Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC22A13	9390	broad.mit.edu	37	3	38307442	38307442	+	Silent	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr3:38307442C>T	ENST00000311856.4	+	1	140	c.91C>T	c.(91-93)Ctg>Ttg	p.L31L	SLC22A13_ENST00000450935.2_5'UTR	NM_004256.3	NP_004247.2	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion/urate transporter), member 13	31						integral to plasma membrane	organic cation transmembrane transporter activity	p.L31M(1)		cervix(1)|endometrium(5)|kidney(1)|large_intestine(4)|lung(7)|skin(1)|urinary_tract(1)	20				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		TCTCAACTTCCTGTCTCCCTT	0.498000													7	34					0	0	0.001984	0	0
SLC22A1	6580	broad.mit.edu	37	6	160575836	160575836	+	Silent	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr6:160575836C>T	ENST00000366963.4	+	9	1539	c.1392C>T	c.(1390-1392)ctC>ctT	p.L464L	SLC22A1_ENST00000457470.2_Intron|SLC22A1_ENST00000324965.4_Intron	NM_003057.2|NM_153187.1	NP_003048.1|NP_694857.1	O15245	S22A1_HUMAN	solute carrier family 22 (organic cation transporter), member 1	464						basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding		SLC22A1/CUTA(2)	breast(1)|endometrium(3)|large_intestine(3)|lung(13)|upper_aerodigestive_tract(1)	21		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		TCAGGAACCTCGGAGTGATGG	0.438000													6	21					0	0	0.001168	0	0
ACER2	340485	broad.mit.edu	37	9	19424785	19424785	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr9:19424785C>T	ENST00000340967.2	+	3	337	c.311C>T	c.(310-312)gCt>gTt	p.A104V	ACER2_ENST00000380376.1_Missense_Mutation_p.A55V	NM_001010887.2	NP_001010887.2	Q5QJU3	ACER2_HUMAN	alkaline ceramidase 2	104					ceramide metabolic process|negative regulation of cell adhesion mediated by integrin|negative regulation of cell-matrix adhesion|negative regulation of protein glycosylation in Golgi|positive regulation of cell proliferation|response to retinoic acid|sphingosine biosynthetic process	integral to Golgi membrane	ceramidase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(6)|prostate(1)|skin(1)	13						CTGATGTGTGCTTTGGCCATG	0.438000													9	52					0	0	0.004482	0	0
DPF2	5977	broad.mit.edu	37	11	65116348	65116348	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr11:65116348G>A	ENST00000528416.1	+	10	1178	c.1045G>A	c.(1045-1047)Gat>Aat	p.D349N	DPF2_ENST00000415073.2_Missense_Mutation_p.D165N|DPF2_ENST00000252268.4_Missense_Mutation_p.D363N	NM_006268.4	NP_006259.1	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	349					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(7)|lung(7)|ovary(1)|prostate(1)	23						TGATGACTGCGATCGTGGCTA	0.488000													10	42					0	0	0.006214	0	0
SSTR2	6752	broad.mit.edu	37	17	71165803	71165803	+	Silent	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr17:71165803C>T	ENST00000357585.2	+	2	714	c.345C>T	c.(343-345)tgC>tgT	p.C115C	SSTR2_ENST00000315332.2_Silent_p.C115C|RP11-143K11.5_ENST00000580671.1_RNA	NM_001050.2	NP_001041.1	P30874	SSR2_HUMAN	somatostatin receptor 2	115					digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity			endometrium(2)|large_intestine(5)|lung(2)|prostate(2)	11			LUSC - Lung squamous cell carcinoma(166;0.197)			AGGCCATTTGCCGGGTGGTCA	0.562000													9	39					0	0	0.004482	0	0
