48628847	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:48628846_48628847insA	ENST00000547523.1	-	0	269																											ggggtctttggaaaaaaaacag	0.411													2	4	---	---	---	---					
RP11-1100L3.7	0	broad.mit.edu	37	12	52474660	52474661	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:52474660_52474661insG	ENST00000550301.1	-	0	33				OR7E47P_ENST00000546390.1_RNA																							GGTCGTGGGGAGGGGGTGGTGA	0.649													2	4	---	---	---	---					
RP11-314D7.4	0	broad.mit.edu	37	12	73636614	73636615	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:73636614_73636615insA	ENST00000549058.1	-	0	306																											gaaatgcaatgaaaaaagatgt	0.307													2	4	---	---	---	---					
RP11-114H23.1	0	broad.mit.edu	37	12	76149117	76149118	+	RNA	INS	-	-	ACAC	rs56295424	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:76149117_76149118insACAC	ENST00000552856.1	-	0	326																											TCTGGATTTTTacacacacaca	0.421													2	4	---	---	---	---					
RP11-263K4.5	0	broad.mit.edu	37	12	82891290	82891290	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:82891290delA	ENST00000552532.1	-	0	27																											TGTCATAGTGAAAAAAAAAAG	0.338													2	4	---	---	---	---					
RP11-693J15.4	0	broad.mit.edu	37	12	92859562	92859562	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:92859562delG	ENST00000508671.1	+	0	305																											GGCTTTGGCCGCCATCCTAGG	0.418													2	4	---	---	---	---					
RP11-690J15.1	0	broad.mit.edu	37	12	98682371	98682372	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:98682371_98682372insG	ENST00000548344.1	-	0	36																											GGAAAACTGTCGGGGGGTAATA	0.312													2	4	---	---	---	---					
FAM101A	144347	broad.mit.edu	37	12	124719518	124719520	+	RNA	DEL	ATA	ATA	-	rs112028864		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:124719518_124719520delATA	ENST00000540762.1	+	0	444																											cattaccaccataatcatcatca	0.488													4	4	---	---	---	---					
LINC00944	387895	broad.mit.edu	37	12	127242569	127242569	+	RNA	DEL	A	A	-	rs72407170		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr12:127242569delA	ENST00000540684.1	-	0	333					NR_033878.1																						TAAGGCTGGGAAAAAAAAAAA	0.348													6	0	---	---	---	---					
TPTE2P6	374491	broad.mit.edu	37	13	25154164	25154165	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:25154164_25154165insT	ENST00000453498.1	+	0	411																											ccttaagtgagtttttttaatt	0.297													3	3	---	---	---	---					
EEF1DP3	196549	broad.mit.edu	37	13	32457540	32457540	+	RNA	DEL	A	A	-	rs10609699		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:32457540delA	ENST00000428783.1	+	0	99																											caaaaaaaacaaaaaaaaaaa	0.408													2	4	---	---	---	---					
RP11-141M1.3	0	broad.mit.edu	37	13	33963091	33963092	+	RNA	INS	-	-	T	rs67132574		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:33963091_33963092insT	ENST00000454681.2	-	0	260																											AGGGGTCCttcttttttttttt	0.480													3	4	---	---	---	---					
RP11-141M1.3	0	broad.mit.edu	37	13	34030570	34030571	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:34030570_34030571insC	ENST00000454681.2	-	0	226																											caagagatctgcccccctcagc	0.505													2	4	---	---	---	---					
SMIM2-AS1	101929212	broad.mit.edu	37	13	44743447	44743450	+	RNA	DEL	AAAG	AAAG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:44743447_44743450delAAAG	ENST00000437867.1	+	0	219																											agaaagaaaaaaagaaagaaagaa	0.314													3	5	---	---	---	---					
SMIM2-AS1	101929212	broad.mit.edu	37	13	44754425	44754426	+	RNA	DEL	CA	CA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:44754425_44754426delCA	ENST00000437867.1	+	0	219																											tctattctctcacagttctgga	0.441													5	2	---	---	---	---					
SMIM2-AS1	101929212	broad.mit.edu	37	13	44761954	44761954	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:44761954delT	ENST00000437867.1	+	0	219																											ATGCAGTTGATTTTTTCATTC	0.383													2	4	---	---	---	---					
RP11-442J21.1	0	broad.mit.edu	37	13	45248681	45248681	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:45248681delG	ENST00000426509.1	+	0	198																											cacgatgcctggcTCTGAAAT	0.403													2	4	---	---	---	---					
LINC00355	144766	broad.mit.edu	37	13	64618952	64618953	+	RNA	INS	-	-	AA	rs3064472		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:64618952_64618953insAA	ENST00000456627.1	-	0	770																											tctgtctcaagaaaaaaaaaaa	0.480													2	4	---	---	---	---					
LINC00348	100885781	broad.mit.edu	37	13	71677544	71677544	+	RNA	DEL	T	T	-	rs140378470		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:71677544delT	ENST00000428761.1	+	0	108					NR_047699.1																						ttcttacaagttttttttttt	0.353													2	4	---	---	---	---					
