Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TUSC3	7991	broad.mit.edu	37	8	15605968	15605968	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:15605968C>A	ENST00000382020.4	+	9	1230	c.1022C>A	c.(1021-1023)cCt>cAt	p.P341H	TUSC3_ENST00000506802.1_Intron|TUSC3_ENST00000503731.1_Missense_Mutation_p.P341H	NM_178234.2	NP_839952.1	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3	341					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(10)|lung(10)|ovary(2)	28				Colorectal(111;0.113)		CACGGCTATCCTTATAGGTAA	0.323000													53	36					2.12129e-23	3.24329e-23	0.870114	1	0
IRX1	79192	broad.mit.edu	37	5	3599657	3599657	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:3599657G>C	ENST00000302006.3	+	2	647	c.595G>C	c.(595-597)Gac>Cac	p.D199H	CTD-2012M11.3_ENST00000559410.1_RNA	NM_024337.3	NP_077313.3	P78414	IRX1_HUMAN	iroquois homeobox 1	199						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			biliary_tract(1)|endometrium(5)|kidney(2)|large_intestine(5)|lung(18)|ovary(2)|pancreas(1)|prostate(5)|soft_tissue(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	43						GCGCAGCAAGGACCAGGAAGA	0.622000													10	37					0	0	0.335167	0	0
PLXNA4	91584	broad.mit.edu	37	7	131895890	131895890	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:131895890G>T	ENST00000359827.3	-	10	3072	c.2110C>A	c.(2110-2112)Ctg>Atg	p.L704M	PLXNA4_ENST00000321063.4_Missense_Mutation_p.L704M			Q9HCM2	PLXA4_HUMAN	plexin A4	704						integral to membrane|intracellular|plasma membrane				NS(1)|breast(1)|endometrium(3)|kidney(4)|large_intestine(14)|lung(17)|ovary(1)|prostate(2)|skin(1)|stomach(1)	45						ACTCGCAGCAGCTGGGGGCAG	0.617000													3	12					0.00909568	0.0116854	0.150653	1	0
SNHG14	104472715	broad.mit.edu	37	15	25330355	25330355	+	RNA	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:25330355G>T	ENST00000546682.1	+	0	339				SNHG14_ENST00000549804.2_RNA	NR_003361.1																						GGCATAGAAGGAAGGCCAGTG	0.517000													8	3					7.48243e-07	1.04079e-06	0.335167	1	0
FOLH1	2346	broad.mit.edu	37	11	49175441	49175441	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:49175441C>A	ENST00000340334.7	-	18	2250	c.1882G>T	c.(1882-1884)Gct>Tct	p.A628S	FOLH1_ENST00000256999.2_Missense_Mutation_p.A643S|FOLH1_ENST00000343844.4_Missense_Mutation_p.A335S|FOLH1_ENST00000356696.3_Missense_Mutation_p.A643S|FOLH1_ENST00000533034.1_Missense_Mutation_p.A628S	NM_001193471.1|NM_001193472.1	NP_001180400.1|NP_001180401.1	Q04609	FOLH1_HUMAN	folate hydrolase (prostate-specific membrane antigen) 1	643					proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity	p.A643S(2)		NS(2)|breast(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(7)|lung(34)|ovary(1)|skin(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	60					Capromab(DB00089)|L-Glutamic Acid(DB00142)	AACTTGGAAGCAATTTCTGTA	0.313000													31	51					1.21669e-08	1.73145e-08	0.779181	1	0
TIPIN	54962	broad.mit.edu	37	15	66629365	66629365	+	Silent	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:66629365C>T	ENST00000261881.4	-	8	922	c.837G>A	c.(835-837)ctG>ctA	p.L279L	TIPIN_ENST00000367709.4_Silent_p.L178L	NM_017858.2	NP_060328.2	Q9BVW5	TIPIN_HUMAN	TIMELESS interacting protein	279					cell division|DNA replication checkpoint|intra-S DNA damage checkpoint|mitosis|positive regulation of cell proliferation|regulation of DNA replication involved in S phase|replication fork protection	cytoplasm|nuclear chromatin	protein binding			autonomic_ganglia(1)|central_nervous_system(1)|endometrium(1)|large_intestine(1)|ovary(1)|skin(1)|stomach(1)	7						AAGACTGGTCCAGCAGTGTTT	0.353000													3	63					0	0	0.150653	0	0
PLEC	5339	broad.mit.edu	37	8	144991968	144991968	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:144991968G>A	ENST00000322810.4	-	32	12601	c.12432C>T	c.(12430-12432)gcC>gcT	p.A4144A	PLEC_ENST00000356346.3_Silent_p.A3993A|PLEC_ENST00000527096.1_Silent_p.A4030A|PLEC_ENST00000345136.3_Silent_p.A4007A|PLEC_ENST00000354958.2_Silent_p.A3985A|PLEC_ENST00000436759.2_Silent_p.A4034A|PLEC_ENST00000354589.3_Silent_p.A4007A|PLEC_ENST00000357649.2_Silent_p.A4011A|PLEC_ENST00000398774.2_Silent_p.A3975A	NM_201380.2	NP_958782.1	Q15149	PLEC_HUMAN	plectin	4144	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle			NS(1)|breast(3)|central_nervous_system(4)|cervix(7)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(8)|lung(57)|ovary(4)|pancreas(2)|prostate(11)|skin(9)|stomach(2)|upper_aerodigestive_tract(10)	137						CGGCGCGCTCGGCCGACAGCA	0.602000													7	25					0	0	0.387290	0	0
HIVEP2	3097	broad.mit.edu	37	6	143092538	143092538	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:143092538G>T	ENST00000367603.2	-	5	4080	c.3338C>A	c.(3337-3339)gCt>gAt	p.A1113D	HIVEP2_ENST00000012134.2_Missense_Mutation_p.A1113D|HIVEP2_ENST00000367604.1_Missense_Mutation_p.A1113D	NM_006734.3	NP_006725.3	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer binding protein 2	1113					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(2)|breast(4)|central_nervous_system(6)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(19)|lung(35)|ovary(4)|prostate(6)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	100				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CCGGAGGCCAGCATGCAGGTG	0.652000													4	60					0.00909568	0.0116854	0.150653	1	0
CCNB3	85417	broad.mit.edu	37	X	50054191	50054191	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chrX:50054191C>A	ENST00000376042.1	+	6	3320	c.3022C>A	c.(3022-3024)Ctc>Atc	p.L1008I	CCNB3_ENST00000376038.1_Intron|CCNB3_ENST00000276014.7_Missense_Mutation_p.L1008I|CCNB3_ENST00000348603.2_Intron			Q8WWL7	CCNB3_HUMAN	cyclin B3	1008					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			breast(3)|cervix(1)|endometrium(5)|kidney(4)|large_intestine(9)|lung(41)|ovary(4)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	75	Ovarian(276;0.236)					TGAGGCATTCCTCTTCGAAGA	0.493000													4	94					0.150653	0.183361	0.150653	1	0
HIST2H2BF	440689	broad.mit.edu	37	1	149783693	149783693	+	Silent	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:149783693G>T	ENST00000427880.2	-	1	232	c.186C>A	c.(184-186)atC>atA	p.I62I	HIST2H2BF_ENST00000369167.1_Silent_p.I62I|HIST2H2BF_ENST00000545683.1_Silent_p.I62I|HIST2H2BF_ENST00000469483.1_5'UTR			Q5QNW6	H2B2F_HUMAN	histone cluster 2, H2bf	62					nucleosome assembly	nucleosome|nucleus	DNA binding	p.I62I(1)		breast(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(6)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	15	Breast(34;0.0124)|all_hematologic(923;0.127)					AGGAGTTCATGATGCCCATGG	0.612000													35	399					1.89013e-27	2.91395e-27	0.870114	1	0
BICD1	636	broad.mit.edu	37	12	32459005	32459005	+	Silent	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:32459005C>T	ENST00000548411.1	+	4	1135	c.954C>T	c.(952-954)ttC>ttT	p.F318F	BICD1_ENST00000281474.5_Silent_p.F318F	NM_001003398.1	NP_001003398.1	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 (Drosophila)	318					anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			NS(1)|breast(2)|central_nervous_system(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(9)|lung(14)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	46	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			CTGACTTATTCAGTGAGCTGA	0.443000													12	71					0	0	0.435327	0	0
TMA16	55319	broad.mit.edu	37	4	164438619	164438619	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:164438619A>G	ENST00000358572.5	+	6	763	c.422A>G	c.(421-423)aAa>aGa	p.K141R	TMA16_ENST00000508268.1_Missense_Mutation_p.K141R|TMA16_ENST00000513272.1_3'UTR|TMA16_ENST00000513134.1_Intron	NM_018352.2	NP_060822.2	Q96EY4	CD043_HUMAN	translation machinery associated 16 homolog (S. cerevisiae)	141																	AGTAATCTGAAAACATTTAGG	0.368000													3	80					0	0	0.150653	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346349	89346349	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:89346349C>A	ENST00000301030.4	-	9	7061	c.6601G>T	c.(6601-6603)Gca>Tca	p.A2201S	ANKRD11_ENST00000378330.2_Missense_Mutation_p.A2201S	NM_001256183.1|NM_013275.5	NP_001243112.1|NP_037407.4	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2201	Pro-rich.					nucleus				breast(4)|central_nervous_system(3)|endometrium(17)|kidney(2)|large_intestine(18)|lung(20)|ovary(6)|pancreas(1)|prostate(2)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	83		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TCGAGCTCTGCAGGGAGCCGG	0.687000													3	20					3.59834e-05	4.8948e-05	0.217242	1	0
FSD2	123722	broad.mit.edu	37	15	83434003	83434003	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:83434003T>C	ENST00000334574.8	-	11	1916	c.1735A>G	c.(1735-1737)Att>Gtt	p.I579V	FSD2_ENST00000541889.1_Missense_Mutation_p.I534V			A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing 2	579	B30.2/SPRY.									breast(2)|central_nervous_system(1)|large_intestine(5)|lung(10)	18						TCTTCAGAAATGGTCAGCCAG	0.542000													22	84					0	0	0.667858	0	0
WDR96	80217	broad.mit.edu	37	10	105942139	105942139	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:105942139G>A	ENST00000357060.3	-	17	2389	c.2274C>T	c.(2272-2274)tcC>tcT	p.S758S	WDR96_ENST00000278064.2_Silent_p.S689S|WDR96_ENST00000428666.1_Silent_p.S759S	NM_025145.5	NP_079421.5	Q8NDM7	WDR96_HUMAN	WD repeat domain 96	758										NS(1)|breast(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|kidney(7)|large_intestine(14)|lung(21)|ovary(4)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(3)	72						GTTCAGAATCGGATCCCAAAT	0.378000													9	242					0	0	0.479597	0	0
ZNF296	162979	broad.mit.edu	37	19	45575762	45575762	+	Silent	SNP	G	G	A	rs140362077	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:45575762G>A	ENST00000303809.2	-	3	739	c.525C>T	c.(523-525)caC>caT	p.H175H		NM_145288.1	NP_660331.1	Q8WUU4	ZN296_HUMAN	zinc finger protein 296	175					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|lung(3)|prostate(1)|urinary_tract(2)	7						CCCACTGGGCGTGACGCAGCA	0.632000													11	37					0	0	0.500413	0	0
DVL3	1857	broad.mit.edu	37	3	183885740	183885740	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:183885740G>C	ENST00000313143.3	+	13	1633	c.1385G>C	c.(1384-1386)aGg>aCg	p.R462T	DVL3_ENST00000431765.1_Missense_Mutation_p.R445T|EIF2B5_ENST00000444495.1_Intron	NM_004423.3	NP_004414.3	Q92997	DVL3_HUMAN	dishevelled segment polarity protein 3	462	DEP.				canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			breast(1)|central_nervous_system(1)|endometrium(11)|large_intestine(6)|liver(1)|lung(13)|ovary(1)|prostate(1)	35	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			ACGGACCGGAGGGAGGCCCGC	0.572000													37	139					0	0	0.859065	0	0
SPRR3	6707	broad.mit.edu	37	1	152975728	152975728	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:152975728C>A	ENST00000331860.3	+	3	382	c.232C>A	c.(232-234)Cct>Act	p.P78T	SPRR3_ENST00000542696.1_Missense_Mutation_p.P78T|SPRR3_ENST00000295367.4_Missense_Mutation_p.P78T	NM_005416.2	NP_005407.1	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	78	14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	11	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TACCAAGGTCCCTGAGCCAGG	0.587000													8	244					1.5842e-08	2.23723e-08	0.435327	1	0
FAT4	79633	broad.mit.edu	37	4	126241042	126241042	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:126241042A>G	ENST00000394329.3	+	1	3489	c.3476A>G	c.(3475-3477)cAt>cGt	p.H1159R		NM_024582.4	NP_078858.4	Q6V0I7	FAT4_HUMAN	FAT atypical cadherin 4	1159	Cadherin 11.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(6)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(3)|kidney(10)|large_intestine(93)|liver(3)|lung(120)|ovary(9)|pancreas(2)|prostate(21)|skin(31)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(6)	355						ACAAATACTCATCAGTTTGAC	0.448000													55	122					0	0	0.870114	0	0
SELE	6401	broad.mit.edu	37	1	169697360	169697360	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:169697360G>T	ENST00000333360.7	-	8	1257	c.1118C>A	c.(1117-1119)cCc>cAc	p.P373H	SELE_ENST00000367774.1_Intron|SELE_ENST00000367782.4_Missense_Mutation_p.P373H|SELE_ENST00000367775.1_Intron|SELE_ENST00000367781.4_Intron|C1orf112_ENST00000498289.1_Intron|SELE_ENST00000367776.1_Intron|SELE_ENST00000367779.4_Intron|SELE_ENST00000367780.4_Intron|SELE_ENST00000367777.1_Missense_Mutation_p.P373H	NM_000450.2	NP_000441.2	P16581	LYAM2_HUMAN	selectin E	373	Sushi 4.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			breast(1)|endometrium(1)|kidney(2)|large_intestine(5)|lung(12)|ovary(3)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	32	all_hematologic(923;0.208)					GCCTCGCTCGGGGTTGGACAA	0.483000													5	191					0.0215528	0.02731	0.217242	1	0
BRINP2	57795	broad.mit.edu	37	1	177225063	177225063	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:177225063C>T	ENST00000361539.4	+	3	590	c.278C>T	c.(277-279)gCc>gTc	p.A93V		NM_021165.2	NP_066988.1	Q9C0B6	FAM5B_HUMAN		93						extracellular region		p.A93V(1)		breast(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(21)|liver(1)|lung(41)|ovary(2)|prostate(1)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	94						AGGGAGTTTGCCCGTTGGAAG	0.488000											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	165					0	0	0.150653	0	0
TTN	7273	broad.mit.edu	37	2	179447952	179447952	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:179447952G>A	ENST00000589042.1	-	313	65802	c.65578C>T	c.(65578-65580)Cct>Tct	p.P21860S	TTN-AS1_ENST00000456053.1_RNA|TTN_ENST00000359218.5_Missense_Mutation_p.P12920S|TTN_ENST00000342175.6_Missense_Mutation_p.P12987S|TTN-AS1_ENST00000419746.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.P19292S|TTN-AS1_ENST00000592750.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000592689.1_RNA|TTN-AS1_ENST00000592600.1_RNA|TTN-AS1_ENST00000591332.1_RNA|TTN_ENST00000591111.1_Missense_Mutation_p.P20219S|TTN-AS1_ENST00000590932.1_RNA|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000586831.1_RNA|TTN-AS1_ENST00000586707.1_RNA|TTN-AS1_ENST00000586452.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.P12795S	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	20219	Fibronectin type-III 58.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCCTGGGAGGGACTGGAAAG	0.373000													18	30					0	0	0.639603	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	A	C	rs113451248		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:124857495A>C	ENST00000529051.1	+	8	1632	c.1373A>C	c.(1372-1374)cAc>cCc	p.H458P	CCDC15_ENST00000344762.5_Missense_Mutation_p.H458P			Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				central_nervous_system(1)|cervix(1)|large_intestine(6)|lung(10)|ovary(1)|prostate(3)|skin(1)	23	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													6	600					0	0	0.217242	0	0
HEY2	23493	broad.mit.edu	37	6	126073183	126073183	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:126073183A>C	ENST00000368364.3	+	3	390	c.193A>C	c.(193-195)Aat>Cat	p.N65H	HEY2_ENST00000368365.1_Missense_Mutation_p.N19H	NM_012259.2	NP_036391.1	Q9UBP5	HEY2_HUMAN	hes-related family bHLH transcription factor with YRPW motif 2	65	Helix-loop-helix motif.|Transcriptional repression and interaction with NCOR1 and SIN3A (By similarity).				negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|smooth muscle cell differentiation|transcription, DNA-dependent	transcriptional repressor complex	histone deacetylase binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding			breast(1)|large_intestine(7)|lung(5)|prostate(1)	14				UCEC - Uterine corpus endometrioid carcinoma (4;0.0608)|GBM - Glioblastoma multiforme(226;0.0361)|all cancers(137;0.193)		GGATCGGATAAATAACAGTTT	0.403000													33	109					0	0	0.834066	0	0
LINC01410	103352539	broad.mit.edu	37	9	66459820	66459820	+	RNA	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66459820G>C	ENST00000424345.1	+	0	80																											tttgtccccagtgccttattt	0.353000													4	36					0	0	0.248553	0	0
ETNK2	55224	broad.mit.edu	37	1	204103819	204103819	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:204103819G>C	ENST00000367201.3	-	7	1059	c.1018C>G	c.(1018-1020)Cct>Gct	p.P340A	ETNK2_ENST00000367197.1_Intron|ETNK2_ENST00000367202.4_Intron|ETNK2_ENST00000367199.2_Intron|ETNK2_ENST00000367198.2_Intron			Q9NVF9	EKI2_HUMAN	ethanolamine kinase 2	0							ATP binding|choline kinase activity|ethanolamine kinase activity			breast(1)|central_nervous_system(1)|large_intestine(4)|ovary(1)	7	all_cancers(21;0.032)|Breast(84;0.116)|all_epithelial(62;0.196)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			ACACAGCTAGGACCCTGGAAG	0.562000													26	217					0	0	0.740014	0	0
LTK	4058	broad.mit.edu	37	15	41796728	41796728	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:41796728G>T	ENST00000263800.6	-	18	2327	c.2231C>A	c.(2230-2232)cCt>cAt	p.P744H	LTK_ENST00000453182.2_Missense_Mutation_p.P614H|LTK_ENST00000561619.1_Missense_Mutation_p.P442H|LTK_ENST00000355166.5_Missense_Mutation_p.P683H	NM_002344.5	NP_002335.2	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase	744	Protein kinase.				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			NS(1)|breast(1)|central_nervous_system(1)|kidney(1)|large_intestine(2)|lung(16)|skin(3)|urinary_tract(1)	26		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		GCCCCTAGGAGGGTCCATCCG	0.627000										TSP Lung(18;0.14)			8	29					6.40141e-05	8.5816e-05	0.387290	1	0
HTRA1	5654	broad.mit.edu	37	10	124271531	124271531	+	Silent	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:124271531G>C	ENST00000368984.3	+	8	1352	c.1224G>C	c.(1222-1224)gtG>gtC	p.V408V		NM_002775.4	NP_002766.1	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1	408	PDZ.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity			endometrium(1)|kidney(1)|large_intestine(8)|lung(7)	17		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				TCCCAGACGTGATCTCAGGAG	0.488000													8	97					0	0	0.361761	0	0
SPRR3	6707	broad.mit.edu	37	1	152975729	152975729	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:152975729C>T	ENST00000331860.3	+	3	383	c.233C>T	c.(232-234)cCt>cTt	p.P78L	SPRR3_ENST00000542696.1_Missense_Mutation_p.P78L|SPRR3_ENST00000295367.4_Missense_Mutation_p.P78L	NM_005416.2	NP_005407.1	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	78	14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	11	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACCAAGGTCCCTGAGCCAGGT	0.582000													7	244					0	0	0.387290	0	0
N4BP3	23138	broad.mit.edu	37	5	177548655	177548655	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:177548655C>A	ENST00000274605.5	+	5	1647	c.1288C>A	c.(1288-1290)Cag>Aag	p.Q430K		NM_015111.1	NP_055926.1	O15049	N4BP3_HUMAN	NEDD4 binding protein 3	430						cytoplasmic vesicle membrane				breast(2)|endometrium(3)|kidney(1)|large_intestine(1)|lung(1)|skin(1)	9	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCGCAGCCTGCAGGAGCAGGC	0.667000													11	0					1.05317e-09	1.52216e-09	0.457914	1	0
LINC01410	103352539	broad.mit.edu	37	9	66468984	66468984	+	RNA	SNP	A	A	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66468984A>C	ENST00000424345.1	+	0	2551																											gggaggaaagaaattgagggc	0.418000													4	19					0	0	0.184627	0	0
SLC27A6	28965	broad.mit.edu	37	5	128368846	128368846	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:128368846G>T	ENST00000262462.4	+	10	2741	c.1731G>T	c.(1729-1731)ttG>ttT	p.L577F	SLC27A6_ENST00000506176.1_Missense_Mutation_p.L577F|SLC27A6_ENST00000395266.1_Missense_Mutation_p.L577F			Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid transporter), member 6	577					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding			NS(2)|endometrium(1)|kidney(3)|large_intestine(11)|liver(1)|lung(20)|prostate(1)|skin(4)|stomach(1)	44		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGCATCAGTTGGTGGAAGATG	0.328000													23	12					3.01185e-09	4.31932e-09	0.667858	1	0
TUBGCP6	85378	broad.mit.edu	37	22	50660053	50660053	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:50660053G>C	ENST00000439308.2	-	16	3227	c.2735C>G	c.(2734-2736)aCt>aGt	p.T912S	TUBGCP6_ENST00000491449.1_5'UTR|TUBGCP6_ENST00000248846.5_Missense_Mutation_p.T912S	NM_020461.3	NP_065194.2	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	912					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			breast(4)|central_nervous_system(2)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(4)|lung(13)|ovary(3)|prostate(2)|skin(2)	45		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GACCATGCCAGTCTGCACGGA	0.672000													20	8					0	0	0.654019	0	0
TRIM49C	642612	broad.mit.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	G	A	rs145791878	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:89774252G>A	ENST00000448984.1	+	8	1222	c.893G>A	c.(892-894)aGt>aAt	p.S298N	TRIM49C_ENST00000432771.1_Intron	NM_001195234.1	NP_001182163.1	P0CI26	T49L2_HUMAN	tripartite motif containing 49C	298	B30.2/SPRY.					intracellular	zinc ion binding	p.S298N(4)		endometrium(3)|kidney(1)|lung(4)	8						GAAGCCAACAGTGATATCTTT	0.323000													6	109					0	0	0.217242	0	0
RWDD2A	112611	broad.mit.edu	37	6	83905766	83905766	+	Silent	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:83905766C>T	ENST00000369724.4	+	3	859	c.654C>T	c.(652-654)caC>caT	p.H218H	RWDD2A_ENST00000539997.1_Silent_p.H164H	NM_033411.3	NP_219479.2	Q9UIY3	RWD2A_HUMAN	RWD domain containing 2A	218										cervix(1)|large_intestine(1)|lung(1)|prostate(1)|skin(1)	5		all_cancers(76;2.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00217)		BRCA - Breast invasive adenocarcinoma(397;0.045)		ATTGGAAGCACATTTCCTGTA	0.468000													36	193					0	0	0.834066	0	0
TRAV18	28665	broad.mit.edu	37	14	22471813	22471813	+	RNA	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:22471813G>C	ENST00000390446.3	+	0	341																											GACAGCAGAGGTTTTCAGGCC	0.502000													28	59					0	0	0.750413	0	0
KPRP	448834	broad.mit.edu	37	1	152733685	152733685	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:152733685A>G	ENST00000368773.1	+	2	1679	c.1621A>G	c.(1621-1623)Agt>Ggt	p.S541G	KPRP_ENST00000606109.1_Missense_Mutation_p.S541G	NM_001025231.1	NP_001020402.1	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	541						cytoplasm				NS(1)|breast(1)|endometrium(9)|kidney(1)|large_intestine(10)|lung(21)|ovary(6)|pancreas(1)|prostate(6)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGGGCAAGAGAGTGGTGCTGG	0.582000													5	171					0	0	0.184627	0	0
C1GALT1	56913	broad.mit.edu	37	7	7278574	7278574	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:7278574A>T	ENST00000402468.3	+	2	909	c.909A>T	c.(907-909)ttA>ttT	p.L303F	C1GALT1_ENST00000436587.2_Intron|C1GALT1_ENST00000223122.2_Intron			Q9NS00	C1GLT_HUMAN	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	0					angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding			breast(1)|kidney(1)|lung(3)|prostate(1)|urinary_tract(1)	7				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		AAATTTTATTACTATGTCAAT	0.313000													19	18					0	0	0.557998	0	0
LINC01410	103352539	broad.mit.edu	37	9	66459920	66459920	+	RNA	SNP	G	G	A	rs1845068	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66459920G>A	ENST00000424345.1	+	0	180																											tgggcatgcagcaccatatga	0.363000													3	29					0	0	0.115264	0	0
TAMM41	132001	broad.mit.edu	37	3	11858721	11858721	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:11858721C>T	ENST00000444133.2	-	5	795	c.653G>A	c.(652-654)aGc>aAc	p.S218N	TAMM41_ENST00000455809.1_Missense_Mutation_p.S218N|TAMM41_ENST00000273037.5_Missense_Mutation_p.S218N			Q96BW9	MMP37_HUMAN	TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	218					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane											CTGTAGTATGCTGCCATAGAG	0.408000													4	181					0	0	0.150653	0	0
FGD2	221472	broad.mit.edu	37	6	36995323	36995323	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:36995323T>C	ENST00000274963.8	+	15	1895	c.1724T>C	c.(1723-1725)cTc>cCc	p.L575P		NM_173558.3	NP_775829.2	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	575	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			central_nervous_system(1)|endometrium(6)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(1)	25						GATGACCCCCTCGTGCTCTAT	0.667000													3	55					0	0	0.115264	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378433	31378433	+	Silent	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:31378433C>A	ENST00000297142.3	-	2	772	c.450G>T	c.(448-450)ctG>ctT	p.L150L		NM_022728.2	NP_073565.2	Q96NK8	NDF6_HUMAN	neuronal differentiation 6	150					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(18)|ovary(2)|prostate(2)|upper_aerodigestive_tract(1)	32						TGCCGATTCTCAGAATTTCAG	0.443000													5	255					0.217242	0.262678	0.217242	1	0
HCN3	57657	broad.mit.edu	37	1	155258183	155258183	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:155258183G>T	ENST00000368358.3	+	8	2262	c.2254G>T	c.(2254-2256)Gcc>Tcc	p.A752S	HCN3_ENST00000496230.1_3'UTR	NM_020897.1	NP_065948.1	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic nucleotide-gated potassium channel 3	752	Pro-rich.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			breast(1)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(5)|lung(10)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	27	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TCCAAGGACAGCCCAGCCCCC	0.617000													3	52					0.004672	0.00608676	0.115264	1	0
NAIF1	203245	broad.mit.edu	37	9	130829113	130829113	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:130829113C>A	ENST00000373078.4	-	1	487	c.268G>T	c.(268-270)Gtg>Ttg	p.V90L		NM_197956.3	NP_931045.1	Q69YI7	NAIF1_HUMAN	nuclear apoptosis inducing factor 1	90					apoptosis|induction of apoptosis	nucleus				central_nervous_system(1)|endometrium(3)|large_intestine(2)|lung(8)|upper_aerodigestive_tract(1)|urinary_tract(1)	16						CCACCCTCCACGGCGGCCCGG	0.706000													26	4					7.01153e-11	1.02137e-10	0.717897	1	0
DOCK1	1793	broad.mit.edu	37	10	128850972	128850972	+	Silent	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:128850972C>T	ENST00000280333.6	+	22	2275	c.2166C>T	c.(2164-2166)taC>taT	p.Y722Y		NM_001380.3	NP_001371.1	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	722					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			NS(2)|breast(1)|central_nervous_system(7)|endometrium(13)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(10)|lung(15)|ovary(4)|prostate(3)|stomach(2)|upper_aerodigestive_tract(5)|urinary_tract(1)	72		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		TGAAGAACTACGTGGACGGTG	0.433000													11	248					0	0	0.457914	0	0
AOX1	316	broad.mit.edu	37	2	201515911	201515911	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:201515911G>A	ENST00000374700.2	+	26	3303	c.3062G>A	c.(3061-3063)cGt>cAt	p.R1021H	AOX1_ENST00000485106.1_3'UTR	NM_001159.3	NP_001150.3	Q06278	ADO_HUMAN	aldehyde oxidase 1	1021					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			breast(5)|endometrium(3)|kidney(4)|large_intestine(13)|lung(38)|ovary(5)|pancreas(1)|prostate(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(3)	81					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CTTGGCTCACGTGCTGCTGGT	0.488000													15	134					0	0	0.520397	0	0
PCDHB18P	54660	broad.mit.edu	37	5	140615908	140615908	+	RNA	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:140615908C>T	ENST00000526308.1	+	0	1971					NR_001281.1															endometrium(9)|lung(7)|ovary(1)|urinary_tract(1)	18						CGGTGGACGGCGACTCGGGCC	0.716000													6	6					0	0	0.520397	0	0
TMEM192	201931	broad.mit.edu	37	4	166024213	166024213	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:166024213G>C	ENST00000306480.5	-	2	208	c.63C>G	c.(61-63)gaC>gaG	p.D21E	TMEM192_ENST00000506087.1_Missense_Mutation_p.D17E	NM_001100389.1	NP_001093859.1	Q8IY95	TM192_HUMAN	transmembrane protein 192	21						Golgi apparatus|integral to membrane|late endosome|lysosomal membrane|nucleus				NS(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(2)|prostate(1)|skin(1)	7	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0926)		CCAGAAGTGGGTCGTCTTCAA	0.443000													3	95					0	0	0.115264	0	0
