Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
SFRP4	6424	hgsc.bcm.edu	36	7	37922298	37922298	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PSPH	5723	hgsc.bcm.edu	36	7	56046950	56046950	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
EIF4H	7458	hgsc.bcm.edu	36	7	73247101	73247101	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CROT	54677	hgsc.bcm.edu	36	7	86849386	86849386	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SRI	6717	hgsc.bcm.edu	36	7	87676661	87676661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CDK14	0	hgsc.bcm.edu	36	7	90330510	90330510	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TRIM56	81844	hgsc.bcm.edu	36	7	100517485	100517485	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LAMB4	22798	hgsc.bcm.edu	36	7	107491566	107491566	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RNF148	378925	hgsc.bcm.edu	36	7	122129621	122129621	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FSCN3	29999	hgsc.bcm.edu	36	7	127022762	127022762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TNPO3	23534	hgsc.bcm.edu	36	7	128442341	128442341	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MLL3	58508	hgsc.bcm.edu	36	7	151490503	151490503	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ANGPT4	51378	hgsc.bcm.edu	36	20	806965	806965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PAK7	57144	hgsc.bcm.edu	36	20	9494754	9494754	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLC13A3	64849	hgsc.bcm.edu	36	20	44654545	44654545	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GNAS	2778	hgsc.bcm.edu	36	20	56917816	56917816	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TAF4	6874	hgsc.bcm.edu	36	20	60023019	60023019	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
EP300	2033	hgsc.bcm.edu	36	22	39899664	39899664	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SREBF2	6721	hgsc.bcm.edu	36	22	40623107	40623107	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SMC1B	27127	hgsc.bcm.edu	36	22	44146056	44146056	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLC25A21	89874	hgsc.bcm.edu	36	14	36223808	36223808	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
NID2	22795	hgsc.bcm.edu	36	14	51578759	51578759	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ZBTB1	22890	hgsc.bcm.edu	36	14	64059202	64059202	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
C14orf118	55668	hgsc.bcm.edu	36	14	75714093	75714093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RAGE	5891	hgsc.bcm.edu	36	14	101768676	101768676	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CKB	1152	hgsc.bcm.edu	36	14	103058441	103058441	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLC1A6	6511	hgsc.bcm.edu	36	19	14928369	14928369	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ZNF675	171392	hgsc.bcm.edu	36	19	23628885	23628885	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LRFN1	57622	hgsc.bcm.edu	36	19	44497132	44497132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LIG1	26018	hgsc.bcm.edu	36	19	53348952	53348952	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
NKX2-6	137814	hgsc.bcm.edu	36	8	23616029	23616029	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
HOOK3	84376	hgsc.bcm.edu	36	8	42933554	42933554	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RB1CC1	9821	hgsc.bcm.edu	36	8	53732893	53732893	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ASPH	444	hgsc.bcm.edu	36	8	62592649	62592649	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PLEKHF2	79666	hgsc.bcm.edu	36	8	96236168	96236168	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
EIF3E	3646	hgsc.bcm.edu	36	8	109309780	109309780	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MFN2	9927	hgsc.bcm.edu	36	1	11988550	11988550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
USP48	84196	hgsc.bcm.edu	36	1	21894211	21894211	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KHDRBS1	10657	hgsc.bcm.edu	36	1	32276784	32276784	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
DMAP1	55929	hgsc.bcm.edu	36	1	44456685	44456685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
IL12RB2	3595	hgsc.bcm.edu	36	1	67567951	67567951	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
AK5	26289	hgsc.bcm.edu	36	1	77649315	77649315	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SORT1	6272	hgsc.bcm.edu	36	1	109698586	109698586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SMG7	9887	hgsc.bcm.edu	36	1	181769460	181769460	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CDC73	79577	hgsc.bcm.edu	36	1	191360877	191360877	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ASPM	259266	hgsc.bcm.edu	36	1	195378325	195378325	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CR1	1378	hgsc.bcm.edu	36	1	205856626	205856626	+	Missense_Mutation	SNP	A	A	G	rs55770942	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RYR2	6262	hgsc.bcm.edu	36	1	235844284	235844284	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FH	3949	hgsc.bcm.edu	36	1	239730503	239730503	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