LINC00393	100874156	broad.mit.edu	37	13	74222185	74222186	+	RNA	INS	-	-	TTTGGTTCA	rs66720278		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:74222185_74222186insTTTGGTTCA	ENST00000452852.1	-	0	31																											aaaaaaaaaaCTTTGGTTCAGA	0.460													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	78954940	78954941	+	RNA	INS	-	-	T	rs144575662		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:78954940_78954941insT	ENST00000607862.1	+	0	315				RNF219-AS1_ENST00000606376.1_RNA|RNF219-AS1_ENST00000444769.3_RNA|RNF219-AS1_ENST00000560209.2_RNA|RNF219-AS1_ENST00000606803.1_RNA|RNF219-AS1_ENST00000607205.1_RNA|RNF219-AS1_ENST00000607220.1_RNA|RNF219-AS1_ENST00000606124.1_RNA|RNF219-AS1_ENST00000605996.1_RNA|RNF219-AS1_ENST00000607860.1_RNA|RNF219-AS1_ENST00000430549.2_RNA|RNF219-AS1_ENST00000606429.1_RNA																							ggaactcatcctttttatggct	0.416													3	6	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	79113301	79113301	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:79113301delG	ENST00000607862.1	+	0	315				RNF219-AS1_ENST00000606376.1_RNA|RNF219-AS1_ENST00000444769.3_RNA|RNF219-AS1_ENST00000560209.2_RNA|RNF219-AS1_ENST00000606803.1_RNA|RNF219-AS1_ENST00000607205.1_RNA|RNF219-AS1_ENST00000607220.1_RNA|RNF219-AS1_ENST00000606124.1_RNA|RNF219-AS1_ENST00000605996.1_RNA|RNF219-AS1_ENST00000607860.1_RNA|RNF219-AS1_ENST00000430549.2_RNA|RNF219-AS1_ENST00000606429.1_RNA																							ggagagaggtgggaggggagt	0.433													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	79129928	79129929	+	RNA	INS	-	-	A	rs142063951	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:79129928_79129929insA	ENST00000607862.1	+	0	315				RNF219-AS1_ENST00000606376.1_RNA|RNF219-AS1_ENST00000444769.3_RNA|RNF219-AS1_ENST00000560209.2_RNA|RNF219-AS1_ENST00000606803.1_RNA|RNF219-AS1_ENST00000607205.1_RNA|RNF219-AS1_ENST00000607220.1_RNA|RNF219-AS1_ENST00000606124.1_RNA|RNF219-AS1_ENST00000605996.1_RNA|RNF219-AS1_ENST00000607860.1_RNA|RNF219-AS1_ENST00000430549.2_RNA|RNF219-AS1_ENST00000606429.1_RNA																							GTGGTTAAGTTAAAAAAAAAAC	0.396													6	7	---	---	---	---					
LINC00343	144920	broad.mit.edu	37	13	106402715	106402716	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr13:106402715_106402716insC	ENST00000454555.2	+	0	927					NR_046391.1																						TGGCAGGCTGGCCCCCAGATGG	0.485													2	4	---	---	---	---					
RP11-597A11.1	0	broad.mit.edu	37	14	20138376	20138376	+	RNA	DEL	G	G	-	rs57620493		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:20138376delG	ENST00000548261.1	+	0	391																											ACAaaagaaagaaagaaagaa	0.388													4	4	---	---	---	---					
RP11-314P15.2	0	broad.mit.edu	37	14	26334319	26334320	+	RNA	INS	-	-	CTAT	rs142102969	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:26334319_26334320insCTAT	ENST00000546412.1	-	0	258																											CACTAGGAACACTATCTCCTTG	0.455													3	3	---	---	---	---					
RP11-314P15.2	0	broad.mit.edu	37	14	26479831	26479831	+	RNA	DEL	G	G	-	rs145515209		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:26479831delG	ENST00000546412.1	-	0	258																											taggcttggtggggggggggg	0.458													3	5	---	---	---	---					
NOVA1-AS1	387977	broad.mit.edu	37	14	27202326	27202327	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:27202326_27202327insC	ENST00000552826.1	+	0	186																											cccttcctccaccccaactact	0.396													2	4	---	---	---	---					
LOC101927062	101927062	broad.mit.edu	37	14	27266371	27266372	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:27266371_27266372insA	ENST00000549330.1	-	0	292				NOVA1-AS1_ENST00000552101.1_RNA|NOVA1-AS1_ENST00000548328.1_RNA|NOVA1-AS1_ENST00000552826.1_RNA																							gtataCTCACTAAAAAATTGGA	0.327													2	4	---	---	---	---					
RP11-384J4.2	0	broad.mit.edu	37	14	27427196	27427198	+	RNA	DEL	AAA	AAA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:27427196_27427198delAAA	ENST00000552303.1	+	0	205																											tcatgcatgtaaaaaaaaaaaaa	0.394													2	4	---	---	---	---					
RP11-384J4.2	0	broad.mit.edu	37	14	27618003	27618003	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:27618003delT	ENST00000552303.1	+	0	424																											tttctaactattttttgtacc	0.323													2	4	---	---	---	---					
LOC728755	728755	broad.mit.edu	37	14	27765327	27765328	+	RNA	INS	-	-	C	rs112978932	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:27765327_27765328insC	ENST00000553392.1	-	0	528																											ttctgccccagcccccccaaac	0.421													2	4	---	---	---	---					
LOC728755	728755	broad.mit.edu	37	14	28044922	28044923	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:28044922_28044923insA	ENST00000553392.1	-	0	262																											taatacattttaaaaaagaaat	0.312													2	4	---	---	---	---					
FOXG1-AS1	103695363	broad.mit.edu	37	14	29233401	29233402	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:29233401_29233402insT	ENST00000551395.1	-	0	135				RP11-966I7.1_ENST00000546560.1_RNA|RP11-966I7.1_ENST00000549487.1_RNA																							AGCTAATTTCGTTTTTTTTTTC	0.342													3	5	---	---	---	---					