ZNF99	7652	broad.mit.edu	37	19	22941108	22941108	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:22941108T>G	ENST00000397104.3	-	5	1329	c.1330A>C	c.(1330-1332)Aaa>Caa	p.K444Q	ZNF99_ENST00000596209.1_Missense_Mutation_p.K535Q					zinc finger protein 99											NS(1)|breast(1)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(20)|lung(55)|ovary(2)|prostate(10)|skin(5)|stomach(9)|upper_aerodigestive_tract(2)|urinary_tract(3)	124		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTGTAGGGTTTCTTTCCAGTA	0.338000													3	110					0	0	0.115264	0	0
FKBP10	60681	broad.mit.edu	37	17	39975858	39975858	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:39975858G>C	ENST00000321562.4	+	6	1098	c.994G>C	c.(994-996)Ggt>Cgt	p.G332R	FKBP10_ENST00000544340.1_Missense_Mutation_p.G44R	NM_021939.3	NP_068758.3	Q96AY3	FKB10_HUMAN	FK506 binding protein 10, 65 kDa	332	PPIase FKBP-type 3.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			cervix(1)|endometrium(3)|large_intestine(1)|lung(5)|ovary(1)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)	14		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		GGGGCTGCAGGGTGCCTGCAT	0.617000													9	21					0	0	0.307466	0	0
LINC01410	103352539	broad.mit.edu	37	9	66469111	66469111	+	RNA	SNP	T	T	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66469111T>C	ENST00000424345.1	+	0	2678																											CATGGACATATTGAAGAGAAT	0.358000													4	19					0	0	0.150653	0	0
NDUFB6	4712	broad.mit.edu	37	9	32558941	32558941	+	Silent	SNP	A	A	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:32558941A>G	ENST00000379847.3	-	3	386	c.285T>C	c.(283-285)taT>taC	p.Y95Y	NDUFB6_ENST00000350021.2_Intron|TOPORS-AS1_ENST00000425533.1_RNA|TOPORS-AS1_ENST00000458036.1_RNA	NM_002493.4	NP_002484.1	O95139	NDUB6_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa	95					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			endometrium(1)|kidney(2)|large_intestine(1)|lung(3)|urinary_tract(1)	8			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00199)	NADH(DB00157)	CAACTATGCCATATGGTTTTT	0.303000													4	156					0	0	0.150653	0	0
LRP1B	53353	broad.mit.edu	37	2	141819712	141819712	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:141819712T>G	ENST00000389484.3	-	8	2115	c.1144A>C	c.(1144-1146)Aaa>Caa	p.K382Q		NM_018557.2	NP_061027.2	Q9NZR2	LRP1B_HUMAN	low density lipoprotein receptor-related protein 1B	382					protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			NS(5)|autonomic_ganglia(1)|biliary_tract(1)|breast(3)|central_nervous_system(7)|endometrium(25)|haematopoietic_and_lymphoid_tissue(10)|kidney(27)|large_intestine(98)|liver(4)|lung(337)|ovary(15)|pancreas(6)|prostate(11)|skin(30)|stomach(2)|upper_aerodigestive_tract(19)|urinary_tract(5)	606		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAAACCAATTTGTTGACTAGG	0.438000										TSP Lung(27;0.18)			11	126					0	0	0.457914	0	0
RGS22	26166	broad.mit.edu	37	8	100975162	100975162	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:100975162C>G	ENST00000360863.6	-	25	3854	c.3660G>C	c.(3658-3660)gaG>gaC	p.E1220D	RGS22_ENST00000523287.1_Missense_Mutation_p.E1039D|RGS22_ENST00000523437.1_Missense_Mutation_p.E1208D	NM_015668.3	NP_056483.3	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1220					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity		RGS22/SYCP1(2)	breast(3)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(9)|lung(33)|ovary(3)|prostate(2)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	68			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GAAGAATTCTCTCCTGTTCTA	0.313000													3	56					0	0	0.150653	0	0
NABP1	64859	broad.mit.edu	37	2	192546676	192546676	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:192546676G>T	ENST00000425611.2	+	3	318	c.235G>T	c.(235-237)Gca>Tca	p.A79S	NABP1_ENST00000410026.1_5'UTR|NABP1_ENST00000409510.1_5'UTR					nucleic acid binding protein 1																		CTCTAGGTATGCATCCATGTG	0.284000													7	12					0.000274275	0.000362435	0.307466	1	0
MT-ND5	4540	broad.mit.edu	37	MT	12705	12705	+	Silent	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chrM:12705C>T	ENST00000361567.2	+	1	369	c.369C>T	c.(367-369)atC>atT	p.I123I				P03915	NU5M_HUMAN	mitochondrially encoded NADH dehydrogenase 5	123					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			breast(4)|endometrium(29)|kidney(33)|pancreas(1)|prostate(7)	74					NADH(DB00157)	TATCTACTCATTTTCCTAATT	0.373000													7	294					0	0	0.278610	0	0
TET2	54790	broad.mit.edu	37	4	106196707	106196707	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:106196707G>A	ENST00000513237.1	+	11	5900	c.5103G>A	c.(5101-5103)caG>caA	p.Q1701Q	TET2_ENST00000545826.1_3'UTR|TET2_ENST00000380013.4_Silent_p.Q1680Q|TET2_ENST00000540549.1_Silent_p.Q1680Q			Q6N021	TET2_HUMAN	tet methylcytosine dioxygenase 2	1680			M -> I.		cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			NS(1)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1272)|kidney(3)|large_intestine(11)|lung(10)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	1314		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CACTTTACCAGCCAAGGTTTG	0.438000			"""Mis N, F"""		MDS								3	16					0	0	0.115264	0	0
LINC01410	103352539	broad.mit.edu	37	9	66459871	66459871	+	RNA	SNP	T	T	C	rs78414980		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66459871T>C	ENST00000424345.1	+	0	131																											atggtgttgatgctagtagat	0.378000													5	54					0	0	0.217242	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22898632	22898632	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:22898632G>C	ENST00000376573.4	-	2	387	c.159C>G	c.(157-159)agC>agG	p.S53R	PIP4K2A_ENST00000422321.1_5'UTR|PIP4K2A_ENST00000545335.1_5'UTR	NM_005028.4	NP_005019.2	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	53	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			endometrium(4)|kidney(13)|large_intestine(4)|lung(6)|ovary(1)|skin(1)	29						TTTGAACATGGCTCAGTTCAT	0.353000													37	81					0	0	0.819951	0	0
RBP3	5949	broad.mit.edu	37	10	48389204	48389204	+	Silent	SNP	C	C	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:48389204C>G	ENST00000224600.4	-	1	1787	c.1674G>C	c.(1672-1674)tcG>tcC	p.S558S		NM_002900.2	NP_002891.1	P10745	RET3_HUMAN	retinol binding protein 3, interstitial	558	4 X approximate tandem repeats.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			central_nervous_system(3)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(8)|lung(30)|ovary(1)|prostate(7)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	59					Vitamin A(DB00162)	CCCAGCCCAGCGACTGCATAA	0.682000													7	13					0	0	0.361761	0	0
ZFHX3	463	broad.mit.edu	37	16	72991911	72991911	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:72991911G>A	ENST00000268489.5	-	2	2806	c.2134C>T	c.(2134-2136)Cgg>Tgg	p.R712W	ZFHX3_ENST00000397992.5_Intron	NM_006885.3	NP_008816.3	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3	712					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			NS(3)|breast(7)|cervix(2)|endometrium(18)|haematopoietic_and_lymphoid_tissue(5)|kidney(8)|large_intestine(22)|liver(1)|lung(46)|ovary(5)|pancreas(1)|prostate(15)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(11)	153		Ovarian(137;0.13)				CGTGCCAGCCGGGGGTGGGGC	0.577000													4	53					0	0	0.184627	0	0
NDC80	10403	broad.mit.edu	37	18	2616497	2616497	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:2616497A>C	ENST00000261597.4	+	17	2035	c.1853A>C	c.(1852-1854)gAt>gCt	p.D618A		NM_006101.2	NP_006092.1	O14777	NDC80_HUMAN	NDC80 kinetochore complex component	618	Interaction with NEK2 and ZWINT.|Interaction with the C-terminus of CDCA1 and the SPBC24-SPBC25 subcomplex.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			NS(1)|biliary_tract(2)|breast(1)|endometrium(1)|kidney(3)|large_intestine(2)|lung(6)|ovary(2)|prostate(2)|urinary_tract(2)	22						ATGTCAGAAGATCTCTCGGAA	0.289000													3	72					0	0	0.115264	0	0
ITPR2	3709	broad.mit.edu	37	12	26877673	26877673	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:26877673G>C	ENST00000381340.3	-	4	698	c.282C>G	c.(280-282)caC>caG	p.H94Q	ITPR2_ENST00000242737.5_Missense_Mutation_p.H94Q	NM_002223.2	NP_002214.2	Q14571	ITPR2_HUMAN	inositol 1,4,5-trisphosphate receptor, type 2	94					activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity		ETV6/ITPR2(2)	biliary_tract(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(16)|large_intestine(20)|liver(1)|lung(51)|ovary(5)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(5)|urinary_tract(3)	125	Colorectal(261;0.0847)					GTTCTGCAGCGTGCTATAAGA	0.299000													4	22					0	0	0.184627	0	0
TLN1	7094	broad.mit.edu	37	9	35711745	35711745	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:35711745C>G	ENST00000314888.9	-	29	4079	c.3726G>C	c.(3724-3726)ttG>ttC	p.L1242F	TLN1_ENST00000540444.1_Missense_Mutation_p.L1242F	NM_006289.3	NP_006280.3	Q9Y490	TLN1_HUMAN	talin 1	1242					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			NS(2)|breast(8)|central_nervous_system(2)|endometrium(10)|kidney(5)|large_intestine(9)|lung(32)|ovary(3)|prostate(5)|skin(3)|upper_aerodigestive_tract(6)	85	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CAGCTTCATTCAACCGGCTCT	0.577000													17	125					0	0	0.681144	0	0
COL16A1	1307	broad.mit.edu	37	1	32162567	32162567	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:32162567G>A	ENST00000373672.3	-	8	1377	c.861C>T	c.(859-861)agC>agT	p.S287S	COL16A1_ENST00000373668.3_Silent_p.S287S|COL16A1_ENST00000271069.6_Silent_p.S287S	NM_001856.3	NP_001847.3	Q07092	COGA1_HUMAN	collagen, type XVI, alpha 1	287	Nonhelical region 10 (NC10).				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			breast(4)|central_nervous_system(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(7)|lung(15)|ovary(8)|prostate(4)	48		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CACCCACCTCGCTGTTTTGAG	0.607000													14	49					0	0	0.624587	0	0
KLHL32	114792	broad.mit.edu	37	6	97561863	97561863	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:97561863C>A	ENST00000369261.4	+	7	1195	c.832C>A	c.(832-834)Cag>Aag	p.Q278K	KLHL32_ENST00000536676.1_Missense_Mutation_p.Q242K|KLHL32_ENST00000544166.1_Intron|KLHL32_ENST00000539200.1_Missense_Mutation_p.Q209K	NM_052904.3	NP_443136.2	Q96NJ5	KLH32_HUMAN	kelch-like family member 32	278										breast(2)|endometrium(3)|kidney(4)|large_intestine(9)|lung(13)|ovary(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)	38		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		GCCTGTCTGGCAGACTCGCAG	0.537000													4	126					0.150653	0.183361	0.150653	1	0
LINC01410	103352539	broad.mit.edu	37	9	66459884	66459884	+	RNA	SNP	T	T	G	rs139166660	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66459884T>G	ENST00000424345.1	+	0	144																											tagtagatgttcttcagtgtc	0.368000													5	54					0	0	0.248553	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767846	77767846	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:77767846G>A	ENST00000521891.2	+	10	9137	c.8689G>A	c.(8689-8691)Gac>Aac	p.D2897N	ZFHX4_ENST00000455469.2_Missense_Mutation_p.D2852N|ZFHX4_ENST00000518282.1_Missense_Mutation_p.D2871N|ZFHX4_ENST00000050961.6_Missense_Mutation_p.D2852N	NM_024721.4	NP_078997.4	Q86UP3	ZFHX4_HUMAN	zinc finger homeobox 4	2852						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.D2881N(1)		NS(3)|breast(11)|central_nervous_system(1)|endometrium(36)|haematopoietic_and_lymphoid_tissue(2)|kidney(15)|large_intestine(66)|liver(2)|lung(245)|ovary(11)|pancreas(3)|prostate(11)|skin(7)|upper_aerodigestive_tract(13)|urinary_tract(6)	432			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGACAACGCCGACCGCAGCGA	0.498000										HNSCC(33;0.089)			52	65					0	0	0.870114	0	0
BMS1P20	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:22664606A>G	ENST00000426066.1	+	0	787					NR_027293.1																						GTCTTCATGCAAACTTGGTAT	0.398000													3	63					0	0	0.115264	0	0
ZNF430	80264	broad.mit.edu	37	19	21240398	21240398	+	Silent	SNP	C	C	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:21240398C>G	ENST00000261560.5	+	5	1465	c.1284C>G	c.(1282-1284)ccC>ccG	p.P428P		NM_001172671.1|NM_025189.3	NP_001166142.1|NP_079465.3	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	428					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(8)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	23						GAGAGAAACCCTACAAATGTG	0.363000													15	62					0	0	0.500413	0	0
OTOF	9381	broad.mit.edu	37	2	26695491	26695491	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:26695491G>A	ENST00000272371.2	-	30	3886	c.3760C>T	c.(3760-3762)Ctg>Ttg	p.L1254L	OTOF_ENST00000339598.3_Intron|OTOF_ENST00000338581.6_Intron|OTOF_ENST00000403946.3_Silent_p.L1254L|OTOF_ENST00000402415.3_Silent_p.L564L	NM_194248.2	NP_919224.1	Q9HC10	OTOF_HUMAN	otoferlin	1254					cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|breast(9)|central_nervous_system(4)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(14)|lung(35)|ovary(8)|pancreas(1)|prostate(5)|skin(5)|stomach(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	106	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCATTGCACAGCACACGGCAG	0.577000													3	10					0	0	0.115264	0	0
RILPL2	196383	broad.mit.edu	37	12	123900453	123900453	+	Silent	SNP	C	C	T	rs143775343		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:123900453C>T	ENST00000280571.8	-	4	917	c.621G>A	c.(619-621)tcG>tcA	p.S207S		NM_145058.1	NP_659495.1	Q969X0	RIPL2_HUMAN	Rab interacting lysosomal protein-like 2	207						cytosol|plasma membrane	identical protein binding			endometrium(1)|large_intestine(2)|lung(2)|skin(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000546)|Epithelial(86;0.00179)|all cancers(50;0.0168)		TCTGTTTCCCCGATCGAAAAA	0.498000													6	565					0	0	0.217242	0	0
LARP7	51574	broad.mit.edu	37	4	113578472	113578472	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:113578472G>T	ENST00000509061.1	+	15	2062	c.1759G>T	c.(1759-1761)Gaa>Taa	p.E587*	LARP7_ENST00000503898.1_3'UTR|LARP7_ENST00000344442.5_Nonsense_Mutation_p.E580*|LARP7_ENST00000324052.6_Nonsense_Mutation_p.E580*	NM_001267039.1	NP_001253968.1	Q4G0J3	LARP7_HUMAN	La ribonucleoprotein domain family, member 7	580					RNA processing	nucleoplasm|ribonucleoprotein complex	nucleotide binding|RNA binding			endometrium(2)|large_intestine(2)|lung(8)|ovary(4)|skin(1)	17		Ovarian(17;0.0443)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		AAGATTTTCTGAATATGATTG	0.299000													12	26					3.27435e-08	4.58905e-08	0.457914	1	0
MT-ND1	4535	broad.mit.edu	37	MT	3980	3980	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chrM:3980T>C	ENST00000361390.2	+	1	674	c.674T>C	c.(673-675)aTa>aCa	p.225_225insT						mitochondrially encoded NADH dehydrogenase 1											breast(1)|endometrium(13)|kidney(17)|lung(2)|prostate(1)	34						CCTATTCTTCATAGCCGAATA	0.483000													4	329					0	0	0.217242	0	0
ADAM22	53616	broad.mit.edu	37	7	87792441	87792441	+	Silent	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:87792441C>T	ENST00000398204.4	+	23	2345	c.2022C>T	c.(2020-2022)ttC>ttT	p.F674F	ADAM22_ENST00000398201.4_Silent_p.F674F|ADAM22_ENST00000398209.3_Silent_p.F674F|ADAM22_ENST00000265727.7_Silent_p.F674F|ADAM22_ENST00000315984.7_Silent_p.F674F	NM_016351.4|NM_021723.3	NP_057435.2|NP_068369.1	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22	674	Cys-rich.				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			endometrium(7)|kidney(4)|large_intestine(7)|liver(2)|lung(20)|ovary(6)|prostate(4)|skin(3)	53	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TGGCTTCTTTCAACTTTAGTA	0.413000													25	74					0	0	0.667858	0	0
SZT2	23334	broad.mit.edu	37	1	43881758	43881758	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:43881758C>A	ENST00000562955.1	+	6	758	c.758C>A	c.(757-759)tCg>tAg	p.S253*		NM_015284.3	NP_056099.3	Q5T011	SZT2_HUMAN	seizure threshold 2 homolog (mouse)	253						peroxisome				NS(2)|breast(9)|central_nervous_system(1)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(19)|lung(39)|ovary(4)|pancreas(3)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	113						TTACTACCCTCGAACTCTAGT	0.542000													18	76					1.56452e-12	2.33417e-12	0.557998	1	0
MC2R	4158	broad.mit.edu	37	18	13884822	13884822	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:13884822C>A	ENST00000327606.3	-	2	876	c.696G>T	c.(694-696)tgG>tgT	p.W232C		NM_000529.2	NP_000520.1	Q01718	ACTHR_HUMAN	melanocortin 2 receptor (adrenocorticotropic hormone)	232					G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(10)|lung(8)|ovary(4)|pancreas(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	30					Corticotropin(DB01285)|Cosyntropin(DB01284)	CAAAGGGGGCCCAGCAGAAGA	0.552000													7	76					8.12818e-05	0.000108181	0.248553	1	0
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:14513764C>T	ENST00000358970.5	-	10	1429	c.1430G>A	c.(1429-1431)cGg>cAg	p.R477Q		NM_001137671.1	NP_001131143.1	B2RU33	POTEC_HUMAN	POTE ankyrin domain family, member C	477								p.R477Q(12)		NS(2)|breast(1)|endometrium(9)|kidney(13)|lung(14)|prostate(3)|skin(6)|soft_tissue(1)|urinary_tract(3)	52						AAGTTGTTTCCGGGTATCATT	0.358000													5	74					0	0	0.217242	0	0
TMEM176B	28959	broad.mit.edu	37	7	150488684	150488684	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:150488684G>T	ENST00000447204.2	-	7	1120	c.748C>A	c.(748-750)Ctg>Atg	p.L250M	TMEM176B_ENST00000450753.2_Missense_Mutation_p.L213M|TMEM176B_ENST00000492607.1_Missense_Mutation_p.L250M|TMEM176B_ENST00000326442.5_Missense_Mutation_p.L250M|TMEM176B_ENST00000429904.2_Missense_Mutation_p.L250M|TMEM176B_ENST00000434545.1_Missense_Mutation_p.L250M	NM_014020.3	NP_054739.3	Q3YBM2	T176B_HUMAN	transmembrane protein 176B	250					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				cervix(1)|large_intestine(4)|lung(10)|ovary(1)|skin(3)	19			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCTCCCCCAGTAGCCTCTTC	0.512000													5	111					0.105934	0.132417	0.435327	1	0
FAM129C	199786	broad.mit.edu	37	19	17660252	17660252	+	Splice_Site	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:17660252G>T	ENST00000335393.4	+	15	1897		c.e15-1		FAM129C_ENST00000352727.3_Splice_Site|FAM129C_ENST00000332386.5_Splice_Site|FAM129C_ENST00000449408.2_Splice_Site|FAM129C_ENST00000601861.1_Splice_Site|FAM129C_ENST00000600871.1_Intron|FAM129C_ENST00000599164.1_Splice_Site|FAM129C_ENST00000595684.1_Splice_Site|FAM129C_ENST00000599124.1_Splice_Site	NM_173544.4	NP_775815.2	Q86XR2	NIBL2_HUMAN	family with sequence similarity 129, member C											autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(8)|liver(2)|lung(14)|ovary(1)|skin(3)|stomach(1)	33						TCTCATTTCAGAATTGAAAAA	0.517000													7	518					0.307466	0.366976	0.307466	1	0
MT-ND5	4540	broad.mit.edu	37	MT	12684	12684	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chrM:12684G>A	ENST00000361567.2	+	1	348	c.348G>A	c.(346-348)caG>caA	p.Q116Q				P03915	NU5M_HUMAN	mitochondrially encoded NADH dehydrogenase 5	116					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			breast(4)|endometrium(29)|kidney(33)|pancreas(1)|prostate(7)	74					NADH(DB00157)	AACATTAATCAGTTCTTCAAA	0.368000													5	269					0	0	0.217242	0	0
DYRK2	8445	broad.mit.edu	37	12	68052278	68052278	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:68052278C>T	ENST00000344096.3	+	3	2004	c.1591C>T	c.(1591-1593)Cgg>Tgg	p.R531W	DYRK2_ENST00000393555.3_Missense_Mutation_p.R458W	NM_006482.2	NP_006473.2	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	531	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			breast(2)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(7)|lung(6)|ovary(2)|prostate(2)|skin(1)|urinary_tract(1)	30			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		CCAGGCTTTGCGGCACCCCTG	0.547000													4	290					0	0	0.150653	0	0
PSMD9	5715	broad.mit.edu	37	12	122337663	122337663	+	Missense_Mutation	SNP	G	G	A	rs145938110	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:122337663G>A	ENST00000544724.1	+	1	2487	c.98G>A	c.(97-99)cGc>cAc	p.R33H	PSMD9_ENST00000340175.5_Missense_Mutation_p.R122H|RP11-87C12.2_ENST00000542602.1_Intron|PSMD9_ENST00000541212.1_Missense_Mutation_p.R122H|PSMD9_ENST00000261817.2_Missense_Mutation_p.R122H			O00233	PSMD9_HUMAN	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	122					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of insulin secretion|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of insulin secretion|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	nucleus|proteasome regulatory particle	bHLH transcription factor binding|transcription coactivator activity			endometrium(1)|large_intestine(1)|lung(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000117)|Epithelial(86;0.000415)|BRCA - Breast invasive adenocarcinoma(302;0.231)		GCCATGAGCCGCAAACTGGGT	0.652000													3	44					0	0	0.115264	0	0
A1CF	29974	broad.mit.edu	37	10	52566515	52566515	+	Silent	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:52566515G>T	ENST00000395489.2	-	15	2134	c.1738C>A	c.(1738-1740)Cga>Aga	p.R580R	A1CF_ENST00000373995.3_Silent_p.R587R|A1CF_ENST00000395495.1_Silent_p.R532R|A1CF_ENST00000373993.1_Silent_p.R587R|A1CF_ENST00000373997.3_Silent_p.R579R|A1CF_ENST00000282641.2_Silent_p.R587R|A1CF_ENST00000374001.1_Silent_p.R579R|ASAH2B_ENST00000483649.1_Intron	NM_001198819.1	NP_001185748.1	Q9NQ94	A1CF_HUMAN	APOBEC1 complementation factor	587					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			NS(1)|breast(1)|central_nervous_system(1)|kidney(3)|large_intestine(4)|lung(14)|prostate(2)|skin(3)	29						CCATCCCCTCGGGCAGTCACT	0.413000													3	80					0.115264	0.143113	0.115264	1	0
AQR	9716	broad.mit.edu	37	15	35234266	35234266	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:35234266G>C	ENST00000156471.5	-	7	712	c.487C>G	c.(487-489)Cga>Gga	p.R163G		NM_014691.2	NP_055506.1	O60306	AQR_HUMAN	aquarius intron-binding spliceosomal factor	163						catalytic step 2 spliceosome	RNA binding			breast(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(10)|lung(18)|ovary(1)|prostate(6)|skin(4)|upper_aerodigestive_tract(2)	57		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		ACTTGACTTCGTATCAAGTCT	0.363000													5	60					0	0	0.217242	0	0
ARRB1	408	broad.mit.edu	37	11	74994399	74994399	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:74994399G>A	ENST00000420843.2	-	5	383	c.286C>T	c.(286-288)Ccc>Tcc	p.P96S	ARRB1_ENST00000393505.4_Missense_Mutation_p.P96S|ARRB1_ENST00000360025.3_Missense_Mutation_p.P96S	NM_004041.4	NP_004032.2	P49407	ARRB1_HUMAN	arrestin, beta 1	96	Interaction with SRC (By similarity).				G-protein coupled receptor internalization|histone H4 acetylation|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|positive regulation of histone acetylation|positive regulation of Rho protein signal transduction|positive regulation of transcription from RNA polymerase II promoter|post-Golgi vesicle-mediated transport|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|signal transduction|stress fiber assembly|transcription from RNA polymerase II promoter	chromatin|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane fraction|nucleus|plasma membrane|pseudopodium|soluble fraction	angiotensin receptor binding|enzyme inhibitor activity|GTPase activator activity|insulin-like growth factor receptor binding|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding			breast(4)|large_intestine(2)|lung(4)|prostate(1)	11						CGCGTCAGGGGCTTCTTGTCC	0.622000													9	34					0	0	0.361761	0	0
CAAP1	79886	broad.mit.edu	37	9	26886165	26886165	+	Nonsense_Mutation	SNP	T	T	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:26886165T>A	ENST00000333916.5	-	3	614	c.526A>T	c.(526-528)Aaa>Taa	p.K176*	CAAP1_ENST00000495958.1_Intron|CAAP1_ENST00000535437.1_Nonsense_Mutation_p.K31*|CAAP1_ENST00000520187.1_Intron	NM_001167575.1|NM_024828.3	NP_001161047.1|NP_079104.3	Q9H8G2	CI082_HUMAN	caspase activity and apoptosis inhibitor 1	176																	CATAGTTTTTTAATTTCTTCT	0.289000													5	9					0	0	0.217242	0	0
MYO9B	4650	broad.mit.edu	37	19	17314016	17314016	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:17314016G>A	ENST00000595618.1	+	30	5091	c.4939G>A	c.(4939-4941)Gag>Aag	p.E1647K	MYO9B_ENST00000594824.1_Missense_Mutation_p.E1647K|MYO9B_ENST00000397274.2_Missense_Mutation_p.E1647K	NM_001130065.1|NM_004145.3	NP_001123537.1|NP_004136.2	Q13459	MYO9B_HUMAN	myosin IXB	1647	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(3)|endometrium(9)|kidney(2)|large_intestine(1)|lung(19)|soft_tissue(1)|urinary_tract(4)	39						GCAGTCGTGCGAGCAGTGCCT	0.637000													3	16					0	0	0.248553	0	0
CACNG3	10368	broad.mit.edu	37	16	24372930	24372930	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:24372930C>T	ENST00000005284.3	+	4	1896	c.694C>T	c.(694-696)Cgg>Tgg	p.R232W		NM_006539.3	NP_006530.1	O60359	CCG3_HUMAN	calcium channel, voltage-dependent, gamma subunit 3	232					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity			NS(2)|breast(1)|endometrium(4)|kidney(2)|large_intestine(10)|lung(13)|ovary(2)|prostate(4)|skin(2)	40				GBM - Glioblastoma multiforme(48;0.0809)		GTATCGATTCCGGAGGCGGTC	0.527000													7	189					0	0	0.307466	0	0
PCNT	5116	broad.mit.edu	37	21	47851553	47851553	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr21:47851553G>T	ENST00000359568.5	+	38	8282	c.8175G>T	c.(8173-8175)gaG>gaT	p.E2725D	PCNT_ENST00000480896.1_3'UTR	NM_006031.5	NP_006022.3	O95613	PCNT_HUMAN	pericentrin	2725					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			NS(1)|breast(5)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(15)|liver(2)|lung(41)|ovary(5)|pancreas(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(2)	104	Breast(49;0.112)					TGCGTATCGAGCACTCACGCT	0.617000													31	5					3.03874e-20	4.57046e-20	0.779181	1	0
PREP	5550	broad.mit.edu	37	6	105825361	105825361	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:105825361G>A	ENST00000369110.3	-	3	346	c.154C>T	c.(154-156)Cca>Tca	p.P52S		NM_002726.4	NP_002717.3	P48147	PPCE_HUMAN	prolyl endopeptidase	52					proteolysis		serine-type endopeptidase activity			breast(1)|endometrium(2)|large_intestine(7)|lung(12)|ovary(3)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	29		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	TCAAGAAATGGCACAGTAATC	0.363000													4	113					0	0	0.150653	0	0
RET	5979	broad.mit.edu	37	10	43601824	43601824	+	Splice_Site	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:43601824G>A	ENST00000355710.3	+	5	1100	c.867_splice	c.e5-1	p.D290_splice	RET_ENST00000340058.5_Splice_Site_p.D290_splice	NM_020975.4	NP_066124.1	P07949	RET_HUMAN	ret proto-oncogene	290					homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity		CCDC6/RET(4)|KIF5B/RET(79)	NS(2)|adrenal_gland(26)|breast(5)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(7)|kidney(2)|large_intestine(14)|lung(27)|ovary(5)|prostate(3)|skin(1)|thyroid(504)|upper_aerodigestive_tract(1)|urinary_tract(1)	607		Ovarian(717;0.0423)			Sunitinib(DB01268)	CATCCTGCAGGACACCGTGGT	0.632000		1	"""T, Mis, N, F"""	"""H4, PRKAR1A, NCOA4, PCM1, GOLGA5, TRIM33, KTN1, TRIM27, HOOK3, KIF5B, CCDC6"""	"""medullary thyroid,  papillary thyroid, pheochromocytoma, NSCLC"""	"""medullary thyroid,  papillary thyroid, pheochromocytoma"""	Hirschsprung disease		Multiple Endocrine Neoplasia, type 2B;Multiple Endocrine Neoplasia, type 2A;Familial Medullary Thyroid Carcinoma				10	24					0	0	0.387290	0	0
ENPP5	59084	broad.mit.edu	37	6	46129128	46129128	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:46129128G>T	ENST00000371383.2	-	5	1629	c.1369C>A	c.(1369-1371)Cac>Aac	p.H457N	ENPP5_ENST00000230565.3_Missense_Mutation_p.H457N			Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)	457						extracellular region|integral to membrane	hydrolase activity			endometrium(3)|kidney(1)|large_intestine(3)|lung(4)|upper_aerodigestive_tract(1)	12						ATTTGACTGTGAATTAAATGC	0.348000													4	121					1.23904e-05	1.69794e-05	0.184627	1	0
GBA3	57733	broad.mit.edu	37	4	22749503	22749503	+	RNA	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:22749503G>C	ENST00000503442.1	+	0	377				GBA3_ENST00000511446.1_RNA|GBA3_ENST00000508166.1_RNA	NM_001128432.2	NP_001121904.1	Q9H227	GBA3_HUMAN	glucosidase, beta, acid 3 (gene/pseudogene)						glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity			breast(1)|kidney(2)|large_intestine(4)|lung(20)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	33						AGAATTCACTGAAGAAGAGAA	0.398000													22	43					0	0	0.639603	0	0