OR52E4	390081	hgsc.bcm.edu	36	11	5862597	5862597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
METT5D1	196074	hgsc.bcm.edu	36	11	28091607	28091607	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
OR4S2	219431	hgsc.bcm.edu	36	11	55175314	55175314	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
P2RX3	5024	hgsc.bcm.edu	36	11	56874848	56874848	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RTN3	10313	hgsc.bcm.edu	36	11	63280187	63280187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GPR152	390212	hgsc.bcm.edu	36	11	66975668	66975668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CHRDL2	25884	hgsc.bcm.edu	36	11	74102137	74102137	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CLNS1A	1207	hgsc.bcm.edu	36	11	77011281	77011281	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ME3	56110	hgsc.bcm.edu	36	11	85830125	85830125	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CNTN5	53942	hgsc.bcm.edu	36	11	99717124	99717124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MMP27	64066	hgsc.bcm.edu	36	11	102069922	102069922	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MMP8	4317	hgsc.bcm.edu	36	11	102098603	102098603	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ATM	472	hgsc.bcm.edu	36	11	107611761	107611761	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
DNAH8	1769	hgsc.bcm.edu	36	6	38881313	38881313	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GPR115	221393	hgsc.bcm.edu	36	6	47790131	47790131	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLC35D3	340146	hgsc.bcm.edu	36	6	137287138	137287138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TNFAIP3	7128	hgsc.bcm.edu	36	6	138241987	138241987	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
UST	10090	hgsc.bcm.edu	36	6	149327287	149327287	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SYNE1	23345	hgsc.bcm.edu	36	6	152504036	152504036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TP53	7157	hgsc.bcm.edu	36	17	7517643	7517643	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ATAD5	79915	hgsc.bcm.edu	36	17	26186086	26186086	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ERBB2	2064	hgsc.bcm.edu	36	17	35133320	35133320	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CDC6	990	hgsc.bcm.edu	36	17	35701115	35701115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
USP25	29761	hgsc.bcm.edu	36	21	16172024	16172024	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
APP	351	hgsc.bcm.edu	36	21	26406309	26406309	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KRTAP8-1	337879	hgsc.bcm.edu	36	21	31107249	31107249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CACNA1H	8912	hgsc.bcm.edu	36	16	1200601	1200601	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLX4	0	hgsc.bcm.edu	36	16	3587925	3587925	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
THUMPD1	55623	hgsc.bcm.edu	36	16	20660549	20660549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ZKSCAN2	342357	hgsc.bcm.edu	36	16	25158826	25158826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LCAT	3931	hgsc.bcm.edu	36	16	66535494	66535494	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CDH1	51343	hgsc.bcm.edu	36	16	67329720	67329720	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CNTNAP4	85445	hgsc.bcm.edu	36	16	75113604	75113604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ESCO1	114799	hgsc.bcm.edu	36	18	17398169	17398169	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KIAA1328	57536	hgsc.bcm.edu	36	18	32901213	32901213	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KIAA1632	57724	hgsc.bcm.edu	36	18	41704588	41704588	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SMAD4	4089	hgsc.bcm.edu	36	18	46829668	46829668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SMAD4	4089	hgsc.bcm.edu	36	18	46845864	46845864	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
IL17RC	84818	hgsc.bcm.edu	36	3	9945142	9945142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
VHL	7428	hgsc.bcm.edu	36	3	10166594	10166594	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FGD5	152273	hgsc.bcm.edu	36	3	14836733	14836733	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FGD5	152273	hgsc.bcm.edu	36	3	14837029	14837029	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KCNH8	131096	hgsc.bcm.edu	36	3	19411742	19411742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CTNNB1	1499	hgsc.bcm.edu	36	3	41241118	41241118	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CTNNB1	1499	hgsc.bcm.edu	36	3	41241146	41241146	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PLA1A	51365	hgsc.bcm.edu	36	3	120810360	120810360	+	Missense_Mutation	SNP	G	G	A	rs61733987	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GOLGB1	2804	hgsc.bcm.edu	36	3	122899239	122899239	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FAM194A	0	hgsc.bcm.edu	36	3	151886291	151886291	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