RP11-305B6.3	0	broad.mit.edu	37	14	44542991	44542992	+	RNA	INS	-	-	T	rs140003670	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:44542991_44542992insT	ENST00000553827.1	-	0	69																											CTCCTTTTTTCTTTTTTTTAGT	0.337													3	4	---	---	---	---					
RP11-369C8.1	0	broad.mit.edu	37	14	46183338	46183338	+	RNA	DEL	A	A	-	rs34215564		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:46183338delA	ENST00000555442.1	-	0	603																											actccgtctcaaaaaaaaaaa	0.498													2	4	---	---	---	---					
LINC00519	161342	broad.mit.edu	37	14	51773730	51773731	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:51773730_51773731insC	ENST00000557518.1	-	0	257																											gtctgtctcttccccctctgca	0.431													4	7	---	---	---	---					
RP11-255G12.2	0	broad.mit.edu	37	14	51835988	51835989	+	RNA	INS	-	-	TTTG	rs112359877	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:51835988_51835989insTTTG	ENST00000555649.1	-	0	43																											GTTtttgtttatttgtttgttt	0.446													5	10	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57316729	57316730	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:57316729_57316730insG	ENST00000534909.2	+	0	287				OTX2-AS1_ENST00000554725.1_RNA|OTX2-AS1_ENST00000554358.1_RNA|OTX2-AS1_ENST00000554428.1_RNA	NR_029385.1																						aaaaagtgtttggggggcagag	0.455													4	7	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57318209	57318210	+	RNA	INS	-	-	CAGTA	rs150446705	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:57318209_57318210insCAGTA	ENST00000534909.2	+	0	287				OTX2-AS1_ENST00000554725.1_RNA|OTX2-AS1_ENST00000554358.1_RNA|OTX2-AS1_ENST00000554428.1_RNA	NR_029385.1																						tgagaatttgccagtacagtac	0.505													2	4	---	---	---	---					
RP11-618G20.1	0	broad.mit.edu	37	14	62218159	62218160	+	RNA	INS	-	-	G	rs72405304	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:62218159_62218160insG	ENST00000555937.1	+	0	148																											GTTTTTTAGATGGGGGGGGCGT	0.540													2	4	---	---	---	---					
RP11-11K13.1	0	broad.mit.edu	37	14	83261181	83261181	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:83261181delT	ENST00000554451.1	-	0	149																											CCTGGCCTCCTTTTTTTGTTT	0.383													2	4	---	---	---	---					
RP11-1152H15.1	0	broad.mit.edu	37	14	88220931	88220931	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr14:88220931delT	ENST00000554305.1	-	0	335																											TTCCCTGGTATTTTTTTTTCT	0.373													2	4	---	---	---	---					
CHEK2P2	646096	broad.mit.edu	37	15	20492133	20492136	+	RNA	DEL	ATAT	ATAT	-	rs55679326		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:20492133_20492136delATAT	ENST00000555186.1	+	0	568					NR_038836.1																						AAAAAGACAGATATATATATATAT	0.373													2	4	---	---	---	---					
SNHG14	104472715	broad.mit.edu	37	15	25360698	25360699	+	RNA	DEL	TC	TC	-	rs72377985		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:25360698_25360699delTC	ENST00000549804.2	+	0	4106_4107																											cccctgggtgtctctctctctc	0.525													2	4	---	---	---	---					
RP11-30G8.2	0	broad.mit.edu	37	15	27873415	27873416	+	RNA	INS	-	-	A	rs148330744	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:27873415_27873416insA	ENST00000553822.1	+	0	218																											aaaattataggaaaaaatagaa	0.267													3	3	---	---	---	---					
DPH6-AS1	100507466	broad.mit.edu	37	15	36011005	36011005	+	RNA	DEL	T	T	-	rs139552670		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:36011005delT	ENST00000501169.2	+	0	462					NR_038251.1																						TCTTTCTTTCTTTTTTTTTTT	0.383													3	4	---	---	---	---					
RP11-624L4.1	0	broad.mit.edu	37	15	39361704	39361705	+	RNA	INS	-	-	CC			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:39361704_39361705insCC	ENST00000560197.1	-	0	170				RP11-624L4.1_ENST00000561058.1_RNA|RP11-624L4.1_ENST00000560484.1_RNA																							TAGAGCCCCTGCCCCCCCTCAA	0.431													3	5	---	---	---	---					
RP11-265N7.2	0	broad.mit.edu	37	15	39467721	39467722	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:39467721_39467722insA	ENST00000558255.1	+	0	251				RP11-624L4.1_ENST00000558209.1_RNA|RP11-624L4.1_ENST00000561058.1_RNA|RP11-624L4.1_ENST00000560484.1_RNA																							TCAGATTTTTTATTCCCTGCCT	0.297													2	4	---	---	---	---					
RP11-624L4.1	0	broad.mit.edu	37	15	39620811	39620811	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:39620811delT	ENST00000559318.1	-	0	408				RP11-624L4.1_ENST00000558209.1_RNA|RP11-624L4.1_ENST00000560484.1_RNA																							GGGATAAACCTGTGTGTGTGT	0.393													2	4	---	---	---	---					
RP11-208K4.1	0	broad.mit.edu	37	15	48292886	48292887	+	RNA	INS	-	-	A	rs71864785		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:48292886_48292887insA	ENST00000560900.1	+	0	258																											AATCTTATTCCAAAAAAAAAAA	0.366													6	6	---	---	---	---					
LOC102723344	102723344	broad.mit.edu	37	15	63709234	63709235	+	RNA	INS	-	-	A	rs36075600		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:63709234_63709235insA	ENST00000559821.1	+	0	255																											aactccgtctcaaaaaaaaaaa	0.446													3	5	---	---	---	---					