GAB2	9846	broad.mit.edu	37	11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:77937657C>G	ENST00000361507.4	-	4	1146	c.1061G>C	c.(1060-1062)cGc>cCc	p.R354P	GAB2_ENST00000340149.2_Missense_Mutation_p.R316P	NM_080491.2	NP_536739.1	Q9UQC2	GAB2_HUMAN	GRB2-associated binding protein 2	354					osteoclast differentiation|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mast cell degranulation	cytosol|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|transmembrane receptor protein tyrosine kinase adaptor activity		INTS4/GAB2(2)	NS(1)|breast(1)|endometrium(5)|kidney(1)|large_intestine(1)|lung(8)|ovary(5)|skin(1)|upper_aerodigestive_tract(1)	24	all_cancers(14;3.31e-18)|all_epithelial(13;5.3e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.58e-23)			CTTGGGGGGGCGGGGTGGGGG	0.582000													4	50					0	0	0.278610	0	0
ZNF845	91664	broad.mit.edu	37	19	53855284	53855284	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:53855284G>A	ENST00000458035.1	+	4	1473	c.1356G>A	c.(1354-1356)tcG>tcA	p.S452S	ZNF845_ENST00000595091.1_Silent_p.S452S	NM_138374.1	NP_612383.1	Q96IR2	ZN845_HUMAN	zinc finger protein 845	452					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.S452S(2)		endometrium(2)|kidney(10)|lung(7)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(2)	26						GTTTCAAATCGAACCTTGAAA	0.398000													4	118					0	0	0.150653	0	0
MIR296	407022	broad.mit.edu	37	20	57392733	57392733	+	RNA	SNP	C	C	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:57392733C>G	ENST00000385215.1	-	0	16					NR_029844.1																						TGAGGGGGGGCCCTCTGGAAG	0.592000													3	32					0	0	0.115264	0	0
HTR1B	3351	broad.mit.edu	37	6	78172846	78172846	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:78172846G>A	ENST00000369947.2	-	1	644	c.275C>T	c.(274-276)gCg>gTg	p.A92V		NM_000863.1	NP_000854.1	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	92					G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity			NS(1)|breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(9)|prostate(2)|upper_aerodigestive_tract(2)	25		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	GTCGGTGACCGCCAGAGAGGC	0.597000													39	61					0	0	0.870114	0	0
ESCO1	114799	broad.mit.edu	37	18	19153748	19153748	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:19153748G>C	ENST00000269214.5	-	4	1994	c.1057C>G	c.(1057-1059)Cag>Gag	p.Q353E		NM_052911.2	NP_443143.2	Q5FWF5	ESCO1_HUMAN	establishment of sister chromatid cohesion N-acetyltransferase 1	353					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			breast(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(10)|prostate(3)|upper_aerodigestive_tract(1)	35						GTTTCCTTCTGATGAAGTATT	0.348000													30	92					0	0	0.788014	0	0
ZNF845	91664	broad.mit.edu	37	19	53856730	53856730	+	Silent	SNP	G	G	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:53856730G>A	ENST00000458035.1	+	4	2919	c.2802G>A	c.(2800-2802)aaG>aaA	p.K934K	ZNF845_ENST00000595091.1_Silent_p.K934K	NM_138374.1	NP_612383.1	Q96IR2	ZN845_HUMAN	zinc finger protein 845	934					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.K934K(3)		endometrium(2)|kidney(10)|lung(7)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(2)	26						TAATTCATAAGACAATTCATA	0.368000													3	79					0	0	0.150653	0	0
FOXJ3	22887	broad.mit.edu	37	1	42656996	42656997	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:42656996_42656997insG	ENST00000372572.1	-	11	1639_1640	c.1328_1329insC	c.(1327-1329)ccafs	p.P443fs	FOXJ3_ENST00000361776.1_Frame_Shift_Ins_p.P409fs|FOXJ3_ENST00000372573.1_Frame_Shift_Ins_p.P443fs|FOXJ3_ENST00000361346.1_Frame_Shift_Ins_p.P443fs|FOXJ3_ENST00000545068.1_Frame_Shift_Ins_p.P443fs	NM_001198851.1	NP_001185780.1	Q9UPW0	FOXJ3_HUMAN	forkhead box J3	443					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			NS(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(3)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	18	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ATACCTGTTGTGGGGGTGGGGG	0.480													7	218	---	---	---	---					
GNG12-AS1	100289178	broad.mit.edu	37	1	68550895	68550896	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:68550895_68550896insA	ENST00000420587.1	+	0	325				GNG12-AS1_ENST00000413628.1_RNA	NR_040077.1		Q6ZVV5	Q6ZVV5_HUMAN																			acaaatgaaacaaaaacctact	0.366													2	4	---	---	---	---					
ZRANB2-AS2	100852410	broad.mit.edu	37	1	71581641	71581641	+	RNA	DEL	A	A	-	rs78212186		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:71581641delA	ENST00000455406.1	+	0	131				ZRANB2-AS2_ENST00000596952.1_RNA|ZRANB2-AS2_ENST00000415780.1_RNA	NR_046217.1																						tctaaaaaagaaaaaaaaaaa	0.373													4	6	---	---	---	---					
LOC101927412	101927412	broad.mit.edu	37	1	81015560	81015561	+	RNA	DEL	AA	AA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:81015560_81015561delAA	ENST00000443104.1	+	0	236				RP11-115A15.1_ENST00000437080.1_lincRNA																							ttctaattagaaaaaaaaaaaa	0.317													2	4	---	---	---	---					
PKN2-AS1	101927891	broad.mit.edu	37	1	89148200	89148200	+	RNA	DEL	T	T	-	rs34315315		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:89148200delT	ENST00000458097.1	-	0	41																											GATAAGTACCTTTTTTTTTTT	0.438													3	3	---	---	---	---					
RBMXL1	494115	broad.mit.edu	37	1	89448604	89448605	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:89448604_89448605insGG	ENST00000399794.2	-	3	1620_1621	c.905_906insCC	c.(904-906)ctcfs	p.L302fs	CCBL2_ENST00000260508.4_Intron|CCBL2_ENST00000370485.2_Intron|CCBL2_ENST00000370491.3_Intron|RBMXL1_ENST00000321792.5_Frame_Shift_Ins_p.L302fs|CCBL2_ENST00000446900.2_Intron	NM_001162536.2	NP_001156008.1	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	302	Ser-rich.						nucleotide binding|RNA binding										CACCATAAGATGGCGGGGGCCC	0.475													8	347	---	---	---	---					
FLJ27354	400761	broad.mit.edu	37	1	90089281	90089281	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:90089281delA	ENST00000443562.1	-	0	176																											actccatctcaaaaaaaaaag	0.458													2	4	---	---	---	---					
LRRC8C	84230	broad.mit.edu	37	1	90179646	90179647	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:90179646_90179647insC	ENST00000370454.4	+	3	1772_1773	c.1517_1518insC	c.(1516-1518)cccfs	p.P506fs	RP11-302M6.4_ENST00000370453.5_Intron|LRRC8C_ENST00000479252.1_Intron	NM_032270.4	NP_115646.2	Q8TDW0	LRC8C_HUMAN	leucine rich repeat containing 8 family, member C	506						endoplasmic reticulum membrane|integral to membrane				breast(1)|central_nervous_system(1)|large_intestine(5)|lung(10)|ovary(3)|pancreas(1)|prostate(1)|skin(5)|urinary_tract(1)	28		all_lung(203;0.126)		all cancers(265;0.00756)|Epithelial(280;0.0313)		ATGAGGGAACTCCCCCCCTGGA	0.500													9	100	---	---	---	---					
RP5-827O9.1	0	broad.mit.edu	37	1	90981981	90981982	+	RNA	DEL	AC	AC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:90981981_90981982delAC	ENST00000435832.1	-	0	105																											acacacacatacacacacacac	0.460													3	5	---	---	---	---					
RP11-148B18.4	0	broad.mit.edu	37	1	94784525	94784525	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:94784525delA	ENST00000414039.1	-	0	163																											CACCTGATGTAACTGTAATAG	0.358													2	4	---	---	---	---					
LOC729987	729987	broad.mit.edu	37	1	98714492	98714493	+	RNA	DEL	AC	AC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:98714492_98714493delAC	ENST00000418344.1	+	0	64					NR_046088.1																						aaaaactgtaacacacacacac	0.386													2	4	---	---	---	---					
RP11-417J8.2	0	broad.mit.edu	37	1	142574780	142574780	+	RNA	DEL	A	A	-	rs150032502		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:142574780delA	ENST00000415979.2	-	0	215																											actctgtctcaaaaaaaaaaa	0.418													3	6	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142621835	142621835	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:142621835delG	ENST00000369381.2	-	0	5311				RP11-417J8.3_ENST00000426408.1_lincRNA																							GTCAAATTTAGGGGGACTGTA	0.393													4	8	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142638708	142638708	+	RNA	DEL	T	T	-	rs143081250		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:142638708delT	ENST00000369381.2	-	0	2507				RP11-417J8.3_ENST00000426408.1_lincRNA																							ttttcttttcttttttttttt	0.303													3	6	---	---	---	---					
RP11-782C8.2	0	broad.mit.edu	37	1	143146075	143146076	+	RNA	INS	-	-	T	rs151057799		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:143146075_143146076insT	ENST00000412204.2	-	0	2503				RP11-782C8.1_ENST00000438000.1_lincRNA																							aagactctgtctcaaaaaaaaa	0.411													4	8	---	---	---	---					
LOC101927648	101927648	broad.mit.edu	37	1	143461950	143461951	+	RNA	INS	-	-	C	rs149707404		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:143461950_143461951insC	ENST00000423249.1	-	0	59																											caaggacagttcccccccagaa	0.431													2	4	---	---	---	---					
RP11-435B5.6	0	broad.mit.edu	37	1	143498898	143498898	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:143498898delA	ENST00000429884.1	+	0	167																											tttggaatgcaaaaatctaca	0.428													2	4	---	---	---	---					
PIAS3	10401	broad.mit.edu	37	1	145585532	145585533	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:145585532_145585533insG	ENST00000393045.2	+	14	1887_1888	c.1797_1798insG	c.(1795-1800)ccggggfs	p.PG599fs	PIAS3_ENST00000369298.1_Frame_Shift_Ins_p.PG564fs	NM_006099.3	NP_006090.2	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	599					positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			cervix(1)|endometrium(4)|kidney(1)|large_intestine(5)|lung(14)|ovary(1)|prostate(2)	28	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTGTGGCCCCTGGGGGGGCCTT	0.663													10	215	---	---	---	---					
BCL9	607	broad.mit.edu	37	1	147090672	147090673	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:147090672_147090673insC	ENST00000234739.3	+	8	1451_1452	c.711_712insC	c.(709-714)caccccfs	p.HP237fs		NM_004326.2	NP_004317.2	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	237	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			breast(1)|large_intestine(2)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	7	all_hematologic(923;0.115)					TCCCACAACAGCCCCCAGCTCC	0.520			T	"""IGH@, IGL@"""	B-ALL								7	1198	---	---	---	---					
ZNF687	57592	broad.mit.edu	37	1	151261078	151261079	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:151261078_151261079insC	ENST00000368879.2	+	3	2288_2289	c.2190_2191insC	c.(2188-2193)cgccccfs	p.RP730fs		NM_020832.1	NP_065883.1	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	730					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding	p.H733fs*30(1)		breast(2)|central_nervous_system(3)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(11)|ovary(1)|upper_aerodigestive_tract(2)	32	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATAAGAATCGACCCCCCCATGT	0.579													11	186	---	---	---	---					
SPRR3	6707	broad.mit.edu	37	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	CCAGGCTACACCAAGGTCCCTGAA	-	rs1970328	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:152975806_152975829delCCAGGCTACACCAAGGTCCCTGAA	ENST00000331860.3	+	3	460_483	c.310_333delCCAGGCTACACCAAGGTCCCTGAA	c.(310-333)del	p.PGYTKVPE104del	SPRR3_ENST00000542696.1_In_Frame_Del_p.PGYTKVPE96del|SPRR3_ENST00000295367.4_In_Frame_Del_p.PGYTKVPE104del	NM_005416.2	NP_005407.1	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	104	14 X 8 AA approximate tandem repeats.		Missing.		keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity	p.Y106C(1)		endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	11	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTCCCTGAGCCAGGCTACACCAAGGTCCCTGAACCAGGCAGCA	0.567													34	450	---	---	---	---					
RUSC1	23623	broad.mit.edu	37	1	155297993	155297994	+	Frame_Shift_Ins	INS	-	-	G	rs149617084		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:155297993_155297994insG	ENST00000368352.5	+	9	2618_2619	c.2467_2468insG	c.(2467-2469)gggfs	p.G823fs	RUSC1_ENST00000462780.1_3'UTR|RUSC1_ENST00000292254.4_Frame_Shift_Ins_p.G354fs|RUSC1_ENST00000368349.4_Frame_Shift_Ins_p.G354fs|RUSC1_ENST00000368347.4_Frame_Shift_Ins_p.G413fs|RUSC1_ENST00000368354.3_Frame_Shift_Ins_p.G717fs	NM_001105203.1	NP_001098673.1	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1	823						cytoplasm|nucleolus	SH3/SH2 adaptor activity			breast(2)|endometrium(2)|kidney(2)|large_intestine(2)|liver(2)|lung(7)|ovary(2)|skin(1)|urinary_tract(1)	21	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			TCTTGTGAAGCGGGGGGCACCT	0.564													8	321	---	---	---	---					
RP11-451O13.1	0	broad.mit.edu	37	1	157917576	157917577	+	RNA	INS	-	-	AG	rs35469931	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:157917576_157917577insAG	ENST00000452528.1	+	0	438																											AAAGATGTATCGGGCTTGTGAG	0.460													3	5	---	---	---	---					
LINC00970	101978719	broad.mit.edu	37	1	169001321	169001323	+	RNA	DEL	CTC	CTC	-	rs72407435		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:169001321_169001323delCTC	ENST00000366408.3	-	0	209																											ccttctccttctccttcttcttc	0.414													3	5	---	---	---	---					
LINC00970	101978719	broad.mit.edu	37	1	169024423	169024424	+	RNA	INS	-	-	C	rs72512497	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:169024423_169024424insC	ENST00000366408.3	-	0	209																											GAAACTGCCTTCCCATACTCCT	0.465													5	4	---	---	---	---					
RP1-15D23.2	0	broad.mit.edu	37	1	172846570	172846571	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:172846570_172846571insT	ENST00000432694.1	+	0	223																											agcacctgttatttttttttga	0.371													2	4	---	---	---	---					
PAPPA2	60676	broad.mit.edu	37	1	176563963	176563964	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:176563963_176563964insG	ENST00000367662.3	+	3	2387_2388	c.1223_1224insG	c.(1222-1224)cggfs	p.R408fs	PAPPA2_ENST00000367661.3_Frame_Shift_Ins_p.R408fs	NM_020318.2	NP_064714.2	Q9BXP8	PAPP2_HUMAN	pappalysin 2	408					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.L408fs*49(2)|p.L408L(2)		NS(3)|breast(3)|central_nervous_system(7)|cervix(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(19)|lung(136)|ovary(7)|pancreas(1)|prostate(4)|skin(10)|upper_aerodigestive_tract(8)|urinary_tract(1)	226						TCTTTGCTCCTGGGGGGAGACA	0.574													7	428	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177383673	177383674	+	RNA	INS	-	-	T	rs112918581		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:177383673_177383674insT	ENST00000438575.1	-	0	296																											AGATGGAATGATTTTTTTTTTT	0.391													3	6	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177438629	177438629	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:177438629delA	ENST00000438575.1	-	0	296																											TAGAAGAAATAAAAAAAAAAT	0.328													2	4	---	---	---	---					
LINC01036	104169671	broad.mit.edu	37	1	187094956	187094956	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:187094956delA	ENST00000458683.1	+	0	105																											gcaaatttttaaaatagaatt	0.373													2	4	---	---	---	---					
LINC01036	104169671	broad.mit.edu	37	1	187319378	187319379	+	RNA	DEL	CA	CA	-	rs10536855		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:187319378_187319379delCA	ENST00000458683.1	+	0	249																											gaaatgagatcacacacacaca	0.416													2	4	---	---	---	---					
RP11-398M15.1	0	broad.mit.edu	37	1	189767956	189767988	+	RNA	DEL	AAAAGAAAAGAAAGAAAGGGAAGGAAGGAAGGG	AAAAGAAAAGAAAGAAAGGGAAGGAAGGAAGGG	-	rs149604754	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:189767956_189767988delAAAAGAAAAGAAAGAAAGGGAAGGAAGGAAGGG	ENST00000419614.1	+	0	364																											gaaggaaggaaaaagaaaagaaagaaagggaaggaaggaagggaggaaggaaa	0.425													8	22	---	---	---	---					
LINC01031	101929184	broad.mit.edu	37	1	193299280	193299281	+	RNA	INS	-	-	GT			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:193299280_193299281insGT	ENST00000420807.1	+	0	194																											agagagagagagtgtgtgtgtg	0.386													4	9	---	---	---	---					
LOC400800	400800	broad.mit.edu	37	1	199255214	199255215	+	RNA	INS	-	-	GT	rs10660690		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:199255214_199255215insGT	ENST00000452199.1	+	0	309																											GGAGCAGAAAAgtgtgtgtgtg	0.411													4	5	---	---	---	---					
LINC00862	554279	broad.mit.edu	37	1	200342484	200342485	+	RNA	INS	-	-	A	rs142076767		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:200342484_200342485insA	ENST00000367355.1	-	0	146					NR_040064.1																						ttttgtaaattaaaaaaaaaaa	0.327													3	2	---	---	---	---					
PROX1-AS1	100505832	broad.mit.edu	37	1	214098201	214098202	+	RNA	INS	-	-	C	rs147210776	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:214098201_214098202insC	ENST00000433082.2	-	0	195				PROX1-AS1_ENST00000413560.1_RNA|PROX1-AS1_ENST00000598105.1_RNA|PROX1-AS1_ENST00000601907.1_RNA|PROX1-AS1_ENST00000601335.1_RNA|PROX1-AS1_ENST00000601854.1_RNA|PROX1-AS1_ENST00000593620.1_RNA|PROX1-AS1_ENST00000600591.1_RNA|PROX1-AS1_ENST00000601744.1_RNA																							atttctcttctagatctttgca	0.406													4	6	---	---	---	---					
HLX-AS1	100873924	broad.mit.edu	37	1	221043354	221043355	+	RNA	INS	-	-	GTTTT	rs150997629	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:221043354_221043355insGTTTT	ENST00000552026.1	-	0	292																											gaaagccagaagttttgttttg	0.366													2	4	---	---	---	---					
TRIM17	51127	broad.mit.edu	37	1	228596934	228596935	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:228596934_228596935insG	ENST00000366697.2	-	5	1777_1778	c.821_822insC	c.(820-822)cacfs	p.H274fs	TRIM17_ENST00000295033.3_Frame_Shift_Ins_p.H274fs|RP11-245P10.4_ENST00000436779.1_RNA|TRIM17_ENST00000456946.2_Frame_Shift_Ins_p.H274fs|TRIM17_ENST00000366698.2_Frame_Shift_Ins_p.H274fs			Q9Y577	TRI17_HUMAN	tripartite motif containing 17	274					protein autoubiquitination	intracellular	protein binding|ubiquitin-protein ligase activity|zinc ion binding			NS(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(3)|ovary(1)	10		Prostate(94;0.0724)				TGGGTCTGGTTGGGGGGGCAAC	0.579													7	155	---	---	---	---					
LOC101927604	101927604	broad.mit.edu	37	1	231010632	231010633	+	RNA	INS	-	-	T	rs146416373	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:231010632_231010633insT	ENST00000439341.1	+	0	41_42																											ggccaagaacgttttttttttt	0.470													6	4	---	---	---	---					
LINC01341	149134	broad.mit.edu	37	1	246945435	246945436	+	RNA	INS	-	-	A	rs113175588		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr1:246945435_246945436insA	ENST00000421003.1	+	0	1439				RP11-439E19.8_ENST00000451123.1_RNA|RP11-439E19.3_ENST00000505748.1_RNA																							gactccatctcaaaaaaaaaaa	0.460													2	4	---	---	---	---					
AC079779.6	0	broad.mit.edu	37	2	326035	326035	+	RNA	DEL	T	T	-	rs71392511		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:326035delT	ENST00000436808.2	+	0	11																											accttttgtattttttttttt	0.318													4	3	---	---	---	---					
AC144450.1	0	broad.mit.edu	37	2	1601146	1601147	+	RNA	DEL	AC	AC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:1601146_1601147delAC	ENST00000438247.1	-	0	515																											CACAGATCAGacacacacacac	0.495													6	7	---	---	---	---					
LINC01249	727982	broad.mit.edu	37	2	4676254	4676254	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:4676254delT	ENST00000412134.1	-	0	2220					NR_034134.1																						TACTTAAGCATTTTTTTTTTA	0.289													2	4	---	---	---	---					
LOC100506457	100506457	broad.mit.edu	37	2	12170420	12170421	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:12170420_12170421insC	ENST00000412294.1	+	0	197																											TTGTATAATCTCCCCCCCACAA	0.307													2	4	---	---	---	---					
LOC100506457	100506457	broad.mit.edu	37	2	12606193	12606196	+	RNA	DEL	GTGC	GTGC	-	rs12053089		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:12606193_12606196delGTGC	ENST00000412294.1	+	0	412																											ACACATACATGTGCGCACGCGCGc	0.431													2	4	---	---	---	---					
AC092635.1	0	broad.mit.edu	37	2	13709874	13709874	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:13709874delA	ENST00000434509.1	+	0	342																											ATCTCTTAAGAAAAAAAAAAA	0.284													4	4	---	---	---	---					
LINC00276	100499171	broad.mit.edu	37	2	14497336	14497337	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:14497336_14497337insA	ENST00000418420.1	-	0	116					NR_103814.1																						gatcctggaacaaaaaaagaat	0.312													2	4	---	---	---	---					
AC008278.2	0	broad.mit.edu	37	2	15708782	15708783	+	RNA	INS	-	-	T	rs146500001		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:15708782_15708783insT	ENST00000438178.1	+	0	239																											CAACCTCCCCCttttttttttt	0.490													3	5	---	---	---	---					
AC010096.2	0	broad.mit.edu	37	2	19677680	19677680	+	RNA	DEL	C	C	-	rs71402666		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:19677680delC	ENST00000450628.1	+	0	163																											ACTTATGTTTCAAAAACTTAC	0.328													6	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22194994	22194995	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:22194994_22194995insA	ENST00000450551.1	-	0	200																											ACATGATGGAGAAAAAAAAAAA	0.386													5	2	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22305023	22305023	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:22305023delA	ENST00000450551.1	-	0	200																											tgtctaaaacaaaaaaaaaaa	0.393													3	4	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22342571	22342571	+	RNA	DEL	T	T	-	rs59496929		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:22342571delT	ENST00000450551.1	-	0	200																											atttggcaggttttttttttt	0.358													2	4	---	---	---	---					
AC016768.1	0	broad.mit.edu	37	2	23281919	23281919	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:23281919delA	ENST00000421581.1	-	0	91																											GAAGAAGAAGAAAAAACTCAC	0.408													6	9	---	---	---	---					
AC073218.1	0	broad.mit.edu	37	2	34778342	34778342	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:34778342delA	ENST00000422558.1	+	0	475																											ttcaacatataaatgttgagg	0.383													2	4	---	---	---	---					
AC012593.1	0	broad.mit.edu	37	2	35108898	35108902	+	RNA	DEL	CCTTC	CCTTC	-	rs5023874	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:35108898_35108902delCCTTC	ENST00000588944.1	+	0	115																											tcctttctttccttcctttctttct	0.395													4	4	---	---	---	---					
AC012593.1	0	broad.mit.edu	37	2	35290388	35290389	+	RNA	INS	-	-	T	rs74474841		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:35290388_35290389insT	ENST00000588944.1	+	0	115																											gttccctgtggttttttttttt	0.366													3	6	---	---	---	---					
AC016995.3	0	broad.mit.edu	37	2	38651171	38651172	+	RNA	DEL	AC	AC	-	rs72208746		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:38651171_38651172delAC	ENST00000417039.1	-	0	894																											acacacacaaacacacacacac	0.470													3	6	---	---	---	---					
AC079807.4	0	broad.mit.edu	37	2	48391231	48391232	+	RNA	DEL	GT	GT	-	rs35338920		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:48391231_48391232delGT	ENST00000447571.1	-	0	240																		p.0?(2)									gtgtgtgtacgtgtgtgtgtgt	0.342													2	4	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	52086055	52086055	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:52086055delG	ENST00000440698.1	+	0	839																											AAAAAAAATTGCtgtaacttc	0.318													5	5	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	52110745	52110745	+	RNA	DEL	T	T	-	rs35354607		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:52110745delT	ENST00000440698.1	+	0	879																											cttcaaggtattttttttttt	0.318													3	5	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	52189124	52189124	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:52189124delA	ENST00000440698.1	+	0	879																											actccatctcaaaaaaaaaaa	0.433													2	4	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	52621891	52621892	+	RNA	INS	-	-	T	rs59767236		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:52621891_52621892insT	ENST00000440698.1	+	0	2999																											CTCACTTTTGATTTTTTTTTTT	0.257													5	4	---	---	---	---					
LINC01122	400955	broad.mit.edu	37	2	59175486	59175486	+	RNA	DEL	T	T	-	rs11348492		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:59175486delT	ENST00000452840.1	+	0	815																											gccaggctaattttttttttt	0.498													4	4	---	---	---	---					
LOC101927285	101927285	broad.mit.edu	37	2	59463829	59463830	+	RNA	INS	-	-	TCTG	rs143065951	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:59463829_59463830insTCTG	ENST00000409590.1	+	0	67				RP11-444A22.1_ENST00000606382.1_lincRNA																							attacacttgttctatctttca	0.307													4	7	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59719442	59719443	+	RNA	DEL	CA	CA	-	rs72536076		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:59719442_59719443delCA	ENST00000606382.1	-	0	433																											AAGGTATTTTCACAGACTAGGA	0.272													7	7	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59750033	59750033	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:59750033delT	ENST00000606382.1	-	0	236																											CTCTATTTGCTTTTTTTTTTT	0.279													6	11	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	60273380	60273380	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:60273380delC	ENST00000606382.1	-	0	110																											aaaaatgatgcagatatgctc	0.279													2	4	---	---	---	---					
LOC100507006	100507006	broad.mit.edu	37	2	64377618	64377619	+	RNA	DEL	TG	TG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:64377618_64377619delTG	ENST00000438115.2	+	0	108																											GTGATAAAGTtgtgtgtgtgtg	0.356													3	5	---	---	---	---					
LINC00309	150992	broad.mit.edu	37	2	64414728	64414729	+	RNA	INS	-	-	A	rs56104470		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:64414728_64414729insA	ENST00000431020.1	-	0	2642				AC074289.1_ENST00000438115.2_RNA	NR_033837.1																						GTGTTTCAAATAAAAAAAAAAA	0.322													3	3	---	---	---	---					
AC007386.4	0	broad.mit.edu	37	2	65272660	65272661	+	RNA	INS	-	-	T	rs76164150		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:65272660_65272661insT	ENST00000430134.1	-	0	638																											acgcttttctcttttttttttt	0.421													3	5	---	---	---	---					
LOC101927533	101927533	broad.mit.edu	37	2	65785105	65785106	+	RNA	INS	-	-	TCA	rs67675393	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:65785105_65785106insTCA	ENST00000377977.3	+	0	862																											gataCCAATTCtcatcatcatc	0.411													5	5	---	---	---	---					
LOC101060019	101060019	broad.mit.edu	37	2	67143092	67143093	+	RNA	INS	-	-	TG	rs71409196		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67143092_67143093insTG	ENST00000426260.1	+	0	34																											ccccgtctctctgtgtgtgtgt	0.366													5	5	---	---	---	---					
LOC101060019	101060019	broad.mit.edu	37	2	67145214	67145215	+	RNA	INS	-	-	G	rs76722849	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67145214_67145215insG	ENST00000426260.1	+	0	34																											ACACATCCCCTGGGCCAGTATT	0.386													3	6	---	---	---	---					
LOC644838	644838	broad.mit.edu	37	2	67384331	67384332	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67384331_67384332insA	ENST00000433133.1	-	0	256				AC023115.2_ENST00000452716.1_lincRNA|AC023115.1_ENST00000594329.1_lincRNA	NR_038844.1																						ATTTGACTACCAAAAATTATTC	0.361													2	4	---	---	---	---					