EHHADH	1962	hgsc.bcm.edu	36	3	186393440	186393440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KRT85	3891	hgsc.bcm.edu	36	12	51047365	51047365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
UTP20	27340	hgsc.bcm.edu	36	12	100270013	100270013	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CRY1	1407	hgsc.bcm.edu	36	12	105917967	105917967	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TMEM132C	92293	hgsc.bcm.edu	36	12	127756689	127756689	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LRRC57	255252	hgsc.bcm.edu	36	15	40626959	40626959	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MYO5C	55930	hgsc.bcm.edu	36	15	50304579	50304579	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TBC1D21	161514	hgsc.bcm.edu	36	15	71965556	71965556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SCAPER	49855	hgsc.bcm.edu	36	15	74844369	74844369	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
IQGAP1	8826	hgsc.bcm.edu	36	15	88818011	88818011	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
IQGAP1	8826	hgsc.bcm.edu	36	15	88827791	88827791	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LRRK1	79705	hgsc.bcm.edu	36	15	99383818	99383818	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TLR8	51311	hgsc.bcm.edu	36	X	12848081	12848081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SYTL5	94122	hgsc.bcm.edu	36	X	37778155	37778155	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
WDR13	64743	hgsc.bcm.edu	36	X	48342218	48342218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
WNK3	65267	hgsc.bcm.edu	36	X	54282101	54282101	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLC16A2	6567	hgsc.bcm.edu	36	X	73668016	73668016	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ODZ1	10178	hgsc.bcm.edu	36	X	123857636	123857636	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GPR112	139378	hgsc.bcm.edu	36	X	135255272	135255272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLITRK2	84631	hgsc.bcm.edu	36	X	144713171	144713171	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
F8	2157	hgsc.bcm.edu	36	X	153812308	153812308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
AFAP1	60312	hgsc.bcm.edu	36	4	7827510	7827510	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PRKG2	5593	hgsc.bcm.edu	36	4	82284457	82284457	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
HPSE	10855	hgsc.bcm.edu	36	4	84450938	84450938	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ANK2	287	hgsc.bcm.edu	36	4	114498619	114498619	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FBXW7	55294	hgsc.bcm.edu	36	4	153478419	153478419	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FAT1	2195	hgsc.bcm.edu	36	4	187867472	187867472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GLI2	2736	hgsc.bcm.edu	36	2	121452517	121452517	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FAM123C	205147	hgsc.bcm.edu	36	2	131236642	131236642	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SCN3A	6328	hgsc.bcm.edu	36	2	165720557	165720557	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
HOXD10	3236	hgsc.bcm.edu	36	2	176690200	176690200	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
HOXD10	3236	hgsc.bcm.edu	36	2	176690202	176690202	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FN1	2335	hgsc.bcm.edu	36	2	215959814	215959814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SPEG	10290	hgsc.bcm.edu	36	2	220063442	220063442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
UGT1A5	54579	hgsc.bcm.edu	36	2	234287152	234287152	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
HJURP	55355	hgsc.bcm.edu	36	2	234414835	234414835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KANK1	23189	hgsc.bcm.edu	36	9	728304	728304	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MPDZ	84708	hgsc.bcm.edu	36	9	13109559	13109559	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TOPORS	10210	hgsc.bcm.edu	36	9	32533970	32533970	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PTCH1	5727	hgsc.bcm.edu	36	9	97287848	97287848	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
OR1J2	26740	hgsc.bcm.edu	36	9	124313083	124313083	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ZMYM2	7750	hgsc.bcm.edu	36	13	19536636	19536636	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
NALCN	259232	hgsc.bcm.edu	36	13	100557860	100557860	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SPAG6	9576	hgsc.bcm.edu	36	10	22697458	22697458	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ZEB1	6935	hgsc.bcm.edu	36	10	31852955	31852955	+	Missense_Mutation	SNP	G	G	A	rs35653460	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CSGALNACT2	55454	hgsc.bcm.edu	36	10	42998943	42998943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PTEN	5728	hgsc.bcm.edu	36	10	89707619	89707619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SLK	9748	hgsc.bcm.edu	36	10	105752738	105752738	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
VWA2	340706	hgsc.bcm.edu	36	10	116022527	116022527	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FASTKD3	79072	hgsc.bcm.edu	36	5	7920093	7920093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