RP11-138H8.3	0	broad.mit.edu	37	15	71069139	71069140	+	RNA	INS	-	-	T	rs111404241	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:71069139_71069140insT	ENST00000557828.1	-	0	87																											gagtcccctaattttttttcca	0.406													3	5	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81811715	81811715	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:81811715delA	ENST00000559211.1	+	0	98																											CTACAGAGTCaaggctggaaa	0.468													2	4	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81847411	81847412	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:81847411_81847412insT	ENST00000559211.1	+	0	98																											TATACACATTGttttttttttg	0.396													4	5	---	---	---	---					
RP11-499F3.2	0	broad.mit.edu	37	15	82051389	82051389	+	RNA	DEL	T	T	-	rs35953267		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:82051389delT	ENST00000560054.1	-	0	201																											TGAGTCCCACTTTTTTTTTTT	0.348													2	4	---	---	---	---					
RP11-648K4.2	0	broad.mit.edu	37	15	88228188	88228188	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:88228188delT	ENST00000560439.1	-	0	80																											ATCCTCTCTCTTTTGGGCAGC	0.433													2	4	---	---	---	---					
RP11-152L20.3	0	broad.mit.edu	37	15	92775391	92775392	+	RNA	INS	-	-	G	rs150893919	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:92775391_92775392insG	ENST00000561674.1	-	0	185																											tacggggTTGCGGGGGGCACTA	0.520													2	4	---	---	---	---					
RP11-266O8.1	0	broad.mit.edu	37	15	93856823	93856846	+	RNA	DEL	CCTCCCTCCCTTCCTTCCTTCCTT	CCTCCCTCCCTTCCTTCCTTCCTT	-	rs72151927		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:93856823_93856846delCCTCCCTCCCTTCCTTCCTTCCTT	ENST00000543286.1	+	0	421																											tccctccctccctccctcccttccttccttccttccttccttcc	0.536													2	4	---	---	---	---					
RP11-739G5.1	0	broad.mit.edu	37	15	94137511	94137511	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:94137511delA	ENST00000554318.2	+	0	324																											TATTGGGATGAAAAAAATTGT	0.378													2	4	---	---	---	---					
LINC01579	283682	broad.mit.edu	37	15	94304964	94304965	+	RNA	DEL	AT	AT	-	rs57958347		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:94304964_94304965delAT	ENST00000557481.2	-	0	540																											GACATTCCTCAtatttacttgt	0.446													7	4	---	---	---	---					
RP11-522B15.3	0	broad.mit.edu	37	15	96918836	96918836	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:96918836delT	ENST00000558499.1	+	0	123																											ACCTGGGttcttttttttttt	0.473													3	3	---	---	---	---					
CTD-2147F2.1	0	broad.mit.edu	37	15	97872248	97872248	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:97872248delT	ENST00000560314.1	+	0	443																											GCATATATGAttttttttttt	0.408													2	4	---	---	---	---					
CTD-2147F2.1	0	broad.mit.edu	37	15	97880601	97880602	+	RNA	INS	-	-	C	rs57566486	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:97880601_97880602insC	ENST00000560314.1	+	0	443																											CTGATATCAAACCCCCCCCCTT	0.322													2	4	---	---	---	---					
CTD-2147F2.1	0	broad.mit.edu	37	15	97911976	97911977	+	RNA	DEL	AG	AG	-	rs60943313	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:97911976_97911977delAG	ENST00000560314.1	+	0	443																											aaagaaagaaagagaaaaCGgg	0.431													2	4	---	---	---	---					
RP11-66B24.5	0	broad.mit.edu	37	15	101261353	101261354	+	RNA	DEL	TG	TG	-	rs74340930		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr15:101261353_101261354delTG	ENST00000559755.1	+	0	123																											AGATGGGTCTtgtgtgtgtgtg	0.505													2	4	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5393482	5393483	+	RNA	INS	-	-	T	rs142312812		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:5393482_5393483insT	ENST00000569895.1	+	0	304																											caccaggctaattttttttttt	0.500													5	1	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5840876	5840876	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:5840876delT	ENST00000569895.1	+	0	403																											tttttttttgttttttttttt	0.453													2	4	---	---	---	---					
RP11-279O17.3	0	broad.mit.edu	37	16	8404050	8404051	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:8404050_8404051insA	ENST00000564185.1	+	0	363																											gactccatcttaaaaaaaaaaa	0.436													4	5	---	---	---	---					
CTD-3037G24.3	0	broad.mit.edu	37	16	12680222	12680222	+	RNA	DEL	C	C	-	rs34480842		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:12680222delC	ENST00000564505.1	-	0	307																											acacgatcctccccgcctctg	0.493													3	4	---	---	---	---					
U91319.1	0	broad.mit.edu	37	16	13483982	13483983	+	RNA	DEL	TT	TT	-	rs3049137		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:13483982_13483983delTT	ENST00000571619.1	+	0	420																											TTTTCTAACCTTTTTTTTTTTT	0.337													2	4	---	---	---	---					