LOC644838	644838	broad.mit.edu	37	2	67395985	67395987	+	RNA	DEL	TTT	TTT	-	rs71970559		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67395985_67395987delTTT	ENST00000433133.1	-	0	205				AC023115.2_ENST00000452716.1_lincRNA|AC023115.1_ENST00000594329.1_lincRNA	NR_038844.1																						taatctcctcttttttttttttt	0.409													3	6	---	---	---	---					
LOC644838	644838	broad.mit.edu	37	2	67416222	67416222	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67416222delT	ENST00000433133.1	-	0	205				AC023115.2_ENST00000452716.1_lincRNA|AC023115.1_ENST00000594329.1_lincRNA	NR_038844.1																						TACTGTTTAGTGGttttattt	0.363													2	4	---	---	---	---					
LOC644838	644838	broad.mit.edu	37	2	67421647	67421649	+	RNA	DEL	TTC	TTC	-	rs138275984		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67421647_67421649delTTC	ENST00000433133.1	-	0	205				AC023115.2_ENST00000452716.1_lincRNA|AC023115.1_ENST00000594329.1_lincRNA	NR_038844.1																						tttctttttattcttttttctcc	0.399													4	4	---	---	---	---					
AC010987.5	0	broad.mit.edu	37	2	67900197	67900198	+	RNA	DEL	CA	CA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:67900197_67900198delCA	ENST00000419809.1	-	0	126																											tgccacagcgcacacacacaca	0.411													7	36	---	---	---	---					
DCTN1	1639	broad.mit.edu	37	2	74593376	74593377	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:74593376_74593377insG	ENST00000361874.3	-	23	3071_3072	c.2754_2755insC	c.(2752-2757)ccgcaafs	p.Q919fs	DCTN1_ENST00000409438.1_Frame_Shift_Ins_p.Q785fs|DCTN1_ENST00000495643.1_5'UTR|DCTN1_ENST00000394003.3_Frame_Shift_Ins_p.Q912fs|DCTN1_ENST00000409567.3_Frame_Shift_Ins_p.Q899fs|DCTN1_ENST00000409240.1_Frame_Shift_Ins_p.Q882fs|DCTN1_ENST00000409868.1_Frame_Shift_Ins_p.Q902fs|DCTN1_ENST00000407639.2_Frame_Shift_Ins_p.Q785fs	NM_004082.4	NP_004073.2	Q14203	DCTN1_HUMAN	dynactin 1	919					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(20)|ovary(4)|prostate(1)|skin(3)	45						CCTACCTTGCTGGGGGGCCGCT	0.559													10	607	---	---	---	---					
TCF7L1	83439	broad.mit.edu	37	2	85529688	85529689	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:85529688_85529689insC	ENST00000282111.3	+	5	882_883	c.607_608insC	c.(607-609)cccfs	p.P203fs		NM_031283.2	NP_112573.1	Q9HCS4	TF7L1_HUMAN	transcription factor 7-like 1 (T-cell specific, HMG-box)	203	Pro-rich.				chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(3)|skin(4)|upper_aerodigestive_tract(1)	18						TGACCACTTCTCCCCCGGCTCC	0.559													8	489	---	---	---	---					
AC027612.3	0	broad.mit.edu	37	2	91898336	91898340	+	RNA	DEL	AAAAA	AAAAA	-	rs59479329		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:91898336_91898340delAAAAA	ENST00000436174.1	-	0	168																											caaaagaaagaaaaaaaaaaaaaaa	0.376													5	8	---	---	---	---					
LOC102724691	102724691	broad.mit.edu	37	2	105591874	105591879	+	RNA	DEL	AACAAC	AACAAC	-	rs71740750		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:105591874_105591879delAACAAC	ENST00000456519.1	-	0	43																											ctgtctcaaaaacaacaacaacaaca	0.481													4	3	---	---	---	---					
AC096669.2	0	broad.mit.edu	37	2	108047236	108047243	+	RNA	DEL	GTGTGTGC	GTGTGTGC	-	rs4676015	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:108047236_108047243delGTGTGTGC	ENST00000414300.1	-	0	295																											gtgtgtgtgtgtgtgtgCGCGCACACGC	0.486													6	3	---	---	---	---					
AC096669.2	0	broad.mit.edu	37	2	108123527	108123528	+	RNA	INS	-	-	T	rs35615141		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:108123527_108123528insT	ENST00000414300.1	-	0	295																											gtcttttcagattttttttttt	0.297													4	3	---	---	---	---					
AC017074.2	0	broad.mit.edu	37	2	114445133	114445135	+	RNA	DEL	CAT	CAT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:114445133_114445135delCAT	ENST00000424612.1	-	0	479																											agtatcaaaacatcagaaacata	0.261													5	4	---	---	---	---					
AC078882.1	0	broad.mit.edu	37	2	142890424	142890425	+	RNA	DEL	GA	GA	-	rs56715580		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:142890424_142890425delGA	ENST00000436132.1	-	0	67																											gtgtgtgtgtgagagagagaga	0.381													3	3	---	---	---	---					
TEX41	401014	broad.mit.edu	37	2	145457501	145457502	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:145457501_145457502insG	ENST00000445791.1	+	0	124					NR_033870.2																						aaaagatagtaggggaggggaa	0.327													2	4	---	---	---	---					
TEX41	401014	broad.mit.edu	37	2	145573550	145573551	+	RNA	DEL	TC	TC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:145573550_145573551delTC	ENST00000445791.1	+	0	307					NR_033870.2																						gtctgtcttttctctctctctc	0.475													3	4	---	---	---	---					
TEX41	401014	broad.mit.edu	37	2	145655132	145655133	+	RNA	INS	-	-	T	rs59273579		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:145655132_145655133insT	ENST00000445791.1	+	0	307					NR_033870.2																						TTAAAATATTCTTTTTTTTTTT	0.297													3	3	---	---	---	---					
LOC101928553	101928553	broad.mit.edu	37	2	149624336	149624337	+	RNA	INS	-	-	AC	rs141734544	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:149624336_149624337insAC	ENST00000601658.1	-	0	676																											AGAAGCAAGATacacacacaca	0.376													5	3	---	---	---	---					
AC007364.1	0	broad.mit.edu	37	2	150668564	150668565	+	RNA	INS	-	-	ATC	rs77788736	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:150668564_150668565insATC	ENST00000295052.3	-	0	1302				AC144449.1_ENST00000449714.1_RNA																							tctcactccctatctcagcatg	0.515													2	4	---	---	---	---					
AC009227.2	0	broad.mit.edu	37	2	155313469	155313469	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:155313469delG	ENST00000434635.1	-	0	73																											AAGGAAGGAAGGGGAGGAAGA	0.448													2	4	---	---	---	---					
AC010127.3	0	broad.mit.edu	37	2	166829246	166829253	+	RNA	DEL	AAAAAAAA	AAAAAAAA	-	rs56400244		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:166829246_166829253delAAAAAAAA	ENST00000595647.1	+	0	194				AC010127.3_ENST00000597623.1_RNA																							catcaacatcaaaaaaaaaaaaaaaaaa	0.394													3	4	---	---	---	---					
AC007319.1	0	broad.mit.edu	37	2	188178685	188178686	+	RNA	DEL	GG	GG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:188178685_188178686delGG	ENST00000412276.1	+	0	189				AC007319.1_ENST00000453517.1_RNA																							caagtccttcgggagaagaaaa	0.381													2	4	---	---	---	---					
LOC102724861	102724861	broad.mit.edu	37	2	216429207	216429208	+	RNA	INS	-	-	TGTGTGTG	rs71047909	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:216429207_216429208insTGTGTGTG	ENST00000417485.2	+	0	216																											gaaatcatatttgtgtgtgtgt	0.396													3	6	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221490080	221490080	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:221490080delG	ENST00000414512.1	+	0	368																											cacaacacaTGAACACGTACT	0.408													2	4	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221523579	221523579	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:221523579delA	ENST00000414512.1	+	0	898																											TCAATTGGGTAAATTACTGCA	0.299													2	4	---	---	---	---					
AC010149.4	0	broad.mit.edu	37	2	231422051	231422051	+	RNA	DEL	A	A	-	rs67398961		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:231422051delA	ENST00000455357.1	-	0	437				AC010149.4_ENST00000414539.1_RNA																							agagaaaatgaaaaaaaaaaa	0.398													3	4	---	---	---	---					
AC079135.1	0	broad.mit.edu	37	2	237200946	237200946	+	RNA	DEL	T	T	-	rs112406422		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:237200946delT	ENST00000415226.1	+	0	397																											TTGCAAAGTATTTTTTTTTTT	0.448													9	12	---	---	---	---					
LINC01237	101927289	broad.mit.edu	37	2	242931718	242931719	+	RNA	INS	-	-	T	rs139937637	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:242931718_242931719insT	ENST00000415434.1	+	0	310																											tccaccatccaccatccatcca	0.510													2	4	---	---	---	---					
LINC01237	101927289	broad.mit.edu	37	2	242999990	242999990	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr2:242999990delC	ENST00000415434.1	+	0	310				AC093642.6_ENST00000446593.1_lincRNA																							TTGAGCAAAGCCCCATCAGCC	0.607													4	2	---	---	---	---					
LINC01266	101927215	broad.mit.edu	37	3	871477	871478	+	RNA	INS	-	-	A	rs71062503	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:871477_871478insA	ENST00000420823.1	+	0	212																											atcccagcattaaccaaaaagt	0.401													9	1	---	---	---	---					
AC026188.1	0	broad.mit.edu	37	3	3482329	3482329	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:3482329delA	ENST00000455703.1	-	0	59																											acatttctccaaaaaacatat	0.284													4	2	---	---	---	---					
AC069277.2	0	broad.mit.edu	37	3	6537909	6537932	+	RNA	DEL	GAGCACATTTGAATGAGGCTCTAG	GAGCACATTTGAATGAGGCTCTAG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:6537909_6537932delGAGCACATTTGAATGAGGCTCTAG	ENST00000433639.1	+	0	194																											ttttgaagaagagcacatttgaatgaggctctaggtgtgaggag	0.433													2	4	---	---	---	---					
AC069277.2	0	broad.mit.edu	37	3	6617051	6617051	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:6617051delT	ENST00000433639.1	+	0	194																											tacatttttatttttttgaga	0.378													2	4	---	---	---	---					
LMCD1-AS1	100288428	broad.mit.edu	37	3	8021594	8021594	+	RNA	DEL	T	T	-	rs60773544		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:8021594delT	ENST00000441861.1	-	0	508				LMCD1-AS1_ENST00000446281.1_RNA																							gtgaaaaccctgtttctacca	0.512													3	3	---	---	---	---					
LOC100996624	100996624	broad.mit.edu	37	3	27875429	27875430	+	RNA	DEL	GA	GA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:27875429_27875430delGA	ENST00000432163.1	-	0	138				AC098973.2_ENST00000414382.1_lincRNA																							GATTGGAGAGGAGAGAGAGAGA	0.342													3	6	---	---	---	---					
LOC102724297	102724297	broad.mit.edu	37	3	46426347	46426354	+	RNA	DEL	GATAGATA	GATAGATA	-	rs71956978		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:46426347_46426354delGATAGATA	ENST00000451485.1	-	0	391																											gtacatagatgatagatagatagataga	0.404													3	6	---	---	---	---					
CTD-2185K10.1	0	broad.mit.edu	37	3	59074575	59074575	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:59074575delA	ENST00000487624.1	+	0	117																											TTTACCTCTTAAAAAAATGTA	0.338													2	4	---	---	---	---					
RP11-47P18.2	0	broad.mit.edu	37	3	80837357	80837364	+	RNA	DEL	ACACACAC	ACACACAC	-	rs71101997		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:80837357_80837364delACACACAC	ENST00000473938.1	+	0	421				RP11-47P18.1_ENST00000482003.1_lincRNA																							tcttttgcatacacacacacacacacac	0.327													6	6	---	---	---	---					
LINC00971	440970	broad.mit.edu	37	3	84704965	84704966	+	RNA	DEL	GC	GC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:84704965_84704966delGC	ENST00000484892.1	-	0	6427					NR_033860.1																						atatgcacgtgcgcacacacac	0.371													3	6	---	---	---	---					
GABRR3	200959	broad.mit.edu	37	3	97736849	97736849	+	RNA	DEL	T	T	-	rs144490691		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:97736849delT	ENST00000472788.1	-	0	240					NM_001105580.2	NP_001099050.1	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, rho 3						gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			large_intestine(2)|lung(1)	3						TCCAGttttcttttttttttt	0.279													4	4	---	---	---	---					
LINC00882	100302640	broad.mit.edu	37	3	106608272	106608273	+	RNA	INS	-	-	AAA	rs66858741		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:106608272_106608273insAAA	ENST00000484698.1	-	0	628																											gcttagacaccaaaaaaaaaaa	0.366													4	6	---	---	---	---					
LINC00882	100302640	broad.mit.edu	37	3	106701625	106701626	+	RNA	INS	-	-	GTGT	rs149627634	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:106701625_106701626insGTGT	ENST00000484698.1	-	0	337																											AATAAATTTGAGTGTGTGTGTG	0.322													7	6	---	---	---	---					
LINC00635	151658	broad.mit.edu	37	3	107585159	107585159	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:107585159delT	ENST00000464359.2	-	0	283					NR_015414.1																						gagatggggcttttaggaagt	0.443													2	4	---	---	---	---					
RP11-572M11.1	0	broad.mit.edu	37	3	112773702	112773703	+	RNA	INS	-	-	GT	rs140163066	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:112773702_112773703insGT	ENST00000462010.1	-	0	459				RP11-572M11.4_ENST00000470313.1_RNA|RP11-572M11.4_ENST00000496389.1_RNA|RP11-572M11.4_ENST00000467342.1_RNA|RP11-572M11.4_ENST00000460707.1_RNA																							agagagagagagtgtgtgtgtg	0.406													5	6	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	117917093	117917094	+	RNA	INS	-	-	CTTCCCC	rs12632650	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:117917093_117917094insCTTCCCC	ENST00000482142.1	-	0	232																											agagtttcctacttcccccatc	0.312													3	3	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	117920831	117920831	+	RNA	DEL	A	A	-	rs35850647		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:117920831delA	ENST00000482142.1	-	0	232																											caaTCATATCAGAAGTCACAA	0.368													4	4	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	118211495	118211497	+	RNA	DEL	TAA	TAA	-	rs72388578		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:118211495_118211497delTAA	ENST00000482142.1	-	0	232																											TTGTTTAGATTAATAATATTTAT	0.261													4	3	---	---	---	---					
CASR	846	broad.mit.edu	37	3	121973138	121973139	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:121973138_121973139insG	ENST00000498619.1	+	2	540_541	c.102_103insG	c.(100-105)ctggggfs	p.LG34fs	CASR_ENST00000296154.5_Frame_Shift_Ins_p.LG34fs|CASR_ENST00000490131.1_Frame_Shift_Ins_p.LG34fs	NM_001178065.1	NP_001171536.1	P41180	CASR_HUMAN	calcium-sensing receptor	34					anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			NS(1)|breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(13)|lung(45)|ovary(4)|prostate(3)|skin(5)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	84				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	ACATTATCCTTGGGGGGCTCTT	0.515													11	611	---	---	---	---					
NPHP3-AS1	348808	broad.mit.edu	37	3	132530472	132530472	+	RNA	DEL	T	T	-	rs61360650		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:132530472delT	ENST00000504440.1	+	0	478					NR_002811.1																						tctatctgtctatctatctat	0.348													2	4	---	---	---	---					
TFP1	100129696	broad.mit.edu	37	3	133446693	133446694	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:133446693_133446694insG	ENST00000460564.1	+	0	381																											agggcaggcctgtggtgacaaa	0.411													3	6	---	---	---	---					
ZBTB38	253461	broad.mit.edu	37	3	141059834	141059838	+	RNA	DEL	GAAAG	GAAAG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:141059834_141059838delGAAAG	ENST00000507698.1	-	0	166																											gaaagaaagagaaagaagaaagaaa	0.288													4	6	---	---	---	---					
PLSCR2	57047	broad.mit.edu	37	3	146129780	146129784	+	RNA	DEL	AAGTT	AAGTT	-	rs113754894		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:146129780_146129784delAAGTT	ENST00000490344.1	-	0	143																											cagcttgcacaagttaagtccttga	0.444													5	10	---	---	---	---					
RP11-680B3.2	0	broad.mit.edu	37	3	148657318	148657318	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:148657318delT	ENST00000488190.1	-	0	66																											TGGAGGATGATTTTTTTTTCA	0.343													3	4	---	---	---	---					
RP11-680B3.2	0	broad.mit.edu	37	3	148677137	148677138	+	RNA	INS	-	-	A	rs142461110		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:148677137_148677138insA	ENST00000488190.1	-	0	66																											gactcagtctcaaaaaaaaaaa	0.525													4	7	---	---	---	---					
AADACL2-AS1	101928142	broad.mit.edu	37	3	151498071	151498071	+	RNA	DEL	T	T	-	rs35017676		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:151498071delT	ENST00000483843.2	-	0	439				RP11-64D22.2_ENST00000483636.1_RNA|RP11-454C18.2_ENST00000475855.1_RNA																							CACACAAGGATTTTTTTTTTT	0.318													4	4	---	---	---	---					
RP11-217E22.5	0	broad.mit.edu	37	3	153603129	153603130	+	RNA	INS	-	-	T	rs71782507	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:153603129_153603130insT	ENST00000463297.1	+	0	79				RP11-23D24.2_ENST00000488210.1_RNA																							TTTTGTAATGATTTTTTTCAAT	0.302													4	5	---	---	---	---					
LINC01487	101928190	broad.mit.edu	37	3	154960073	154960073	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:154960073delT	ENST00000462531.1	+	0	681																											AACAATGGTATTAGTACTCCT	0.333													2	4	---	---	---	---					
RP11-324C10.1	0	broad.mit.edu	37	3	172960452	172960453	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:172960452_172960453insG	ENST00000447709.1	+	0	22																											TTTGGTTGAAAGGGGGGAAATC	0.332													2	4	---	---	---	---					
RP11-644C3.1	0	broad.mit.edu	37	3	176513031	176513031	+	RNA	DEL	G	G	-	rs35168732		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:176513031delG	ENST00000428516.1	-	0	198																											TGCAAAAAAAGTCGTGAGCTT	0.373													10	4	---	---	---	---					
RP11-644C3.1	0	broad.mit.edu	37	3	176515504	176515505	+	RNA	INS	-	-	A	rs66855789	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:176515504_176515505insA	ENST00000428516.1	-	0	198																											tttctttgtccagagaatgtga	0.396													6	3	---	---	---	---					
LINC00578	100505566	broad.mit.edu	37	3	177404951	177404962	+	RNA	DEL	TTTGTGTGTGTG	TTTGTGTGTGTG	-	rs71626282		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:177404951_177404962delTTTGTGTGTGTG	ENST00000442937.1	+	0	428				RP11-114M1.1_ENST00000423466.2_lincRNA	NR_047568.1																						CCTCTTTCTCTTtgtgtgtgtgtgtgtgtgtg	0.443													3	6	---	---	---	---					
LINC00578	100505566	broad.mit.edu	37	3	177459332	177459332	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:177459332delG	ENST00000442937.1	+	0	428					NR_047568.1																						gaaatattttgaaatatttca	0.289													2	4	---	---	---	---					
KCNMB2	10242	broad.mit.edu	37	3	178087502	178087503	+	RNA	DEL	GA	GA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:178087502_178087503delGA	ENST00000411727.1	-	0	190																											gagaaagagggagagagagaga	0.465													3	5	---	---	---	---					
ECE2	9718	broad.mit.edu	37	3	184008355	184008356	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:184008355_184008356insC	ENST00000402825.3	+	15	2020_2021	c.2020_2021insC	c.(2020-2022)cccfs	p.P674fs	ECE2_ENST00000404464.3_Frame_Shift_Ins_p.P556fs|ECE2_ENST00000357474.5_Frame_Shift_Ins_p.P602fs|EIF2B5_ENST00000444495.1_Intron|ECE2_ENST00000359140.4_Frame_Shift_Ins_p.P527fs	NM_014693.3	NP_055508.3	O60344	ECE2_HUMAN	endothelin converting enzyme 2	674	Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(11)|lung(13)|ovary(3)|prostate(1)|skin(4)|upper_aerodigestive_tract(4)|urinary_tract(4)	49	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GTGGAGCATGACCCCCCAGACA	0.609													8	415	---	---	---	---					
LINCR-0002	103344926	broad.mit.edu	37	3	191287345	191287346	+	RNA	INS	-	-	A	rs34741479	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:191287345_191287346insA	ENST00000439804.1	+	0	61																											TTTGTTTTGTGAAAAAAAAACA	0.317													5	3	---	---	---	---					
RP11-135A1.3	0	broad.mit.edu	37	3	193812483	193812484	+	RNA	INS	-	-	T	rs71937705		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:193812483_193812484insT	ENST00000457815.1	+	0	86																											ttcagttagccttttttttttt	0.371													2	4	---	---	---	---					
LINC00969	440993	broad.mit.edu	37	3	195398661	195398663	+	RNA	DEL	AAG	AAG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr3:195398661_195398663delAAG	ENST00000445430.1	+	0	1088																											ttaaaaaaaaaaGAAGTCGGATG	0.369													3	4	---	---	---	---					
LINC01182	101929071	broad.mit.edu	37	4	13750729	13750730	+	RNA	INS	-	-	A	rs33972982	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:13750729_13750730insA	ENST00000510907.1	+	0	281																											TGGGCCCCATTAAAATGGCTAT	0.332													4	1	---	---	---	---					
ZEB2P1	100420926	broad.mit.edu	37	4	16390367	16390367	+	RNA	DEL	A	A	-	rs77858710		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:16390367delA	ENST00000572816.1	-	0	793																											TGCCACCCCCAGCCTCTGCTT	0.408													7	4	---	---	---	---					
LOC101929123	101929123	broad.mit.edu	37	4	17182605	17182606	+	RNA	INS	-	-	T	rs55934695		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:17182605_17182606insT	ENST00000509964.1	-	0	254																											ctacgttatacttttttttttt	0.396													4	3	---	---	---	---					
RP11-3J1.1	0	broad.mit.edu	37	4	19442605	19442605	+	RNA	DEL	G	G	-	rs5856512		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:19442605delG	ENST00000505347.1	-	0	349																											ttttttttttgtttgtttgtt	0.408													5	3	---	---	---	---					
RP11-608O21.1	0	broad.mit.edu	37	4	19632028	19632029	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:19632028_19632029insC	ENST00000511431.1	+	0	288																											TCTATATGTGGCCCCAAATCCC	0.436													2	4	---	---	---	---					
LOC101929199	101929199	broad.mit.edu	37	4	27223992	27223993	+	RNA	INS	-	-	T	rs148820935	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:27223992_27223993insT	ENST00000512873.1	+	0	85																											tctatatttcctttttttttgc	0.302													2	4	---	---	---	---					
RP11-722M1.1	0	broad.mit.edu	37	4	36618916	36618917	+	RNA	DEL	GT	GT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:36618916_36618917delGT	ENST00000505298.1	-	0	51																											ttatacataggtgtgtgtgtgt	0.322													2	4	---	---	---	---					
RP11-227F19.1	0	broad.mit.edu	37	4	41822996	41822996	+	RNA	DEL	A	A	-	rs148797900		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:41822996delA	ENST00000508038.1	+	0	588																											GTTTGGTGTTAAAAAAAAAAT	0.328													2	4	---	---	---	---					
LOC152578	152578	broad.mit.edu	37	4	53663563	53663563	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:53663563delT	ENST00000514957.1	+	0	321					NR_040106.1																						CCTGATGCTCTTTACCCTCtt	0.358													2	4	---	---	---	---					
RP11-506N2.1	0	broad.mit.edu	37	4	59809714	59809714	+	RNA	DEL	T	T	-	rs11316538		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:59809714delT	ENST00000513551.1	-	0	236																											TACTTGCCAATTTTTTTTTAA	0.254													3	3	---	---	---	---					
RP11-340A13.2	0	broad.mit.edu	37	4	59893356	59893357	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:59893356_59893357insT	ENST00000513836.1	+	0	54																											tgatacggttgtttttttcttg	0.322													4	6	---	---	---	---					
RP11-725D20.1	0	broad.mit.edu	37	4	60476840	60476841	+	RNA	INS	-	-	AAG	rs148886579	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:60476840_60476841insAAG	ENST00000504537.1	-	0	114																											gggaataaattgaggaaaaaca	0.361													5	3	---	---	---	---					
RP11-25H12.1	0	broad.mit.edu	37	4	66934327	66934328	+	RNA	INS	-	-	TA			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:66934327_66934328insTA	ENST00000508572.1	+	0	463																											ATAGTTGTGTTTATATATATGT	0.317													4	4	---	---	---	---					
LINC01088	100505875	broad.mit.edu	37	4	79911239	79911240	+	RNA	DEL	TA	TA	-	rs111311169		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:79911239_79911240delTA	ENST00000509088.1	+	0	182				RP11-438E5.1_ENST00000510667.1_RNA	NR_038342.1																						tgtgtgtgtgtatgtgtgcgcg	0.589													4	9	---	---	---	---					
PCAT4	118425	broad.mit.edu	37	4	80753633	80753634	+	RNA	INS	-	-	A	rs71216297	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:80753633_80753634insA	ENST00000504263.1	+	0	133					NR_026555.1																						ATACACAACTGAAAAAACAGAA	0.337													5	4	---	---	---	---					
RP11-529H2.1	0	broad.mit.edu	37	4	88185024	88185024	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:88185024delT	ENST00000503666.1	-	0	88																											ttaaaaaaaattttttttttt	0.448													3	6	---	---	---	---					
RP11-529H2.2	0	broad.mit.edu	37	4	88244408	88244409	+	RNA	INS	-	-	A	rs11450285		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:88244408_88244409insA	ENST00000508163.1	-	0	187																											gaccctgtctcaaaaaaaaaaa	0.475													2	4	---	---	---	---					
LOC101929210	101929210	broad.mit.edu	37	4	95093783	95093783	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:95093783delT	ENST00000501965.2	-	0	27																											CAAGCCTTCCTTGATTTGTTG	0.353													2	4	---	---	---	---					
LOC256880	256880	broad.mit.edu	37	4	100987662	100987663	+	RNA	INS	-	-	A	rs144173765	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:100987662_100987663insA	ENST00000515026.1	+	0	729																											gtccttcccacagatgcgggaa	0.495													4	2	---	---	---	---					
LOC101929595	101929595	broad.mit.edu	37	4	108848695	108848695	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:108848695delT	ENST00000499098.1	-	0	149				RP11-286E11.1_ENST00000513071.1_RNA																							AGATACTGGCttttttaaaaa	0.353													2	4	---	---	---	---					
LOC101929595	101929595	broad.mit.edu	37	4	108895887	108895887	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:108895887delT	ENST00000513071.1	-	0	80																											aagtgtgagattttttttttc	0.388													2	4	---	---	---	---					
SEC24B-AS1	100533182	broad.mit.edu	37	4	110273145	110273146	+	RNA	DEL	AG	AG	-	rs7675344	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:110273145_110273146delAG	ENST00000499713.2	-	0	1276																											acacacacacaGAGTGAAGGCT	0.401													2	4	---	---	---	---					
LINC01378	103689918	broad.mit.edu	37	4	118525079	118525080	+	RNA	INS	-	-	A	rs61093327	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:118525079_118525080insA	ENST00000422145.3	+	0	159																											aacagtatctgaaaaaaaaaaT	0.401													4	2	---	---	---	---					
RP11-679C8.2	0	broad.mit.edu	37	4	121075189	121075190	+	RNA	DEL	GA	GA	-	rs76893731		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:121075189_121075190delGA	ENST00000511064.1	+	0	170				RP11-679C8.2_ENST00000508362.1_RNA|RP11-679C8.2_ENST00000504106.1_RNA																							cagcatttttgagaggctgagg	0.386													3	3	---	---	---	---					
RP11-679C8.2	0	broad.mit.edu	37	4	121247588	121247589	+	RNA	INS	-	-	AAAG	rs141301763	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:121247588_121247589insAAAG	ENST00000508362.1	+	0	138				RP11-679C8.2_ENST00000504106.1_RNA																							agaaagaaagaaaagaaagaaa	0.302													3	3	---	---	---	---					
RP11-679C8.2	0	broad.mit.edu	37	4	121273636	121273637	+	RNA	INS	-	-	GT	rs146362421	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:121273636_121273637insGT	ENST00000508362.1	+	0	286				RP11-679C8.2_ENST00000504106.1_RNA																							TGTGGCTTTCAgtgtgtgtgtg	0.307													4	5	---	---	---	---					
RP11-679C8.2	0	broad.mit.edu	37	4	121278924	121278925	+	RNA	INS	-	-	AT	rs142360746	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:121278924_121278925insAT	ENST00000508362.1	+	0	286				RP11-679C8.2_ENST00000504106.1_RNA																							ACTAGGAATACctctctgtctc	0.347													3	3	---	---	---	---					
RP11-381N20.1	0	broad.mit.edu	37	4	124428306	124428306	+	RNA	DEL	A	A	-	rs33940994		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:124428306delA	ENST00000508291.1	+	0	103				RP11-381N20.2_ENST00000503950.1_lincRNA																							aaaaaacaataaaaaaaaaTA	0.433													4	7	---	---	---	---					
RP11-810P8.1	0	broad.mit.edu	37	4	127967739	127967740	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:127967739_127967740insC	ENST00000506852.1	-	0	143																											tgccccctccaccccccagatt	0.381													2	4	---	---	---	---					