ALDH6A1	4329	broad.mit.edu	37	14	74551056	74551056	+	Silent	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr14:74551056G>A	ENST00000553458.1	-	1	140	c.42C>T	c.(40-42)atC>atT	p.I14I	ALDH6A1_ENST00000556852.1_5'UTR|ALDH6A1_ENST00000350259.4_Silent_p.I14I	NM_001278593.1|NM_005589.2	NP_001265522.1|NP_005580.1	Q02252	MMSA_HUMAN	aldehyde dehydrogenase 6 family, member A1	14						mitochondrial matrix|nucleus	fatty-acyl-CoA binding|malonate-semialdehyde dehydrogenase (acetylating) activity|methylmalonate-semialdehyde dehydrogenase (acylating) activity			NS(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(3)|ovary(2)|prostate(3)|skin(3)	21				BRCA - Breast invasive adenocarcinoma(234;0.00354)	NADH(DB00157)	TCGCCTGCAGGATCCGGGCTC	0.667000													4	36					0	0	0.009096	0	0
DNAH8	1769	broad.mit.edu	37	6	38998146	38998146	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr6:38998146C>A	ENST00000359357.3	+	91	13705	c.13451C>A	c.(13450-13452)gCc>gAc	p.A4484D	DNAH8_ENST00000441566.1_Missense_Mutation_p.A4448D					dynein, axonemal, heavy chain 8											NS(7)|breast(9)|central_nervous_system(4)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(3)|kidney(16)|large_intestine(44)|liver(4)|lung(101)|ovary(7)|pancreas(2)|prostate(8)|skin(28)|stomach(4)|upper_aerodigestive_tract(6)|urinary_tract(4)	260						AGAGGAGTGGCCCTTTTGTGT	0.478000													4	42					1.024e-07	2.76859e-07	0.014758	1	0
PRDM9	56979	broad.mit.edu	37	5	23527795	23527795	+	Silent	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr5:23527795G>A	ENST00000296682.3	+	11	2780	c.2598G>A	c.(2596-2598)ggG>ggA	p.G866G		NM_020227.2	NP_064612.2	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	866					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|endometrium(15)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(27)|lung(87)|ovary(6)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(11)	172						GGGAGTGTGGGCGGGGCTTTA	0.562000										HNSCC(3;0.000094)			17	88					0	0	0.008871	0	0
TEKT3	64518	broad.mit.edu	37	17	15234676	15234676	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr17:15234676G>A	ENST00000395930.1	-	3	413	c.227C>T	c.(226-228)tCc>tTc	p.S76F	TEKT3_ENST00000338696.2_Missense_Mutation_p.S76F	NM_031898.2	NP_114104.1	Q9BXF9	TEKT3_HUMAN	tektin 3	76					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				endometrium(1)|kidney(3)|large_intestine(5)|lung(6)|ovary(2)|pancreas(1)|prostate(1)|skin(3)|stomach(1)	23				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		GGTATTCTCGGACACCCTCTG	0.502000													5	72					0	0	0.014758	0	0
STX12	23673	broad.mit.edu	37	1	28148801	28148801	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr1:28148801C>G	ENST00000373943.4	+	9	917	c.792C>G	c.(790-792)atC>atG	p.I264M		NM_177424.2	NP_803173.1	Q86Y82	STX12_HUMAN	syntaxin 12	264					cholesterol efflux|intracellular protein transport|protein stabilization|vesicle-mediated transport	Golgi apparatus|integral to membrane|membrane raft|phagocytic vesicle	SNAP receptor activity			breast(1)|central_nervous_system(1)|large_intestine(3)|lung(3)	8		Colorectal(325;3.46e-05)|all_lung(284;9.43e-05)|Lung NSC(340;0.000185)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;3.96e-24)|Colorectal(126;3.46e-08)|COAD - Colon adenocarcinoma(152;1.83e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00258)|KIRC - Kidney renal clear cell carcinoma(1967;0.00302)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0649)		TTATTCTAATCTTGGGACTTA	0.403000													13	45					0	0	0.013537	0	0
TSSC2	650368	broad.mit.edu	37	11	3427765	3427765	+	RNA	SNP	G	G	C			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr11:3427765G>C	ENST00000529482.1	+	0	882																											CACACGTCCTGCAGTGGCCTG	0.602000													3	39					0	0	0.004672	0	0