CTA-481E9.4	0	broad.mit.edu	37	16	18087286	18087286	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:18087286delT	ENST00000567304.1	-	0	144																											GAAAAAGGGATTTTTTTTTTA	0.468													2	4	---	---	---	---					
CTA-481E9.3	0	broad.mit.edu	37	16	18195594	18195594	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:18195594delT	ENST00000563866.1	-	0	48				CTA-481E9.4_ENST00000567304.1_lincRNA																							TGTCACAATGTTTTACAATGA	0.438													2	4	---	---	---	---					
ABCC6P1	653190	broad.mit.edu	37	16	18603631	18603631	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:18603631delA	ENST00000546162.2	+	0	1203					NR_003569.1																						aAgtgggaacaaaaactccac	0.433													2	4	---	---	---	---					
LOC653786	653786	broad.mit.edu	37	16	22586935	22586935	+	RNA	DEL	T	T	-	rs57921352		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:22586935delT	ENST00000550753.1	+	0	2407					NR_003676.2																						gttgtttctattttttttttt	0.398													3	4	---	---	---	---					
AC002331.1	0	broad.mit.edu	37	16	26596850	26596850	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:26596850delA	ENST00000443373.1	-	0	104																											cccaaatctcaaatacctatc	0.289													2	4	---	---	---	---					
RP11-652G5.1	0	broad.mit.edu	37	16	32618573	32618574	+	RNA	DEL	AA	AA	-	rs80051962		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:32618573_32618574delAA	ENST00000562976.1	+	0	383																											actccatctcaaaaaaaaaaaa	0.475													2	4	---	---	---	---					
RP11-467L24.1	0	broad.mit.edu	37	16	64417130	64417131	+	RNA	DEL	CA	CA	-	rs71849661		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:64417130_64417131delCA	ENST00000564046.1	+	0	116																											cccctatcttcacacacacaca	0.495													2	4	---	---	---	---					
RP11-351A20.1	0	broad.mit.edu	37	16	65640336	65640337	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:65640336_65640337insA	ENST00000563811.1	+	0	83																											ACCTAAAACACAAAAAAACACT	0.416													2	4	---	---	---	---					
LOC102724084	102724084	broad.mit.edu	37	16	80322280	80322280	+	RNA	DEL	A	A	-	rs34724233		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:80322280delA	ENST00000565050.1	-	0	598				RP11-525K10.3_ENST00000568819.1_RNA|RP11-525K10.3_ENST00000568776.1_RNA																							ttatttttttaaaaaAATGCA	0.363													4	4	---	---	---	---					
LOC102724084	102724084	broad.mit.edu	37	16	80592418	80592418	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr16:80592418delT	ENST00000568776.1	-	0	107																											cTTGTTGTGCTTTTGACAGTC	0.522													2	4	---	---	---	---					
TMEM220-AS1	101101775	broad.mit.edu	37	17	10694357	10694357	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:10694357delT	ENST00000580899.1	+	0	105					NR_073458.1																						GCTGGATGCCTTCAAGTGCTG	0.388													2	4	---	---	---	---					
COX10-AS1	100874058	broad.mit.edu	37	17	13818740	13818741	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:13818740_13818741insG	ENST00000602743.1	-	0	224																											ctgatacttttgggggtctgac	0.485													2	4	---	---	---	---					
LGALS9B	284194	broad.mit.edu	37	17	20370782	20370783	+	Translation_Start_Site	INS	-	-	TC	rs147679570		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:20370782_20370783insTC	ENST00000423676.3	-	0	64_65				LGALS9B_ENST00000324290.5_Start_Codon_Ins			Q3B8N2	LEG9B_HUMAN	lectin, galactoside-binding, soluble, 9B								sugar binding	p.M1fs*12(1)		central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(3)|skin(1)|upper_aerodigestive_tract(2)	10						GCTGAAGGCCATCTCCACCGCC	0.584													2	4	---	---	---	---					
CCDC144NL-AS1	440416	broad.mit.edu	37	17	20866843	20866844	+	RNA	DEL	AA	AA	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:20866843_20866844delAA	ENST00000582583.1	+	0	799				RP11-344E13.3_ENST00000581958.1_RNA|RP11-344E13.3_ENST00000583481.1_RNA|RP11-344E13.3_ENST00000439794.2_RNA|RP11-344E13.3_ENST00000580056.1_RNA|RP11-344E13.3_ENST00000423473.2_RNA																							caaaaaaattaaaaaaaaaaaa	0.485													2	4	---	---	---	---					
RP11-6N17.10	0	broad.mit.edu	37	17	46063791	46063792	+	RNA	INS	-	-	CTTTCAGTGTTGCT	rs150326492	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:46063791_46063792insCTTTCAGTGTTGCT	ENST00000578239.1	-	0	246																											TCTAATCCACCCTGGGCCTTTT	0.500													2	4	---	---	---	---					
RP11-6N17.10	0	broad.mit.edu	37	17	46066042	46066043	+	RNA	INS	-	-	C	rs58922861	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:46066042_46066043insC	ENST00000578239.1	-	0	246																											ATCCTTCCCCTCCCCCcacaca	0.460													2	4	---	---	---	---					
TOB1-AS1	400604	broad.mit.edu	37	17	48979926	48979926	+	RNA	DEL	A	A	-	rs71149327		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:48979926delA	ENST00000514358.1	+	0	161				TOB1-AS1_ENST00000523470.1_RNA																							gccctgtctcaaaaaaaaaaa	0.507													3	5	---	---	---	---					
RP11-583F2.1	0	broad.mit.edu	37	17	62928118	62928119	+	RNA	INS	-	-	A	rs59715610		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:62928118_62928119insA	ENST00000583052.1	+	0	438																											tctctactaccaaaaaaaaaaa	0.480													2	4	---	---	---	---					