RP11-422J15.1	0	broad.mit.edu	37	4	130821832	130821833	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:130821832_130821833insT	ENST00000513875.1	+	0	1264																											agttcattttcttttttcagac	0.505													2	4	---	---	---	---					
RP11-422J15.1	0	broad.mit.edu	37	4	130859018	130859019	+	RNA	INS	-	-	ACTG	rs150715131	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:130859018_130859019insACTG	ENST00000513875.1	+	0	1334																											GGTGAGCTTGAACTGCAACAAC	0.386													7	2	---	---	---	---					
RP11-371F15.3	0	broad.mit.edu	37	4	139818150	139818151	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:139818150_139818151insA	ENST00000507038.1	-	0	158				RP11-371F15.3_ENST00000511951.1_RNA																							TCTGTCACCTCAAAAAAAAAAA	0.376													2	4	---	---	---	---					
RP11-284M14.1	0	broad.mit.edu	37	4	144053577	144053577	+	RNA	DEL	C	C	-	rs75550557		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:144053577delC	ENST00000507826.1	-	0	354																											AAAAAAAAAACAAAGTCACAA	0.328													3	3	---	---	---	---					
RP13-578N3.3	0	broad.mit.edu	37	4	144705355	144705356	+	RNA	INS	-	-	A	rs145106699		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:144705355_144705356insA	ENST00000499587.2	+	0	178																											gaccccatctcaaaaaaaaaaa	0.436													2	4	---	---	---	---					
RP11-18H21.3	0	broad.mit.edu	37	4	153140202	153140203	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:153140202_153140203insC	ENST00000504957.1	-	0	247																		p.?(1)									AGCATGGCTTACCCCCCCACGT	0.530													2	4	---	---	---	---					
LINC01207	100505989	broad.mit.edu	37	4	165691974	165691974	+	RNA	DEL	T	T	-	rs34670172		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:165691974delT	ENST00000507311.1	+	0	418					NR_038834.1																						CAGTACCACATTTTTTTCCTC	0.308													5	1	---	---	---	---					
RP11-310I9.1	0	broad.mit.edu	37	4	168985901	168985902	+	RNA	DEL	AG	AG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:168985901_168985902delAG	ENST00000506926.1	-	0	103																											agagagagaaagagaaggagaA	0.361													5	2	---	---	---	---					
RP11-598D14.1	0	broad.mit.edu	37	4	176386594	176386594	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:176386594delC	ENST00000506984.1	-	0	163																											ggtggaggaacggaggctgag	0.522													2	4	---	---	---	---					
RP11-624A4.1	0	broad.mit.edu	37	4	177788186	177788187	+	RNA	DEL	TT	TT	-	rs66518683		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:177788186_177788187delTT	ENST00000510203.1	-	0	128																											tatcattctatttttttttttt	0.396													3	4	---	---	---	---					
RP11-130F10.1	0	broad.mit.edu	37	4	178366217	178366218	+	RNA	INS	-	-	GGATGTT	rs139566380	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:178366217_178366218insGGATGTT	ENST00000507023.1	+	0	85_86																											ttttcctgcccggatgttgcat	0.604													4	3	---	---	---	---					
RP11-130F10.1	0	broad.mit.edu	37	4	178396183	178396191	+	RNA	DEL	TTGTTGTTG	TTGTTGTTG	-	rs72127894		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:178396183_178396191delTTGTTGTTG	ENST00000507023.1	+	0	581																											CTGCATTACTttgttgttgttgttgttgt	0.407													3	5	---	---	---	---					
RP11-404J23.1	0	broad.mit.edu	37	4	180318658	180318658	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:180318658delC	ENST00000512036.1	-	0	111																											atatgtgtgtcagttcttggt	0.294													2	4	---	---	---	---					
LINC01262	101928971	broad.mit.edu	37	4	190581055	190581055	+	RNA	DEL	T	T	-	rs11332001		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:190581055delT	ENST00000513681.1	+	0	125																											GTGATCTAAATTTTTTTTTTA	0.333													3	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190797700	190797703	+	RNA	DEL	AAAT	AAAT	-	rs111691388		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr4:190797700_190797703delAAAT	ENST00000511785.1	-	0	231																											TGAAGCTAACAAATAACACTGTCA	0.490													3	6	---	---	---	---					
LINC01511	100506791	broad.mit.edu	37	5	1372284	1372285	+	RNA	INS	-	-	CTT	rs138049853	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:1372284_1372285insCTT	ENST00000504989.1	-	0	506																											ctagagttaaccttctgctagt	0.475													5	5	---	---	---	---					
LINC01019	285577	broad.mit.edu	37	5	3524387	3524387	+	RNA	DEL	T	T	-	rs35381277		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:3524387delT	ENST00000505443.1	-	0	459					NR_033898.1																						GGGGGGtttgttttttttttt	0.463													6	3	---	---	---	---					
RP11-445O3.2	0	broad.mit.edu	37	5	4653524	4653525	+	RNA	INS	-	-	A	rs71602172		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:4653524_4653525insA	ENST00000507435.1	-	0	429																											CCCCAAGTGATAAAAAAAAAAA	0.396													3	4	---	---	---	---					
RP11-445O3.2	0	broad.mit.edu	37	5	4695907	4695907	+	RNA	DEL	A	A	-	rs35795126		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:4695907delA	ENST00000507435.1	-	0	429																											TTCATGTTGGAAAAAAAAAAa	0.279													3	4	---	---	---	---					
RP11-445O3.2	0	broad.mit.edu	37	5	4845989	4845991	+	RNA	DEL	TTG	TTG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:4845989_4845991delTTG	ENST00000507435.1	-	0	206				CTD-2161F6.1_ENST00000515656.1_lincRNA																							tttattgtacttgttgttttcgt	0.384													5	2	---	---	---	---					
LOC285696	285696	broad.mit.edu	37	5	17145492	17145493	+	RNA	DEL	GT	GT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:17145492_17145493delGT	ENST00000399760.2	-	0	1068					NR_027253.1																						GGGGTGTGTGGTGTGTGTGTGT	0.312													3	5	---	---	---	---					
CTD-2066L21.3	0	broad.mit.edu	37	5	33091670	33091670	+	RNA	DEL	T	T	-	rs75633031		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:33091670delT	ENST00000510327.1	-	0	346																											tctctgagggttttttttttt	0.378													5	2	---	---	---	---					
CTD-2116N24.1	0	broad.mit.edu	37	5	38091998	38091999	+	RNA	DEL	GT	GT	-	rs111983630		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:38091998_38091999delGT	ENST00000513039.2	+	0	233																											gtgtgtgtgcgtgtgtgtgtgt	0.470													3	3	---	---	---	---					
CTD-2116N24.1	0	broad.mit.edu	37	5	38134528	38134533	+	RNA	DEL	AAGAAC	AAGAAC	-	rs34242059	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:38134528_38134533delAAGAAC	ENST00000513039.2	+	0	233																											gaagaagaagaagaacaagaagaaga	0.413													2	4	---	---	---	---					
CTD-2288O8.1	0	broad.mit.edu	37	5	52050560	52050561	+	RNA	INS	-	-	GTGT	rs62361175	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:52050560_52050561insGTGT	ENST00000502995.1	-	0	167																											tgtgtgtgtgcgtgtgtgtgtg	0.431													4	6	---	---	---	---					
CTD-2023N9.2	0	broad.mit.edu	37	5	56904906	56904906	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:56904906delT	ENST00000513392.1	+	0	244																											aggaagtttgttttcagtaaa	0.284													2	4	---	---	---	---					
LOC101928569	101928569	broad.mit.edu	37	5	57404244	57404245	+	RNA	INS	-	-	A	rs34714054		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:57404244_57404245insA	ENST00000505861.2	-	0	391																											TCAGCTAGTCTAAAAAAAAAAA	0.337													3	5	---	---	---	---					
CTC-436P18.1	101928630	broad.mit.edu	37	5	60478765	60478766	+	RNA	INS	-	-	GTGC	rs72138010		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:60478765_60478766insGTGC	ENST00000506902.1	+	0	668																											tgtgtgtgtgtgtgtgcgtgtg	0.342													3	3	---	---	---	---					
LOC101928858	101928858	broad.mit.edu	37	5	67026101	67026101	+	RNA	DEL	T	T	-	rs140817839		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:67026101delT	ENST00000506819.1	-	0	152																		p.0?(1)									ttggtgtagcttttttttttt	0.289													2	4	---	---	---	---					
LINC01331	104310351	broad.mit.edu	37	5	73735976	73735977	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:73735976_73735977insG	ENST00000507781.1	-	0	422																											CCCTCACAGAAGGGAAATGAGG	0.460													2	4	---	---	---	---					
CTD-2316B1.1	0	broad.mit.edu	37	5	86958017	86958018	+	RNA	INS	-	-	T	rs115880659	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:86958017_86958018insT	ENST00000504287.1	+	0	72																											AAACATGATGGTTTTTTTTTCC	0.317													3	4	---	---	---	---					
LOC102546226	102546226	broad.mit.edu	37	5	87705121	87705121	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:87705121delT	ENST00000506041.2	-	0	1303				TMEM161B-AS1_ENST00000501715.2_RNA|TMEM161B-AS1_ENST00000510087.1_RNA|TMEM161B-AS1_ENST00000508015.1_RNA|TMEM161B-AS1_ENST00000501869.2_RNA|TMEM161B-AS1_ENST00000504922.1_RNA																							TCTGTTTTCCTTTTTAGTGTG	0.318													2	4	---	---	---	---					
RP11-254I22.1	0	broad.mit.edu	37	5	95398559	95398560	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:95398559_95398560insC	ENST00000507997.1	+	0	87				CTD-2337A12.1_ENST00000511775.1_RNA|CTD-2337A12.1_ENST00000502645.2_RNA																							ggtctgggtcaccccccaagtt	0.485													2	4	---	---	---	---					
CTD-2337A12.1	0	broad.mit.edu	37	5	95571799	95571800	+	RNA	INS	-	-	TCTG	rs139736696	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:95571799_95571800insTCTG	ENST00000511775.1	+	0	35				CTD-2337A12.1_ENST00000502645.2_RNA																							ctgtctgtctatctgtctgtct	0.351													3	4	---	---	---	---					
CAST	831	broad.mit.edu	37	5	95933980	95933980	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:95933980delT	ENST00000513158.1	+	0	541				CTD-2337A12.1_ENST00000502645.2_RNA																							TGAAAATAACTTTTTTTTGCC	0.478													2	4	---	---	---	---					
RP11-6N13.1	0	broad.mit.edu	37	5	103979309	103979309	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:103979309delT	ENST00000503650.1	-	0	328																											TCTGTCCTCCTTAGGTATGAG	0.368													2	4	---	---	---	---					
CTC-329D1.2	0	broad.mit.edu	37	5	139754888	139754889	+	RNA	INS	-	-	C	rs55770726	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:139754888_139754889insC	ENST00000507521.1	-	0	257																											acacacacaaaaaaaaaaaaac	0.485													3	4	---	---	---	---					
LOC101926941	101926941	broad.mit.edu	37	5	141899696	141899697	+	RNA	DEL	GT	GT	-	rs61545521		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:141899696_141899697delGT	ENST00000443800.1	+	0	243				AC005592.2_ENST00000425963.1_RNA																							attccatggggtgtgtgtgtgt	0.406													3	3	---	---	---	---					
CTC-436K13.1	0	broad.mit.edu	37	5	157604814	157604814	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:157604814delT	ENST00000522975.1	+	0	141																											acctcctggattttttttttc	0.418													2	4	---	---	---	---					
LOC102546299	102546299	broad.mit.edu	37	5	163926473	163926474	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:163926473_163926474insG	ENST00000486913.3	+	0	158				CTC-340A15.2_ENST00000522686.1_RNA|CTC-340A15.2_ENST00000522646.1_RNA|CTC-340A15.2_ENST00000519327.1_RNA|CTC-340A15.2_ENST00000522303.1_RNA|CTC-340A15.2_ENST00000519570.1_RNA|CTC-340A15.2_ENST00000517508.1_RNA|CTC-340A15.2_ENST00000524297.1_RNA|CTC-340A15.2_ENST00000522762.1_RNA|CTC-340A15.2_ENST00000523704.1_RNA																							AAAGAAAAAAAGGAAATTGTCA	0.322													2	4	---	---	---	---					
CTB-32H22.1	0	broad.mit.edu	37	5	172857558	172857560	+	RNA	DEL	TGA	TGA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr5:172857558_172857560delTGA	ENST00000523205.1	+	0	86																											Ttgatgatgttgatgatgatgat	0.424													2	4	---	---	---	---					
LY86-AS1	285780	broad.mit.edu	37	6	6528810	6528811	+	RNA	INS	-	-	AAGCCTACCTAAACATCCAGCTGACCCCTGACCCAGAGCC	rs708062	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:6528810_6528811insAAGCCTACCTAAACATCCAGCTGACCCCTGACCCAGAGCC	ENST00000435641.1	-	0	482				LY86-AS1_ENST00000429345.1_RNA|LY86-AS1_ENST00000447858.1_RNA																							gacccagagctaagcctaccta	0.495													5	4	---	---	---	---					
RP1-167F1.2	0	broad.mit.edu	37	6	19629068	19629068	+	RNA	DEL	C	C	-	rs141055374		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:19629068delC	ENST00000432171.2	-	0	366																											CACCTGAGTTCCCCCGCAGCT	0.433													5	2	---	---	---	---					
RP1-167F1.2	0	broad.mit.edu	37	6	19715327	19715328	+	RNA	INS	-	-	T	rs74670360		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:19715327_19715328insT	ENST00000432171.2	-	0	263																											TACAGAATATGTTTTTTTTTCC	0.347													2	4	---	---	---	---					
RP1-167F1.2	0	broad.mit.edu	37	6	19786668	19786669	+	RNA	INS	-	-	TA	rs145988779	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:19786668_19786669insTA	ENST00000432171.2	-	0	263																											gtgcatgtgtgtatgtgtgtac	0.322													4	2	---	---	---	---					
LINCMD1	101154644	broad.mit.edu	37	6	52015226	52015228	+	RNA	DEL	TTG	TTG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:52015226_52015228delTTG	ENST00000418518.2	-	0	238																											GTTTTGTTTTTTGTTGTTGTTGt	0.369													3	4	---	---	---	---					
LOC101927136	101927136	broad.mit.edu	37	6	53446651	53446651	+	RNA	DEL	T	T	-	rs145352148		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:53446651delT	ENST00000502390.1	-	0	122																											cttttctttcttttttttttt	0.333													3	5	---	---	---	---					
RP1-240B8.3	0	broad.mit.edu	37	6	62380184	62380184	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:62380184delA	ENST00000511849.2	-	0	224																											CACTAGAAACAAAAAAATCTT	0.303													2	4	---	---	---	---					
RP11-554D15.3	0	broad.mit.edu	37	6	75443100	75443101	+	RNA	DEL	AC	AC	-	rs10535727		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:75443100_75443101delAC	ENST00000432484.2	-	0	199																											ACCATTTCAAacacacacacac	0.312													4	6	---	---	---	---					
RP11-35J1.1	0	broad.mit.edu	37	6	77241667	77241668	+	RNA	INS	-	-	G	rs140701640	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:77241667_77241668insG	ENST00000455554.2	-	0	216																											tttgatttcacgggggggtata	0.446													2	4	---	---	---	---					
UFL1-AS1	100861530	broad.mit.edu	37	6	96811476	96811476	+	RNA	DEL	A	A	-	rs78973213		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:96811476delA	ENST00000430796.1	-	0	373																											caataaggagaaaaaaaaaaa	0.378													2	4	---	---	---	---					
UFL1-AS1	100861530	broad.mit.edu	37	6	96893357	96893358	+	RNA	INS	-	-	T	rs34054445		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:96893357_96893358insT	ENST00000430796.1	-	0	110																											GTGGTTGTTGGttttttttttt	0.371													3	6	---	---	---	---					
UFL1-AS1	100861530	broad.mit.edu	37	6	96949243	96949244	+	RNA	INS	-	-	A	rs149776874	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:96949243_96949244insA	ENST00000430796.1	-	0	110																											caagactctataaaaaaaaTCC	0.431													5	3	---	---	---	---					
LOC101927640	101927640	broad.mit.edu	37	6	112667690	112667692	+	RNA	DEL	AAA	AAA	-	rs71021877		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:112667690_112667692delAAA	ENST00000587816.1	+	0	158				RP11-506B6.6_ENST00000590673.1_RNA|RP11-506B6.6_ENST00000585611.1_RNA																							aaatcaaaacaaaaaaaaaCCCC	0.453													4	2	---	---	---	---					
RP11-437J19.1	0	broad.mit.edu	37	6	113688044	113688045	+	RNA	INS	-	-	TT	rs4035240	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:113688044_113688045insTT	ENST00000445974.1	-	0	71																											CACAGGATACATTTTTTTTTTA	0.366													3	3	---	---	---	---					
LOC101927768	101927768	broad.mit.edu	37	6	114683026	114683027	+	RNA	INS	-	-	CTGT	rs72956289	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:114683026_114683027insCTGT	ENST00000518470.1	+	0	291																											tttctttctgcctgtctttctt	0.332													3	5	---	---	---	---					
LOC101927768	101927768	broad.mit.edu	37	6	114683128	114683151	+	RNA	DEL	TCCTTCCTTCCTTCCTTCCTTCCT	TCCTTCCTTCCTTCCTTCCTTCCT	-	rs60180856		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:114683128_114683151delTCCTTCCTTCCTTCCTTCCTTCCT	ENST00000518470.1	+	0	291																											tctttctttctccttccttccttccttccttccttccttccttc	0.446													4	6	---	---	---	---					
RP11-69I8.3	0	broad.mit.edu	37	6	132374581	132374582	+	RNA	INS	-	-	GTCC	rs71783294	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:132374581_132374582insGTCC	ENST00000435287.1	+	0	309																											GATGTTCCAGTGTCCAACCAAC	0.441													5	9	---	---	---	---					
LINC00271	100131814	broad.mit.edu	37	6	135906161	135906161	+	RNA	DEL	C	C	-	rs9385728		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:135906161delC	ENST00000421378.2	+	0	147					NR_026805.1																						aaaaaaaaaacaccaaaaaaa	0.408													4	8	---	---	---	---					
STXBP5-AS1	729178	broad.mit.edu	37	6	147221369	147221369	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:147221369delT	ENST00000367477.3	-	0	695				STXBP5-AS1_ENST00000427394.1_RNA|STXBP5-AS1_ENST00000443712.1_RNA|STXBP5-AS1_ENST00000458125.1_RNA|STXBP5-AS1_ENST00000447072.1_RNA|STXBP5-AS1_ENST00000606831.1_RNA																							ctttcttttcttttttttttt	0.403													4	2	---	---	---	---					
STXBP5-AS1	729178	broad.mit.edu	37	6	147256043	147256044	+	RNA	DEL	AC	AC	-	rs72302896		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:147256043_147256044delAC	ENST00000367477.3	-	0	695				STXBP5-AS1_ENST00000427394.1_RNA|STXBP5-AS1_ENST00000458125.1_RNA|STXBP5-AS1_ENST00000447072.1_RNA|STXBP5-AS1_ENST00000431143.1_RNA																							TCACAAGAATacacacacacac	0.332													5	4	---	---	---	---					
STXBP5-AS1	729178	broad.mit.edu	37	6	147493657	147493657	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:147493657delT	ENST00000367477.3	-	0	391				STXBP5-AS1_ENST00000417502.1_RNA|STXBP5-AS1_ENST00000427394.1_RNA|RP3-337D23.3_ENST00000359838.3_lincRNA																							ATGGATACTATTTTTTTTTTT	0.328													3	2	---	---	---	---					
TULP4	56995	broad.mit.edu	37	6	158924531	158924532	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:158924531_158924532insC	ENST00000367097.3	+	13	5193_5194	c.3836_3837insC	c.(3835-3837)cccfs	p.P1279fs	TULP4_ENST00000367094.2_Intron	NM_020245.4	NP_064630.2	Q9NRJ4	TULP4_HUMAN	tubby like protein 4	1279					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			endometrium(7)|kidney(2)|large_intestine(15)|lung(17)|ovary(1)|pancreas(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	49		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CAGGGCACTCTCCCCCCAAAGC	0.614													7	179	---	---	---	---					
RP1-111C20.4	0	broad.mit.edu	37	6	159480810	159480810	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:159480810delT	ENST00000606470.1	+	0	540																											CTCTGGTGCCTTTTTTTGGGC	0.463													2	4	---	---	---	---					
LPAL2	80350	broad.mit.edu	37	6	160913224	160913224	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:160913224delA	ENST00000335388.5	-	0	508					NR_028092.1															large_intestine(1)|lung(4)	5		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		cttccattagaaaaaggtgca	0.478													2	4	---	---	---	---					
FAM120B	84498	broad.mit.edu	37	6	170627589	170627590	+	In_Frame_Ins	INS	-	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	rs137929046		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr6:170627589_170627590insCTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	ENST00000476287.1	+	2	1219_1220	c.1111_1112insCTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	c.(1111-1113)tga>CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACCtga	p.370_371insLNPGKKFPRVQT	FAM120B_ENST00000537664.1_In_Frame_Ins_p.393_394insLNPGKKFPRVQT|FAM120B_ENST00000252510.9_Intron|FAM120B_ENST00000540480.1_In_Frame_Ins_p.382_383insLNPGKKFPRVQT	NM_032448.1	NP_115824.1	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	370			D -> Y (in dbSNP:rs6917485).		cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(11)|liver(1)|lung(15)|ovary(1)|prostate(2)|skin(2)	44		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		GTATACAGATTCTGAACCCAGG	0.520													79	393	---	---	---	---					
AC073316.1	0	broad.mit.edu	37	7	3324366	3324366	+	RNA	DEL	T	T	-	rs76073408		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:3324366delT	ENST00000437354.1	-	0	224																											AAAAAAAAAATGAAAGAATCT	0.453													5	6	---	---	---	---					
ZDHHC4	55146	broad.mit.edu	37	7	6621848	6621849	+	Frame_Shift_Ins	INS	-	-	T	rs34551853		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:6621848_6621849insT	ENST00000396706.2	+	5	779_780	c.336_337insT	c.(334-339)ctttttfs	p.LF112fs	ZDHHC4_ENST00000396709.1_Frame_Shift_Ins_p.LF112fs|ZDHHC4_ENST00000405731.3_Frame_Shift_Ins_p.LF112fs|ZDHHC4_ENST00000335965.6_Frame_Shift_Ins_p.LF112fs|AC079742.4_ENST00000434951.1_RNA|ZDHHC4_ENST00000396707.2_Frame_Shift_Ins_p.LF112fs|ZDHHC4_ENST00000396713.2_Frame_Shift_Ins_p.LF112fs			Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	112						integral to membrane	acyltransferase activity|zinc ion binding	p.F115fs*3(2)		breast(2)|endometrium(2)|kidney(1)|large_intestine(3)|lung(5)|ovary(1)|pancreas(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	19		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		GTGTAAACCTGTTTTTTTTCAC	0.450													8	183	---	---	---	---					
AC004538.3	0	broad.mit.edu	37	7	11239834	11239835	+	RNA	DEL	AA	AA	-	rs71023899		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:11239834_11239835delAA	ENST00000441110.1	+	0	138				AC004538.3_ENST00000428967.1_RNA|AC004538.3_ENST00000599917.1_RNA																							actctgtctcaaaaaaaaaaaa	0.465													2	4	---	---	---	---					
AC004538.3	0	broad.mit.edu	37	7	11369183	11369186	+	RNA	DEL	TGCG	TGCG	-	rs58067291		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:11369183_11369186delTGCG	ENST00000421121.1	+	0	113				AC004538.3_ENST00000599875.1_RNA|AC004538.3_ENST00000445839.1_RNA|AC004538.3_ENST00000428967.1_RNA																							tgtgtgtgcctgcgtgcgtgtgtg	0.471													3	4	---	---	---	---					
AC005019.3	0	broad.mit.edu	37	7	13894415	13894415	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:13894415delT	ENST00000434321.1	-	0	91																											TGTTCACGCAttttttttttt	0.398													3	3	---	---	---	---					
LOC101927668	101927668	broad.mit.edu	37	7	20007393	20007394	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:20007393_20007394insT	ENST00000449573.1	-	0	462																											ttgcatcatcatttttttcact	0.371													2	4	---	---	---	---					
LINC01162	104355138	broad.mit.edu	37	7	21011808	21011811	+	RNA	DEL	TGTC	TGTC	-	rs13312213		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:21011808_21011811delTGTC	ENST00000447262.2	+	0	151																											tgtgtgtgtgtgtctgtgtctgtg	0.382													4	6	---	---	---	---					
AC011290.4	0	broad.mit.edu	37	7	39601534	39601535	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:39601534_39601535insA	ENST00000439751.2	-	0	97																											actccatctccaaaaaaaaaga	0.396													2	4	---	---	---	---					
AC004869.2	0	broad.mit.edu	37	7	46519984	46519985	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:46519984_46519985insG	ENST00000440935.1	-	0	333																											ttctgggtggagggggggggtc	0.554													3	6	---	---	---	---					
AC004901.1	0	broad.mit.edu	37	7	47068684	47068685	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:47068684_47068685insA	ENST00000433337.1	-	0	237				AC004870.3_ENST00000412996.1_RNA																							gactctgtctcaaaaaaaaaaa	0.485													3	6	---	---	---	---					
RP5-945F2.2	0	broad.mit.edu	37	7	67571873	67571873	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:67571873delA	ENST00000424888.2	+	0	103																											AAAAATAGAGAAAAAAAAAAT	0.343													4	4	---	---	---	---					
RP5-945F2.3	0	broad.mit.edu	37	7	67646444	67646456	+	RNA	DEL	AGAAGGAAGGAAG	AGAAGGAAGGAAG	-	rs76933500		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:67646444_67646456delAGAAGGAAGGAAG	ENST00000446187.1	-	0	444																											aaggaaggaaagaaggaaggaaggaaggaaaga	0.451													3	6	---	---	---	---					
RP5-945F2.3	0	broad.mit.edu	37	7	67659957	67659957	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:67659957delA	ENST00000446187.1	-	0	317																											gactccatctaaaaaaaaaaa	0.458													6	1	---	---	---	---					
RP5-945F2.3	0	broad.mit.edu	37	7	67694058	67694059	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:67694058_67694059insA	ENST00000446187.1	-	0	317																											atccctgaagcaaaaatcaata	0.356													4	5	---	---	---	---					
RP11-3P22.2	0	broad.mit.edu	37	7	68881194	68881195	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:68881194_68881195insA	ENST00000435148.1	-	0	156																											ACTAGGGCTCTAAAAATCTAAA	0.361													2	4	---	---	---	---					
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	RNA	DEL	AGAGCTCC	AGAGCTCC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:74300557_74300564delAGAGCTCC	ENST00000423186.1	-	0	573_580							P0CL84	ST3L2_HUMAN								nucleus	binding	p.E82fs*32(2)		breast(1)|central_nervous_system(1)|large_intestine(1)|lung(1)|pancreas(1)	5						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													4	9	---	---	---	---					
RP11-467H10.2	0	broad.mit.edu	37	7	76678775	76678775	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:76678775delT	ENST00000459742.1	+	0	58																											GCAGAGTGCCTGTCTTTCACA	0.423													4	2	---	---	---	---					
STEAP2-AS1	100874100	broad.mit.edu	37	7	89608503	89608504	+	RNA	INS	-	-	T	rs149740720	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:89608503_89608504insT	ENST00000478318.2	-	0	424																											catgaagaagataaaaAAAAAA	0.351													4	4	---	---	---	---					
STEAP2-AS1	100874100	broad.mit.edu	37	7	89612812	89612812	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:89612812delG	ENST00000478318.2	-	0	424																											AATGTAAAGAGAGGCTTAAAA	0.373													2	4	---	---	---	---					
RP11-142A5.1	0	broad.mit.edu	37	7	91177825	91177826	+	RNA	DEL	TA	TA	-	rs146480054		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:91177825_91177826delTA	ENST00000456952.1	-	0	112																											CTCAGTACTCTATGAGGGCAAA	0.337													7	6	---	---	---	---					
MTERF1	7978	broad.mit.edu	37	7	91478309	91478310	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:91478309_91478310insA	ENST00000454222.1	-	0	93																											GTTCTACTCAGAAAAAAAAAAA	0.416													2	4	---	---	---	---					
PEX1	5189	broad.mit.edu	37	7	92134189	92134190	+	Frame_Shift_Ins	INS	-	-	T	rs146228151		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:92134189_92134190insT	ENST00000248633.4	-	12	2022_2023	c.1927_1928insA	c.(1927-1929)cctfs	p.P643fs	PEX1_ENST00000541751.1_Frame_Shift_Ins_p.P60fs|PEX1_ENST00000438045.1_Frame_Shift_Ins_p.P321fs|PEX1_ENST00000428214.1_Intron	NM_000466.2	NP_000457.1	O43933	PEX1_HUMAN	peroxisomal biogenesis factor 1	643			Missing (in NALD).		microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(6)|lung(17)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	41	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CACCTCTAGGGTTTTTTGTATG	0.446													7	368	---	---	---	---					
PLOD3	8985	broad.mit.edu	37	7	100855926	100855927	+	Frame_Shift_Ins	INS	-	-	G	rs138002558	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:100855926_100855927insG	ENST00000223127.3	-	9	1287_1288	c.889_890insC	c.(889-891)ggtfs	p.G297fs		NM_001084.4	NP_001075.1	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	297					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding	p.R297fs*61(2)		NS(1)|breast(2)|central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(5)|lung(12)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	31	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	CAGAAACACCCGGGGGGGAGGC	0.639													7	95	---	---	---	---					