EFEMP2	30008	broad.mit.edu	37	11	65636001	65636001	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr11:65636001A>G	ENST00000307998.6	-	8	1057	c.827T>C	c.(826-828)cTg>cCg	p.L276P	EFEMP2_ENST00000528176.1_Missense_Mutation_p.L276P	NM_016938.4	NP_058634.4	O95967	FBLN4_HUMAN	EGF containing fibulin-like extracellular matrix protein 2	276	EGF-like 5; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			cervix(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(12)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	21				READ - Rectum adenocarcinoma(159;0.169)		GCGTGTGGCCAGCAGCTGGTA	0.627000													5	33					0	0	0.004482	0	0
CYP3A4	1576	broad.mit.edu	37	7	99359829	99359829	+	Missense_Mutation	SNP	G	G	A	rs67784355	byFrequency	TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr7:99359829G>A	ENST00000354593.2	-	6	741	c.638C>T	c.(637-639)aCg>aTg	p.T213M	CYP3A4_ENST00000336411.2_Missense_Mutation_p.T363M			P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A, polypeptide 4	363					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			breast(3)|central_nervous_system(3)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|pancreas(1)|skin(2)	18	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	TAATCTGAGCGTTTCATTCAC	0.418000													6	37					0	0	0.001168	0	0
C15orf52	388115	broad.mit.edu	37	15	40628778	40628778	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr15:40628778C>T	ENST00000397536.2	-	5	421	c.386G>A	c.(385-387)cGa>cAa	p.R129Q	C15orf52_ENST00000559313.1_Missense_Mutation_p.R339Q			Q6ZUT6	CO052_HUMAN	chromosome 15 open reading frame 52	339										central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(9)|urinary_tract(1)	19		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		CTGTTACCTTCGGGCCCTGCC	0.652000													7	53					0	0	0.003080	0	0
PGM1	5236	broad.mit.edu	37	1	64097453	64097453	+	Splice_Site	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr1:64097453G>A	ENST00000371083.4	+	4	1104	c.736_splice	c.e4+1	p.V246_splice	PGM1_ENST00000540265.1_Splice_Site_p.V31_splice|PGM1_ENST00000371084.3_Splice_Site_p.V228_splice	NM_001172818.1	NP_001166289.1	P36871	PGM1_HUMAN	phosphoglucomutase 1	228					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			breast(3)|endometrium(1)|kidney(1)|large_intestine(4)|lung(6)|ovary(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	20						TATGCATGGAGGTATACAATC	0.408000													3	51					0	0	0.004672	0	0
PSG8	440533	broad.mit.edu	37	19	43268115	43268115	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr19:43268115C>T	ENST00000404209.4	-	2	479	c.383G>A	c.(382-384)gGt>gAt	p.G128D	PSG8_ENST00000401467.2_Missense_Mutation_p.G128D|PSG8_ENST00000406636.3_Intron|PSG8_ENST00000306511.4_Missense_Mutation_p.G128D	NM_001130167.1	NP_001123639.1	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8	128	Ig-like V-type.					extracellular region				breast(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(9)|lung(19)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	40		Prostate(69;0.00899)				ATTCTCATCACCTCCCATTAT	0.468000													22	224					0	0	0.014323	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118360598	118360598	+	Silent	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr10:118360598G>A	ENST00000528052.1	+	10	1019	c.948G>A	c.(946-948)ccG>ccA	p.P316P	PNLIPRP1_ENST00000534537.1_Silent_p.P316P|PNLIPRP1_ENST00000358834.4_Silent_p.P316P			P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1	316					lipid metabolic process		calcium ion binding|triglyceride lipase activity			breast(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|liver(1)|lung(23)|ovary(1)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	38				all cancers(201;0.0161)		AGTGCTTCCCGTGTCCAGATC	0.448000													16	40					0	0	0.007413	0	0