RP11-143K11.5	0	broad.mit.edu	37	17	71185229	71185230	+	RNA	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:71185229_71185230insC	ENST00000580671.1	+	0	501																											tgtgtcatctgcccccaaatca	0.505													2	4	---	---	---	---					
DNAI2	64446	broad.mit.edu	37	17	72281229	72281229	+	Frame_Shift_Del	DEL	G	G	-	rs35985071	byFrequency	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr17:72281229delG	ENST00000579490.1	+	2	540	c.405delG	c.(403-405)gafs	p.E135fs	DNAI2_ENST00000311014.6_Frame_Shift_Del_p.E78fs|DNAI2_ENST00000446837.2_Frame_Shift_Del_p.E78fs|DNAI2_ENST00000307504.5_5'UTR|DNAI2_ENST00000582036.1_Frame_Shift_Del_p.E78fs			Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate chain 2	78					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(6)|liver(2)|lung(19)|ovary(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	39						ACCATGTCGAGGGGGGCTGGC	0.562									Kartagener syndrome				22	77	---	---	---	---					
RP11-161I6.2	0	broad.mit.edu	37	18	2105785	2105796	+	RNA	DEL	TATGTGTGTGTG	TATGTGTGTGTG	-	rs113989860		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:2105785_2105796delTATGTGTGTGTG	ENST00000579097.1	-	0	310																											ttaaaaTATATAtgtgtgtgtgtgtgtgtgtg	0.429													3	3	---	---	---	---					
RP11-138E9.2	0	broad.mit.edu	37	18	10329338	10329338	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:10329338delA	ENST00000582531.1	-	0	385																											GTACTCTTGGAAGGCCATACT	0.473													2	4	---	---	---	---					
RP11-739N10.1	0	broad.mit.edu	37	18	25013324	25013325	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:25013324_25013325insT	ENST00000584546.1	-	0	447																											gtttatttctcttttttttttt	0.376													2	4	---	---	---	---					
RP11-739N10.1	0	broad.mit.edu	37	18	25047224	25047225	+	RNA	INS	-	-	GTCTC	rs71376991	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:25047224_25047225insGTCTC	ENST00000584546.1	-	0	447																											AGGAAGGGCTTGTCTGCTGAGT	0.401													2	4	---	---	---	---					
RP11-739N10.1	0	broad.mit.edu	37	18	25115691	25115692	+	RNA	DEL	AC	AC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:25115691_25115692delAC	ENST00000584546.1	-	0	260																											AATATTCATTacacacacacac	0.272													3	3	---	---	---	---					
LINC00669	647946	broad.mit.edu	37	18	37043504	37043504	+	RNA	DEL	A	A	-	rs141861299		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:37043504delA	ENST00000591629.1	-	0	440					NR_024391.1																						TCACTGAGGTAAAAAAAAAAA	0.308													5	4	---	---	---	---					
LINC00669	647946	broad.mit.edu	37	18	37185018	37185018	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:37185018delT	ENST00000591629.1	-	0	282					NR_024391.1																						TCAAATGCTCTGTGGTAGAAA	0.423													2	4	---	---	---	---					
LINC00669	647946	broad.mit.edu	37	18	37256294	37256294	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:37256294delA	ENST00000591629.1	-	0	282					NR_024391.1																						GGGACCATCTAAAAAATCAGC	0.433													2	4	---	---	---	---					
RP11-671P2.1	0	broad.mit.edu	37	18	51089832	51089833	+	RNA	DEL	CC	CC	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:51089832_51089833delCC	ENST00000582064.1	-	0	120																											TCTAGTTTTTCCCAGAAAGGTG	0.396													2	4	---	---	---	---					
LOC101927273	101927273	broad.mit.edu	37	18	53575306	53575306	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:53575306delT	ENST00000563553.1	-	0	38				CTD-2008L17.1_ENST00000589440.1_lincRNA																							TGGCATACTCTTTTTTTTTTC	0.398													2	4	---	---	---	---					
LOC642484	642484	broad.mit.edu	37	18	53716157	53716158	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr18:53716157_53716158insT	ENST00000382897.2	-	0	1067																											gggttgagcaccattttcagct	0.366													2	4	---	---	---	---					
CTB-52I2.5	0	broad.mit.edu	37	19	18128876	18128877	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:18128876_18128877insA	ENST00000598385.1	-	0	162																											cccatctctacaaaaaaaaaaa	0.545													3	4	---	---	---	---					
CTC-513N18.6	0	broad.mit.edu	37	19	20671902	20671902	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:20671902delA	ENST00000598131.1	+	0	256																											GATCTTCTGGAAAAAAAAAAA	0.313													2	4	---	---	---	---					
LOC100420587	100420587	broad.mit.edu	37	19	29118140	29118140	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:29118140delT	ENST00000592347.1	-	0	642				AC005616.1_ENST00000589999.1_RNA|AC005394.1_ENST00000585394.1_lincRNA																							tctttcttccttttttttttt	0.358													3	3	---	---	---	---					
HPN-AS1	100128675	broad.mit.edu	37	19	35575877	35575878	+	RNA	DEL	CA	CA	-	rs72401910		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:35575877_35575878delCA	ENST00000392227.2	-	0	404					NR_024562.1																						TCCGCCAGCGcacacacacaca	0.505													2	4	---	---	---	---					