AC003088.1	0	broad.mit.edu	37	7	110111395	110111396	+	RNA	INS	-	-	AA	rs146269121	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:110111395_110111396insAA	ENST00000435466.1	-	0	327																											aagaaagaaagaaagaaaggaa	0.421													2	4	---	---	---	---					
LINC01393	102724386	broad.mit.edu	37	7	114765949	114765950	+	RNA	INS	-	-	AT	rs10263251	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:114765949_114765950insAT	ENST00000435981.1	+	0	768_769				AC068610.5_ENST00000419883.1_RNA																							atgtttgataattttttttttt	0.317													2	4	---	---	---	---					
RP5-921G16.1	0	broad.mit.edu	37	7	123780432	123780439	+	RNA	DEL	AAGCCAGC	AAGCCAGC	-	rs2896341		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:123780432_123780439delAAGCCAGC	ENST00000484322.1	+	0	168																											atctcacctgaagccagcaagtctcagt	0.476													4	2	---	---	---	---					
POT1-AS1	401398	broad.mit.edu	37	7	124619332	124619333	+	RNA	INS	-	-	A	rs35807639		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:124619332_124619333insA	ENST00000453342.1	+	0	202																											gactctctctcaaaaaaaaaaa	0.450													4	4	---	---	---	---					
LOC101928283	101928283	broad.mit.edu	37	7	125010812	125010813	+	RNA	INS	-	-	G	rs34620687	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:125010812_125010813insG	ENST00000424515.2	+	0	1189																											aaaaaaaatgcgggtgtggtgt	0.470													6	4	---	---	---	---					
RP11-155G14.5	0	broad.mit.edu	37	7	128104719	128104722	+	RNA	DEL	GAGG	GAGG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:128104719_128104722delGAGG	ENST00000493710.1	+	0	186																											gagagaaaGAGagggagggaggga	0.529													4	4	---	---	---	---					
LINC-PINT	378805	broad.mit.edu	37	7	130591859	130591860	+	RNA	INS	-	-	A	rs57872950		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:130591859_130591860insA	ENST00000432045.1	-	0	403				AC016831.7_ENST00000447430.1_RNA	NR_034120.1																						AGTTACACAGGAAAAAAAAAAA	0.332													5	3	---	---	---	---					
LOC349160	349160	broad.mit.edu	37	7	136435658	136435659	+	RNA	INS	-	-	TG	rs61068929	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:136435658_136435659insTG	ENST00000586239.1	-	0	466				AC009264.1_ENST00000593789.1_RNA|AC009264.1_ENST00000597642.1_RNA																							gtgtgtgtgtctgtgtgtgtgt	0.342													3	4	---	---	---	---					
C7orf13	129790	broad.mit.edu	37	7	156282373	156282380	+	RNA	DEL	GATAGATG	GATAGATG	-	rs1569074	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:156282373_156282380delGATAGATG	ENST00000447933.1	-	0	300																											tagatagatagatagatggatgTTGCAG	0.389													3	4	---	---	---	---					
C7orf13	129790	broad.mit.edu	37	7	156328641	156328642	+	RNA	INS	-	-	T	rs138681785	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:156328641_156328642insT	ENST00000447933.1	-	0	300																											CTTCAGCCttgttttttttgtt	0.500													12	3	---	---	---	---					
C7orf13	129790	broad.mit.edu	37	7	156349647	156349648	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:156349647_156349648insA	ENST00000447933.1	-	0	300																											actaaaaatacaaaaaaaatta	0.490													5	5	---	---	---	---					
LOC101927914	101927914	broad.mit.edu	37	7	157282347	157282348	+	RNA	INS	-	-	A	rs61237604		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr7:157282347_157282348insA	ENST00000444158.1	+	0	2547																											gattccatctcaaaaaaaaaaa	0.421													3	3	---	---	---	---					
FAM66D	100132923	broad.mit.edu	37	8	12000168	12000169	+	RNA	DEL	TG	TG	-	rs59475926		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:12000168_12000169delTG	ENST00000434078.2	+	0	608					NR_027425.1																						ttgttttttttgttgttgttgt	0.411													2	4	---	---	---	---					
FAM66D	100132923	broad.mit.edu	37	8	12000169	12000169	+	RNA	DEL	G	G	-	rs59475926		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:12000169delG	ENST00000434078.2	+	0	608					NR_027425.1																						tgttttttttgttgttgttgt	0.408													3	3	---	---	---	---					
RP11-11N9.4	0	broad.mit.edu	37	8	32863244	32863244	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:32863244delA	ENST00000500843.2	+	0	139																											TTGTTTCCCCAAAAAAAAAAA	0.368													2	4	---	---	---	---					
RP11-527N22.1	0	broad.mit.edu	37	8	37188467	37188468	+	RNA	INS	-	-	CA	rs147600669	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:37188467_37188468insCA	ENST00000518765.1	-	0	434_435																											gcgcacgcgctcacacacacac	0.579													9	10	---	---	---	---					
LOC101929415	101929415	broad.mit.edu	37	8	57415044	57415044	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:57415044delT	ENST00000518662.1	+	0	827				RP11-17A4.2_ENST00000522511.1_RNA																							AAACATTTCCTTTTTTTTTTT	0.373													2	4	---	---	---	---					
LOC101929415	101929415	broad.mit.edu	37	8	57441912	57441912	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:57441912delA	ENST00000518662.1	+	0	827				LINC00968_ENST00000499425.1_lincRNA																							AAGTGCTGGGAAGGAAAGAGT	0.423													2	4	---	---	---	---					
CTD-3046C4.1	0	broad.mit.edu	37	8	64317059	64317059	+	RNA	DEL	T	T	-	rs11357989		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:64317059delT	ENST00000521221.1	-	0	694																											TAGACCATCATTTTTTTTTTT	0.338													4	3	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	64935943	64935943	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:64935943delA	ENST00000524360.1	-	0	195				RP11-32K4.1_ENST00000523191.1_RNA|RP11-32K4.1_ENST00000521958.1_RNA																							caaaataggtaaaaaaaaatg	0.274													2	4	---	---	---	---					
LOC102724623	102724623	broad.mit.edu	37	8	65141886	65141891	+	RNA	DEL	ACACAC	ACACAC	-	rs59511084		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:65141886_65141891delACACAC	ENST00000524360.1	-	0	128				RP11-32K4.1_ENST00000521958.1_RNA|RP11-32K4.1_ENST00000520365.1_RNA|RP11-32K4.1_ENST00000523191.1_RNA																							ctatgattAAacacacacacacacac	0.374													7	2	---	---	---	---					
RP11-758M4.4	0	broad.mit.edu	37	8	75733611	75733612	+	RNA	INS	-	-	T	rs11285192	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:75733611_75733612insT	ENST00000518128.1	-	0	192				RP11-758M4.4_ENST00000523860.1_RNA																							tgcccagccCATTTTTTTTTTC	0.460													5	3	---	---	---	---					
RP11-758M4.4	0	broad.mit.edu	37	8	75736452	75736452	+	RNA	DEL	T	T	-	rs36106413		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:75736452delT	ENST00000518128.1	-	0	192				RP11-758M4.4_ENST00000523860.1_RNA																							ACCCACAGTCTTTTTTTTTTT	0.338													2	4	---	---	---	---					
LOC101927040	101927040	broad.mit.edu	37	8	80698572	80698573	+	RNA	INS	-	-	A	rs143576767	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:80698572_80698573insA	ENST00000502766.2	-	0	436				RP11-27N21.3_ENST00000607172.1_lincRNA																							tttctggttacaaaaacatcaa	0.312													4	4	---	---	---	---					
RP11-941H19.3	0	broad.mit.edu	37	8	81183662	81183663	+	RNA	INS	-	-	G	rs5892721	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:81183662_81183663insG	ENST00000522044.1	+	0	79																											tacagttaacagtactttcaca	0.347													3	3	---	---	---	---					
LOC100996348	100996348	broad.mit.edu	37	8	86368517	86368517	+	RNA	DEL	T	T	-	rs3839863		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:86368517delT	ENST00000521761.1	-	0	400				RP11-317J10.2_ENST00000517697.1_RNA																							CATGAGCTACTGGGAGCTGTG	0.453													4	7	---	---	---	---					
AF121898.3	0	broad.mit.edu	37	8	88731166	88731166	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:88731166delA	ENST00000517711.1	-	0	69				AF121898.3_ENST00000518494.1_RNA|AF121898.3_ENST00000440763.2_RNA																							actccatctcaaaaaaaaaaa	0.443													4	2	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89427965	89427969	+	RNA	DEL	AATTA	AATTA	-	rs112308886		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:89427965_89427969delAATTA	ENST00000521433.1	+	0	179				RP11-586K2.1_ENST00000523254.1_RNA																							acaaactgagaattaaattaaagtc	0.424													3	4	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89472114	89472114	+	RNA	DEL	A	A	-	rs35696387		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:89472114delA	ENST00000521433.1	+	0	179				RP11-586K2.1_ENST00000523254.1_RNA																							tgaagatgagaaaaaaaaaac	0.368													3	3	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92859480	92859481	+	RNA	INS	-	-	A	rs145660360	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:92859480_92859481insA	ENST00000518416.1	-	0	285																											agtcagaggagaaaaaaaaaga	0.337													3	4	---	---	---	---					
RP11-587H10.1	0	broad.mit.edu	37	8	93514981	93514982	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:93514981_93514982insT	ENST00000521955.1	-	0	209																											CAGAGCCCACCTTTTTGTATTA	0.356													2	4	---	---	---	---					
RP11-100L22.1	0	broad.mit.edu	37	8	93683954	93683977	+	RNA	DEL	GTGTGTGTGTGTGTGTGTGTGTGT	GTGTGTGTGTGTGTGTGTGTGTGT	-	rs72129134		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:93683954_93683977delGTGTGTGTGTGTGTGTGTGTGTGT	ENST00000521307.1	+	0	80																											tgaggtaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt	0.415													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94227129	94227129	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:94227129delA	ENST00000520096.1	-	0	579				LINC00535_ENST00000520513.1_RNA|LINC00535_ENST00000517785.1_RNA																							TGTGAAAAGGAAAAAAAAAAA	0.363													3	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94347877	94347880	+	RNA	DEL	TGTA	TGTA	-	rs277775		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:94347877_94347880delTGTA	ENST00000520096.1	-	0	469																											tgtgtgtgtgtgtatgtgtgtgtg	0.270													3	3	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94697222	94697223	+	RNA	INS	-	-	A	rs55704947		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:94697222_94697223insA	ENST00000501400.1	-	0	498					NR_033858.1																						atcctgtctccaaaaaaaaaaa	0.475													2	4	---	---	---	---					
KB-1184D12.1	0	broad.mit.edu	37	8	95110479	95110479	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:95110479delG	ENST00000522743.1	-	0	180																											CTTCAACACAGGCCACACTCA	0.493													6	4	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96482747	96482748	+	RNA	INS	-	-	TT	rs77776040	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:96482747_96482748insTT	ENST00000521905.1	+	0	281																											CTGCCTGACTCGTCTTAACCAT	0.386													2	4	---	---	---	---					
RP11-410L14.2	0	broad.mit.edu	37	8	100015836	100015837	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:100015836_100015837insG	ENST00000521696.1	-	0	176																											AATCTTACAAAGGGGGGTGCTA	0.376													8	222	---	---	---	---					
ODF1	4956	broad.mit.edu	37	8	103572984	103572992	+	In_Frame_Del	DEL	TGCAGCCCC	TGCAGCCCC	-	rs3018444	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:103572984_103572992delTGCAGCCCC	ENST00000285402.3	+	2	781_789	c.625_633delTGCAGCCCC	c.(625-633)del	p.CSP215del	ODF1_ENST00000518835.1_Splice_Site_p.3_splice	NM_024410.3	NP_077721.2	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	215	C-X-P repeat region.				cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			NS(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(6)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	20	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			CACTTCTCCTtgcagcccctgcagcccct	0.584													7	65	---	---	---	---					
RP11-1084E5.1	0	broad.mit.edu	37	8	110048779	110048779	+	RNA	DEL	G	G	-	rs75415841		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:110048779delG	ENST00000522244.1	-	0	264																											ggaggccgaaggggggggcgg	0.502													3	5	---	---	---	---					
LOC101927459	101927459	broad.mit.edu	37	8	112003786	112003786	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:112003786delT	ENST00000524283.1	-	0	523																											TGATCACTTATTTTTTTCTCA	0.269													2	4	---	---	---	---					
RP11-369K17.1	0	broad.mit.edu	37	8	121966033	121966036	+	RNA	DEL	GTGT	GTGT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:121966033_121966036delGTGT	ENST00000517739.1	+	0	95																											TATTTTTTTCgtgtgtgtgtgtgt	0.377													2	4	---	---	---	---					
RP11-369K17.1	0	broad.mit.edu	37	8	122035579	122035579	+	RNA	DEL	A	A	-	rs34519866		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:122035579delA	ENST00000517739.1	+	0	95																											ggaattttagaagagagcaaa	0.284													5	1	---	---	---	---					
RP11-3G20.2	0	broad.mit.edu	37	8	122710434	122710435	+	RNA	INS	-	-	AGAG	rs146236760	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:122710434_122710435insAGAG	ENST00000458107.3	+	0	251																											cactctcacacagagtattttt	0.297													3	4	---	---	---	---					
RP11-398G24.2	0	broad.mit.edu	37	8	122988117	122988117	+	RNA	DEL	T	T	-	rs112117847		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:122988117delT	ENST00000523792.1	-	0	281																											GATGATGGCATTTTTTTGTCC	0.433													4	3	---	---	---	---					
CASC8	727677	broad.mit.edu	37	8	128461896	128461896	+	RNA	DEL	A	A	-	rs10719294		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:128461896delA	ENST00000502082.1	-	0	1041				CASC8_ENST00000502056.1_RNA																							ACTGAGGCCCAAAAAAATGTG	0.453													8	1	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130612307	130612307	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:130612307delT	ENST00000446592.3	-	0	312																											tgatcgtttcttttgctgtgc	0.353													2	4	---	---	---	---					
RP11-513H8.1	0	broad.mit.edu	37	8	135332115	135332115	+	RNA	DEL	A	A	-	rs34812818		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:135332115delA	ENST00000523317.1	-	0	84																											TGTTCCGTTCAAAAAAAAAAA	0.403													4	5	---	---	---	---					
LINC01591	286094	broad.mit.edu	37	8	136311627	136311627	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:136311627delA	ENST00000522279.1	+	0	947					NR_026706.1																						tcttatgtataaatttgtctc	0.323													2	4	---	---	---	---					
RP11-431D12.1	0	broad.mit.edu	37	8	137514200	137514201	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:137514200_137514201insT	ENST00000523232.1	+	0	55																											cttgtagtttgttttttgattt	0.282													2	4	---	---	---	---					
MROH5	389690	broad.mit.edu	37	8	142468704	142468705	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr8:142468704_142468705insA	ENST00000430863.1	-	0	2558					NM_207414.2	NP_997297.2			maestro heat-like repeat family member 5																		aataagcatttaaaaatgtgaa	0.337													2	4	---	---	---	---					
VLDLR-AS1	401491	broad.mit.edu	37	9	2525943	2525944	+	RNA	DEL	TC	TC	-	rs79569159		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:2525943_2525944delTC	ENST00000416826.2	-	0	434																											tttctctctttctctctctctc	0.450													2	4	---	---	---	---					
RFX3-AS1	101929302	broad.mit.edu	37	9	3538743	3538743	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:3538743delC	ENST00000423112.2	+	0	55																											atttctttctcctggccgatt	0.438													2	4	---	---	---	---					
RFX3-AS1	101929302	broad.mit.edu	37	9	3602696	3602704	+	RNA	DEL	AATTTAGTC	AATTTAGTC	-	rs78412394		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:3602696_3602704delAATTTAGTC	ENST00000423112.2	+	0	348																											TATTTTACCTAATTTAGTCTCAAATATCA	0.287													4	2	---	---	---	---					
CDKN2B-AS1	100048912	broad.mit.edu	37	9	22088440	22088441	+	RNA	INS	-	-	CA	rs141830300	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:22088440_22088441insCA	ENST00000428597.1	+	0	2448				CDKN2B-AS1_ENST00000585267.1_RNA|CDKN2B-AS1_ENST00000421632.1_RNA|CDKN2B-AS1_ENST00000584637.1_RNA|CDKN2B-AS1_ENST00000584816.1_RNA|CDKN2B-AS1_ENST00000577551.1_RNA|CDKN2B-AS1_ENST00000581051.1_RNA|CDKN2B-AS1_ENST00000584020.1_RNA|CDKN2B-AS1_ENST00000582072.1_RNA|CDKN2B-AS1_ENST00000580576.1_RNA	NR_003529.3																						AAATGTGCAAGcacacacacac	0.426													4	5	---	---	---	---					
LINC01239	441389	broad.mit.edu	37	9	22804675	22804688	+	RNA	DEL	ACACACACACATAG	ACACACACACATAG	-	rs60703328		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:22804675_22804688delACACACACACATAG	ENST00000436786.1	+	0	524					NR_038977.1																						acgcacacgcacacacacacatagacacacacac	0.379													3	5	---	---	---	---					
RP11-311H10.4	0	broad.mit.edu	37	9	33407385	33407386	+	RNA	DEL	GT	GT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:33407385_33407386delGT	ENST00000450864.1	+	0	286																											GGATGGACAGgtgtgtgtgtgt	0.470													7	17	---	---	---	---					
LINC01410	103352539	broad.mit.edu	37	9	66465028	66465029	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:66465028_66465029insA	ENST00000424345.1	+	0	224																											GCAGGCTGAGGGATCCAAGGGG	0.426													7	19	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68406963	68406964	+	RNA	INS	-	-	CT	rs150304681	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:68406963_68406964insCT	ENST00000417843.2	-	0	224																											agagagaaagactgtatctttg	0.470													5	3	---	---	---	---					
LINC01492	101928496	broad.mit.edu	37	9	106056042	106056043	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:106056042_106056043insT	ENST00000411575.1	-	0	357																											ccaagctaatgtttccattttc	0.322													2	4	---	---	---	---					
LOC340512	340512	broad.mit.edu	37	9	109808735	109808735	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:109808735delT	ENST00000439901.1	-	0	455																											TCCCAAGGCCTTTGGGTATGT	0.522													2	4	---	---	---	---					
ZNF883	169834	broad.mit.edu	37	9	115771795	115771795	+	RNA	DEL	T	T	-	rs143875926		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:115771795delT	ENST00000427548.1	-	0	165							P0CG24	ZN883_HUMAN	zinc finger protein 883						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding										ctcatattccttttttttttt	0.493													3	5	---	---	---	---					
RP11-18B16.2	0	broad.mit.edu	37	9	116430012	116430012	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:116430012delT	ENST00000428292.1	+	0	273																											gcaccaggACttttttttttt	0.537													3	5	---	---	---	---					
LOC101929116	101929116	broad.mit.edu	37	9	129036177	129036178	+	RNA	DEL	AA	AA	-	rs139735711		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr9:129036177_129036178delAA	ENST00000419853.1	-	0	72																											accctgtctcaaaaaaaaaaaa	0.411													2	4	---	---	---	---					
RP11-69C17.3	0	broad.mit.edu	37	10	2209242	2209245	+	RNA	DEL	TACT	TACT	-	rs147010340		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:2209242_2209245delTACT	ENST00000421077.1	+	0	74																											GATCAGAAAATACTTACAGGAGGA	0.348													3	4	---	---	---	---					
RP11-69C17.4	0	broad.mit.edu	37	10	2230423	2230424	+	RNA	INS	-	-	GTAT	rs141598709	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:2230423_2230424insGTAT	ENST00000418524.2	-	0	13																											ACTCCTACTTCgtatgtatgta	0.327													6	9	---	---	---	---					
LINC00708	100507143	broad.mit.edu	37	10	8308218	8308218	+	RNA	DEL	T	T	-	rs146052202		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:8308218delT	ENST00000428165.1	-	0	269																											TGTATCTACCTTTTTTTTTTT	0.378													2	4	---	---	---	---					
RP11-271F18.1	0	broad.mit.edu	37	10	10407219	10407220	+	RNA	INS	-	-	A	rs147896587	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:10407219_10407220insA	ENST00000455871.1	-	0	265																											ATATCTAGAAGAAAAAAAATCA	0.302													2	4	---	---	---	---					
FRMD4A	55691	broad.mit.edu	37	10	13696451	13696452	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:13696451_13696452insG	ENST00000357447.2	-	23	3382_3383	c.3014_3015insC	c.(3013-3015)cagfs	p.Q1005fs	FRMD4A_ENST00000378503.1_Frame_Shift_Ins_p.Q1005fs|FRMD4A_ENST00000358621.4_Frame_Shift_Ins_p.Q990fs	NM_018027.3	NP_060497.3	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	1005	Ser-rich.					cytoplasm|cytoskeleton	binding			breast(4)|endometrium(9)|kidney(2)|large_intestine(11)|lung(9)|ovary(2)|pancreas(1)|prostate(2)|skin(1)	41						GGGGGCTGCTTGGGGGGGTGGC	0.535													7	154	---	---	---	---					
LOC101929475	101929475	broad.mit.edu	37	10	33337552	33337555	+	RNA	DEL	TGTG	TGTG	-	rs57793576		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:33337552_33337555delTGTG	ENST00000450890.1	+	0	287																											ggtgtgtgtctgtgtgtgtgtgtg	0.358													2	4	---	---	---	---					
CCNYL2	414194	broad.mit.edu	37	10	42919101	42919102	+	RNA	INS	-	-	T	rs67340791		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:42919101_42919102insT	ENST00000483242.3	-	0	955					NR_103829.1				cyclin Y-like 2											breast(2)|endometrium(1)|lung(3)|ovary(1)	7						taatttcttaattttttttttt	0.490													2	4	---	---	---	---					
TMEM72-AS1	220980	broad.mit.edu	37	10	45355915	45355916	+	RNA	DEL	AC	AC	-	rs72012697		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:45355915_45355916delAC	ENST00000450287.2	-	0	244					NR_033842.1																						GTacacacaaacacacacacac	0.446													4	5	---	---	---	---					
TMEM72-AS1	220980	broad.mit.edu	37	10	45374258	45374259	+	RNA	INS	-	-	C	rs143070264	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:45374258_45374259insC	ENST00000450287.2	-	0	244					NR_033842.1																						CGTTGGAGGAGCAGAGAGGAAA	0.658													4	6	---	---	---	---					
TMEM72-AS1	220980	broad.mit.edu	37	10	45390042	45390043	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:45390042_45390043insC	ENST00000450287.2	-	0	244					NR_033842.1																						TGCAGCAAGATCCCCCCCAGGC	0.594													2	4	---	---	---	---					
LINC00842	643650	broad.mit.edu	37	10	47106937	47106938	+	RNA	INS	-	-	A	rs66655390		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:47106937_47106938insA	ENST00000422732.2	-	0	435					NR_033957.1																						TACTCAGAAGGAAAGGCATGTG	0.455													3	5	---	---	---	---					
NUTM2B-AS1	101060691	broad.mit.edu	37	10	81524019	81524019	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:81524019delT	ENST00000601369.1	-	0	59				RP11-119F19.2_ENST00000600376.1_RNA|RP11-119F19.2_ENST00000596088.1_RNA																							ATTTTCTAGATTTTTTTTGCA	0.323													3	6	---	---	---	---					
LRIT1	26103	broad.mit.edu	37	10	86001143	86001144	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:86001143_86001144insG	ENST00000372105.3	-	1	73_74	c.52_53insC	c.(52-54)ggcfs	p.G18fs		NM_015613.2	NP_056428.1	Q9P2V4	LRIT1_HUMAN	leucine-rich repeat, immunoglobulin-like and transmembrane domains 1	18						integral to endoplasmic reticulum membrane				breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(13)|skin(1)	23						GCCCCGGGCCTGGGGGGGCCAC	0.673													7	62	---	---	---	---					
LINC01520	101929684	broad.mit.edu	37	10	87218110	87218110	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:87218110delC	ENST00000441457.1	+	0	1106																											CCACAGAGTGCCCTGAGGGGC	0.532													2	4	---	---	---	---					
LOC101926942	101926942	broad.mit.edu	37	10	92237077	92237077	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:92237077delA	ENST00000422206.1	+	0	146				RP11-15K3.1_ENST00000418379.1_lincRNA																							gaaggaactgaagctctggca	0.423													5	2	---	---	---	---					
MIR3663HG	101927704	broad.mit.edu	37	10	118926377	118926378	+	RNA	INS	-	-	T	rs72028777		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr10:118926377_118926378insT	ENST00000419373.2	-	0	200																											cagtttctttgttttttttttt	0.525													4	5	---	---	---	---					
TSSC2	650368	broad.mit.edu	37	11	3417557	3417557	+	RNA	DEL	T	T	-	rs143298965		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:3417557delT	ENST00000529482.1	+	0	287																											ccgtgtttaattttttttttt	0.473													2	4	---	---	---	---					
RP11-115J23.1	0	broad.mit.edu	37	11	28742823	28742824	+	RNA	INS	-	-	TGAT	rs145519012		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:28742823_28742824insTGAT	ENST00000513853.1	+	0	220																											agatagatagatgatagataga	0.332													4	5	---	---	---	---					
RP11-115J23.1	0	broad.mit.edu	37	11	28824590	28824609	+	RNA	DEL	TATTCCACAGATGGTATAGG	TATTCCACAGATGGTATAGG	-	rs75599212		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:28824590_28824609delTATTCCACAGATGGTATAGG	ENST00000513853.1	+	0	304																											acaatttagatattccacagatggtataggtattccacag	0.368													5	7	---	---	---	---					
RP11-115J23.1	0	broad.mit.edu	37	11	28912007	28912007	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:28912007delA	ENST00000513853.1	+	0	304																											tccttcaaagaaaaacttcgc	0.333													2	4	---	---	---	---					
RP11-460B17.3	0	broad.mit.edu	37	11	29499604	29499605	+	RNA	INS	-	-	CTTA	rs71973379	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:29499604_29499605insCTTA	ENST00000525097.1	-	0	153																											CTTTATGAAAGCTGTTTTTATG	0.381													3	2	---	---	---	---					
CTD-3138F19.1	0	broad.mit.edu	37	11	29824212	29824213	+	RNA	INS	-	-	C	rs2571363		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:29824212_29824213insC	ENST00000530249.1	+	0	232																											AAAAAAAAAAAACACACACACA	0.386													3	5	---	---	---	---					
RP11-646J21.3	0	broad.mit.edu	37	11	33826481	33826482	+	RNA	INS	-	-	CACAC	rs71783518	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:33826481_33826482insCACAC	ENST00000534666.1	+	0	107																											CAACAACAACAacacacacaca	0.366													2	4	---	---	---	---					
RP11-148I19.1	0	broad.mit.edu	37	11	42123124	42123124	+	RNA	DEL	T	T	-	rs58080840		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:42123124delT	ENST00000534059.1	-	0	220																											CTGGCACCTATTTTTTTTATA	0.368													2	4	---	---	---	---					
CTD-2210P24.6	0	broad.mit.edu	37	11	45844872	45844874	+	RNA	DEL	AAA	AAA	-	rs75727732		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:45844872_45844874delAAA	ENST00000534128.1	+	0	56																											actctgtctcaaaaaaaaaaaaa	0.448													2	4	---	---	---	---					
C11orf49	79096	broad.mit.edu	37	11	47074000	47074001	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:47074000_47074001insC	ENST00000395460.2	+	3	249_250	c.211_212insC	c.(211-213)cccfs	p.P71fs	C11orf49_ENST00000527268.1_3'UTR|C11orf49_ENST00000536126.1_5'UTR|C11orf49_ENST00000278460.7_Frame_Shift_Ins_p.P71fs|C11orf49_ENST00000378615.3_Frame_Shift_Ins_p.P71fs|C11orf49_ENST00000543718.1_Intron|C11orf49_ENST00000378618.2_Frame_Shift_Ins_p.P71fs	NM_001003676.1	NP_001003676.1	Q9H6J7	CK049_HUMAN	chromosome 11 open reading frame 49	71										central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(5)|skin(1)	11						CGTCCAAGCCACCCCCCACAAT	0.441													8	259	---	---	---	---					
LOC440040	440040	broad.mit.edu	37	11	49649382	49649382	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:49649382delT	ENST00000527477.1	+	0	1062																											ttcttttttatttttttttta	0.378													2	4	---	---	---	---					
FLJ42102	399923	broad.mit.edu	37	11	71126220	71126221	+	RNA	INS	-	-	ATGG	rs112341628	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:71126220_71126221insATGG	ENST00000331301.4	-	0	125					NR_038862.1																						gtggtaagtccatggatggatg	0.475													3	6	---	---	---	---					
LOC101928989	101928989	broad.mit.edu	37	11	81720428	81720428	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:81720428delT	ENST00000500502.1	-	0	940																											ACAAAGCCACTTACATTTTGT	0.348													2	4	---	---	---	---					
LOC101928989	101928989	broad.mit.edu	37	11	81947209	81947209	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:81947209delA	ENST00000500502.1	-	0	431																											tattagggccaaaaatattct	0.284													2	4	---	---	---	---					