SRGAP3	9901	broad.mit.edu	37	3	9036109	9036109	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr3:9036109G>A	ENST00000383836.3	-	19	2753	c.2326C>T	c.(2326-2328)Cgc>Tgc	p.R776C	SRGAP3_ENST00000360413.3_Missense_Mutation_p.R752C	NM_014850.3	NP_055665.1	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	776	SH3.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(6)	breast(1)|endometrium(2)|kidney(21)|large_intestine(7)|lung(13)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	54				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TCCGAGGCGCGGTGGTACAGG	0.587000			T	RAF1	pilocytic astrocytoma								10	55					0	0	0.006214	0	0
HAPLN1	1404	broad.mit.edu	37	5	82937403	82937403	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr5:82937403C>T	ENST00000274341.4	-	5	1827	c.977G>A	c.(976-978)aGt>aAt	p.S326N		NM_001884.3	NP_001875.1	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	326	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(12)|liver(1)|lung(15)|ovary(1)|prostate(1)|skin(1)	34		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CTCAGTAGGACTGCAGCGCCT	0.537000													34	105					0	0	0.010818	0	0
KIF11	3832	broad.mit.edu	37	10	94368781	94368781	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr10:94368781C>T	ENST00000260731.3	+	5	482	c.392C>T	c.(391-393)cCc>cTc	p.P131L		NM_004523.3	NP_004514.2	P52732	KIF11_HUMAN	kinesin family member 11	131	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			breast(1)|endometrium(5)|kidney(2)|large_intestine(9)|lung(8)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						TTTCAGGATCCCTTGGCTGGT	0.328000													8	12					0	0	0.003080	0	0
PSG4	5672	broad.mit.edu	37	19	43699308	43699308	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr19:43699308T>C	ENST00000405312.3	-	4	1064	c.827A>G	c.(826-828)aAt>aGt	p.N276S	PSG4_ENST00000433626.2_Missense_Mutation_p.N183S|PSG4_ENST00000244295.9_Intron	NM_002780.3	NP_002771.2	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4	276	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				central_nervous_system(1)|endometrium(2)|large_intestine(8)|lung(10)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	24		Prostate(69;0.00682)				GCTCTGACCATTTAGCCACCA	0.433000													10	165					0	0	0.018920	0	0
DAW1	164781	broad.mit.edu	37	2	228762934	228762934	+	Silent	SNP	T	T	C			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr2:228762934T>C	ENST00000373666.2	+	6	1113	c.477T>C	c.(475-477)tgT>tgC	p.C159C	DAW1_ENST00000545118.1_Silent_p.C144C|DAW1_ENST00000309931.2_Silent_p.C159C					dynein assembly factor with WDR repeat domains 1																		ATAAAACTTGTAAACTCTGGA	0.289000													5	25					0	0	0.001168	0	0
ELMSAN1	91748	broad.mit.edu	37	14	74203721	74203721	+	Missense_Mutation	SNP	C	C	T	rs150626971		TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr14:74203721C>T	ENST00000286523.5	-	3	2511	c.1729G>A	c.(1729-1731)Ggg>Agg	p.G577R	ELMSAN1_ENST00000394071.2_Missense_Mutation_p.G577R	NM_194278.3	NP_919254.2			ELM2 and Myb/SANT-like domain containing 1																		GCATCTGTCCCGGGGATTCGG	0.607000													4	41					0	0	0.014758	0	0
FAM83C	128876	broad.mit.edu	37	20	33874757	33874757	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr20:33874757G>T	ENST00000374408.3	-	4	1921	c.1825C>A	c.(1825-1827)Ccc>Acc	p.P609T		NM_178468.5	NP_848563.1	Q9BQN1	FA83C_HUMAN	family with sequence similarity 83, member C	609										central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(6)|lung(19)|ovary(2)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	40			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GTTTCAAGGGGCACTCTGGAA	0.622000													15	32					9.16793e-09	2.57407e-08	0.004990	1	0