CTC-301O7.4	0	broad.mit.edu	37	19	49838175	49838176	+	RNA	DEL	AG	AG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:49838175_49838176delAG	ENST00000358234.4	-	0	132																											AAAGAAACACAGAGAGAGGGAG	0.490													2	4	---	---	---	---					
ZNF761	388561	broad.mit.edu	37	19	53948237	53948237	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:53948237delT	ENST00000454407.1	+	0	55							Q86XN6	ZN761_HUMAN	zinc finger protein 761						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(5)|lung(13)|ovary(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	30				GBM - Glioblastoma multiforme(134;0.00786)		cttttttttcttttttttttt	0.448													3	4	---	---	---	---					
SHISA7	729956	broad.mit.edu	37	19	55944700	55944702	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr19:55944700_55944702delGTG	ENST00000376325.4	-	4	1437_1439	c.1438_1440delCAC	c.(1438-1440)del	p.H480del		NM_001145176.1	NP_001138648.1	A6NL88	SHSA7_HUMAN	shisa family member 7	480						integral to membrane				skin(1)	1						CGTGCAGGGCGTGGTGGTGGTGG	0.793													2	4	---	---	---	---					
LOC727993	727993	broad.mit.edu	37	20	1951589	1951590	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr20:1951589_1951590insG	ENST00000446562.1	+	0	1216																											ctgcaggtgttggggggaggtg	0.441													2	4	---	---	---	---					
RP11-103J8.1	0	broad.mit.edu	37	20	10676850	10676850	+	RNA	DEL	T	T	-	rs67862973		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr20:10676850delT	ENST00000605292.1	+	0	98																											TGTGAGTTTCTTTTTTTTTTA	0.498													3	4	---	---	---	---					
RP11-49G10.3	0	broad.mit.edu	37	20	31803980	31803981	+	RNA	INS	-	-	T	rs71945127		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr20:31803980_31803981insT	ENST00000419613.1	-	0	148																											taccttacatcttttttttttt	0.485													2	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11077536	11077537	+	RNA	DEL	GA	GA	-	rs112276026		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:11077536_11077537delGA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		acaacaaggcgagactcttgtc	0.416													3	5	---	---	---	---					
CHODL-AS1	54075	broad.mit.edu	37	21	19237121	19237121	+	RNA	DEL	G	G	-	rs7280263		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:19237121delG	ENST00000447175.1	-	0	147					NR_024354.1																						aaaatacaaagaaaaaatcag	0.522													2	4	---	---	---	---					
LOC101927797	101927797	broad.mit.edu	37	21	20098512	20098513	+	RNA	INS	-	-	AC	rs80281290	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:20098512_20098513insAC	ENST00000437492.1	-	0	332																											tataaatacctacctcacaaag	0.312													4	2	---	---	---	---					
AP000705.7	0	broad.mit.edu	37	21	23605003	23605003	+	RNA	DEL	A	A	-	rs66463347		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:23605003delA	ENST00000444130.1	+	0	385																											ggaaggaaggaaaagaaggaa	0.388													4	2	---	---	---	---					
LINC00158	54072	broad.mit.edu	37	21	26766536	26766537	+	RNA	INS	-	-	T	rs77524707		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:26766536_26766537insT	ENST00000332587.4	-	0	957					NR_024027.2																						GGGGCCttttgttttttttttt	0.470													2	4	---	---	---	---					
AJ006995.3	0	broad.mit.edu	37	21	29332903	29332904	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:29332903_29332904insG	ENST00000433344.1	+	0	102																											aatgcattcctggggggaggtc	0.426													2	4	---	---	---	---					
LOC284825	284825	broad.mit.edu	37	21	29452073	29452073	+	RNA	DEL	A	A	-	rs11340329		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr21:29452073delA	ENST00000426534.1	+	0	124																											GATACTCAGGAAAAAAAAAAA	0.313													2	4	---	---	---	---					
MIATNB	102724827	broad.mit.edu	37	22	27104094	27104095	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:27104094_27104095insT	ENST00000437071.1	+	0	183																											ttacttatttattagagacagg	0.441													2	4	---	---	---	---					
MIATNB	102724827	broad.mit.edu	37	22	27117003	27117004	+	RNA	INS	-	-	G	rs150988863	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:27117003_27117004insG	ENST00000437071.1	+	0	183																											GTGGGGGTTGCGGGGAGCACCA	0.594													6	2	---	---	---	---					
LL22NC03-86D4.1	0	broad.mit.edu	37	22	34421974	34421974	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:34421974delG	ENST00000412218.1	+	0	55																											TGGGTGTCCTGGGGAAAAGAG	0.398													2	4	---	---	---	---					
TOM1	10043	broad.mit.edu	37	22	35719897	35719897	+	Frame_Shift_Del	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:35719897delC	ENST00000382034.5	+	7	779	c.437delC	c.(436-438)acfs	p.T146fs	TOM1_ENST00000425375.1_Frame_Shift_Del_p.T168fs|TOM1_ENST00000449058.2_Frame_Shift_Del_p.T213fs|TOM1_ENST00000411850.1_Frame_Shift_Del_p.T213fs|TOM1_ENST00000436462.2_Frame_Shift_Del_p.T175fs|TOM1_ENST00000447733.1_Frame_Shift_Del_p.T180fs			O60784	TOM1_HUMAN	target of myb1 (chicken)	213	VHS.				endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			NS(1)|breast(2)|kidney(2)|large_intestine(2)|lung(7)|ovary(3)|prostate(2)	19						ATAGCACCAACCCCGGAACAG	0.642													16	85	---	---	---	---					