DISC1FP1	101929222	broad.mit.edu	37	11	90383530	90383531	+	RNA	INS	-	-	G	rs148293986	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:90383530_90383531insG	ENST00000562678.1	+	0	185																											caagacagtgtgtgactcctta	0.332													7	3	---	---	---	---					
DISC1FP1	101929222	broad.mit.edu	37	11	90504069	90504070	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:90504069_90504070insA	ENST00000562678.1	+	0	185																											tatagatacagaaaaaaaatac	0.317													2	4	---	---	---	---					
WTAPP1	100288077	broad.mit.edu	37	11	102688229	102688230	+	RNA	DEL	TT	TT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:102688229_102688230delTT	ENST00000525739.2	+	0	682					NR_038390.1																						tctaagtctctttgtaggtctc	0.361													6	4	---	---	---	---					
RP11-563P16.1	0	broad.mit.edu	37	11	103662953	103662956	+	RNA	DEL	AAAC	AAAC	-	rs35886042		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:103662953_103662956delAAAC	ENST00000533459.1	-	0	127																											cgcacacacaaaacaaacaaacaa	0.338													5	4	---	---	---	---					
RP11-708B6.2	0	broad.mit.edu	37	11	109271725	109271726	+	RNA	DEL	AC	AC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:109271725_109271726delAC	ENST00000532992.1	-	0	427																											AGGGCAGTCTACACCCATTCCC	0.396													6	4	---	---	---	---					
RP11-839D17.3	0	broad.mit.edu	37	11	113177652	113177653	+	RNA	INS	-	-	A	rs11368983	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:113177652_113177653insA	ENST00000526487.1	-	0	95				RP11-839D17.3_ENST00000533504.1_RNA																							GTCCTCAGGAGAAAAAAAAATA	0.426													2	4	---	---	---	---					
RP11-136I14.5	0	broad.mit.edu	37	11	115453713	115453726	+	RNA	DEL	TCTTCCCTTACTAG	TCTTCCCTTACTAG	-	rs140291302		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:115453713_115453726delTCTTCCCTTACTAG	ENST00000306533.8	+	0	213																											ttgcgggcgttcttcccttactagtccagtgttc	0.547													3	4	---	---	---	---					
RP11-136I14.5	0	broad.mit.edu	37	11	115470356	115470359	+	RNA	DEL	TTTC	TTTC	-	rs60025347		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:115470356_115470359delTTTC	ENST00000306533.8	+	0	257																											ctttctttcttttctttctttctt	0.358													2	4	---	---	---	---					
RP11-820L6.1	0	broad.mit.edu	37	11	122217578	122217578	+	RNA	DEL	C	C	-	rs56141108		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:122217578delC	ENST00000527474.1	-	0	478																											GAAGATTATTCTTATATATAC	0.318													4	4	---	---	---	---					
CTD-2216M2.1	0	broad.mit.edu	37	11	123079109	123079110	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:123079109_123079110insT	ENST00000531681.1	+	0	305																											TTATAAGTTTGTTTTtttctcc	0.411													2	4	---	---	---	---					
LOC100507283	100507283	broad.mit.edu	37	11	124699170	124699171	+	RNA	INS	-	-	GG	rs148380175	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:124699170_124699171insGG	ENST00000499143.2	+	0	1284																											attgaacctgagtaatcatggg	0.337													3	5	---	---	---	---					
AP002856.5	0	broad.mit.edu	37	11	131195518	131195519	+	RNA	DEL	CT	CT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:131195518_131195519delCT	ENST00000606885.1	+	0	146																											GCCGACCATACTCTCTCTCTCt	0.475													8	11	---	---	---	---					
LOC646522	646522	broad.mit.edu	37	11	133676251	133676251	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:133676251delC	ENST00000526254.1	-	0	121																											aaaaaaaaaaccatggaaaaa	0.294													2	4	---	---	---	---					
RP11-469N6.1	0	broad.mit.edu	37	11	134614688	134614689	+	RNA	DEL	GA	GA	-	rs58784206		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr11:134614688_134614689delGA	ENST00000513405.1	+	0	947																											gagggaatgggagagagagaca	0.545													11	7	---	---	---	---					
RP11-1038A11.3	0	broad.mit.edu	37	12	5480896	5480897	+	RNA	INS	-	-	AC	rs34101378		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:5480896_5480897insAC	ENST00000537192.1	+	0	414																											AACACATTCTTacacacacaca	0.371													7	15	---	---	---	---					
LOC100506393	100506393	broad.mit.edu	37	12	20182470	20182475	+	RNA	DEL	CCCAAC	CCCAAC	-	rs59697173		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:20182470_20182475delCCCAAC	ENST00000536666.1	+	0	314					NR_040098.1																						attcaccaaacccaactggaaatcag	0.442													4	3	---	---	---	---					
RP11-153K16.2	0	broad.mit.edu	37	12	23374017	23374018	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:23374017_23374018insT	ENST00000538297.1	-	0	39																											aatgctttccattttttcactc	0.351													2	4	---	---	---	---					
RP11-513G19.1	0	broad.mit.edu	37	12	26489603	26489603	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:26489603delA	ENST00000535324.1	+	0	52				RP11-612B6.2_ENST00000537724.1_lincRNA																							TTTTGAAATTAAAAATATTAT	0.299													2	4	---	---	---	---					
RP11-313F23.4	0	broad.mit.edu	37	12	34353885	34353886	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:34353885_34353886insT	ENST00000545923.2	-	0	347																											cgcacccggccttttttttttt	0.540													3	4	---	---	---	---					
RP11-547C5.1	0	broad.mit.edu	37	12	43360623	43360624	+	RNA	DEL	GT	GT	-	rs140800053		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:43360623_43360624delGT	ENST00000553006.1	+	0	24																											GATAGAAGGAgtgtgtgtgtgt	0.535													4	8	---	---	---	---					
RP11-446N19.1	0	broad.mit.edu	37	12	46934335	46934336	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:46934335_46934336insA	ENST00000607353.1	+	0	130																											accaacagtgtaaaagtgtaaa	0.431													3	6	---	---	---	---					
RP11-370I10.2	0	broad.mit.edu	37	12	48651660	48651661	+	RNA	INS	-	-	T	rs145881267	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:48651660_48651661insT	ENST00000547523.1	-	0	269																											aaaaaaaaaaagtcggtcatgg	0.480													3	3	---	---	---	---					
RP11-370I10.2	0	broad.mit.edu	37	12	48651975	48651975	+	RNA	DEL	C	C	-	rs34382730		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:48651975delC	ENST00000547523.1	-	0	269																											cgtggtggcacatgcttgtaa	0.532													4	6	---	---	---	---					
LOC283387	283387	broad.mit.edu	37	12	58273477	58273489	+	RNA	DEL	GATGTGGGATATG	GATGTGGGATATG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:58273477_58273489delGATGTGGGATATG	ENST00000499481.2	-	0	2743																											atgggatattgatgtgggatatggatgtgggat	0.451													5	7	---	---	---	---					
RP11-150C16.1	0	broad.mit.edu	37	12	59336844	59336844	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:59336844delA	ENST00000547590.1	+	0	226																											TTATTTTAATACGCATTTTGC	0.333													2	4	---	---	---	---					
RP11-631N16.2	0	broad.mit.edu	37	12	63004718	63004721	+	RNA	DEL	TGTG	TGTG	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:63004718_63004721delTGTG	ENST00000550290.1	+	0	84																											TAACCTTCTTtgtgtgtgtgtgtg	0.407													7	7	---	---	---	---					
RPS11P6	729258	broad.mit.edu	37	12	64633275	64633275	+	RNA	DEL	A	A	-	rs35347798		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:64633275delA	ENST00000535684.1	+	0	319																											ccgtctctacaaaaaaaaaaa	0.483													4	3	---	---	---	---					
RP11-335O4.1	0	broad.mit.edu	37	12	67977505	67977505	+	RNA	DEL	A	A	-	rs10709092		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:67977505delA	ENST00000540761.1	-	0	273																											ACATTTTTATAAAAAAAAAAA	0.299													3	3	---	---	---	---					
LOC101927901	101927901	broad.mit.edu	37	12	68110196	68110197	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:68110196_68110197insA	ENST00000542219.1	-	0	614																											GGGAATGCAGGAAAAAAAATAC	0.317													2	4	---	---	---	---					
RP11-314D7.4	0	broad.mit.edu	37	12	74233059	74233063	+	RNA	DEL	TTATA	TTATA	-	rs10575518		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:74233059_74233063delTTATA	ENST00000549058.1	-	0	60																											CATTTTGTTCTTATATTATGTCTAT	0.278													3	4	---	---	---	---					
RP11-114H23.1	0	broad.mit.edu	37	12	76233646	76233647	+	RNA	INS	-	-	T	rs139637136		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:76233646_76233647insT	ENST00000552856.1	-	0	295																											ttttttaattcttttttttttt	0.342													5	7	---	---	---	---					
RP11-114H23.1	0	broad.mit.edu	37	12	76281461	76281462	+	RNA	INS	-	-	C	rs145085582	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:76281461_76281462insC	ENST00000552856.1	-	0	295																											ctaaattgtgtcccccccaaaa	0.391													5	7	---	---	---	---					
RP11-13A1.3	0	broad.mit.edu	37	12	89589389	89589390	+	RNA	DEL	TC	TC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:89589389_89589390delTC	ENST00000549278.1	-	0	144																											tctcgctttttctctctctctc	0.465													2	4	---	---	---	---					
RP11-511B23.2	0	broad.mit.edu	37	12	93466104	93466105	+	RNA	INS	-	-	AAA	rs33921010	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:93466104_93466105insAAA	ENST00000550324.1	-	0	85				RP11-511B23.2_ENST00000549930.1_RNA																							AATTAGGGGTGCTGTGAGAGGA	0.450													4	6	---	---	---	---					
LOC643339	643339	broad.mit.edu	37	12	93712109	93712110	+	RNA	INS	-	-	A	rs67480416	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:93712109_93712110insA	ENST00000552835.1	-	0	407																											gtctctactacaaaaaaaaccc	0.545													3	6	---	---	---	---					
RP11-690J15.1	0	broad.mit.edu	37	12	98548054	98548054	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:98548054delT	ENST00000548344.1	-	0	68																											tgtgtctctattttttttttt	0.428													2	4	---	---	---	---					
CASC18	101929110	broad.mit.edu	37	12	106098864	106098871	+	RNA	DEL	CACACCCA	CACACCCA	-	rs146073982		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:106098864_106098871delCACACCCA	ENST00000548557.1	+	0	54																											cacccacacccacacccacacacacaca	0.394													4	5	---	---	---	---					
CASC18	101929110	broad.mit.edu	37	12	106106852	106106852	+	RNA	DEL	A	A	-	rs77231514		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:106106852delA	ENST00000548557.1	+	0	54																											acctcacctcaaaaaaaaaaa	0.478													2	4	---	---	---	---					
RP11-497G19.1	0	broad.mit.edu	37	12	117133468	117133469	+	RNA	INS	-	-	T	rs71095584		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:117133468_117133469insT	ENST00000546835.1	+	0	665																											ttctttctttcttttttttttg	0.550													3	4	---	---	---	---					
RP11-357K6.2	0	broad.mit.edu	37	12	119263806	119263809	+	RNA	DEL	AGAA	AGAA	-	rs34089054		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:119263806_119263809delAGAA	ENST00000538783.1	-	0	232																											agaaagaaagagaaagaaagaaag	0.309													2	4	---	---	---	---					
RP11-357K6.2	0	broad.mit.edu	37	12	119263828	119263828	+	RNA	DEL	A	A	-	rs10646249		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:119263828delA	ENST00000538783.1	-	0	232																											agaaagaaagaaaagaaagaa	0.303													2	4	---	---	---	---					
RP11-768F21.1	0	broad.mit.edu	37	12	119987343	119987344	+	RNA	INS	-	-	A	rs148749125		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:119987343_119987344insA	ENST00000509470.2	-	0	418																											ggttaaaacagaatgttcaggt	0.416													4	8	---	---	---	---					
RP11-768F21.1	0	broad.mit.edu	37	12	120001488	120001488	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:120001488delT	ENST00000509470.2	-	0	320																											tattattctcttttttagcta	0.353													4	4	---	---	---	---					
ZNF664-FAM101A	100533183	broad.mit.edu	37	12	124765678	124765679	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:124765678_124765679insG	ENST00000540762.1	+	0	444																											AATATGTAGCTGGGGGGTTGTA	0.455													2	4	---	---	---	---					
LINC00939	400084	broad.mit.edu	37	12	126450919	126450920	+	RNA	INS	-	-	T	rs56020622	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:126450919_126450920insT	ENST00000502479.1	-	0	1117_1118																											gatttggtttattttttggaag	0.347													4	5	---	---	---	---					
LINC00507	100862680	broad.mit.edu	37	12	128429790	128429791	+	RNA	INS	-	-	CACA	rs72244962		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:128429790_128429791insCACA	ENST00000540882.1	+	0	323				LINC00508_ENST00000538901.1_lincRNA																							acgcgcgcgcgcacacacacac	0.510													3	5	---	---	---	---					
LOC100190940	100190940	broad.mit.edu	37	12	130518306	130518346	+	RNA	DEL	AGATACAGGGGACTGAGGCATTCTCTCACTTGCTAAAATTT	AGATACAGGGGACTGAGGCATTCTCTCACTTGCTAAAATTT	-	rs12426696		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:130518306_130518346delAGATACAGGGGACTGAGGCATTCTCTCACTTGCTAAAATTT	ENST00000567788.1	-	0	4244_4284				RP11-474D1.4_ENST00000561864.1_lincRNA																							GCTAAAATTCAGATACAGGGGACTGAGGCATTCTCTCACTTGCTAAAATTTAGATACAGGG	0.440													6	6	---	---	---	---					
LOC100190940	100190940	broad.mit.edu	37	12	130527452	130527457	+	RNA	DEL	ACCCAC	ACCCAC	-	rs1696433		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr12:130527452_130527457delACCCAC	ENST00000567788.1	-	0	1139				RP11-474D1.4_ENST00000561864.1_lincRNA																							gcatacatttacccacacctacacgc	0.442													3	5	---	---	---	---					
RP11-266E6.3	0	broad.mit.edu	37	13	35232146	35232147	+	RNA	INS	-	-	A	rs67218311		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr13:35232146_35232147insA	ENST00000606365.1	-	0	183																											TCTGTGTGGGGAAAAAAAAAAA	0.396													5	2	---	---	---	---					
TPT1-AS1	100190939	broad.mit.edu	37	13	45920038	45920038	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr13:45920038delA	ENST00000517509.1	+	0	226				TPT1-AS1_ENST00000523506.1_RNA|TPT1-AS1_ENST00000412946.2_RNA|TPT1-AS1_ENST00000521336.1_RNA|TPT1-AS1_ENST00000520310.1_RNA|TPT1-AS1_ENST00000520590.1_RNA|TPT1-AS1_ENST00000523445.1_RNA|TPT1-AS1_ENST00000520622.1_RNA|TPT1-AS1_ENST00000521507.1_RNA	NR_024458.1																						ctcccgtctcaaaaaaaaaaa	0.502													2	4	---	---	---	---					
LINC00382	101927195	broad.mit.edu	37	13	80489011	80489012	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr13:80489011_80489012insT	ENST00000427918.1	+	0	428																											GTCATCTTGCCTTTTTTTTTCT	0.401													2	4	---	---	---	---					
LINC01049	101927224	broad.mit.edu	37	13	91185787	91185787	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr13:91185787delT	ENST00000426840.1	+	0	416																											GGAGAGATTCTTTTTATACAT	0.368													2	4	---	---	---	---					
OR4N5	390437	broad.mit.edu	37	14	20612063	20612064	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:20612063_20612064insC	ENST00000333629.1	+	1	169_170	c.169_170insC	c.(169-171)cccfs	p.P57fs		NM_001004724.1	NP_001004724.1	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N, member 5	57					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(2)|lung(23)|ovary(1)|skin(2)|urinary_tract(1)	29	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TGGGCTCACAGCCCCCCTCTAT	0.460													7	547	---	---	---	---					
LOC101929735	101929735	broad.mit.edu	37	14	22882408	22882408	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:22882408delG	ENST00000514473.2	-	0	225				AE000661.37_ENST00000545670.1_RNA|AE000661.37_ENST00000535351.1_RNA|AE000661.37_ENST00000541008.1_RNA																							GACGTGAGCTGGCACCTCGTT	0.493													2	4	---	---	---	---					
NOVA1-AS1	387977	broad.mit.edu	37	14	27192656	27192656	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:27192656delA	ENST00000552826.1	+	0	93																											ATTTGAAAGTAAAATCAACTC	0.274													2	4	---	---	---	---					
RP11-159L20.2	0	broad.mit.edu	37	14	31272322	31272331	+	RNA	DEL	GTGTGTGTGA	GTGTGTGTGA	-	rs146192128	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:31272322_31272331delGTGTGTGTGA	ENST00000554665.1	-	0	208																											gtgtgtgtgtgtgtgtgtgAGACTCTGGTA	0.467													4	4	---	---	---	---					
LINC00517	400208	broad.mit.edu	37	14	38369323	38369324	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:38369323_38369324insT	ENST00000554257.1	-	0	109																											aacttacagaatttttttttgt	0.421													2	4	---	---	---	---					
RP11-305B6.3	0	broad.mit.edu	37	14	44667838	44667839	+	RNA	DEL	TG	TG	-	rs72177165		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:44667838_44667839delTG	ENST00000553827.1	-	0	69																											AAACACCATAtgtgtgtgtgtg	0.302													4	4	---	---	---	---					
KTN1-AS1	100129075	broad.mit.edu	37	14	55977221	55977222	+	RNA	INS	-	-	AC	rs55838401		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:55977221_55977222insAC	ENST00000554558.1	-	0	364																											ccccatcccctacacacacaca	0.401													2	4	---	---	---	---					
KTN1-AS1	100129075	broad.mit.edu	37	14	56009805	56009806	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:56009805_56009806insA	ENST00000554558.1	-	0	364																											gactctgtctcaaaaaaaaaaa	0.485													3	6	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57347904	57347906	+	RNA	DEL	AGA	AGA	-	rs77658139		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:57347904_57347906delAGA	ENST00000534909.2	+	0	287				OTX2-AS1_ENST00000554358.1_RNA|OTX2-AS1_ENST00000554725.1_RNA|OTX2-AS1_ENST00000554428.1_RNA	NR_029385.1																						TTACTTCAGTAGAAGAACCACCC	0.438													5	2	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57405869	57405870	+	RNA	DEL	AC	AC	-	rs71450312		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:57405869_57405870delAC	ENST00000554725.1	+	0	199																											CCATCTTAAAacacacacacac	0.416													3	6	---	---	---	---					
RP11-72M17.1	0	broad.mit.edu	37	14	66723833	66723833	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:66723833delT	ENST00000556874.1	-	0	643																											agaagatggattttttttcac	0.383													2	4	---	---	---	---					
RP11-486O13.4	0	broad.mit.edu	37	14	70906575	70906576	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:70906575_70906576insG	ENST00000556646.1	-	0	286																											gacctatgattgggggtggctg	0.500													2	4	---	---	---	---					
LOC101928075	101928075	broad.mit.edu	37	14	71091026	71091027	+	RNA	DEL	AA	AA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:71091026_71091027delAA	ENST00000500016.1	-	0	388				CTD-2540L5.5_ENST00000553982.1_lincRNA																							tcactttcataatgaatagaac	0.317													3	5	---	---	---	---					
RP11-516J2.1	0	broad.mit.edu	37	14	76747498	76747499	+	RNA	INS	-	-	A	rs71303883		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:76747498_76747499insA	ENST00000555465.1	-	0	309																											atcccatctctaaaaaaaaaaa	0.426													7	8	---	---	---	---					
RP11-526N18.1	0	broad.mit.edu	37	14	80418949	80418950	+	RNA	DEL	AC	AC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:80418949_80418950delAC	ENST00000554307.1	-	0	366																											acacacacatacacacacacac	0.391													2	4	---	---	---	---					
RP11-666E17.1	0	broad.mit.edu	37	14	82243501	82243501	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:82243501delA	ENST00000554814.1	+	0	220																											TATTAGCTTCAAAAATGAACT	0.353													2	4	---	---	---	---					
RP11-26L16.1	0	broad.mit.edu	37	14	86839845	86839845	+	RNA	DEL	G	G	-	rs79954913		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:86839845delG	ENST00000553679.1	+	0	133																											catgagatatggggggggtca	0.423													7	3	---	---	---	---					
RP11-594C13.1	0	broad.mit.edu	37	14	87997014	87997015	+	RNA	DEL	CA	CA	-	rs762074		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:87997014_87997015delCA	ENST00000557070.1	-	0	62																											tgtgtgtgcgcacatatgtaca	0.470													4	7	---	---	---	---					
RP11-1152H15.1	0	broad.mit.edu	37	14	88223998	88223999	+	RNA	INS	-	-	AC	rs77384849		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:88223998_88223999insAC	ENST00000554305.1	-	0	335																											AAAaaaaaaaaaatttcattga	0.317													5	1	---	---	---	---					
RP11-472N19.3	0	broad.mit.edu	37	14	92728379	92728380	+	RNA	DEL	AG	AG	-	rs3032458	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:92728379_92728380delAG	ENST00000553537.1	-	0	134																											acacacacacagacaTATAttt	0.441													3	5	---	---	---	---					
RP11-991C1.2	0	broad.mit.edu	37	14	95516588	95516610	+	RNA	DEL	GGAAGGAAGGAAGGAAAGAAGAA	GGAAGGAAGGAAGGAAAGAAGAA	-	rs36211516	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:95516588_95516610delGGAAGGAAGGAAGGAAAGAAGAA	ENST00000554033.1	+	0	41																											aagaaggaagggaaggaaggaaggaaagaagaaggaaggaagg	0.448													7	46	---	---	---	---					
RP11-1070N10.5	0	broad.mit.edu	37	14	96098113	96098114	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:96098113_96098114insT	ENST00000555032.1	+	0	120																											AGGGGAAGGCAtttttttttcg	0.416													2	4	---	---	---	---					
RP11-1070N10.5	0	broad.mit.edu	37	14	96104150	96104151	+	RNA	INS	-	-	TCAT	rs141369065		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:96104150_96104151insTCAT	ENST00000555032.1	+	0	120																											atcatatcatatcattcattca	0.401													10	4	---	---	---	---					
RP11-61O1.1	0	broad.mit.edu	37	14	98615075	98615075	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr14:98615075delT	ENST00000555776.1	-	0	121																											AGATAGAGTCttttttttttt	0.438													3	5	---	---	---	---					
LINC01193	348120	broad.mit.edu	37	15	21157070	21157073	+	RNA	DEL	AGTT	AGTT	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:21157070_21157073delAGTT	ENST00000553416.1	+	0	515					NR_040094.1																						AATGCTCTTAAGTTAGTTCATGGT	0.397													3	5	---	---	---	---					
SNHG14	104472715	broad.mit.edu	37	15	25552240	25552240	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:25552240delT	ENST00000554726.1	+	0	245				SNHG14_ENST00000452731.1_RNA																							cctagattcatttttttTTTT	0.303													3	5	---	---	---	---					
LOC100128714	100128714	broad.mit.edu	37	15	26219252	26219252	+	RNA	DEL	T	T	-	rs67717297	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:26219252delT	ENST00000383019.2	+	0	207					NR_040082.1																						TAGCAAAGGGTGGGGCACATG	0.463													4	2	---	---	---	---					
RP11-184D12.1	0	broad.mit.edu	37	15	36386820	36386820	+	RNA	DEL	T	T	-	rs72204325		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:36386820delT	ENST00000561394.1	-	0	136																											tttttctttcttttttttttt	0.473													4	2	---	---	---	---					
LOC101928227	101928227	broad.mit.edu	37	15	38324161	38324161	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:38324161delT	ENST00000558081.2	+	0	155																											ggacaattgcttttttttttt	0.488													3	3	---	---	---	---					
LOC101928227	101928227	broad.mit.edu	37	15	38328685	38328686	+	RNA	DEL	TC	TC	-	rs10553861		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:38328685_38328686delTC	ENST00000558081.2	+	0	155																											tctgtttttgtctctctctctc	0.460													2	4	---	---	---	---					
RP11-346D14.1	0	broad.mit.edu	37	15	38460892	38460893	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:38460892_38460893insT	ENST00000561320.1	-	0	222																											ATTGTTCAGGGTTTGGGGGAGC	0.376													2	4	---	---	---	---					
RP11-624L4.1	0	broad.mit.edu	37	15	39536480	39536481	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:39536480_39536481insC	ENST00000561058.1	-	0	44				RP11-624L4.1_ENST00000558209.1_RNA|RP11-624L4.1_ENST00000560484.1_RNA																							ATTTGGGTTGGCACCAGCCATT	0.465													2	4	---	---	---	---					
SORD2P	653381	broad.mit.edu	37	15	45176562	45176562	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:45176562delT	ENST00000561384.2	-	0	71																											AAAGTTGTTATTATAGTATTG	0.313													2	4	---	---	---	---					
RP11-507B12.2	0	broad.mit.edu	37	15	61872351	61872351	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:61872351delT	ENST00000559783.1	-	0	123																											TAAGGGCCTATTTTGGGGTAG	0.328													2	4	---	---	---	---					
RP11-798K3.4	0	broad.mit.edu	37	15	67217411	67217412	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:67217411_67217412insG	ENST00000559904.1	+	0	110																											ATGGCAACCTTGGGGGAAAGCC	0.569													2	4	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81843130	81843131	+	RNA	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:81843130_81843131insG	ENST00000559211.1	+	0	98																											TAAAAAATTGAGGGGGGGAATT	0.292													3	6	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81846385	81846385	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:81846385delT	ENST00000559211.1	+	0	98																											CATTTTGGTCTTTTTTTTTTT	0.423													6	6	---	---	---	---					
RP11-648K4.2	0	broad.mit.edu	37	15	88000536	88000537	+	RNA	INS	-	-	CAAA	rs144342217	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:88000536_88000537insCAAA	ENST00000560439.1	-	0	278																											aaaccctgtctcaaacaaacaa	0.391													5	8	---	---	---	---					
RP11-648K4.2	0	broad.mit.edu	37	15	88093448	88093451	+	RNA	DEL	TGTT	TGTT	-	rs55711154	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:88093448_88093451delTGTT	ENST00000560439.1	-	0	80																											CTGTGGGCTCTGTTTGTCTCCATT	0.343													6	1	---	---	---	---					
LINC00924	145820	broad.mit.edu	37	15	96047303	96047304	+	RNA	INS	-	-	T	rs146730346	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:96047303_96047304insT	ENST00000556053.1	+	0	888					NR_027132.1																						ATGACATTTTCTTTTTTTTTTC	0.327													7	2	---	---	---	---					
LOC101927286	101927286	broad.mit.edu	37	15	97944999	97945000	+	RNA	INS	-	-	AAT	rs139701994	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:97944999_97945000insAAT	ENST00000558621.1	-	0	302				CTD-2147F2.1_ENST00000560314.1_lincRNA																							CCCTACAGAGAAATAGTCCATC	0.411													4	6	---	---	---	---					
CTD-2544M6.1	0	broad.mit.edu	37	15	98716448	98716449	+	RNA	DEL	GC	GC	-	rs112896612	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr15:98716448_98716449delGC	ENST00000560360.1	-	0	291																											gtgtgtgtgtgcgcgtgtgtgt	0.431													3	3	---	---	---	---					
RP11-10K17.6	0	broad.mit.edu	37	16	5174303	5174304	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:5174303_5174304insT	ENST00000589323.1	+	0	247																											TAAAACTATGGtttttttcttt	0.411													4	6	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5578566	5578567	+	RNA	INS	-	-	C	rs66542718	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:5578566_5578567insC	ENST00000569895.1	+	0	343																											tttttttttttCTGGCTTCTTC	0.470													3	5	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5753789	5753790	+	RNA	DEL	TA	TA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:5753789_5753790delTA	ENST00000569895.1	+	0	403																											tgtgtgtgagtatatatatatg	0.297													2	4	---	---	---	---					
LOC101927009	101927009	broad.mit.edu	37	16	9471809	9471809	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:9471809delC	ENST00000564305.1	+	0	193																											tggtctcaaacccccggacgc	0.468													2	4	---	---	---	---					
U91319.1	0	broad.mit.edu	37	16	13375643	13375644	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:13375643_13375644insT	ENST00000571619.1	+	0	178																											TTCTTTTTCCATTTTTTTCCCT	0.292													2	4	---	---	---	---					
AC004125.3	0	broad.mit.edu	37	16	24250023	24250024	+	RNA	DEL	CT	CT	-	rs72269321		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:24250023_24250024delCT	ENST00000567624.1	+	0	52																											cacacacacactcacacacaca	0.485													6	8	---	---	---	---					
LINC01567	400511	broad.mit.edu	37	16	24680809	24680809	+	RNA	DEL	A	A	-	rs61045296		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:24680809delA	ENST00000414816.1	-	0	136																											actctgtctcaaaaaaaaaaa	0.493													4	2	---	---	---	---					