EMILIN2	84034	broad.mit.edu	37	18	2891825	2891825	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr18:2891825C>T	ENST00000254528.3	+	4	1859	c.1700C>T	c.(1699-1701)gCc>gTc	p.A567V		NM_032048.2	NP_114437.2	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2	567					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			breast(2)|endometrium(5)|kidney(3)|large_intestine(8)|liver(2)|lung(16)|ovary(1)|prostate(1)|skin(5)|stomach(1)|urinary_tract(4)	48				READ - Rectum adenocarcinoma(2;0.1)		ATGGAAGGTGCCTTGCCAAAC	0.493000													5	45					0	0	0.014758	0	0
SETD2	29072	broad.mit.edu	37	3	47125651	47125651	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr3:47125651delG	ENST00000409792.3	-	12	5661	c.5619delC	c.(5617-5619)ccfs	p.P1873fs		NM_014159.6	NP_054878.5	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1873					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			breast(6)|central_nervous_system(5)|endometrium(4)|kidney(63)|large_intestine(18)|lung(26)|ovary(6)|prostate(2)|skin(3)|soft_tissue(1)|stomach(2)|urinary_tract(5)	141		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TTAGTTTCTTGGGAGTGTCTG	0.453			"""N, F, S, Mis"""		clear cell renal carcinoma								12	73	---	---	---	---					
SETD2	29072	broad.mit.edu	37	3	47155477	47155478	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr3:47155477_47155478delTT	ENST00000409792.3	-	5	4645_4646	c.4603_4604delAA	c.(4603-4605)tfs	p.N1535fs		NM_014159.6	NP_054878.5	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1535	AWS.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			breast(6)|central_nervous_system(5)|endometrium(4)|kidney(63)|large_intestine(18)|lung(26)|ovary(6)|prostate(2)|skin(3)|soft_tissue(1)|stomach(2)|urinary_tract(5)	141		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		ATAATCCCCATTTGGACACCGA	0.376			"""N, F, S, Mis"""		clear cell renal carcinoma								11	68	---	---	---	---					
MED23	9439	broad.mit.edu	37	6	131919786	131919787	+	Frame_Shift_Ins	INS	-	-	G			TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr6:131919786_131919787insG	ENST00000403834.3	-	19	2526_2527	c.2353_2354insC	c.(2353-2355)cttfs	p.L785fs	MED23_ENST00000354577.4_Frame_Shift_Ins_p.L785fs|MED23_ENST00000368060.3_Frame_Shift_Ins_p.L779fs|MED23_ENST00000540546.1_Frame_Shift_Ins_p.L785fs|MED23_ENST00000368058.1_Frame_Shift_Ins_p.L785fs|MED23_ENST00000545957.1_Frame_Shift_Ins_p.L420fs|MED23_ENST00000368053.4_Frame_Shift_Ins_p.L785fs|MED23_ENST00000368068.3_Frame_Shift_Ins_p.L779fs			Q9ULK4	MED23_HUMAN	mediator complex subunit 23	779					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			NS(1)|breast(3)|central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(12)|lung(15)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	44	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		CATAGAGAAGTGGGTAATAATG	0.396													7	26	---	---	---	---					
RP11-377D9.3	0	broad.mit.edu	37	12	13174141	13174142	+	RNA	INS	-	-	AAC	rs112328257	by1000genomes	TCGA-55-6986-01A-11D-1945-08	TCGA-55-6986-11A-01D-1945-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5a7f3c88-ef02-4e97-8009-5622245b6a09	2d60408f-5a74-4cd1-a27e-168d1d3379e6	g.chr12:13174141_13174142insAAC	ENST00000543321.1	+	0	1025																											tctgtctcaaaaacaacaacaa	0.550													3	5	---	---	---	---					