UGT3A2	167127	hgsc.bcm.edu	36	5	36071727	36071727	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
F2RL2	2151	hgsc.bcm.edu	36	5	75949212	75949212	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RASGRF2	5924	hgsc.bcm.edu	36	5	80426464	80426464	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
APC	324	hgsc.bcm.edu	36	5	112207081	112207081	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CCDC112	153733	hgsc.bcm.edu	36	5	114638976	114638976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RAD50	10111	hgsc.bcm.edu	36	5	132004321	132004321	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
GABRP	2568	hgsc.bcm.edu	36	5	170171763	170171763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
NF2	4771	hgsc.bcm.edu	36	22	28368189	28368189	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FBLIM1	54751	hgsc.bcm.edu	36	1	15964235	15964236	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SEMA6C	10500	hgsc.bcm.edu	36	1	149379079	149379080	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RPTN	126638	hgsc.bcm.edu	36	1	150395690	150395725	+	In_Frame_Del	DEL	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
EPRS	2058	hgsc.bcm.edu	36	1	218219560	218219578	+	Frame_Shift_Del	DEL	TAAATGATGTGATGTTCCT	TAAATGATGTGATGTTCCT	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TAAATGATGTGATGTTCCT	TAAATGATGTGATGTTCCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
FMN2	56776	hgsc.bcm.edu	36	1	238437537	238437569	+	In_Frame_Del	DEL	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TNFAIP6	7130	hgsc.bcm.edu	36	2	151944292	151944292	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
XRN1	54464	hgsc.bcm.edu	36	3	143626786	143626788	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TGG	TGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
MUC4	4585	hgsc.bcm.edu	36	3	196999762	196999809	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
IP6K3	117283	hgsc.bcm.edu	36	6	33802504	33802513	+	Frame_Shift_Del	DEL	GGTACTCGGA	GGTACTCGGA	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	GGTACTCGGA	GGTACTCGGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TMEM184A	202915	hgsc.bcm.edu	36	7	1553179	1553180	+	In_Frame_Ins	INS	-	-	GCC	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
RP1L1	94137	hgsc.bcm.edu	36	8	10505091	10505093	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TCC	TCC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PDSS1	23590	hgsc.bcm.edu	36	10	27064251	27064253	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TTC	TTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PDSS1	23590	hgsc.bcm.edu	36	10	27064256	27064257	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
LIPM	340654	hgsc.bcm.edu	36	10	90570192	90570197	+	In_Frame_Del	DEL	AGGAGG	AGGAGG	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	AGGAGG	AGGAGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CREB3L1	90993	hgsc.bcm.edu	36	11	46286056	46286057	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ALDH3B1	221	hgsc.bcm.edu	36	11	67551954	67551955	+	Frame_Shift_Ins	INS	-	-	C	rs11436139	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
B3GNT6	192134	hgsc.bcm.edu	36	11	76429190	76429190	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CASP5	838	hgsc.bcm.edu	36	11	104383251	104383251	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
KLHDC2	23588	hgsc.bcm.edu	36	14	49314925	49314925	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
SRCAP	10847	hgsc.bcm.edu	36	16	30641017	30641026	+	Frame_Shift_Del	DEL	ACCTCTCACC	ACCTCTCACC	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	ACCTCTCACC	ACCTCTCACC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
CDH15	1013	hgsc.bcm.edu	36	16	87787493	87787493	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
AMAC1L3	643664	hgsc.bcm.edu	36	17	7326551	7326564	+	Frame_Shift_Del	DEL	CTGGACTCTGGACA	CTGGACTCTGGACA	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	CTGGACTCTGGACA	CTGGACTCTGGACA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
TP53	7157	hgsc.bcm.edu	36	17	7519161	7519164	+	Frame_Shift_Del	DEL	TGCT	TGCT	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TGCT	TGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
OTOP3	347741	hgsc.bcm.edu	36	17	70449689	70449690	+	In_Frame_Ins	INS	-	-	TCT	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
DSCAM	1826	hgsc.bcm.edu	36	21	40345858	40345871	+	Frame_Shift_Del	DEL	TGCCTCTCCAAAGT	TGCCTCTCCAAAGT	-	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	TGCCTCTCCAAAGT	TGCCTCTCCAAAGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
PES1	23481	hgsc.bcm.edu	36	22	29304933	29304934	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
ATP7A	538	hgsc.bcm.edu	36	X	77171454	77171455	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AG-3732-01A-11D-1657-10	TCGA-AG-3732-11A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a627bd7-6de9-42dd-8e31-7a1985e9d9a3	7c5a47b4-4ea6-42cc-8e3f-8150c231f796