RP11-67H24.2	0	broad.mit.edu	37	16	32833418	32833419	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:32833418_32833419insT	ENST00000569859.1	+	0	373																											tgtttctttcccttattcttcc	0.361													4	9	---	---	---	---					
RP11-19N8.4	0	broad.mit.edu	37	16	33066651	33066652	+	RNA	DEL	TC	TC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:33066651_33066652delTC	ENST00000561541.1	-	0	291																											tttcgctgtttctctttctccc	0.381													2	4	---	---	---	---					
RP11-142G1.1	0	broad.mit.edu	37	16	52273223	52273224	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:52273223_52273224insT	ENST00000568286.1	+	0	120																											TAGCTTTCCTGTTTTTTTTTAA	0.366													3	5	---	---	---	---					
LOC102723373	102723373	broad.mit.edu	37	16	53414421	53414422	+	RNA	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:53414421_53414422insC	ENST00000565189.1	+	0	149																											ctggattgtatccccccaaaat	0.426													3	6	---	---	---	---					
RP11-410D17.2	0	broad.mit.edu	37	16	59025836	59025836	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:59025836delT	ENST00000500117.1	+	0	679																											cttttaactcttttttctcta	0.378													2	4	---	---	---	---					
LOC101927580	101927580	broad.mit.edu	37	16	59921875	59921875	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:59921875delC	ENST00000568279.1	+	0	173																											GGAAAGTATTCCAGTCTTCCT	0.418													2	4	---	---	---	---					
LINC00922	283867	broad.mit.edu	37	16	65483416	65483417	+	RNA	INS	-	-	TAGA	rs141030938	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:65483416_65483417insTAGA	ENST00000569736.1	-	0	217					NR_027755.1																						aggtaggcaggtagatagatag	0.327													3	6	---	---	---	---					
LINC00922	283867	broad.mit.edu	37	16	65499648	65499649	+	RNA	INS	-	-	GT	rs79569095		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:65499648_65499649insGT	ENST00000569736.1	-	0	217					NR_027755.1																						catatacatacgtgtgtatata	0.277													4	4	---	---	---	---					
LINC01572	101927957	broad.mit.edu	37	16	72502636	72502636	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:72502636delA	ENST00000561611.2	-	0	221																											TACTTAGAGTAAAAAAAAAAA	0.363													2	4	---	---	---	---					
LOC102724084	102724084	broad.mit.edu	37	16	80223437	80223438	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:80223437_80223438insA	ENST00000565050.1	-	0	598				RP11-525K10.3_ENST00000568776.1_RNA																							AATTTAGAAAGAAAAAAAAATT	0.436													3	5	---	---	---	---					
LOC102724084	102724084	broad.mit.edu	37	16	80412908	80412909	+	RNA	DEL	TC	TC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr16:80412908_80412909delTC	ENST00000565050.1	-	0	598				RP11-525K10.3_ENST00000568819.1_RNA|RP11-525K10.3_ENST00000568776.1_RNA																							cttcttgatatctctctctctc	0.475													4	6	---	---	---	---					
TMEM220-AS1	101101775	broad.mit.edu	37	17	10707865	10707865	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:10707865delT	ENST00000580899.1	+	0	215					NR_073458.1																						AATTGGTCCATGTTAGCAAGA	0.438													2	4	---	---	---	---					
LOC100128006	100128006	broad.mit.edu	37	17	12678359	12678359	+	RNA	DEL	A	A	-	rs57290665		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:12678359delA	ENST00000584772.1	-	0	100																											attctgtctcaaaaaaaaaaG	0.473													4	4	---	---	---	---					
AC005863.2	0	broad.mit.edu	37	17	14801595	14801596	+	RNA	INS	-	-	GT	rs71150220		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:14801595_14801596insGT	ENST00000445035.2	+	0	659																											TACTATTTGAAGTGTGTGTGTG	0.391													4	2	---	---	---	---					
RP11-524F11.2	0	broad.mit.edu	37	17	17498624	17498624	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:17498624delA	ENST00000583662.1	+	0	275																											ccctgtctccaaaaaaaaaga	0.458													4	4	---	---	---	---					
FAM222B	55731	broad.mit.edu	37	17	27086257	27086258	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:27086257_27086258insG	ENST00000341217.5	-	3	934_935	c.719_720insC	c.(718-720)caafs	p.Q240fs	FAM222B_ENST00000582266.1_3'UTR|FAM222B_ENST00000452648.3_Frame_Shift_Ins_p.Q240fs|FAM222B_ENST00000581407.1_Frame_Shift_Ins_p.Q240fs	NM_018182.2	NP_060652.2	Q8WU58	CQ063_HUMAN	family with sequence similarity 222, member B	240																	CGGTCACATTCGGGGGGGCATC	0.619													8	83	---	---	---	---					
MIR4523	100616122	broad.mit.edu	37	17	27706230	27706231	+	RNA	INS	-	-	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:27706230_27706231insA	ENST00000577218.1	-	0	173				RP11-296K13.4_ENST00000584958.1_lincRNA	NR_039749.1																						gactccatctcaaaaaaaaaaa	0.460													2	4	---	---	---	---					
PCGF2	7703	broad.mit.edu	37	17	36896586	36896587	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:36896586_36896587insC	ENST00000580830.1	-	4	770_771	c.69_70insG	c.(67-72)ggacttfs	p.L24fs	PCGF2_ENST00000585100.1_Frame_Shift_Ins_p.L24fs|PCGF2_ENST00000360797.2_Frame_Shift_Ins_p.L24fs|PCGF2_ENST00000581345.1_Frame_Shift_Ins_p.L24fs|PCGF2_ENST00000578109.1_Intron|PCGF2_ENST00000579882.1_Frame_Shift_Ins_p.L24fs			P35227	PCGF2_HUMAN	polycomb group ring finger 2	24					negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(4)|skin(1)	10	Breast(7;9.07e-22)					TCGATGAAGTACCCCCCGCAGA	0.629													10	233	---	---	---	---					
KRT12	3859	broad.mit.edu	37	17	39023130	39023131	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:39023130_39023131insC	ENST00000251643.4	-	1	331_332	c.308_309insG	c.(307-309)gagfs	p.E103fs		NM_000223.3	NP_000214.1	Q99456	K1C12_HUMAN	keratin 12	103	Gly-rich.|Head.				visual perception	intermediate filament	structural molecule activity			central_nervous_system(1)|endometrium(1)|large_intestine(3)|liver(1)|lung(5)|ovary(2)|upper_aerodigestive_tract(2)	15		Breast(137;0.000301)				CTCCTGGGCTGCCCCCAAATCC	0.540													7	756	---	---	---	---					
GHDC	84514	broad.mit.edu	37	17	40344321	40344322	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:40344321_40344322insC	ENST00000301671.8	-	4	1267_1268	c.826_827insG	c.(826-828)cctfs	p.P276fs	GHDC_ENST00000587427.1_Frame_Shift_Ins_p.P276fs|GHDC_ENST00000436923.2_Frame_Shift_Ins_p.P276fs|GHDC_ENST00000428494.2_Frame_Shift_Ins_p.P237fs|GHDC_ENST00000593209.1_Frame_Shift_Ins_p.P276fs|GHDC_ENST00000414034.3_Frame_Shift_Ins_p.P276fs			Q8N2G8	GHDC_HUMAN	GH3 domain containing	276						endoplasmic reticulum|nuclear envelope				central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(5)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	13		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		GGCCCCGAGGGCAGCCACAGCC	0.663													7	254	---	---	---	---					
LOC101929767	101929767	broad.mit.edu	37	17	41318149	41318150	+	RNA	INS	-	-	TG			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:41318149_41318150insTG	ENST00000590740.1	-	0	561																											cttcctctctctctgtgtgtgt	0.426													4	3	---	---	---	---					
MAP3K14	9020	broad.mit.edu	37	17	43365745	43365746	+	RNA	INS	-	-	T	rs71944167		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:43365745_43365746insT	ENST00000344686.2	-	0	435							Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase 14						cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			breast(3)|central_nervous_system(4)|cervix(2)|endometrium(3)|kidney(1)|large_intestine(4)|lung(5)|ovary(2)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)	27						TTGAACtcttgttttttttttt	0.465													5	9	---	---	---	---					
SP2	6668	broad.mit.edu	37	17	45994141	45994142	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:45994141_45994142insC	ENST00000376741.4	+	3	841_842	c.704_705insC	c.(703-705)accfs	p.T235fs	AC003665.1_ENST00000451140.2_RNA|AC003665.1_ENST00000411573.2_RNA|AC003665.1_ENST00000585280.1_RNA|AC003665.1_ENST00000433001.1_RNA	NM_003110.5	NP_003101.3	Q02086	SP2_HUMAN	Sp2 transcription factor	235					immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|histone deacetylase binding|zinc ion binding			endometrium(1)|large_intestine(1)|lung(7)|prostate(2)|skin(1)|urinary_tract(1)	13						CTCACTGAAAGCCCCCCAACCC	0.609													9	574	---	---	---	---					
RP11-429O1.1	0	broad.mit.edu	37	17	50581683	50581684	+	RNA	INS	-	-	T	rs145581966	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:50581683_50581684insT	ENST00000572848.1	+	0	76																											TTTTTAATAACTGGAGGTTTTG	0.416													8	1	---	---	---	---					
RNF43	54894	broad.mit.edu	37	17	56435501	56435502	+	Frame_Shift_Ins	INS	-	-	G	rs144487242	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:56435501_56435502insG	ENST00000584437.1	-	8	3590_3591	c.1635_1636insC	c.(1633-1638)tcgccafs	p.P546fs	RNF43_ENST00000581868.1_Frame_Shift_Ins_p.P419fs|RNF43_ENST00000577625.1_Frame_Shift_Ins_p.P419fs|RNF43_ENST00000407977.2_Frame_Shift_Ins_p.P546fs|RNF43_ENST00000500597.2_Frame_Shift_Ins_p.P505fs|RNF43_ENST00000577716.1_Frame_Shift_Ins_p.P546fs|RNF43_ENST00000583753.1_Frame_Shift_Ins_p.P505fs|BZRAP1-AS1_ENST00000583841.1_RNA			Q68DV7	RNF43_HUMAN	ring finger protein 43	546						endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding			NS(1)|biliary_tract(5)|breast(1)|central_nervous_system(1)|endometrium(10)|kidney(2)|large_intestine(14)|lung(9)|ovary(2)|pancreas(10)|prostate(1)|skin(4)	60	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGACATGGCTGGAAACCTGGG	0.624													18	318	---	---	---	---					
LINC01028	101928141	broad.mit.edu	37	17	68058793	68058796	+	RNA	DEL	AAAA	AAAA	-	rs10603338		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:68058793_68058796delAAAA	ENST00000586373.1	+	0	134				AC002539.1_ENST00000587325.1_RNA|AC002539.1_ENST00000435112.1_RNA																							actctgtctcaaaaaaaaaaaaaa	0.441													2	4	---	---	---	---					
USP36	57602	broad.mit.edu	37	17	76799860	76799861	+	Frame_Shift_Ins	INS	-	-	G	rs3088040	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr17:76799860_76799861insG	ENST00000312010.6	-	16	2740_2741	c.2416_2417insC	c.(2416-2418)gagfs	p.E806fs	USP36_ENST00000449938.2_Intron|USP36_ENST00000542802.2_Frame_Shift_Ins_p.E806fs	NM_025090.3	NP_079366.3	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	806			Q -> R (in dbSNP:rs3088040).		ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(12)|ovary(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	34			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			AGAGGGGCTCTGGGGGGGCTCA	0.629													12	90	---	---	---	---					
ROCK1P1	727758	broad.mit.edu	37	18	112402	112405	+	RNA	DEL	AACC	AACC	-	rs113232824		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:112402_112405delAACC	ENST00000576266.1	+	0	36_39																											CCCTGCCCCGAACCACCCGACCCC	0.711													3	4	---	---	---	---					
RP11-78F17.1	0	broad.mit.edu	37	18	976629	976629	+	RNA	DEL	C	C	-	rs59852317		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:976629delC	ENST00000580781.1	+	0	39				RP11-689C9.1_ENST00000606879.1_lincRNA																							tttccaggtgccctccgtcac	0.592													2	4	---	---	---	---					
CTD-2015H3.2	0	broad.mit.edu	37	18	1697951	1697952	+	RNA	DEL	CT	CT	-	rs112666371		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:1697951_1697952delCT	ENST00000580524.1	+	0	408																											tccacacttcctctctctctct	0.351													7	8	---	---	---	---					
CTD-2015H3.2	0	broad.mit.edu	37	18	1699576	1699576	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:1699576delT	ENST00000580524.1	+	0	408																											tgctgtttaatttttttgttg	0.299													2	4	---	---	---	---					
RP11-703M24.5	0	broad.mit.edu	37	18	2818263	2818264	+	RNA	INS	-	-	A	rs59490791	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:2818263_2818264insA	ENST00000583546.1	-	0	308																											gattctgtctcaaaaaaaaaag	0.361													4	3	---	---	---	---					
RP11-172F10.1	0	broad.mit.edu	37	18	4912884	4912884	+	RNA	DEL	C	C	-	rs35499639		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:4912884delC	ENST00000584204.1	-	0	500																											tcttcttcttctttttttttt	0.358													2	4	---	---	---	---					
RP11-677O4.2	0	broad.mit.edu	37	18	11668905	11668905	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:11668905delA	ENST00000561598.1	-	0	1259																											tttaaaggggaaaaaaaaaca	0.463													4	6	---	---	---	---					
RP11-805F19.2	0	broad.mit.edu	37	18	15098681	15098682	+	RNA	INS	-	-	GAGG	rs138448026	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:15098681_15098682insGAGG	ENST00000583946.1	+	0	113																											AATGATTATAAGAGGGCAGCCT	0.436													3	6	---	---	---	---					
DSCAS	101927698	broad.mit.edu	37	18	28684521	28684521	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:28684521delA	ENST00000581836.1	+	0	208																											AGCAACAACCAAAAAAATCCC	0.458													2	4	---	---	---	---					
LINC00669	647946	broad.mit.edu	37	18	37083731	37083732	+	RNA	INS	-	-	AT	rs1615522	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:37083731_37083732insAT	ENST00000591629.1	-	0	440					NR_024391.1																						cacacacacacacacacaATGT	0.337													5	4	---	---	---	---					
RP11-116O18.3	0	broad.mit.edu	37	18	43263073	43263073	+	RNA	DEL	G	G	-	rs76492882	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:43263073delG	ENST00000589510.1	-	0	206																											aaaaaaaaaaGGGGAAGTCAC	0.493													3	6	---	---	---	---					
RP11-824M15.3	0	broad.mit.edu	37	18	57488510	57488510	+	RNA	DEL	A	A	-	rs74312550		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:57488510delA	ENST00000588088.1	+	0	28																											tgtttaaaccaaaaaaaaaga	0.373													9	12	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	61877379	61877379	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:61877379delA	ENST00000589376.1	+	0	200					NR_033881.1																						ACATCCACTCAAGCACTTTAC	0.393													2	4	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	61994128	61994129	+	RNA	DEL	AC	AC	-	rs35529290		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:61994128_61994129delAC	ENST00000589376.1	+	0	580					NR_033881.1																						TTTCAAAATTacacacacacac	0.386													4	7	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	62040702	62040717	+	RNA	DEL	CCTCCCTCCGTCCCTA	CCTCCCTCCGTCCCTA	-	rs10164062		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:62040702_62040717delCCTCCCTCCGTCCCTA	ENST00000589376.1	+	0	580					NR_033881.1																						gatttcccttcctccctccgtccctacctccctccg	0.486													5	8	---	---	---	---					
LOC643542	643542	broad.mit.edu	37	18	65208025	65208026	+	RNA	DEL	TG	TG	-	rs34427027		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:65208025_65208026delTG	ENST00000583687.1	+	0	204					NR_033921.1																						ATCATGTGCCtgtgtgtgtgtg	0.406													4	7	---	---	---	---					
RP11-526H11.1	0	broad.mit.edu	37	18	65773397	65773397	+	RNA	DEL	T	T	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:65773397delT	ENST00000580057.1	+	0	40																											ttatgtctactttctacatag	0.423													3	6	---	---	---	---					
RP11-176N18.2	0	broad.mit.edu	37	18	75182520	75182521	+	RNA	INS	-	-	T	rs34505024		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:75182520_75182521insT	ENST00000583629.1	+	0	406																											ACCAAAGAAACTTTTTTTTTTT	0.312													2	4	---	---	---	---					
RP11-176N18.2	0	broad.mit.edu	37	18	75239653	75239654	+	RNA	INS	-	-	CC			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr18:75239653_75239654insCC	ENST00000583629.1	+	0	497																											CATCCGCCTTGCACCCTTACTG	0.564													2	4	---	---	---	---					
LOC100289333	100289333	broad.mit.edu	37	19	12320934	12320934	+	RNA	DEL	T	T	-	rs59067498		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:12320934delT	ENST00000426044.1	+	0	127																											ctttgctctgttttttttttt	0.478													3	5	---	---	---	---					
CTC-548K16.2	0	broad.mit.edu	37	19	14473564	14473567	+	RNA	DEL	GGAA	GGAA	-	rs7507976		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:14473564_14473567delGGAA	ENST00000586698.1	-	0	119																											agaaagagagggaaggaaggaagg	0.436													4	8	---	---	---	---					
CYP4F2	8529	broad.mit.edu	37	19	16006366	16006367	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:16006366_16006367insG	ENST00000221700.5	-	3	387_388	c.292_293insC	c.(292-294)cctfs	p.P98fs	CYP4F2_ENST00000592328.1_Intron|CYP4F2_ENST00000011989.7_Intron	NM_001082.3	NP_001073.3	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F, polypeptide 2	98					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			NS(2)|breast(1)|endometrium(6)|kidney(2)|large_intestine(9)|liver(1)|lung(18)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	46						CAAACTGAGGAGGGGGGAGATG	0.594													10	501	---	---	---	---					
LOC100420587	100420587	broad.mit.edu	37	19	29129999	29129999	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:29129999delG	ENST00000592347.1	-	0	642				AC005394.1_ENST00000585394.1_lincRNA																							TCTGCTGACTGGGAAGCACTA	0.423													6	7	---	---	---	---					
CTD-2050I18.1	0	broad.mit.edu	37	19	32038163	32038166	+	RNA	DEL	GGGA	GGGA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:32038163_32038166delGGGA	ENST00000593063.1	+	0	282																											CACACAGGGTGGGAGGAAGAGACA	0.431													5	9	---	---	---	---					
LOC400684	400684	broad.mit.edu	37	19	32883084	32883087	+	RNA	DEL	AGGC	AGGC	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:32883084_32883087delAGGC	ENST00000592680.1	-	0	667					NR_046201.1																						gaagaaaggaaggcaggcaggcag	0.495													5	9	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	39008211	39008212	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:39008211_39008212insC	ENST00000355481.4	+	66	10029_10030	c.9898_9899insC	c.(9898-9900)cccfs	p.P3300fs	RYR1_ENST00000360985.3_Frame_Shift_Ins_p.P3300fs|RYR1_ENST00000359596.3_Frame_Shift_Ins_p.P3300fs	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	3300					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCCCGCCGGCGCCCCCCCACCC	0.658													7	109	---	---	---	---					
KCNN4	3783	broad.mit.edu	37	19	44284860	44284861	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:44284860_44284861insC	ENST00000262888.3	-	1	548_549	c.153_154insG	c.(151-156)gggctcfs	p.L52fs		NM_002250.2	NP_002241.1	O15554	KCNN4_HUMAN	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	52					defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			biliary_tract(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(6)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	15		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	CTCACCGAGCACCCCCCGAACC	0.653													7	449	---	---	---	---					
MARK4	57787	broad.mit.edu	37	19	45742474	45742475	+	RNA	INS	-	-	T	rs71173128		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:45742474_45742475insT	ENST00000590022.1	-	0	30																											AAGATGGGGACttttttttttt	0.530													9	6	---	---	---	---					
SPACA6P	147650	broad.mit.edu	37	19	52197986	52197987	+	RNA	INS	-	-	T	rs140038491	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:52197986_52197987insT	ENST00000573266.1	+	0	1212					NR_024330.1																						GAAGGCAGCTCTAAGAGCCAGG	0.584													5	11	---	---	---	---					
AC008984.2	0	broad.mit.edu	37	19	54837808	54837809	+	RNA	INS	-	-	T	rs35699388		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:54837808_54837809insT	ENST00000507363.1	-	0	586																											ATGTCAAGttcttttttttttt	0.525													3	5	---	---	---	---					
DNAAF3	352909	broad.mit.edu	37	19	55672058	55672059	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:55672058_55672059insC	ENST00000527223.2	-	9	1202_1203	c.1201_1202insG	c.(1201-1203)cctfs	p.P401fs	DNAAF3_ENST00000524407.2_Frame_Shift_Ins_p.P333fs|DNAAF3_ENST00000455045.1_Frame_Shift_Ins_p.P279fs|CTD-2587H24.5_ENST00000591665.1_RNA|DNAAF3_ENST00000391720.4_Frame_Shift_Ins_p.P380fs	NM_001256714.1	NP_001243643.1	Q8N9W5	CS051_HUMAN	dynein, axonemal, assembly factor 3	333																	CTCCTCCAGGTCCCCCCCGGTG	0.673											OREG0025678	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	250	---	---	---	---					
EPN1	29924	broad.mit.edu	37	19	56203183	56203184	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr19:56203183_56203184insG	ENST00000411543.2	+	7	1631_1632	c.1084_1085insG	c.(1084-1086)gggfs	p.G362fs	EPN1_ENST00000085079.7_Frame_Shift_Ins_p.G251fs|EPN1_ENST00000270460.6_Frame_Shift_Ins_p.G276fs	NM_001130071.1	NP_001123543.1	Q9Y6I3	EPN1_HUMAN	epsin 1	276	8 X 3 AA repeats of [ED]-P-W.|Ala/Gly/Pro-rich.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding	p.G364fs*164(1)		endometrium(5)|kidney(1)|large_intestine(2)|lung(8)|skin(1)	17		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		CACAGACCCCTGGGGGGGCCCA	0.688													11	120	---	---	---	---					
RP4-764O22.1	0	broad.mit.edu	37	20	7117162	7117163	+	RNA	INS	-	-	AAGAG	rs10688196		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:7117162_7117163insAAGAG	ENST00000425900.1	+	0	81																											AGAGGGAGACAaagagaagaga	0.411													5	4	---	---	---	---					
SNAP25-AS1	100131208	broad.mit.edu	37	20	10307102	10307103	+	RNA	DEL	CA	CA	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:10307102_10307103delCA	ENST00000421143.2	-	0	5				SNAP25-AS1_ENST00000453544.1_RNA																							cacacacatgcacacacacaca	0.460													2	4	---	---	---	---					
RP4-705D16.3	0	broad.mit.edu	37	20	16707960	16707960	+	RNA	DEL	G	G	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:16707960delG	ENST00000425939.1	-	0	440																											ATCACCACCTGGGGAGAGAAA	0.328													2	4	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29595625	29595625	+	RNA	DEL	T	T	-	rs111897002		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:29595625delT	ENST00000432067.1	-	0	74																											TGTAAAAAAATCACAGGATCC	0.408													6	10	---	---	---	---					
DEFB122	245935	broad.mit.edu	37	20	30014049	30014055	+	RNA	DEL	CTCTCCC	CTCTCCC	-	rs112812156		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:30014049_30014055delCTCTCCC	ENST00000433453.1	-	0	256					NR_045677.1																						TTCAAAAACGctctcccctctcccctc	0.459													3	4	---	---	---	---					
RP11-101E14.3	0	broad.mit.edu	37	20	38663342	38663343	+	RNA	INS	-	-	AAA	rs71191894		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:38663342_38663343insAAA	ENST00000423153.1	+	0	222																											ATTCTGAAGTTAAAAAAAAAAA	0.391													4	4	---	---	---	---					
EMILIN3	90187	broad.mit.edu	37	20	39990828	39990829	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:39990828_39990829insC	ENST00000332312.3	-	4	1572_1573	c.1380_1381insG	c.(1378-1383)ggggggfs	p.GG460fs		NM_052846.1	NP_443078.1	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	460						proteinaceous extracellular matrix		p.W461fs*31(1)		biliary_tract(1)|endometrium(2)|kidney(1)|large_intestine(2)|liver(1)|lung(15)|ovary(1)|prostate(2)|skin(3)|urinary_tract(2)	30		Myeloproliferative disorder(115;0.00425)				CCCACTCCCCACCCCCCCATGT	0.639													8	210	---	---	---	---					
LINC01260	79015	broad.mit.edu	37	20	43287414	43287414	+	RNA	DEL	A	A	-	rs6124655		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:43287414delA	ENST00000415889.2	-	0	815				RP11-445H22.3_ENST00000255183.4_RNA																							gtattgggggaaaaaaaaaaT	0.483													5	6	---	---	---	---					
LINC01429	101927678	broad.mit.edu	37	20	50449447	50449448	+	RNA	INS	-	-	C	rs6067958	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr20:50449447_50449448insC	ENST00000438154.1	-	0	1213_1214																											aaaaaaaaaaacaaagaaCCCC	0.441													4	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11060851	11060854	+	RNA	DEL	ATAC	ATAC	-	rs150623551		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr21:11060851_11060854delATAC	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		gtaatatataataCATAAGTAACA	0.328													2	4	---	---	---	---					
CYP4F29P	54055	broad.mit.edu	37	21	15216920	15216921	+	RNA	INS	-	-	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr21:15216920_15216921insT	ENST00000428301.1	-	0	865					NR_026755.1|NR_047508.1																						GGATGGTAGTGTGGTCAGTGGG	0.554													4	7	---	---	---	---					
ABCC13	150000	broad.mit.edu	37	21	15663777	15663778	+	RNA	INS	-	-	GTGTGT	rs71330056	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr21:15663777_15663778insGTGTGT	ENST00000482980.1	+	0	712																											AACAGGTAAGAgtgtgtgtgtg	0.347													5	6	---	---	---	---					
AP000476.1	0	broad.mit.edu	37	21	25852679	25852679	+	RNA	DEL	T	T	-	rs142709148		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr21:25852679delT	ENST00000453784.2	+	0	650																											TGCATGCTGAttttttttttt	0.433													3	3	---	---	---	---					
AP000318.2	0	broad.mit.edu	37	21	35694193	35694193	+	RNA	DEL	T	T	-	rs140976828		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr21:35694193delT	ENST00000427022.1	+	0	506																											TACCACAttcttttttttttt	0.413													2	4	---	---	---	---					
AP000345.2	0	broad.mit.edu	37	22	23914618	23914619	+	RNA	INS	-	-	A	rs10548224	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:23914618_23914619insA	ENST00000454863.1	+	0	390				AP000345.2_ENST00000458318.1_RNA																							acaacaacaacaaaaaaaaaaa	0.431													3	5	---	---	---	---					
CTA-292E10.6	0	broad.mit.edu	37	22	29231001	29231001	+	RNA	DEL	T	T	-	rs139819375		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:29231001delT	ENST00000458080.1	+	0	263				CTA-292E10.6_ENST00000418292.1_RNA																							agtaattttcttttttttttg	0.453													5	3	---	---	---	---					
CTA-292E10.6	0	broad.mit.edu	37	22	29234412	29234413	+	RNA	DEL	AG	AG	-	rs35085861		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:29234412_29234413delAG	ENST00000458080.1	+	0	263				CTA-292E10.6_ENST00000418292.1_RNA																							agaaagagaaagagagagagaa	0.510													3	3	---	---	---	---					
LL22NC03-86D4.1	0	broad.mit.edu	37	22	34548531	34548531	+	RNA	DEL	A	A	-	rs67787852		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:34548531delA	ENST00000412218.1	+	0	261																											GAAAACAGGCAAAAAAAAAAA	0.363													7	0	---	---	---	---					
LINC01399	104310353	broad.mit.edu	37	22	35544416	35544417	+	RNA	INS	-	-	TT	rs139144155	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:35544416_35544417insTT	ENST00000423311.1	-	0	512																											ggtctccAGTCTACACTGCAGC	0.520													5	2	---	---	---	---					
LINC01399	104310353	broad.mit.edu	37	22	35575696	35575697	+	RNA	INS	-	-	C	rs134390	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:35575696_35575697insC	ENST00000423311.1	-	0	222																											agactacataatttataaagaa	0.446													3	3	---	---	---	---					
SERHL	94009	broad.mit.edu	37	22	42898666	42898666	+	RNA	DEL	C	C	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:42898666delC	ENST00000359906.2	+	0	409					NR_027786.1				serine hydrolase-like											endometrium(1)|large_intestine(1)	2						CCATATGGTGCCCCCCCCCCA	0.592													5	11	---	---	---	---					
LOC284930	284930	broad.mit.edu	37	22	48210196	48210197	+	RNA	INS	-	-	TGTA	rs141681320	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chr22:48210196_48210197insTGTA	ENST00000423737.1	+	0	1125																											gcatgaatgtgtgtatgtatgt	0.450													3	5	---	---	---	---					
LINC00102	100359394	broad.mit.edu	37	X	2532606	2532606	+	RNA	DEL	A	A	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chrX:2532606delA	ENST00000445785.1	-	0	631					NR_037842.1																						actccatatgaaaaaaaaaaa	0.478													3	2	---	---	---	---					
RP5-964N17.1	0	broad.mit.edu	37	X	113100131	113100132	+	RNA	INS	-	-	A	rs56743681		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0ead7c7-169e-4932-a987-5461611c95e6	fd0081e1-db5a-40d3-bddd-d8048bde1683	g.chrX:113100131_113100132insA	ENST00000468762.2	-	0	26																											gaccaggagagaaaaaaaacag	0.426													2	4	---	---	---	---					