CELSR1	9620	broad.mit.edu	37	22	46773101	46773101	+	Frame_Shift_Del	DEL	C	C	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:46773101delC	ENST00000262738.3	-	24	7440	c.7441delG	c.(7441-7443)cafs	p.A2482fs		NM_014246.1	NP_055061.1	Q9NYQ6	CELR1_HUMAN	cadherin, EGF LAG seven-pass G-type receptor 1	2482					central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			breast(8)|central_nervous_system(5)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(5)|kidney(4)|large_intestine(13)|lung(27)|ovary(2)|pancreas(2)|prostate(3)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(3)	95		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		AGCAGGGCTGCCAGTGACAAG	0.612													2	4	---	---	---	---					
LOC284930	284930	broad.mit.edu	37	22	48075385	48075386	+	RNA	INS	-	-	C	rs11461833	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:48075385_48075386insC	ENST00000423737.1	+	0	387																											catccatccatcatccatccat	0.480													3	5	---	---	---	---					
LOC284930	284930	broad.mit.edu	37	22	48130165	48130166	+	RNA	INS	-	-	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chr22:48130165_48130166insG	ENST00000423737.1	+	0	982																											acccatcctttgggggtattct	0.500													2	4	---	---	---	---					
PTCHD1-AS	100873065	broad.mit.edu	37	X	22642563	22642564	+	RNA	DEL	TG	TG	-	rs5901712		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:22642563_22642564delTG	ENST00000455399.1	-	0	178																											AGTATATATAtgtgtgtgtgtg	0.342													5	0	---	---	---	---					
RP11-305F18.1	0	broad.mit.edu	37	X	33759600	33759600	+	RNA	DEL	G	G	-	rs61073309		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:33759600delG	ENST00000439992.1	+	0	128																											gattttttttgggggggggga	0.423													4	4	---	---	---	---					
RP11-305F18.1	0	broad.mit.edu	37	X	33942849	33942850	+	RNA	INS	-	-	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:33942849_33942850insT	ENST00000439992.1	+	0	229																											gccaattatcatttttagagaa	0.406													2	4	---	---	---	---					
LOC101928627	101928627	broad.mit.edu	37	X	36446756	36446757	+	RNA	DEL	GT	GT	-	rs57717267		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:36446756_36446757delGT	ENST00000455438.1	-	0	4369																											gtgtgtgcgcgtgtgtgtgtgt	0.332													2	4	---	---	---	---					
FAM47C	442444	broad.mit.edu	37	X	37027986	37027987	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:37027986_37027987insC	ENST00000358047.3	+	1	1555_1556	c.1503_1504insC	c.(1501-1506)gaccccfs	p.DP501fs		NM_001013736.2	NP_001013758.1	Q5HY64	FA47C_HUMAN	family with sequence similarity 47, member C	501										breast(4)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(63)|ovary(6)|pancreas(1)|prostate(6)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	120						TCTGCCCAGAGCCCCCCAAGAC	0.609													7	396	---	---	---	---					
RP1-154K9.2	0	broad.mit.edu	37	X	42410530	42410531	+	RNA	INS	-	-	TG	rs3078284		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:42410530_42410531insTG	ENST00000411879.1	+	0	523																											TTGACTTAACTtgtgtgtgtgt	0.391													4	3	---	---	---	---					
RP1-154K9.2	0	broad.mit.edu	37	X	42546190	42546191	+	RNA	DEL	AG	AG	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:42546190_42546191delAG	ENST00000411879.1	+	0	748																											agagaaagaaagagagagagag	0.470													4	8	---	---	---	---					
LINC01278	92249	broad.mit.edu	37	X	62773006	62773007	+	RNA	INS	-	-	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:62773006_62773007insA	ENST00000433061.1	-	0	218																											ttacttgtcacaaaaaagcctg	0.327													2	4	---	---	---	---					
RP5-964N17.1	0	broad.mit.edu	37	X	112909430	112909430	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:112909430delA	ENST00000468762.2	-	0	26																											aactatagataaagggggacc	0.363													2	4	---	---	---	---					
RP1-30E17.2	0	broad.mit.edu	37	X	127491311	127491311	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:127491311delA	ENST00000449485.1	-	0	362																											AAAGCAGAAGAAAAAAAATAG	0.378													2	4	---	---	---	---					
LINC01201	104266960	broad.mit.edu	37	X	130131095	130131095	+	RNA	DEL	G	G	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:130131095delG	ENST00000451431.1	-	0	134																											AAGGTGGTTAGGGGGCCTCCA	0.478													2	4	---	---	---	---					
GS1-256O22.5	0	broad.mit.edu	37	X	142435840	142435840	+	RNA	DEL	A	A	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:142435840delA	ENST00000431432.1	+	0	90																											GGCtaaatttaaaaaaaaaaa	0.363													3	3	---	---	---	---					
GS1-256O22.5	0	broad.mit.edu	37	X	142491624	142491624	+	RNA	DEL	T	T	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	92bc438b-02c1-4b81-a90a-4a1302786a81	5dc347a7-4f8f-4040-aa56-e92f99cfc4b3	g.chrX:142491624delT	ENST00000431432.1	+	0	268																											ATATTTGACCTTTTTTTTTTT	0.353													3	3	---	---	---	---					
